Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 145 of 211
Found at i:45693248 original size:45 final size:44
Alignment explanation
Indices: 45693116--45693315 Score: 152
Period size: 44 Copynumber: 4.5 Consensus size: 44
45693106 TCGCATTAGT
* * * **
45693116 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTG-AGTAAGCAGG
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTGA-TAAA
* * * * *
45693160 TCTTATCCCCCTGAGATTGCAGGGGGGCAGATCGAAGATGATAAA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAG-TGATAAA
* *
45693205 TCTTATCTCCCTGAGGTTGCAGTGGAGTAGATTGAAGCCGAT-AA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAG-TGATAAA
* * * * * * * *
45693249 TCCTATCTCCCTAAAGTTGTAGTGGAACAGATTAAAGTAATAGA
1 TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTGATAAA
* * *
45693293 TCTTATTTCTCTGAAGTTGCAGT
1 TCTTATCTCCCTGAGGTTGCAGT
45693316 AGAGTGGATC
Statistics
Matches: 120, Mismatches: 33, Indels: 6
0.75 0.21 0.04
Matches are distributed among these distances:
43 2 0.02
44 79 0.66
45 37 0.31
46 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTGATAAA
Found at i:45693435 original size:45 final size:44
Alignment explanation
Indices: 45693333--45693435 Score: 109
Period size: 44 Copynumber: 2.3 Consensus size: 44
45693323 ATCGCATTAG
* * *
45693333 GTCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAGTAAGCAA
1 GTCTTATCTCCCTGAAGTTCCAGCGGAGCAAACTGAGAAAGCAA
* * * *
45693377 GTCTTATCCCCCTGAAGTTCCAGTGGGGCAAACTGGGAACAGCGAA
1 GTCTTATCTCCCTGAAGTTCCAGCGGAGCAAACTGAGAA-AGC-AA
*
45693423 -TCTTATTTCCCTG
1 GTCTTATCTCCCTG
45693436 GCAGTGCAGT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 32 0.67
45 14 0.29
46 2 0.04
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.25
Consensus pattern (44 bp):
GTCTTATCTCCCTGAAGTTCCAGCGGAGCAAACTGAGAAAGCAA
Found at i:45693769 original size:7 final size:7
Alignment explanation
Indices: 45693757--45693800 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
45693747 AGCAGAGAGG
45693757 ATTTTGT
1 ATTTTGT
45693764 ATTTTGT
1 ATTTTGT
45693771 ATTTT-T
1 ATTTTGT
45693777 A-TTT-T
1 ATTTTGT
*
45693782 ATTTTAT
1 ATTTTGT
45693789 ATTTTGT
1 ATTTTGT
45693796 ATTTT
1 ATTTT
45693801 CGGCTATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
5 5 0.15
6 5 0.15
7 24 0.71
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (7 bp):
ATTTTGT
Found at i:45693786 original size:18 final size:19
Alignment explanation
Indices: 45693763--45693800 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
45693753 GAGGATTTTG
*
45693763 TATTTTGTATTTT-TATTT
1 TATTTTATATTTTGTATTT
45693781 TATTTTATATTTTGTATTT
1 TATTTTATATTTTGTATTT
45693800 T
1 T
45693801 CGGCTATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.76
Consensus pattern (19 bp):
TATTTTATATTTTGTATTT
Found at i:45706572 original size:42 final size:43
Alignment explanation
Indices: 45706507--45706624 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 43
45706497 AATTTGAGAT
* * * *
45706507 TTACGTGTAATACCATGTTTGGGAGATTGGCATCG-TATATGA
1 TTACGTGTAAGACCATGTCTGGGACAGTGGCATCGTTATATGA
* *
45706549 TTACGTGTAAGACCCTGTCTGGGACAGTGGCATCGTTATTTGA
1 TTACGTGTAAGACCATGTCTGGGACAGTGGCATCGTTATATGA
* * * *
45706592 TCACATGTAAGACCACGCCTGGGAC-GTTGGCAT
1 TTACGTGTAAGACCATGTCTGGGACAG-TGGCAT
45706625 TGTACGAGTT
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 31 0.49
43 32 0.51
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACAGTGGCATCGTTATATGA
Found at i:45711636 original size:23 final size:23
Alignment explanation
Indices: 45711610--45711654 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
45711600 GTGTTATTGA
45711610 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
45711633 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
45711655 ACCAGTGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:45711660 original size:23 final size:23
Alignment explanation
Indices: 45711611--45711661 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
45711601 TGTTATTGAT
**
45711611 CAGTGGTAGCTTCGGCTACATTT
1 CAGTGGTAGCTTCGGCTACATAC
45711634 CAGTGGTAGCTTCGGCTACATAC
1 CAGTGGTAGCTTCGGCTACATAC
45711657 CAGTG
1 CAGTG
45711662 TGGCACTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACATAC
Found at i:45717791 original size:37 final size:37
Alignment explanation
Indices: 45717735--45717819 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
45717725 GTCCGATTAT
*
45717735 CCCTATACACCATATAGGGTATTAAATACACATCCAA
1 CCCTACACACCATATAGGGTATTAAATACACATCCAA
* * * *
45717772 CCCTGCACACCATTTAGGGTATTAAATACTCATCTAA
1 CCCTACACACCATATAGGGTATTAAATACACATCCAA
45717809 CCCTACACACC
1 CCCTACACACC
45717820 TCTTAGTGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.35, C:0.32, G:0.08, T:0.25
Consensus pattern (37 bp):
CCCTACACACCATATAGGGTATTAAATACACATCCAA
Found at i:45718108 original size:21 final size:21
Alignment explanation
Indices: 45718065--45718108 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
45718055 CAAATAGCAA
**
45718065 ATCATACATAACATATTTTAG
1 ATCATACATAACATATTACAG
*
45718086 ATCATACATAACGTATTACAG
1 ATCATACATAACATATTACAG
45718107 AT
1 AT
45718109 TATGCTTATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (21 bp):
ATCATACATAACATATTACAG
Found at i:45723944 original size:92 final size:93
Alignment explanation
Indices: 45723821--45723992 Score: 233
Period size: 92 Copynumber: 1.9 Consensus size: 93
45723811 TTTTTTTTTG
* * **
45723821 ATTTTCCAAAGCATTGAACCTTAAATCGGTATCGATACCA-G-ACAGGGTATTGATAAATTTTG-
1 ATTTTCCAAAACATTGAACCTCAAATCGGTATCGATACCAGGTA-AGGGTATCAATAAATTTTGC
*
45723883 AAAGGTATCGATACTTTTGATTTTTGTTCA
65 AAA-GTATCAATACTTTTGATTTTTGTTCA
* * *
45723913 ATTTTCCAAAACATTGAAGCTCAAATTGGTATCGATACCAGGTAAGGGTATCAATAATTTTTGCA
1 ATTTTCCAAAACATTGAACCTCAAATCGGTATCGATACCAGGTAAGGGTATCAATAAATTTTGCA
45723978 AAGTATCAATACTTT
66 AAGTATCAATACTTT
45723993 GTTAAGGGTA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
92 36 0.52
93 29 0.42
94 4 0.06
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (93 bp):
ATTTTCCAAAACATTGAACCTCAAATCGGTATCGATACCAGGTAAGGGTATCAATAAATTTTGCA
AAGTATCAATACTTTTGATTTTTGTTCA
Found at i:45727272 original size:29 final size:29
Alignment explanation
Indices: 45727205--45727266 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
45727195 CAAGTAATCT
*
45727205 CACAAACGATAGGTTGCGATTTGCTAACA
1 CACAAATGATAGGTTGCGATTTGCTAACA
* *
45727234 CACAAATGATAGGTTGTGATTTGCTAACT
1 CACAAATGATAGGTTGCGATTTGCTAACA
45727263 CACA
1 CACA
45727267 TGTGATTATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (29 bp):
CACAAATGATAGGTTGCGATTTGCTAACA
Found at i:45728760 original size:13 final size:13
Alignment explanation
Indices: 45728738--45728771 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
45728728 TCTAAAATAG
45728738 TAAC-AAATTTAA
1 TAACAAAATTTAA
45728750 TAACAAAATTTAA
1 TAACAAAATTTAA
*
45728763 TAATAAAAT
1 TAACAAAAT
45728772 AATAGTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (13 bp):
TAACAAAATTTAA
Found at i:45729626 original size:14 final size:15
Alignment explanation
Indices: 45729609--45729641 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
45729599 CTTCTCTCCA
45729609 TTTTCTTCTTTTT-T
1 TTTTCTTCTTTTTGT
*
45729623 TTTTGTTCTTTTTGT
1 TTTTCTTCTTTTTGT
45729638 TTTT
1 TTTT
45729642 TGCGTTCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (15 bp):
TTTTCTTCTTTTTGT
Found at i:45736665 original size:13 final size:13
Alignment explanation
Indices: 45736647--45736671 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45736637 CATTTGTTCT
45736647 ATTCTGATATGAC
1 ATTCTGATATGAC
45736660 ATTCTGATATGA
1 ATTCTGATATGA
45736672 TGTATGTGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (13 bp):
ATTCTGATATGAC
Found at i:45736779 original size:32 final size:33
Alignment explanation
Indices: 45736685--45736780 Score: 88
Period size: 32 Copynumber: 2.9 Consensus size: 33
45736675 ATGTGCTTTT
* * * *
45736685 GAAAACATGACATTCTGATCTGATATATGTTTAT
1 GAAAATATGACCTT-TGATCTGATATATGTCTAC
* * *
45736719 GAAAATATGATACTTTGATCCGAAATATG-CT-C
1 GAAAATATGA-CCTTTGATCTGATATATGTCTAC
45736751 GAAAATATGACCTTATGATCTGATATATGT
1 GAAAATATGACCTT-TGATCTGATATATGT
45736781 TTCTAGTAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
31 3 0.06
32 22 0.45
33 1 0.02
34 21 0.43
35 2 0.04
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.35
Consensus pattern (33 bp):
GAAAATATGACCTTTGATCTGATATATGTCTAC
Found at i:45737530 original size:15 final size:14
Alignment explanation
Indices: 45737505--45737539 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
45737495 TTTGCTTAAG
*
45737505 TACCAATTTTGTAC
1 TACCAATTTTGTAA
45737519 TACCATATTTTGTAA
1 TACCA-ATTTTGTAA
45737534 TACCAA
1 TACCAA
45737540 ATATTGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (14 bp):
TACCAATTTTGTAA
Found at i:45741047 original size:7 final size:7
Alignment explanation
Indices: 45741037--45741062 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
45741027 TATTTTAGTT
45741037 TTTAGGG
1 TTTAGGG
45741044 TTTAGGG
1 TTTAGGG
45741051 TTTAGGG
1 TTTAGGG
45741058 TTTAG
1 TTTAG
45741063 TTATTAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:45741047 original size:14 final size:14
Alignment explanation
Indices: 45741030--45741064 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
45741020 GTATTATTAT
45741030 TTTAGTTTTTAGGG
1 TTTAGTTTTTAGGG
**
45741044 TTTAGGGTTTAGGG
1 TTTAGTTTTTAGGG
45741058 TTTAGTT
1 TTTAGTT
45741065 ATTAATAATT
Statistics
Matches: 17, Mismatches: 4, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.31, T:0.54
Consensus pattern (14 bp):
TTTAGTTTTTAGGG
Found at i:45741272 original size:76 final size:76
Alignment explanation
Indices: 45741115--45741278 Score: 190
Period size: 76 Copynumber: 2.2 Consensus size: 76
45741105 ACTAATATTA
45741115 ATATTATTGTTAGTTATTAGGATAAGTAAAAACCCTAATTATTATTTTAGTTAGTATGATTGTTA
1 ATATTATTGTTAGTTATTAGGATAAGTAAAAACCCTAATTATTATTTTAGTTAGTATGATTGTTA
* * * *
45741180 GTTTTTACATT
66 GTTATAAAACT
*** * * *
45741191 ATATTATTGTTAGTTATTATTTTTAGT-AAAACCCTAATTATTCTTGTTAGTTAGTATTATT-TT
1 ATATTATTGTTAGTTATTAGGATAAGTAAAAACCCTAATTATTATT-TTAGTTAGTATGATTGTT
45741254 GAG-TATAAAACT
65 -AGTTATAAAACT
45741266 ATTATTATTGTTA
1 A-TATTATTGTTA
45741279 TTGTGTTAGT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
75 25 0.33
76 50 0.67
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.51
Consensus pattern (76 bp):
ATATTATTGTTAGTTATTAGGATAAGTAAAAACCCTAATTATTATTTTAGTTAGTATGATTGTTA
GTTATAAAACT
Found at i:45746640 original size:156 final size:154
Alignment explanation
Indices: 45746459--45747067 Score: 696
Period size: 156 Copynumber: 3.9 Consensus size: 154
45746449 AAAAATATAA
45746459 TATTTCGGCCCTTTGCTCGTATTTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTATTT
1 TATTTCGGCCCTTTGCTCGTATTTTTTTCCCGAATTTTATTACTTT-AA-AAAAATATATTATTT
* ** * * *
45746524 TTTTGTTTTATTAGTTTACTTTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTAT-TTT
64 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTGTGTTT
* *
45746588 TTTAAAAAAAATTAGTAAAAAAACTCT
129 TTT-AAATAAATTAGTAAAAAAACCCT
* * * *
45746615 TATTTCGGCCCTTTGTTCATATTTTTTTCCAGAATTTTATTACTTTAAAAAAA-ATACTATTTTC
1 TATTTCGGCCCTTTGCTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAATATATTATTTTC
* * *
45746679 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTAAATAAATTTAGTGTGTTT
66 TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGT--ATTAATTAAGTGTGTTT
*
45746744 TTTAAATAAATT-TTAAAAAAAACCCT
129 TTTAAATAAATTAGT-AAAAAAACCCT
*
45746770 TATTTCGGCCATTTGCTCGTA-TTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTATTT
1 TATTTCGGCCCTTTGCTCGTATTTTTTTCCCGAATTTTATTACTTT-AA-AAAAATATATTATTT
* *
45746834 TCGTATTTTATTTTTTACATTATTTTTACATTATTTTAGTATATTATGTTTGAAATGTTTTAATT
64 TC-TA----A--TTTT--ATTA-TTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATT
** * * *
45746899 ATTTCTGTTTTTT--TTAATTTAGT-AAAAAACCCT
119 AAGTGTGTTTTTTAAATAAATTAGTAAAAAAACCCT
* * * * *
45746932 TACTTCGGCCCTTTGTTCGTATTGTTTTCTCCGCATTTTTTTACTTT-AAAAAATATCA-TATTT
1 TATTTCGGCCCTTTGCTCGTATTTTTTTC-CCGAATTTTATTACTTTAAAAAAATAT-ATTATTT
* *
45746995 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATTTATTAATTTAGTGTGTTT
64 TCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTGTGTTT
45747060 TTTAAATA
129 TTTAAATA
45747068 TATAATTTTT
Statistics
Matches: 384, Mismatches: 46, Indels: 49
0.80 0.10 0.10
Matches are distributed among these distances:
151 48 0.12
152 4 0.01
153 52 0.14
154 33 0.09
155 50 0.13
156 55 0.14
157 10 0.03
158 2 0.01
160 2 0.01
161 15 0.04
162 31 0.08
163 11 0.03
164 20 0.05
165 14 0.04
166 4 0.01
167 33 0.09
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (154 bp):
TATTTCGGCCCTTTGCTCGTATTTTTTTCCCGAATTTTATTACTTTAAAAAAATATATTATTTTC
TAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTGTGTTTTT
TAAATAAATTAGTAAAAAAACCCT
Found at i:45746858 original size:12 final size:12
Alignment explanation
Indices: 45746841--45746870 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
45746831 TTTTCGTATT
45746841 TTATTTTTTACA
1 TTATTTTTTACA
45746853 TTA-TTTTTACA
1 TTATTTTTTACA
45746864 TTATTTT
1 TTATTTT
45746871 AGTATATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (12 bp):
TTATTTTTTACA
Found at i:45746879 original size:13 final size:12
Alignment explanation
Indices: 45746824--45746885 Score: 54
Period size: 13 Copynumber: 5.0 Consensus size: 12
45746814 TCAATAAAAA
45746824 TATATTATTTTCG
1 TATATTATTTT-G
* *
45746837 TATTTTATTTTT
1 TATATTATTTTG
*
45746849 TACATTATTTT-
1 TATATTATTTTG
*
45746860 TACATTATTTTAG
1 TATATTATTTT-G
45746873 TATATTATGTTTG
1 TATATTAT-TTTG
45746886 AAATGTTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
11 11 0.27
12 9 0.22
13 18 0.44
14 3 0.07
ACGTcount: A:0.24, C:0.05, G:0.06, T:0.65
Consensus pattern (12 bp):
TATATTATTTTG
Found at i:45747026 original size:318 final size:307
Alignment explanation
Indices: 45746459--45747067 Score: 850
Period size: 318 Copynumber: 1.9 Consensus size: 307
45746449 AAAAATATAA
*
45746459 TATTTCGGCCCTTTGCTCGTATTTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTATTT
1 TATTTCGGCCATTTGCTCGTATTTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTATTT
*
45746524 TTTTGTTTTATTAGTTTACTTTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTATTTTT
66 TTTTGTTTTATTAGTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTATTTTT
* *
45746589 TTAAAAAAAATTAGTAAAAAAACTCTTATTTCGGCCCTTTGTTCATATTTTTTTCCAGAATTTTA
131 TT--AAAAAATTAGTAAAAAAACCCTTACTTCGGCCCTTTGTTCATATTTTTTTCCAGAATTTTA
45746654 TTACTTTAAAAAAAATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTG
194 TTACTTTAAAAAAAATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTG
45746719 AAATTTAAATAAATTTAGTGTGTTTTTTAAATAAATTTTAAAAAAAACCCT
259 AAATTT--ATAAATTTAGTGTGTTTTTTAAATAAATTTTAAAAAAAACCCT
45746770 TATTTCGGCCATTTGCTCGTA-TTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTATTT
1 TATTTCGGCCATTTGCTCGTATTTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTA---
* * * *
45746834 TCGTATTTTATTTTTTACATTATTTTTACATTATTTTAGTATATTATGTTTGAAATGTTTTAATT
63 T--T-TTTT-TGTTTT--ATTA-GTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATT
** * ** * *
45746899 ATTTCTGTTTTTT-TTAATTTAGT-AAAAAACCCTTACTTCGGCCCTTTGTTCGTATTGTTTTCT
121 AAGTAT-TTTTTTAAAAAATTAGTAAAAAAACCCTTACTTCGGCCCTTTGTTCATATT-TTTT-T
* * *
45746962 CC-GCATTTTTTTACTTTAAAAAATAT-CATATTTTCTAATTTTATTATTTTACATTATTTTAGT
183 CCAGAATTTTATTACTTTAAAAAAAATAC-TATTTTCTAATTTTATTATTTTACATTATTTTAGT
*
45747025 ACATTATGTTTGAAATTTATTAATTTAGTGTGTTTTTTAAATA
247 ACATTATGTTTGAAATTTATAAATTTAGTGTGTTTTTTAAATA
45747068 TATAATTTTT
Statistics
Matches: 265, Mismatches: 19, Indels: 23
0.86 0.06 0.07
Matches are distributed among these distances:
310 40 0.15
311 20 0.08
313 1 0.00
315 1 0.00
316 28 0.11
317 36 0.14
318 85 0.32
319 7 0.03
320 41 0.15
321 6 0.02
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (307 bp):
TATTTCGGCCATTTGCTCGTATTTTTTTCCCGAATTTTATTACTTTCAATAAAAATATATTATTT
TTTTGTTTTATTAGTTTACATTATTTTAGTACATTATGTTTGAAATGTATTAATTAAGTATTTTT
TTAAAAAATTAGTAAAAAAACCCTTACTTCGGCCCTTTGTTCATATTTTTTTCCAGAATTTTATT
ACTTTAAAAAAAATACTATTTTCTAATTTTATTATTTTACATTATTTTAGTACATTATGTTTGAA
ATTTATAAATTTAGTGTGTTTTTTAAATAAATTTTAAAAAAAACCCT
Found at i:45747452 original size:4 final size:4
Alignment explanation
Indices: 45747443--45747520 Score: 56
Period size: 4 Copynumber: 18.8 Consensus size: 4
45747433 CTCTTTTCTT
45747443 TTTC TTTC TTCTCC TTTC -TT- TTTC TTTC TTTC TTCTCC TTTCC TTTTC
1 TTTC TTTC TT-T-C TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C -TTTC
*
45747491 TTTC -TT- TTTC GTTC TTTC TTTC TTCTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TT-TC TTT
45747521 TCCCTCTCCT
Statistics
Matches: 62, Mismatches: 2, Indels: 20
0.74 0.02 0.24
Matches are distributed among these distances:
3 8 0.13
4 34 0.55
5 11 0.18
6 9 0.15
ACGTcount: A:0.00, C:0.28, G:0.01, T:0.71
Consensus pattern (4 bp):
TTTC
Found at i:45747453 original size:20 final size:20
Alignment explanation
Indices: 45747428--45747522 Score: 104
Period size: 20 Copynumber: 4.7 Consensus size: 20
45747418 TTCCCTCTTC
45747428 TTCTTCTCTTTTCTTTTTCT
1 TTCTTCTCTTTTCTTTTTCT
*
45747448 TTCTTCTCCTTTCTTTTTCT
1 TTCTTCTCTTTTCTTTTTCT
* * *
45747468 TTCTT-TCTTCTCCTTTCCTT
1 TTCTTCTCTTTTCTTTTTC-T
45747488 TTCTT-TCTTTTTCGTTCTTTCT
1 TTCTTCTC-TTTTC-TT-TTTCT
45747510 TTCTTCTCTTTTC
1 TTCTTCTCTTTTC
45747523 CCTCTCCTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
19 9 0.15
20 32 0.52
21 4 0.06
22 12 0.19
23 5 0.08
ACGTcount: A:0.00, C:0.28, G:0.01, T:0.71
Consensus pattern (20 bp):
TTCTTCTCTTTTCTTTTTCT
Found at i:45747462 original size:14 final size:14
Alignment explanation
Indices: 45747443--45747522 Score: 61
Period size: 14 Copynumber: 6.3 Consensus size: 14
45747433 CTCTTTTCTT
45747443 TTTCTTTCTTCTCC
1 TTTCTTTCTTCTCC
45747457 TTTC-TT-TT-T-C
1 TTTCTTTCTTCTCC
45747467 TTTCTTTCTTCTCC
1 TTTCTTTCTTCTCC
*
45747481 TTTC---CTT-TTC
1 TTTCTTTCTTCTCC
*
45747491 TTTCTTT-TTCGTTC
1 TTTCTTTCTTC-TCC
*
45747505 TTTCTTTCTTCTCT
1 TTTCTTTCTTCTCC
45747519 TTTC
1 TTTC
45747523 CCTCTCCTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 20
0.70 0.04 0.26
Matches are distributed among these distances:
10 11 0.21
11 6 0.11
12 6 0.11
13 3 0.06
14 24 0.45
15 3 0.06
ACGTcount: A:0.00, C:0.29, G:0.01, T:0.70
Consensus pattern (14 bp):
TTTCTTTCTTCTCC
Found at i:45747475 original size:24 final size:24
Alignment explanation
Indices: 45747423--45747516 Score: 109
Period size: 24 Copynumber: 3.8 Consensus size: 24
45747413 CCTCCTTCCC
* *
45747423 TCTTCTTCTTCTCTTTTCTTTTTCTT
1 TCTTCTCCTT-TCTTTT-TCTTTCTT
45747449 TCTTCTCCTTTCTTTTTCTTTCTT
1 TCTTCTCCTTTCTTTTTCTTTCTT
*
45747473 TCTTCTCCTTTCCTTTTCTTTCTT
1 TCTTCTCCTTTCTTTTTCTTTCTT
*
45747497 T-TTCGTTCTTTCTTTCTTCT
1 TCTTC-TCCTTTCTTT-TTCT
45747517 CTTTTCCCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
23 3 0.05
24 39 0.64
25 10 0.16
26 9 0.15
ACGTcount: A:0.00, C:0.29, G:0.01, T:0.70
Consensus pattern (24 bp):
TCTTCTCCTTTCTTTTTCTTTCTT
Found at i:45747491 original size:44 final size:42
Alignment explanation
Indices: 45747428--45747536 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 42
45747418 TTCCCTCTTC
* * *
45747428 TTCTTCTCTTTTCTTTTTCTTTCTTCTCCTTTCTTTTTCTTTCT
1 TTCTTCTCCTTTCCTTTTCTTTCTTCTCCGTTC--TTTCTTTCT
* *
45747472 TTCTTCTCCTTTCCTTTTCTTTCTTTTTCGTTCTTTCTTTCT
1 TTCTTCTCCTTTCCTTTTCTTTCTTCTCCGTTCTTTCTTTCT
* *
45747514 TCTCTTTTCCCTCTCCTTTTCTT
1 T-TCTTCT-CCTTTCCTTTTCTT
45747537 CTCCACCCAC
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 10 0.18
43 5 0.09
44 41 0.73
ACGTcount: A:0.00, C:0.30, G:0.01, T:0.69
Consensus pattern (42 bp):
TTCTTCTCCTTTCCTTTTCTTTCTTCTCCGTTCTTTCTTTCT
Found at i:45747626 original size:27 final size:27
Alignment explanation
Indices: 45747578--45747638 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
45747568 ATAAGGGGAG
* *
45747578 TGGTGCCGCCTATGGCAGTGGCACCA-
1 TGGTGCCGCCTATGCCACTGGCACCAC
*
45747604 TCGGTGCCGCCTCTGCCACTGGCACCAC
1 T-GGTGCCGCCTATGCCACTGGCACCAC
45747632 TGGTGCC
1 TGGTGCC
45747639 ACCTGTGGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 1 0.03
27 28 0.93
28 1 0.03
ACGTcount: A:0.11, C:0.38, G:0.31, T:0.20
Consensus pattern (27 bp):
TGGTGCCGCCTATGCCACTGGCACCAC
Found at i:45747974 original size:16 final size:17
Alignment explanation
Indices: 45747948--45747980 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
45747938 ATGTTTATTC
45747948 TAAATTTATATTTTTAT
1 TAAATTTATATTTTTAT
45747965 TAAA-TTATATTTTTAT
1 TAAATTTATATTTTTAT
45747981 AACTTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TAAATTTATATTTTTAT
Found at i:45747997 original size:19 final size:19
Alignment explanation
Indices: 45747971--45748016 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
45747961 TTATTAAATT
45747971 ATATTTTT-ATAACTTTTATA
1 ATATTTTTAATAA-TTTT-TA
45747991 A-ATTTTTAATAATTTTTA
1 ATATTTTTAATAATTTTTA
45748009 ATATTTTT
1 ATATTTTT
45748017 TTACATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 3 0.12
19 16 0.67
20 5 0.21
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
ATATTTTTAATAATTTTTA
Found at i:45752449 original size:37 final size:37
Alignment explanation
Indices: 45752399--45752473 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
45752389 ATGATAGAAG
45752399 AAAGCTAGGTTTGTTCGTTGATCACTGTAGAGGTACT
1 AAAGCTAGGTTTGTTCGTTGATCACTGTAGAGGTACT
45752436 AAAGCTAGGTTTGTTCGTTGATCACTGTAGAGGTACT
1 AAAGCTAGGTTTGTTCGTTGATCACTGTAGAGGTACT
45752473 A
1 A
45752474 CAGTCGCAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (37 bp):
AAAGCTAGGTTTGTTCGTTGATCACTGTAGAGGTACT
Found at i:45753101 original size:10 final size:10
Alignment explanation
Indices: 45753068--45753103 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
45753058 AATTTAATTC
45753068 TTTTCTTTTA
1 TTTTCTTTTA
*
45753078 TGTTCTTTTAA
1 TTTTCTTTT-A
45753089 TTTTCTTTTA
1 TTTTCTTTTA
45753099 TTTTC
1 TTTTC
45753104 CATTCTTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.75
Consensus pattern (10 bp):
TTTTCTTTTA
Found at i:45760660 original size:14 final size:14
Alignment explanation
Indices: 45760641--45760669 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
45760631 AAAGAATTGG
45760641 AGCTAAAAGGATGC
1 AGCTAAAAGGATGC
45760655 AGCTAAAAGGATGC
1 AGCTAAAAGGATGC
45760669 A
1 A
45760670 TACATCCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (14 bp):
AGCTAAAAGGATGC
Found at i:45761125 original size:2 final size:2
Alignment explanation
Indices: 45761118--45761152 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
45761108 TTATATTAAA
* *
45761118 AG AG AG AG AA AG AG AG AG AG AC AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
45761153 AAGTACTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.54, C:0.03, G:0.43, T:0.00
Consensus pattern (2 bp):
AG
Found at i:45773188 original size:72 final size:71
Alignment explanation
Indices: 45773071--45773216 Score: 247
Period size: 72 Copynumber: 2.0 Consensus size: 71
45773061 TAGGCATTTT
* *
45773071 TGGAGCAAATAAACTGCCTAAGGCTGCACGGATCGTGTGGAAAAAAATCTAAGTCCGTGACATAT
1 TGGAGCAAATAAACTACCTAAGGCTGCACGAATCGTGTGG-AAAAAATCTAAGTCCGTGACATAT
45773136 GTATGTA
65 GTATGTA
* *
45773143 TGGAGCGAATAAACTACCTAAGGCTGCACGAATTGTGTGGAAAAAATCTAAGTCCGTGACATATG
1 TGGAGCAAATAAACTACCTAAGGCTGCACGAATCGTGTGGAAAAAATCTAAGTCCGTGACATATG
45773208 TATGTA
66 TATGTA
45773214 TGG
1 TGG
45773217 CCTACTAAAC
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
71 34 0.49
72 36 0.51
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (71 bp):
TGGAGCAAATAAACTACCTAAGGCTGCACGAATCGTGTGGAAAAAATCTAAGTCCGTGACATATG
TATGTA
Found at i:45784489 original size:13 final size:13
Alignment explanation
Indices: 45784471--45784496 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
45784461 TTTAATGTTC
45784471 TTTTTAAAAATTA
1 TTTTTAAAAATTA
45784484 TTTTTAAAAATTA
1 TTTTTAAAAATTA
45784497 AAAATCATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTTTAAAAATTA
Found at i:45784552 original size:35 final size:35
Alignment explanation
Indices: 45784488--45784554 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
45784478 AAATTATTTT
*
45784488 TAAAAATTAAAAATCATTAGAATTATTAAAATGTA
1 TAAAAATTAAAAATAATTAGAATTATTAAAATGTA
*
45784523 TAAAAATATAAAAA-AATTA-ATATTTTTAAAAT
1 TAAAAAT-TAAAAATAATTAGA-ATTATTAAAAT
45784555 TAATTAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 1 0.04
35 21 0.75
36 6 0.21
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (35 bp):
TAAAAATTAAAAATAATTAGAATTATTAAAATGTA
Found at i:45792071 original size:3 final size:3
Alignment explanation
Indices: 45792063--45792171 Score: 130
Period size: 3 Copynumber: 36.3 Consensus size: 3
45792053 TGGGTTGAGG
45792063 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
* * * * ** **
45792111 GAA GAA GAA AAA GAA GAA GAA CAA -TA GAA AAA TTA GGG GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
45792158 GAA GGAA GAA GAA G
1 GAA -GAA GAA GAA G
45792172 GGTGAGTTTG
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
2 1 0.01
3 87 0.96
4 3 0.03
ACGTcount: A:0.64, C:0.01, G:0.32, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:45792935 original size:17 final size:17
Alignment explanation
Indices: 45792908--45792940 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
45792898 TGTATTTTTA
45792908 TGAATTGTG-AATAAAG
1 TGAATTGTGAAATAAAG
45792924 TGAATATGTGAAATAAA
1 TGAAT-TGTGAAATAAA
45792941 AATGTAGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.30
Consensus pattern (17 bp):
TGAATTGTGAAATAAAG
Found at i:45793821 original size:23 final size:22
Alignment explanation
Indices: 45793795--45793838 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
45793785 TGATAAAATA
*
45793795 TTTTGGTATAACAAATTAAAGTG
1 TTTTGGAAT-ACAAATTAAAGTG
* *
45793818 TTTTTGAATACAAGTTAAAGT
1 TTTTGGAATACAAATTAAAGT
45793839 TTAACAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.41
Consensus pattern (22 bp):
TTTTGGAATACAAATTAAAGTG
Found at i:45798732 original size:9 final size:9
Alignment explanation
Indices: 45798706--45798760 Score: 51
Period size: 9 Copynumber: 6.1 Consensus size: 9
45798696 AACTTGTGAA
*
45798706 AATTGAGAA
1 AATTGAGAG
45798715 AATTGAGAG
1 AATTGAGAG
45798724 AATTGAGAG
1 AATTGAGAG
*
45798733 AGTT-AG-G
1 AATTGAGAG
*
45798740 AGATTAGAAAG
1 A-ATT-GAGAG
45798751 AATTGAGAG
1 AATTGAGAG
45798760 A
1 A
45798761 CCATGATGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
7 2 0.05
8 4 0.11
9 25 0.68
10 4 0.11
11 2 0.05
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.22
Consensus pattern (9 bp):
AATTGAGAG
Found at i:45799003 original size:5 final size:5
Alignment explanation
Indices: 45798993--45799023 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
45798983 ATAAATATGA
45798993 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
45799024 TTTTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:45800058 original size:21 final size:22
Alignment explanation
Indices: 45800028--45800072 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
45800018 GAGCAAATTG
45800028 TTGATTCTATTTCCTTTTTG-AT
1 TTGATTCTA-TTCCTTTTTGTAT
*
45800050 TTGA-TCTATTCTTTTTTGTAT
1 TTGATTCTATTCCTTTTTGTAT
45800071 TT
1 TT
45800073 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 8 0.38
22 4 0.19
ACGTcount: A:0.13, C:0.11, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGATTCTATTCCTTTTTGTAT
Found at i:45802873 original size:24 final size:24
Alignment explanation
Indices: 45802846--45802894 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
45802836 CTCAATTATA
45802846 CCGTGCTTGCATTAATCTTAAGTT
1 CCGTGCTTGCATTAATCTTAAGTT
45802870 CCGTGCTTGCATTAATCTTAAGTT
1 CCGTGCTTGCATTAATCTTAAGTT
45802894 C
1 C
45802895 ATAATCAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.41
Consensus pattern (24 bp):
CCGTGCTTGCATTAATCTTAAGTT
Found at i:45804869 original size:22 final size:22
Alignment explanation
Indices: 45804841--45804885 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
45804831 AGATTTTGAA
45804841 TTATGGTTTTGATTTTCGAATT
1 TTATGGTTTTGATTTTCGAATT
45804863 TTATGGTTTTGATTTTCGAATT
1 TTATGGTTTTGATTTTCGAATT
45804885 T
1 T
45804886 CAAGTTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.04, G:0.18, T:0.60
Consensus pattern (22 bp):
TTATGGTTTTGATTTTCGAATT
Found at i:45806201 original size:19 final size:18
Alignment explanation
Indices: 45806165--45806204 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
45806155 CTCAAATGCC
*
45806165 ATACAAATATATTATAAT
1 ATACAAATATAGTATAAT
45806183 ATACAAATAATAGTATAAT
1 ATACAAAT-ATAGTATAAT
45806202 ATA
1 ATA
45806205 ATATAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (18 bp):
ATACAAATATAGTATAAT
Found at i:45807614 original size:37 final size:37
Alignment explanation
Indices: 45807546--45807627 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
45807536 GAAAATTTTG
*
45807546 TGAGTGAACAAAAGCAATGTGAAGGTTAAAAGCATAA
1 TGAGTGAACAAAAGCAATGTGAAGGTCAAAAGCATAA
* **
45807583 TGAGTGAATAAAAGC-AT-TGAATGTGTCAAAAGCATTG
1 TGAGTGAACAAAAGCAATGTGAA-G-GTCAAAAGCATAA
45807620 TGAGTGAA
1 TGAGTGAA
45807628 AAGAGTGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
35 4 0.10
36 3 0.08
37 32 0.82
ACGTcount: A:0.44, C:0.07, G:0.26, T:0.23
Consensus pattern (37 bp):
TGAGTGAACAAAAGCAATGTGAAGGTCAAAAGCATAA
Found at i:45817648 original size:12 final size:12
Alignment explanation
Indices: 45817631--45817672 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
45817621 GAAAAAAAAA
45817631 ATGCATGTATGT
1 ATGCATGTATGT
*
45817643 ATGCATGCATGT
1 ATGCATGTATGT
*
45817655 ATGCATGTATGC
1 ATGCATGTATGT
45817667 ATGCAT
1 ATGCAT
45817673 ATATTAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (12 bp):
ATGCATGTATGT
Found at i:45817660 original size:8 final size:8
Alignment explanation
Indices: 45817631--45817669 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
45817621 GAAAAAAAAA
45817631 ATGCATGT
1 ATGCATGT
* *
45817639 ATGTATGC
1 ATGCATGT
45817647 ATGCATGT
1 ATGCATGT
45817655 ATGCATGT
1 ATGCATGT
45817663 ATGCATG
1 ATGCATG
45817670 CATATATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (8 bp):
ATGCATGT
Found at i:45821686 original size:20 final size:20
Alignment explanation
Indices: 45821661--45821702 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
45821651 TTGAGAACTA
*
45821661 AATCTAGTTCAGTTAGAATG
1 AATCTAGTTCAGTCAGAATG
45821681 AATCTAGTTCAGTCAGAATG
1 AATCTAGTTCAGTCAGAATG
45821701 AA
1 AA
45821703 CCAGCTAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (20 bp):
AATCTAGTTCAGTCAGAATG
Found at i:45828357 original size:67 final size:67
Alignment explanation
Indices: 45828249--45828385 Score: 274
Period size: 67 Copynumber: 2.0 Consensus size: 67
45828239 ATGCAAAGAT
45828249 TAAAATTAAACTAGTGACATTGCCTCCCCGACAACGGTGCCAACAACTTGATTGCCTCCGGACGT
1 TAAAATTAAACTAGTGACATTGCCTCCCCGACAACGGTGCCAACAACTTGATTGCCTCCGGACGT
45828314 AC
66 AC
45828316 TAAAATTAAACTAGTGACATTGCCTCCCCGACAACGGTGCCAACAACTTGATTGCCTCCGGACGT
1 TAAAATTAAACTAGTGACATTGCCTCCCCGACAACGGTGCCAACAACTTGATTGCCTCCGGACGT
45828381 AC
66 AC
45828383 TAA
1 TAA
45828386 CGTCCAGAGT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 70 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (67 bp):
TAAAATTAAACTAGTGACATTGCCTCCCCGACAACGGTGCCAACAACTTGATTGCCTCCGGACGT
AC
Found at i:45830902 original size:33 final size:33
Alignment explanation
Indices: 45830865--45830963 Score: 117
Period size: 33 Copynumber: 3.0 Consensus size: 33
45830855 CATGACATCC
* *
45830865 ACAAAGATAGTCCGCTAGGATAGTAAAGACATA
1 ACAAAGATAGTCCGCTAGGAAAGTAAACACATA
* * * *
45830898 ACAAAGTTAGTCCACTAGGACAGTAAACACAGA
1 ACAAAGATAGTCCGCTAGGAAAGTAAACACATA
* * *
45830931 ATAAAGAAAGTCAGCTAGGAAAGTAAACACATA
1 ACAAAGATAGTCCGCTAGGAAAGTAAACACATA
45830964 TAGTGTCTAG
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 54 1.00
ACGTcount: A:0.48, C:0.16, G:0.19, T:0.16
Consensus pattern (33 bp):
ACAAAGATAGTCCGCTAGGAAAGTAAACACATA
Found at i:45834425 original size:17 final size:17
Alignment explanation
Indices: 45834397--45834431 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
45834387 TAATTTTGGT
45834397 GGTTTAATAGTTCTTTAG
1 GGTTTAATAGTT-TTTAG
45834415 GGTTT-ATAGTTTTTAG
1 GGTTTAATAGTTTTTAG
45834431 G
1 G
45834432 TTAGGTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 6 0.35
18 5 0.29
ACGTcount: A:0.20, C:0.03, G:0.26, T:0.51
Consensus pattern (17 bp):
GGTTTAATAGTTTTTAG
Found at i:45834465 original size:10 final size:10
Alignment explanation
Indices: 45834437--45834484 Score: 60
Period size: 11 Copynumber: 4.5 Consensus size: 10
45834427 TTAGGTTAGG
45834437 TTTTCTTTCTC
1 TTTTCTTTC-C
45834448 TTTCTCTTTCC
1 TTT-TCTTTCC
45834459 TTTTCTTTCC
1 TTTTCTTTCC
*
45834469 TTTTCGTTTTC
1 TTTTC-TTTCC
45834480 TTTTC
1 TTTTC
45834485 ATTTTTAGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
10 12 0.35
11 16 0.47
12 6 0.18
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (10 bp):
TTTTCTTTCC
Found at i:45834465 original size:16 final size:16
Alignment explanation
Indices: 45834437--45834482 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
45834427 TTAGGTTAGG
45834437 TTTTCTTTCTCTTTCTC
1 TTTTCTTT-TCTTTCTC
*
45834454 TTTCCTTTTCTTTC-C
1 TTTTCTTTTCTTTCTC
45834469 TTTTCGTTTTCTTT
1 TTTTC-TTTTCTTT
45834483 TCATTTTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 5 0.19
16 14 0.54
17 7 0.27
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (16 bp):
TTTTCTTTTCTTTCTC
Found at i:45834527 original size:25 final size:26
Alignment explanation
Indices: 45834478--45834527 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
45834468 CTTTTCGTTT
** *
45834478 TCTTTTCATTTTTAGTTTAGGTTTTC
1 TCTTTTCATTTTTAGAGTAGATTTTC
45834504 TCTTTT-ATTTTTAGAGTAGATTTT
1 TCTTTTCATTTTTAGAGTAGATTTT
45834528 ATTTCTTCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.16, C:0.08, G:0.12, T:0.64
Consensus pattern (26 bp):
TCTTTTCATTTTTAGAGTAGATTTTC
Found at i:45845388 original size:41 final size:41
Alignment explanation
Indices: 45845331--45845414 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 41
45845321 TTGAACAAGA
* * *
45845331 AAACCTAAAGAGACAGTTGATTATGATTACTGAAGCAAGCT
1 AAACCCAAAAAGACAGTTGATTATGATTACCGAAGCAAGCT
*
45845372 AAACCCAAAAAGACAGTTGGTTATGATTACCGAAGCAAGCT
1 AAACCCAAAAAGACAGTTGATTATGATTACCGAAGCAAGCT
45845413 AA
1 AA
45845415 TCACCCATAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (41 bp):
AAACCCAAAAAGACAGTTGATTATGATTACCGAAGCAAGCT
Found at i:45846582 original size:18 final size:18
Alignment explanation
Indices: 45846551--45846588 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45846541 TAGGAAAATT
45846551 TAGGAAGTGCTGAAGACC
1 TAGGAAGTGCTGAAGACC
* *
45846569 TAGGATGTGTTGAAGACC
1 TAGGAAGTGCTGAAGACC
45846587 TA
1 TA
45846589 ATTCGGGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.24
Consensus pattern (18 bp):
TAGGAAGTGCTGAAGACC
Found at i:45848547 original size:25 final size:25
Alignment explanation
Indices: 45848516--45848563 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
45848506 TGTCTCATAC
*
45848516 GGCCGAGTCATACGCCCGTGTCTCT
1 GGCCGAGTCACACGCCCGTGTCTCT
45848541 GGCCGAGTCACACGCCCGTGTCT
1 GGCCGAGTCACACGCCCGTGTCT
45848564 TTGACCGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.12, C:0.38, G:0.29, T:0.21
Consensus pattern (25 bp):
GGCCGAGTCACACGCCCGTGTCTCT
Found at i:45849787 original size:75 final size:75
Alignment explanation
Indices: 45849708--45849879 Score: 229
Period size: 75 Copynumber: 2.3 Consensus size: 75
45849698 TGCACCTAGT
* *
45849708 GCTAGTCTGATAAACCGACGAAATCATTAGTGAG-CACAACTCTAGTAGGATAAACCAACAATAT
1 GCTAGTCAGATAAACCGACGAAATAATTAGTGAGTC-CAACTCTAGTAGGATAAACCAACAATAT
45849772 TTGTGCCCAAC
65 TTGTGCCCAAC
* * * * *
45849783 GCTAGTCAGATAAACCGATGAAATAATTAGTGAGTCCAGCTCTAGTTGGATAAATCAACGATATT
1 GCTAGTCAGATAAACCGACGAAATAATTAGTGAGTCCAACTCTAGTAGGATAAACCAACAATATT
*
45849848 TGTGCCCAGC
66 TGTGCCCAAC
* * *
45849858 GCTAATAAGATAAACCAACGAA
1 GCTAGTCAGATAAACCGACGAA
45849880 TGTGTGTCCC
Statistics
Matches: 84, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
75 83 0.99
76 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (75 bp):
GCTAGTCAGATAAACCGACGAAATAATTAGTGAGTCCAACTCTAGTAGGATAAACCAACAATATT
TGTGCCCAAC
Found at i:45849795 original size:35 final size:35
Alignment explanation
Indices: 45849756--45849906 Score: 92
Period size: 35 Copynumber: 4.2 Consensus size: 35
45849746 ACTCTAGTAG
45849756 GATAAACCAACAATATTTGTGCCCAACGCTAGTCA
1 GATAAACCAACAATATTTGTGCCCAACGCTAGTCA
* * * * **
45849791 GATAAACCGATGA-AATAATTAGTGAGTCCAGCTCTAGTTG
1 GATAAACC-A--ACAAT-ATT--TGTGCCCAACGCTAGTCA
* * * * *
45849831 GATAAATCAACGATATTTGTGCCCAGCGCTAATAA
1 GATAAACCAACAATATTTGTGCCCAACGCTAGTCA
* * *
45849866 GATAAACCAACGA-ATGTGTGTCCC-ACACTAGTCA
1 GATAAACCAACAATATTTGTG-CCCAACGCTAGTCA
45849900 GATAAAC
1 GATAAAC
45849907 TGACGAAAGT
Statistics
Matches: 88, Mismatches: 20, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
34 19 0.22
35 35 0.40
36 1 0.01
37 7 0.08
38 6 0.07
39 1 0.01
40 19 0.22
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (35 bp):
GATAAACCAACAATATTTGTGCCCAACGCTAGTCA
Found at i:45852813 original size:36 final size:37
Alignment explanation
Indices: 45852761--45853177 Score: 488
Period size: 36 Copynumber: 11.4 Consensus size: 37
45852751 AAAGGGGAAC
* *
45852761 ACTGATTCTACT-AAAGTGCTC-AAGGAGTAATATCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
* * *
45852796 ACTAATACTACTGAAAGTGCTC-AACAAGCAATATCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
* * * *
45852832 ACTGATCCTATTGAATGTGCTCAAACGAGCAATGTCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
* *
45852869 ACTGATTCTACTGAAAGTTCTCAAACGTGCAATATCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
* **
45852906 ATTGATTCTACTGAAAGCACTC-AACGAGCAATATCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
* * *
45852942 ACTGATCCTACTGAATGTGCTCAAACGAGCAATGTCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
*
45852979 ATTGATTCTACTG-AAGTGCTCAAACGAGCAATATCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
* *
45853015 ACTGATTCTACTGAAAGTGCTC-AACAATCAATATCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
* * * * *
45853051 ACTGATCCTATTGAACGTGCTCAAAAGAGCAATGTCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
*
45853088 ACTGGTTCTACTG-AAGTGCTCAAACGAGCAATATCT
1 ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
* * * *
45853124 ACTAATTCTATTGAATAGTTGCTCAAACAAGCAATATCC
1 ACTGATTCTACTGAA-AG-TGCTCAAACGAGCAATATCT
*
45853163 ACTGATTATACTGAA
1 ACTGATTCTACTGAA
45853178 TGTTTGCTTA
Statistics
Matches: 319, Mismatches: 55, Indels: 12
0.83 0.14 0.03
Matches are distributed among these distances:
35 10 0.03
36 162 0.51
37 115 0.36
38 2 0.01
39 30 0.09
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (37 bp):
ACTGATTCTACTGAAAGTGCTCAAACGAGCAATATCT
Found at i:45852880 original size:73 final size:74
Alignment explanation
Indices: 45852761--45853177 Score: 479
Period size: 73 Copynumber: 5.7 Consensus size: 74
45852751 AAAGGGGAAC
* * * * * * *
45852761 ACTGATTCTACT-AAAGTGCTC-AAGGAGTAATATCTACTAATACTACTGAAAGTGCTC-AACAA
1 ACTGATTCTATTGAATGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGA
45852823 GCAATATCT
66 GCAATATCT
* * * *
45852832 ACTGATCCTATTGAATGTGCTCAAACGAGCAATGTCTACTGATTCTACTGAAAGTTCTCAAACGT
1 ACTGATTCTATTGAATGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGA
45852897 GCAATATCT
66 GCAATATCT
* * * ** * *
45852906 ATTGATTCTACTGAAAGCACTC-AACGAGCAATATCTACTGATCCTACTGAATGTGCTCAAACGA
1 ACTGATTCTATTGAATGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGA
*
45852970 GCAATGTCT
66 GCAATATCT
* * *
45852979 ATTGATTCTACTGAA-GTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTC-AACAA
1 ACTGATTCTATTGAATGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGA
*
45853042 TCAATATCT
66 GCAATATCT
* * * * *
45853051 ACTGATCCTATTGAACGTGCTCAAAAGAGCAATGTCTACTGGTTCTACTG-AAGTGCTCAAACGA
1 ACTGATTCTATTGAATGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGA
45853115 GCAATATCT
66 GCAATATCT
* * * *
45853124 ACTAATTCTATTGAATAGTTGCTCAAACAAGCAATATCCACTGATTATACTGAA
1 ACTGATTCTATTGAAT-G-TGCTCAAACGAGCAATATCTACTGATTCTACTGAA
45853178 TGTTTGCTTA
Statistics
Matches: 290, Mismatches: 47, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
71 10 0.03
72 43 0.15
73 180 0.62
74 29 0.10
75 27 0.09
76 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (74 bp):
ACTGATTCTATTGAATGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTCAAACGA
GCAATATCT
Found at i:45853071 original size:109 final size:109
Alignment explanation
Indices: 45852761--45853168 Score: 593
Period size: 109 Copynumber: 3.7 Consensus size: 109
45852751 AAAGGGGAAC
* * * *
45852761 ACTGATTCTACTAAAGTGCTC-AAGGAGTAATATCTACTAATACTACTGAAAGTGCTCAACAAGC
1 ACTGATTCTACTGAAGTGCTCAAACGAGCAATATCTACTAATTCTACTGAAAGTGCTCAACAAGC
45852825 AATATCTACTGATCCTATTGAATGTGCTCAAACGAGCAATGTCT
66 AATATCTACTGATCCTATTGAATGTGCTCAAACGAGCAATGTCT
* * * * ** *
45852869 ACTGATTCTACTGAAAGTTCTCAAACGTGCAATATCTATTGATTCTACTGAAAGCACTCAACGAG
1 ACTGATTCTACTG-AAGTGCTCAAACGAGCAATATCTACTAATTCTACTGAAAGTGCTCAACAAG
*
45852934 CAATATCTACTGATCCTACTGAATGTGCTCAAACGAGCAATGTCT
65 CAATATCTACTGATCCTATTGAATGTGCTCAAACGAGCAATGTCT
* * *
45852979 ATTGATTCTACTGAAGTGCTCAAACGAGCAATATCTACTGATTCTACTGAAAGTGCTCAACAATC
1 ACTGATTCTACTGAAGTGCTCAAACGAGCAATATCTACTAATTCTACTGAAAGTGCTCAACAAGC
* *
45853044 AATATCTACTGATCCTATTGAACGTGCTCAAAAGAGCAATGTCT
66 AATATCTACTGATCCTATTGAATGTGCTCAAACGAGCAATGTCT
* *
45853088 ACTGGTTCTACTGAAGTGCTCAAACGAGCAATATCTACTAATTCTATTGAATAGTTGCTCAAACA
1 ACTGATTCTACTGAAGTGCTCAAACGAGCAATATCTACTAATTCTACTGAA-AG-TGCTC-AACA
*
45853153 AGCAATATCCACTGAT
63 AGCAATATCTACTGAT
45853169 TATACTGAAT
Statistics
Matches: 266, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
108 12 0.05
109 140 0.53
110 91 0.34
111 5 0.02
112 18 0.07
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (109 bp):
ACTGATTCTACTGAAGTGCTCAAACGAGCAATATCTACTAATTCTACTGAAAGTGCTCAACAAGC
AATATCTACTGATCCTATTGAATGTGCTCAAACGAGCAATGTCT
Found at i:45855761 original size:25 final size:25
Alignment explanation
Indices: 45855724--45855831 Score: 117
Period size: 25 Copynumber: 4.3 Consensus size: 25
45855714 AAACAAGACC
* * *
45855724 AAGCCTTTGTGGTGAATTTTTTAAA
1 AAGCCTTTATGGTGAATTATCTAAA
45855749 AAGCCTTTATGGTGAATTATCTAAA
1 AAGCCTTTATGGTGAATTATCTAAA
* ** *
45855774 AAGCATTTATGGCAAATTATCTGAA
1 AAGCCTTTATGGTGAATTATCTAAA
* * * *
45855799 AATCCTTTACGGTAAATTATCTGAA
1 AAGCCTTTATGGTGAATTATCTAAA
45855824 AAGCCTTT
1 AAGCCTTT
45855832 GTGGCATATT
Statistics
Matches: 71, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 71 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (25 bp):
AAGCCTTTATGGTGAATTATCTAAA
Found at i:45855827 original size:50 final size:49
Alignment explanation
Indices: 45855747--45855866 Score: 141
Period size: 50 Copynumber: 2.4 Consensus size: 49
45855737 GAATTTTTTA
* *
45855747 AAAAGCCTTTATGGTGAATTATCTAAAAAGCATTTATGGCAAATTATCTG
1 AAAAGCCTTTA-GGTAAATTATCTAAAAAGCATTTATGGCAAATTACCTG
* * * * *
45855797 AAAATCCTTTACGGTAAATTATCTGAAAAGCCTTTGTGGCATATTACCTG
1 AAAAGCCTTTA-GGTAAATTATCTAAAAAGCATTTATGGCAAATTACCTG
*
45855847 GAAAGCCTTTGAGGTAAATT
1 AAAAGCCTTT-AGGTAAATT
45855867 CTATAACGAC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 58 0.98
51 1 0.02
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.33
Consensus pattern (49 bp):
AAAAGCCTTTAGGTAAATTATCTAAAAAGCATTTATGGCAAATTACCTG
Found at i:45855842 original size:25 final size:25
Alignment explanation
Indices: 45855747--45855856 Score: 121
Period size: 25 Copynumber: 4.4 Consensus size: 25
45855737 GAATTTTTTA
** *
45855747 AAAAGCCTTTATGGTGAATTATCTA
1 AAAAGCCTTTATGGCAAATTATCTG
*
45855772 AAAAGCATTTATGGCAAATTATCTG
1 AAAAGCCTTTATGGCAAATTATCTG
* * *
45855797 AAAATCCTTTACGGTAAATTATCTG
1 AAAAGCCTTTATGGCAAATTATCTG
* * *
45855822 AAAAGCCTTTGTGGCATATTACCTG
1 AAAAGCCTTTATGGCAAATTATCTG
*
45855847 GAAAGCCTTT
1 AAAAGCCTTT
45855857 GAGGTAAATT
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 70 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (25 bp):
AAAAGCCTTTATGGCAAATTATCTG
Found at i:45857170 original size:16 final size:17
Alignment explanation
Indices: 45857146--45857190 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
45857136 GTTTAATTGA
*
45857146 TTTAGTTGTTTGTTTAT
1 TTTAGTTGTTTATTTAT
45857163 TTTA-TTGTTTATTTAT
1 TTTAGTTGTTTATTTAT
*
45857179 TTTAGTTATTTA
1 TTTAGTTGTTTA
45857191 ATTTTTAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 15 0.60
17 10 0.40
ACGTcount: A:0.18, C:0.00, G:0.11, T:0.71
Consensus pattern (17 bp):
TTTAGTTGTTTATTTAT
Found at i:45861233 original size:12 final size:12
Alignment explanation
Indices: 45861216--45861240 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45861206 AAAATTAGAG
45861216 TTAGTAAAATTA
1 TTAGTAAAATTA
45861228 TTAGTAAAATTA
1 TTAGTAAAATTA
45861240 T
1 T
45861241 GAGCAAACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
TTAGTAAAATTA
Found at i:45862566 original size:26 final size:26
Alignment explanation
Indices: 45862534--45862583 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
45862524 AAACTATCTG
*
45862534 TTTAATATATTTTTATATTAACCTAT
1 TTTAATATATTTTGATATTAACCTAT
45862560 TTTAATATATTTTGATATTAACCT
1 TTTAATATATTTTGATATTAACCT
45862584 CATAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.08, G:0.02, T:0.56
Consensus pattern (26 bp):
TTTAATATATTTTGATATTAACCTAT
Found at i:45872640 original size:17 final size:17
Alignment explanation
Indices: 45872615--45872648 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
45872605 GGTTCGCAAC
45872615 TTACATAAACACACAAA
1 TTACATAAACACACAAA
* *
45872632 TTACTTAAACAGACAAA
1 TTACATAAACACACAAA
45872649 GCTTAAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.21, G:0.03, T:0.21
Consensus pattern (17 bp):
TTACATAAACACACAAA
Found at i:45873892 original size:4 final size:4
Alignment explanation
Indices: 45873880--45873910 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
45873870 TAAAATTAGT
45873880 TAAA T-AA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
45873911 AAGGATAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:45874273 original size:32 final size:31
Alignment explanation
Indices: 45874211--45874304 Score: 179
Period size: 31 Copynumber: 3.0 Consensus size: 31
45874201 AGGCAAATTA
45874211 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
45874242 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
45874274 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
45874305 AAAATTATCT
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
31 31 0.50
32 31 0.50
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:45878852 original size:13 final size:13
Alignment explanation
Indices: 45878834--45878879 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
45878824 GTAAGCAACT
*
45878834 TTTTTTTTTGCGC
1 TTTTTTTTTGTGC
*
45878847 TTTTTTGCTTTTTGC
1 TTTTTT--TTTGTGC
45878862 TTTTTTTTTGTGC
1 TTTTTTTTTGTGC
45878875 TTTTT
1 TTTTT
45878880 ACTCTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 17 0.61
15 11 0.39
ACGTcount: A:0.00, C:0.11, G:0.13, T:0.76
Consensus pattern (13 bp):
TTTTTTTTTGTGC
Found at i:45878870 original size:20 final size:20
Alignment explanation
Indices: 45878847--45878912 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
45878837 TTTTTTGCGC
*
45878847 TTTTTTGCTTTTTGCTTTTT
1 TTTTTTGCTTTTTACTTTTT
* *
45878867 TTTTGTGCTTTTTACTCTTT
1 TTTTTTGCTTTTTACTTTTT
***
45878887 TTTTGCACTTTTTACTCTTTT
1 TTTTTTGCTTTTTACT-TTTT
45878908 TTTTT
1 TTTTT
45878913 CGTTTTTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 31 0.82
21 7 0.18
ACGTcount: A:0.05, C:0.14, G:0.08, T:0.74
Consensus pattern (20 bp):
TTTTTTGCTTTTTACTTTTT
Found at i:45878887 original size:28 final size:28
Alignment explanation
Indices: 45878834--45878887 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
45878824 GTAAGCAACT
*
45878834 TTTTTTTTTGCGCTTTTTTGCTTTTTGC
1 TTTTTTTTTGCGCTTTTTTACTTTTTGC
*
45878862 TTTTTTTTTGTGC-TTTTTACTCTTTT
1 TTTTTTTTTGCGCTTTTTTACT-TTTT
45878888 TTTGCACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.02, C:0.13, G:0.11, T:0.74
Consensus pattern (28 bp):
TTTTTTTTTGCGCTTTTTTACTTTTTGC
Found at i:45878918 original size:20 final size:20
Alignment explanation
Indices: 45878861--45878919 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
45878851 TTGCTTTTTG
*
45878861 CTTTTTTTTTGTGCTTTTTACT
1 CTTTTTTTTT-CG-TTTTTACT
* *
45878883 C-TTTTTTTGCACTTTTTACT
1 CTTTTTTTTTC-GTTTTTACT
45878903 CTTTTTTTTTCGTTTTT
1 CTTTTTTTTTCGTTTTT
45878920 TTTGCTTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
20 14 0.47
21 15 0.50
22 1 0.03
ACGTcount: A:0.05, C:0.15, G:0.07, T:0.73
Consensus pattern (20 bp):
CTTTTTTTTTCGTTTTTACT
Found at i:45878942 original size:9 final size:9
Alignment explanation
Indices: 45878905--45878967 Score: 63
Period size: 9 Copynumber: 6.4 Consensus size: 9
45878895 TTTTTACTCT
45878905 TTTTTTTTCG
1 TTTTTTTT-G
45878915 TTTTTTTTG
1 TTTTTTTTG
*
45878924 CTTTTTTTG
1 TTTTTTTTG
45878933 TTTTTTTTG
1 TTTTTTTTG
*
45878942 TTGGCTTTGTTG
1 TT---TTTTTTG
45878954 TTTTTTTTG
1 TTTTTTTTG
45878963 CTTTT
1 -TTTT
45878968 ATTTAAAGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
9 25 0.56
10 12 0.27
12 8 0.18
ACGTcount: A:0.00, C:0.06, G:0.14, T:0.79
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:45879577 original size:32 final size:31
Alignment explanation
Indices: 45879515--45879608 Score: 179
Period size: 31 Copynumber: 3.0 Consensus size: 31
45879505 AGGCAAATTA
45879515 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
45879546 CAAGAGTAATTGAATCCTAATAAAAACTCTTT
1 CAAGAGTAATTGAATCCTAAT-AAAACTCTTT
45879578 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
45879609 AAAATTATCT
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
31 31 0.50
32 31 0.50
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:45880469 original size:21 final size:22
Alignment explanation
Indices: 45880431--45880473 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
45880421 GCTTCATCGA
*
45880431 AAAGGTTGAGGCTTCAAGTCTT
1 AAAGGTTGAGGATTCAAGTCTT
45880453 AAAGGTTG-GGATTCAAGTCTT
1 AAAGGTTGAGGATTCAAGTCTT
45880474 TATCATTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (22 bp):
AAAGGTTGAGGATTCAAGTCTT
Found at i:45881328 original size:6 final size:7
Alignment explanation
Indices: 45881306--45881348 Score: 50
Period size: 7 Copynumber: 5.7 Consensus size: 7
45881296 AATTTAAAGA
45881306 TTTAATT
1 TTTAATT
45881313 TTTAATT
1 TTTAATT
45881320 TTTAATTTT
1 TTTAA--TT
45881329 TTTAATT
1 TTTAATT
*
45881336 TTCATATT
1 TTTA-ATT
45881344 TTTAA
1 TTTAA
45881349 ATGTAAAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
7 18 0.58
8 6 0.19
9 7 0.23
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (7 bp):
TTTAATT
Found at i:45881345 original size:16 final size:16
Alignment explanation
Indices: 45881311--45881346 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
45881301 AAAGATTTAA
*
45881311 TTTTTAATTTTTAATT
1 TTTTTAATTTTCAATT
45881327 TTTTTAATTTTCATATT
1 TTTTTAATTTTCA-ATT
45881344 TTT
1 TTT
45881347 AAATGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTAATTTTCAATT
Found at i:45881911 original size:2 final size:2
Alignment explanation
Indices: 45881904--45881936 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
45881894 TTAAGATCTC
45881904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45881937 TTTCATTCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:45887410 original size:18 final size:18
Alignment explanation
Indices: 45887387--45887423 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45887377 TTTCAAAAAC
45887387 ACAATATAAAAT-GAAATA
1 ACAATA-AAAATAGAAATA
45887405 ACAATAAAAATAGAAATA
1 ACAATAAAAATAGAAATA
45887423 A
1 A
45887424 TGTTTAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.19
Consensus pattern (18 bp):
ACAATAAAAATAGAAATA
Found at i:45897645 original size:3 final size:3
Alignment explanation
Indices: 45897630--45897659 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
45897620 CACGTTTTGT
*
45897630 TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
45897660 CTTAACCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:45898813 original size:13 final size:13
Alignment explanation
Indices: 45898795--45898826 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
45898785 CTATGAACTC
45898795 TGTTTTCAACTTA
1 TGTTTTCAACTTA
*
45898808 TGTTTTCAAGTTA
1 TGTTTTCAACTTA
45898821 TGTTTT
1 TGTTTT
45898827 ATATATGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.19, C:0.09, G:0.12, T:0.59
Consensus pattern (13 bp):
TGTTTTCAACTTA
Found at i:45912185 original size:7 final size:7
Alignment explanation
Indices: 45912165--45912198 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
45912155 TCATTGTAAA
45912165 GGTTTAG
1 GGTTTAG
45912172 GGTTTTAG
1 GG-TTTAG
*
45912180 AGTTTAG
1 GGTTTAG
45912187 GGTTTAG
1 GGTTTAG
45912194 GGTTT
1 GGTTT
45912199 TAGCCAAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.15, C:0.00, G:0.38, T:0.47
Consensus pattern (7 bp):
GGTTTAG
Found at i:45920458 original size:41 final size:41
Alignment explanation
Indices: 45920401--45920515 Score: 196
Period size: 41 Copynumber: 2.8 Consensus size: 41
45920391 GAATGTAATA
* *
45920401 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
45920442 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
45920483 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 CAGACTATATGTCTAGCAGGCTTAA-TGCCGGTG
45920516 TACTGAATCA
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
40 3 0.04
41 68 0.96
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (41 bp):
CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:45927989 original size:41 final size:41
Alignment explanation
Indices: 45927932--45928169 Score: 442
Period size: 41 Copynumber: 5.8 Consensus size: 41
45927922 GAATGTAATA
* *
45927932 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
45927973 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
45928014 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
45928055 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
45928096 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
45928137 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 CAGACTATATGTCTAGCAGGCTTAA-TGCCGGTG
45928170 TACTGAATCA
Statistics
Matches: 194, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
40 3 0.02
41 191 0.98
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (41 bp):
CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:45928194 original size:123 final size:123
Alignment explanation
Indices: 45927932--45928211 Score: 449
Period size: 123 Copynumber: 2.3 Consensus size: 123
45927922 GAATGTAATA
45927932 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
*
45927997 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
66 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATAT
* *
45928055 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
45928120 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
66 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAA-TGCCGGTGATACAT--AT
* * **
45928178 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
45928212 ATCTGTTTAA
Statistics
Matches: 145, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
121 1 0.01
122 6 0.04
123 138 0.95
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (123 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATAT
Found at i:45929878 original size:38 final size:38
Alignment explanation
Indices: 45929822--45929928 Score: 142
Period size: 38 Copynumber: 2.8 Consensus size: 38
45929812 ATTTCCAATT
* ** *
45929822 ATAAATCTTATGAGCAAACTGGTGTATTATTGGATGGA
1 ATAACTCTTATGAGCAAACTGGTGTATTATCAGATGAA
*
45929860 ATAACTCTTATGAGCAAACTGGTGTGTTATCAGATGAA
1 ATAACTCTTATGAGCAAACTGGTGTATTATCAGATGAA
* * *
45929898 ATAGCTCTTATGAGCAAACTGGCGTGTTATC
1 ATAACTCTTATGAGCAAACTGGTGTATTATC
45929929 GGTTGGTTAC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (38 bp):
ATAACTCTTATGAGCAAACTGGTGTATTATCAGATGAA
Found at i:45931343 original size:2 final size:2
Alignment explanation
Indices: 45931336--45931370 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
45931326 GGTCTTTAAA
*
45931336 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT TT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
45931371 ATGTCTCCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:45938285 original size:20 final size:21
Alignment explanation
Indices: 45938260--45938298 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
45938250 CCTTAAACCT
45938260 TTAAACCCCAAA-CCTAAATC
1 TTAAACCCCAAACCCTAAATC
45938280 TTAAACCCCAAACCCTAAA
1 TTAAACCCCAAACCCTAAA
45938299 CCTCGAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (21 bp):
TTAAACCCCAAACCCTAAATC
Found at i:45938299 original size:42 final size:42
Alignment explanation
Indices: 45938199--45938301 Score: 104
Period size: 42 Copynumber: 2.5 Consensus size: 42
45938189 TGTAACTTGT
* * *
45938199 AACCCTAAACCCTACACTTTTAAACCCAAACCTCAAACACTA
1 AACCCCAAACCCTAAACCTTTAAACCCAAACCTCAAACACTA
* * *
45938241 AA-CTCATAACCTTAAACCTTTAAACCCCAAACCT-AAATC-TTA
1 AACCCCA-AACCCTAAACCTTTAAA-CCCAAACCTCAAA-CACTA
45938283 AACCCCAAACCCTAAACCT
1 AACCCCAAACCCTAAACCT
45938302 CGAGGTTTGA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
41 2 0.04
42 34 0.69
43 13 0.27
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (42 bp):
AACCCCAAACCCTAAACCTTTAAACCCAAACCTCAAACACTA
Found at i:45939116 original size:34 final size:34
Alignment explanation
Indices: 45939078--45939142 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
45939068 AAAAAACCCC
* * *
45939078 TAAACCTTACTTTAAACAAATAAAAACCTAACCT
1 TAAACCCTAATTTAAACAAACAAAAACCTAACCT
* *
45939112 TAAACCCTAATTTAAATAAACAAAACCCTAA
1 TAAACCCTAATTTAAACAAACAAAAACCTAA
45939143 TCCTAAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.25
Consensus pattern (34 bp):
TAAACCCTAATTTAAACAAACAAAAACCTAACCT
Found at i:45943626 original size:24 final size:24
Alignment explanation
Indices: 45943588--45943839 Score: 152
Period size: 24 Copynumber: 10.8 Consensus size: 24
45943578 TGAATTGGAT
* *
45943588 AATTTACAATAAATAATATATAATA
1 AATTTAAAAT-AATAATATATGATA
* *
45943613 AATTTGAAATAATAATACAT-ATAA
1 AATTTAAAATAATAATATATGAT-A
*
45943637 AATTT-AAA-AAT--TTTGATGAT-
1 AATTTAAAATAATAATAT-ATGATA
* * *
45943657 AATTCTAGAATAATCATACATGATA
1 AATT-TAAAATAATAATATATGATA
** * *
45943682 AATCCAAAATAATAGTATATAATA
1 AATTTAAAATAATAATATATGATA
*
45943706 AATTT-AAA-AATATTA-ATGATA
1 AATTTAAAATAATAATATATGATA
* *
45943727 AATTTGAAATAGAT-ATACATGATA
1 AATTTAAAATA-ATAATATATGATA
** ** *
45943751 AATTTAAAATAATGTTA-ACAATG
1 AATTTAAAATAATAATATATGATA
45943774 AATTTAAAATAATAATAT-TGATA
1 AATTTAAAATAATAATATATGATA
* *
45943797 AA-TTACAAATAATAAAACATGATA
1 AATTTA-AAATAATAATATATGATA
*
45943821 AATCTAAAATAATAATATA
1 AATTTAAAATAATAATATA
45943840 CAATACACTT
Statistics
Matches: 174, Mismatches: 35, Indels: 37
0.71 0.14 0.15
Matches are distributed among these distances:
20 5 0.03
21 13 0.07
22 19 0.11
23 48 0.28
24 75 0.43
25 14 0.08
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.34
Consensus pattern (24 bp):
AATTTAAAATAATAATATATGATA
Found at i:45943660 original size:69 final size:67
Alignment explanation
Indices: 45943585--45943873 Score: 199
Period size: 69 Copynumber: 4.1 Consensus size: 67
45943575 ACATGAATTG
* * * *
45943585 GATAATTTACAATAAATAATATATAATAAATTTGAAATAATAATACAT-ATAAAATTTAAAAATT
1 GATAATTTA-AATAAAT-ATACATGATAAATTTAAAATAATAATACATAAT-AAATTTAAAAATA
*
45943649 TTGAT
63 TTAAT
** * *
45943654 GATAATTCTAGAAT-AATCATACATGATAAATCCAAAATAATAGTATATAATAAATTTAAAAATA
1 GATAATT-TA-AATAAAT-ATACATGATAAATTTAAAATAATAATACATAATAAATTTAAAAATA
45943718 TTAAT
63 TTAAT
* ** * *
45943723 GATAAATTTGAAATAGATATACATGATAAATTTAAAATAATGTTA-ACAATGAATTTAAAATAAT
1 GAT-AATTT-AAATAAATATACATGATAAATTTAAAATAATAATACATAATAAATTT-AAA-AAT
* *
45943787 AATATT
62 ATTAAT
* * * * * * * *
45943793 GATAAATTACAA-ATAATAAAACATGATAAATCTAAAATAATAATATACAATACACTTAGATAAT
1 GATAATTTA-AATA-AAT-ATACATGATAAATTTAAAATAATAATACATAATAAATTTA-AAAAT
45943857 ATTAAT
62 ATTAAT
45943863 GATTAATTTAA
1 GA-TAATTTAA
45943874 TAATAAGTAT
Statistics
Matches: 174, Mismatches: 33, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
68 11 0.06
69 90 0.52
70 58 0.33
71 15 0.09
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (67 bp):
GATAATTTAAATAAATATACATGATAAATTTAAAATAATAATACATAATAAATTTAAAAATATTA
AT
Found at i:45943819 original size:70 final size:68
Alignment explanation
Indices: 45943598--45943844 Score: 204
Period size: 69 Copynumber: 3.6 Consensus size: 68
45943588 AATTTACAAT
* * * ** *
45943598 AAATAATAT--ATAATAAATTTGAAATAATA--ATACATATAAAATTTAAAAATTTTGATGAT-A
1 AAATAATATACATGATAAATCTAAAATAATAGTATACA-AT-AAATTTAAAAATAATAATGATAA
45943658 ATT-C
64 ATTAC
* * *
45943662 TAGAATAATCATACATGATAAATCCAAAATAATAGTATATAATAAATTTAAAAATATTAATGATA
1 -A-AATAAT-ATACATGATAAATCTAAAATAATAGTATACAATAAATTTAAAAATAATAATGATA
**
45943727 AATTTG
63 AATTAC
* * *
45943733 AAATAGATATACATGATAAATTTAAAATAAT-GT-TAACAATGAATTTAAAATAATAATATTGAT
1 AAATA-ATATACATGATAAATCTAAAATAATAGTAT-ACAATAAATTT-AAA-AATAATAATGAT
45943796 AAATTAC
62 AAATTAC
* *
45943803 AAATAATAAAACATGATAAATCTAAAATAATAATATACAATA
1 AAATAAT-ATACATGATAAATCTAAAATAATAGTATACAATA
45943845 CACTTAGATA
Statistics
Matches: 147, Mismatches: 20, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
65 1 0.01
66 6 0.04
67 3 0.02
68 11 0.07
69 65 0.44
70 50 0.34
71 10 0.07
72 1 0.01
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.34
Consensus pattern (68 bp):
AAATAATATACATGATAAATCTAAAATAATAGTATACAATAAATTTAAAAATAATAATGATAAAT
TAC
Found at i:45943856 original size:70 final size:67
Alignment explanation
Indices: 45943665--45943870 Score: 189
Period size: 70 Copynumber: 3.0 Consensus size: 67
45943655 ATAATTCTAG
* * * * *
45943665 AATAATCATACATGATAAATCCAAAATAATAGTATATAATAAATTTAAAAATATTAATGATAAAT
1 AATAAT-ATACATGATAAATCTAAAATAATAATATACAAT-AATTTAATAATAATAATGATAAAT
**
45943730 TTGA
64 TACA
* ** *
45943734 AATAGATATACATGATAAATTTAAAATAATGTTA-ACAATGAATTTAAAATAATAATATTGATAA
1 AATA-ATATACATGATAAATCTAAAATAATAATATACAAT-AATTT--AATAATAATAATGATAA
45943798 ATTACA
62 ATTACA
* * * *
45943804 AATAATAAAACATGATAAATCTAAAATAATAATATACAATACACTTAGATAATATTAATGATTAA
1 AATAAT-ATACATGATAAATCTAAAATAATAATATACAATA-ATTTA-ATAATAATAATGATAAA
45943869 TT
63 TT
45943871 TAATAATAAG
Statistics
Matches: 111, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
68 9 0.08
69 30 0.27
70 64 0.58
71 8 0.07
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (67 bp):
AATAATATACATGATAAATCTAAAATAATAATATACAATAATTTAATAATAATAATGATAAATTA
CA
Found at i:45944696 original size:22 final size:21
Alignment explanation
Indices: 45944671--45944746 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 21
45944661 TACAAATTAA
45944671 ATCTCTAAGATTACAAAATCTT
1 ATCTCTAAGATTAC-AAATCTT
* *
45944693 ATCTTCTAAGATTGCATATCTT
1 ATC-TCTAAGATTACAAATCTT
* *
45944715 A--TCTAAGATTGCATATC--
1 ATCTCTAAGATTACAAATCTT
*
45944732 ATATCTAAGATTACA
1 ATCTCTAAGATTACA
45944747 TATCCTTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
17 1 0.02
19 27 0.56
22 10 0.21
23 10 0.21
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (21 bp):
ATCTCTAAGATTACAAATCTT
Found at i:45944704 original size:23 final size:22
Alignment explanation
Indices: 45944674--45944718 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
45944664 AAATTAAATC
45944674 TCTAAGATTACAAAATCTTATCT
1 TCTAAGATTAC-AAATCTTATCT
* *
45944697 TCTAAGATTGCATATCTTATCT
1 TCTAAGATTACAAATCTTATCT
45944719 AAGATTGCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.33, C:0.18, G:0.07, T:0.42
Consensus pattern (22 bp):
TCTAAGATTACAAATCTTATCT
Found at i:45944721 original size:19 final size:19
Alignment explanation
Indices: 45944697--45944750 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
45944687 AATCTTATCT
*
45944697 TCTAAGATTGCATATCTTA
1 TCTAAGATTGCATATCATA
45944716 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
45944735 TCTAAGATTACATATC
1 TCTAAGATTGCATATC
45944751 CTTTTTCAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45945084 original size:44 final size:45
Alignment explanation
Indices: 45945027--45945120 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 45
45945017 GGCTTACGTC
*
45945027 CTTCAACCTACTCCACTGCAACTTCAGGAAGATAAGATT-GATAT
1 CTTCAACCGACTCCACTGCAACTTCAGGAAGATAAGATTGGATAT
* * *
45945071 CTTCAACCGACTCCACTGTAACTTCAGGAAGATAAGGTTGGTTAT
1 CTTCAACCGACTCCACTGCAACTTCAGGAAGATAAGATTGGATAT
45945116 CTTCA
1 CTTCA
45945121 GTCTTGATCT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 36 0.80
45 9 0.20
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (45 bp):
CTTCAACCGACTCCACTGCAACTTCAGGAAGATAAGATTGGATAT
Found at i:45945415 original size:132 final size:132
Alignment explanation
Indices: 45945202--45945476 Score: 406
Period size: 132 Copynumber: 2.1 Consensus size: 132
45945192 AACGCCAAGG
* * * * *
45945202 AGATAAGATTCGCTGCCTTCGATCTGCTCCACTACTACTTAGGGATACATGATCTACAATCTTCG
1 AGATAAGATTTGCTGCCTTCGATCTACTCCACTACTACTTAGGGAGACAAGATCTACAATCTTCA
* * * * *
45945267 ACCTACTCCACTGCTGCTAAGGGAGAGGGGATTAGTGGCTTAAATCTGCTTCCCTACTACCTTAG
66 ACCTACTCCACCGCTGCTAAGGGAGAGAGGACTAGTGGCGTAAATCTACTTCCCTACTACCTTAG
45945332 GA
131 GA
* *
45945334 AGATAGGATTTGCTGCCTTCGATCTACTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCA
1 AGATAAGATTTGCTGCCTTCGATCTACTCCACTACTACTTAGGGAGACAAGATCTACAATCTTCA
* * * *
45945399 ACCTACTCCACCGCTGCTCAGGGAGATAGGACTGGTGGCGTAAATCTACTTCCCTACTACCTTGG
66 ACCTACTCCACCGCTGCTAAGGGAGAGAGGACTAGTGGCGTAAATCTACTTCCCTACTACCTTAG
45945464 GA
131 GA
45945466 AGATAAGATTT
1 AGATAAGATTT
45945477 ACAATCTTCG
Statistics
Matches: 126, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
132 126 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (132 bp):
AGATAAGATTTGCTGCCTTCGATCTACTCCACTACTACTTAGGGAGACAAGATCTACAATCTTCA
ACCTACTCCACCGCTGCTAAGGGAGAGAGGACTAGTGGCGTAAATCTACTTCCCTACTACCTTAG
GA
Found at i:45945529 original size:45 final size:45
Alignment explanation
Indices: 45945480--45948514 Score: 3852
Period size: 45 Copynumber: 68.1 Consensus size: 45
45945470 AAGATTTACA
*
45945480 ATCTTCGATCTGCTTCGCTGCCAATACAGGAAGACAAGAT-T--T
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * * * * *
45945522 -GC-T--A--T-CTTCGCTGCCAGTATAGAAACACAAGATTTACT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45945560 ATCTTCGATCTACTTCGCTGCCAATACAGGAAAACAAGATCGGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
*
45945605 ATCTTCGATCTACTTCGCTGTCAATACAGGAAGACAAGAT-T--T
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45945647 -GC-T--A--TA-TTCGCTGCCAGTACAGGAAGACAAGAT-T--T
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * * *
45945682 -GC-T--A--T-CTTCGCTGCCAGTACAGGACGACAAAATTTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45945720 ATCTTTGATCTACTTCACTGTCAATACAGGAAGACAGGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
*
45945765 ATCTTCGATCTACTTCGCTGCCAGTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * * * *
45945810 ATCTTCAATCTACTTCGCTACTAGTACAGGATGACAAGATCTGCA
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * * * *
45945855 ATCTTCAATC-ACTTCGCTGCTAGTATAGTAAGACAAGATCTACT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45945899 ATCTTCAATCTACTTCGCTGCCAGTACAGGAAGACAATATTTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45945944 ATCTTCAATCTATTTCGCTGCCAACACAGGAAGACAAGATTTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45945989 ATTTTCGATCTACTTCGTTGCCAATACAGGAATACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45946034 ATCTTCAATCTACTTCGCTGCTAGTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45946079 ATGTTCGATCTACTTCGCTGCGAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
45946124 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * * * *
45946169 AACTTCCATCTACTTCACTACCAATACAAGAAGACAAGATATGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45946214 ATCTTCGATCTACTTAGCTGCCAATACAGGAAGACAAGATCTGCC
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45946259 ATCTTCGATTTACTTTGCTGCCAATACAGGAAGATAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45946304 AGCTTCGATATACTTCGCTGTCAATACAGGAATACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45946349 ATCTTCGATCTACTTCGCTGCCAATACCGAAAGACAAGATGTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
45946394 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45946439 ATCTTCGATCTACTTCACTGCCAGTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45946484 ATCTTCGATCTACTTCGCTGCCACTACAGGAAAACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45946529 ATCTTCGATCTACTTCGCTGCCAATATAGAAAGAGAAGATCTACT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* ** * * * *
45946574 AACTTTAATCTACTTCACTGCCACTATAAGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
*
45946619 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAAATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45946664 ATCTTCGATCTACTTCGCTGCCAGTATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45946709 ATTTTCAATCTACTTCGCTACCAATACAGGAAGACAAGATCTGTT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45946754 ATCTTCAATCTACTTCCCTGCCAATACAGGAAGACAAGTTATGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45946799 ATCTTCGATCTACTTCGTTGCCAATACAGGAAAACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45946844 ATCCTCGATCTACTTTGCTGCCAATACAGGAAGACAAGATCTACT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45946889 ATCTTCGATCTACTTTGCTGCCAATACAGGAAGGCAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45946934 ATCTTCGATCTACTTCGCTGCCAGTAGAGGAAGAGAAGATCAGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
** * * * *
45946979 AAGTTCAATCTACTTCGCTGCCACTACAGGAATACAAGATATGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
45947024 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45947069 AACTTCGATCTACTTCGCTGCCAATACAGGAAGAAAAAATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45947114 ATCTTTGATCTACTTCGCTGCCAGTACAAGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45947159 ATCTTCAATCTACTTCGCTGCCAATACAAGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45947204 ATCTTCAATCTACTTCACTGTCAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45947249 ATCTTCGATCTACTTTGCTGCCGATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45947294 ATCTTTGATCTACTTAGCTGCCAATACAGGAAGATAAGAT-TAGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCT-GCT
* ** *
45947339 ATCTTCGATTTACTTCGCTGCCAATACAAAAAGATAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45947384 AGCTTTGATCTACTTTGCTGCCAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45947429 ATCGTCGATCTACTTCGCTGCCAATACAGGAAGACAAAATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
*
45947474 ATCTTCGATCTACTTCGCTGCCAGTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45947519 ATTTTCAATCTACTTCGCTACCAATACAGGAAGACAAGATCTGTT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * * *
45947564 ATCTTCAATCTACTTCCCTGCCAATACAGAAAGACAAGTTATGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45947609 ATCTTCGATCTACTTCGTTGCCAATACAGGAAAACAAGATATGTT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45947654 ATCCTCGATCTACTTTGCTGCCAATACAGGAAGACAAGATCTACT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45947699 ATCTTCGATCTACTTTGCTGCCAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45947744 ATCTTCGATCTACTTCGCTGCCAGTAGAGGAAGAGAAGATCAGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
** * * * * * *
45947789 AAGTTCAATCTACTTCACTGCCACTACTGGAATACAAGATATGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45947834 ATATTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATTTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45947879 AACTTCGATCTACTTCGCTGCCAATACAGGAAGAAAAAATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45947924 ATCTTTGATCTACTTCGCTGCCAGTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45947969 ATCTTCAATCTACTTCGCTGCCAATACAAGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45948014 ATCTTCAATCTACTTCACTGTCAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45948059 ATCTTCGATCTACTTCGCTGCCGATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * *
45948104 ATCTTTGATCTACTTAGCTGCCAATACAGGAAGATAAGAT-TAGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCT-GCT
* ** *
45948149 ATCTTCGATTTACTTCGCTGCCAATACAAAAAGATAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* *
45948194 AGCTTCGATCTACTTTGCTGCCAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45948239 ATCGTCGATCTACTTCGCTTCCAATATAGGAAGACAAGATCTGAT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45948284 ATCTTCGATCTACTTCGCTGCCAGTACAAGAAGACAAAATTTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45948329 ATCTTCGATCTACTTCACTGCCAATATAGGAAGACAATATATGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45948374 AACTTCAATCTACTTCGCTGCCAATATAGGAAGACAAGATCTACT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * *
45948419 CTCTGCGATCTACTTCGCTGCCAATATAGGAAGACAAGATTTGCT
1 ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
* * * * *
45948464 AACTTCAATCTACTGT-GCTGCCAATACAAGAAGACAAAATATGCT
1 ATCTTCGATCTACT-TCGCTGCCAATACAGGAAGACAAGATCTGCT
45948509 ATCTTC
1 ATCTTC
45948515 AACCTACTCC
Statistics
Matches: 2602, Mismatches: 364, Indels: 51
0.86 0.12 0.02
Matches are distributed among these distances:
35 81 0.03
36 5 0.00
38 4 0.00
39 2 0.00
40 4 0.00
41 2 0.00
42 3 0.00
44 42 0.02
45 2456 0.94
46 3 0.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (45 bp):
ATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCT
Found at i:45945552 original size:35 final size:35
Alignment explanation
Indices: 45945492--45945566 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
45945482 CTTCGATCTG
* * *
45945492 CTTCGCTGCCAATACAGGAAGACAAGATTTGCTAT
1 CTTCGCTGCCAATACAGAAACACAAGATTTACTAT
* *
45945527 CTTCGCTGCCAGTATAGAAACACAAGATTTACTAT
1 CTTCGCTGCCAATACAGAAACACAAGATTTACTAT
45945562 CTTCG
1 CTTCG
45945567 ATCTACTTCG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (35 bp):
CTTCGCTGCCAATACAGAAACACAAGATTTACTAT
Found at i:45945722 original size:35 final size:35
Alignment explanation
Indices: 45945617--45945724 Score: 171
Period size: 35 Copynumber: 3.1 Consensus size: 35
45945607 CTTCGATCTA
* *
45945617 CTTCGCTGTCAATACAGGAAGACAAGATTTGCTAT
1 CTTCGCTGCCAGTACAGGAAGACAAGATTTGCTAT
*
45945652 ATTCGCTGCCAGTACAGGAAGACAAGATTTGCTAT
1 CTTCGCTGCCAGTACAGGAAGACAAGATTTGCTAT
* *
45945687 CTTCGCTGCCAGTACAGGACGACAAAATTTGCTAT
1 CTTCGCTGCCAGTACAGGAAGACAAGATTTGCTAT
45945722 CTT
1 CTT
45945725 TGATCTACTT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (35 bp):
CTTCGCTGCCAGTACAGGAAGACAAGATTTGCTAT
Found at i:45950790 original size:11 final size:11
Alignment explanation
Indices: 45950732--45950799 Score: 50
Period size: 11 Copynumber: 6.2 Consensus size: 11
45950722 TCCCTTTTCC
*
45950732 TTTTCTTTTTAT
1 TTTTCATTTT-T
* *
45950744 TTTTCCTTTTC
1 TTTTCATTTTT
45950755 TTTTC-TTTTT
1 TTTTCATTTTT
* *
45950765 CTATCATTTTCT
1 TTTTCATTTT-T
45950777 TTTTCA-TTTT
1 TTTTCATTTTT
*
45950787 TTTTAATTTTT
1 TTTTCATTTTT
45950798 TT
1 TT
45950800 GATTTTTTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 7
0.75 0.13 0.12
Matches are distributed among these distances:
10 13 0.29
11 18 0.40
12 14 0.31
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTCATTTTT
Found at i:45950796 original size:9 final size:9
Alignment explanation
Indices: 45950784--45950816 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
45950774 TCTTTTTCAT
45950784 TTTTTTTAA
1 TTTTTTTAA
*
45950793 TTTTTTTGA
1 TTTTTTTAA
45950802 -TTTTTTAA
1 TTTTTTTAA
45950810 TTTTTTT
1 TTTTTTT
45950817 TGAAACTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:45950796 original size:17 final size:16
Alignment explanation
Indices: 45950785--45950816 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
45950775 CTTTTTCATT
45950785 TTTTTTAATTTTTTTGA
1 TTTTTTAATTTTTTT-A
45950802 TTTTTTAATTTTTTT
1 TTTTTTAATTTTTTT
45950817 TGAAACTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTTTAATTTTTTTA
Found at i:45953406 original size:16 final size:16
Alignment explanation
Indices: 45953381--45953415 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45953371 TTCTATGATG
*
45953381 AAATGCCATGCAGTCA
1 AAATGCCATGCAGCCA
*
45953397 AAATGTCATGCAGCCA
1 AAATGCCATGCAGCCA
45953413 AAA
1 AAA
45953416 CAAAACATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.23, G:0.17, T:0.17
Consensus pattern (16 bp):
AAATGCCATGCAGCCA
Found at i:45955173 original size:24 final size:23
Alignment explanation
Indices: 45955146--45955338 Score: 99
Period size: 23 Copynumber: 8.3 Consensus size: 23
45955136 TGATAAATCC
*
45955146 AAAATAATAGTTTATAATAAATTT
1 AAAATAATA-TTAATAATAAATTT
*
45955170 -AAA-AATATTAATGATAAATTT
1 AAAATAATATTAATAATAAATTT
* *
45955191 GAAATAGATA-TACATGATAAATTT
1 AAAATA-ATATTA-ATAATAAATTT
* * *
45955215 AAAATAATGTTAACAATGAATTT
1 AAAATAATATTAATAATAAATTT
* * *
45955238 AAAATAATAATATTGATAAA-TT
1 AAAATAATATTAATAATAAATTT
** * *
45955260 ACAAATAATAAAACATGATAAATCT
1 A-AAATAATATTA-ATAATAAATTT
* * * *
45955285 AAAATAATAATATACAATACACTT
1 AAAATAATATTA-ATAATAAATTT
* * *
45955309 -AGATAATATTAATGATTAATTT
1 AAAATAATATTAATAATAAATTT
45955331 AATAATAA
1 AA-AATAA
45955339 GTATAAACAT
Statistics
Matches: 128, Mismatches: 31, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
21 12 0.09
22 16 0.12
23 50 0.39
24 48 0.38
25 2 0.02
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (23 bp):
AAAATAATATTAATAATAAATTT
Found at i:45955276 original size:70 final size:69
Alignment explanation
Indices: 45955136--45955293 Score: 185
Period size: 70 Copynumber: 2.3 Consensus size: 69
45955126 TAATCATACG
* * * * **
45955136 TGATAAATCCAAAATAATAGTTTATAATAAATTTAAAAATATTAATGATAAATTTGAAATAGATA
1 TGATAAATCTAAAATAATAGTTAACAATAAATTTAAAAATAATAATGATAAATTACAAATAGATA
*
45955201 TACA
66 AACA
* * *
45955205 TGATAAATTTAAAATAAT-GTTAACAATGAATTTAAAATAATAATATTGATAAATTACAAATA-A
1 TGATAAATCTAAAATAATAGTTAACAATAAATTT-AAA-AATAATAATGATAAATTACAAATAGA
45955268 TAAAACA
64 T-AAACA
45955275 TGATAAATCTAAAATAATA
1 TGATAAATCTAAAATAATA
45955294 ATATACAATA
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
68 12 0.16
69 21 0.28
70 41 0.55
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (69 bp):
TGATAAATCTAAAATAATAGTTAACAATAAATTTAAAAATAATAATGATAAATTACAAATAGATA
AACA
Found at i:45955315 original size:70 final size:68
Alignment explanation
Indices: 45955136--45955329 Score: 167
Period size: 70 Copynumber: 2.8 Consensus size: 68
45955126 TAATCATACG
* * * * * * **
45955136 TGATAAATCCAAAATAATAGTTTATAATAAATTTAAAAATATTAATGATAAATTTGAAATAGATA
1 TGATAAATCTAAAATAATAATATACAAT-AATTTAATAATAATAATGATAAATTACAAATAGATA
*
45955201 TACA
65 AACA
* ** *
45955205 TGATAAATTTAAAATAATGTTA-ACAATGAATTTAAAATAATAATATTGATAAATTACAAATA-A
1 TGATAAATCTAAAATAATAATATACAAT-AATTT--AATAATAATAATGATAAATTACAAATAGA
45955268 TAAAACA
63 T-AAACA
* * *
45955275 TGATAAATCTAAAATAATAATATACAATACACTTAGATAATATTAATGATTAATT
1 TGATAAATCTAAAATAATAATATACAATA-ATTTA-ATAATAATAATGATAAATT
45955330 TAATAATAAG
Statistics
Matches: 99, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
68 9 0.09
69 20 0.20
70 62 0.63
71 8 0.08
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (68 bp):
TGATAAATCTAAAATAATAATATACAATAATTTAATAATAATAATGATAAATTACAAATAGATAA
ACA
Found at i:45956182 original size:19 final size:19
Alignment explanation
Indices: 45956158--45956211 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
45956148 AATCTTATTT
*
45956158 TCTAAGATTGCATATCTTA
1 TCTAAGATTGCATATCATA
*
45956177 TCTAAGATTGCATGTCATA
1 TCTAAGATTGCATATCATA
*
45956196 TCTAATATTGCATATC
1 TCTAAGATTGCATATC
45956212 CTTTTTCAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:45961427 original size:8 final size:8
Alignment explanation
Indices: 45961414--45961438 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
45961404 TCATCTCTTT
45961414 TGGTTAGA
1 TGGTTAGA
45961422 TGGTTAGA
1 TGGTTAGA
45961430 TGGTTAGA
1 TGGTTAGA
45961438 T
1 T
45961439 AATTGTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.36, T:0.40
Consensus pattern (8 bp):
TGGTTAGA
Found at i:45964123 original size:49 final size:49
Alignment explanation
Indices: 45964081--45964193 Score: 163
Period size: 49 Copynumber: 2.3 Consensus size: 49
45964071 TATGTACCTT
* ***
45964081 AGCCATTTTGATAAGTGTGTTAAGTGTTGGAACATATTTTATGTTTCTC
1 AGCCATTTTGATAAGTGCGTTAAGTGCAAGAACATATTTTATGTTTCTC
* * *
45964130 AGCCGTTCTAATAAGTGCGTTAAGTGCAAGAACATATTTTATGTTTCTC
1 AGCCATTTTGATAAGTGCGTTAAGTGCAAGAACATATTTTATGTTTCTC
45964179 AGCCATTTTGATAAG
1 AGCCATTTTGATAAG
45964194 ATAAGTATTT
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 54 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.40
Consensus pattern (49 bp):
AGCCATTTTGATAAGTGCGTTAAGTGCAAGAACATATTTTATGTTTCTC
Found at i:45968979 original size:42 final size:42
Alignment explanation
Indices: 45968920--45969007 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
45968910 TACAAATTAT
*
45968920 CTATCTTTAACTCTAATCACCCCGAATCAAGGGACGTACTTC
1 CTATCTTTAACTCTAATCACCCAGAATCAAGGGACGTACTTC
45968962 CTATCTTTAACTCTAATCACCCAGAATCAAGGGACGTACTTC
1 CTATCTTTAACTCTAATCACCCAGAATCAAGGGACGTACTTC
45969004 CTAT
1 CTAT
45969008 AATCAATGTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.30
Consensus pattern (42 bp):
CTATCTTTAACTCTAATCACCCAGAATCAAGGGACGTACTTC
Found at i:45977330 original size:185 final size:185
Alignment explanation
Indices: 45977018--45977389 Score: 690
Period size: 185 Copynumber: 2.0 Consensus size: 185
45977008 CTTCCTTTTC
* *
45977018 TCCTACATCAACTTCCTCCTCAACAGTAGGCGCCTCTTGACTAGCGATGAAGTCACCCTCGACTA
1 TCCTACATCAACTTCCTCCTCAACAGTAGGCGCCTCTTGACTAGCAATGAAGTCACCCTCAACTA
* *
45977083 GGCTATCAATCCTTCGCATACATTCTTCAATGTCCCTTGAGTCTTATTCTTTCTCATTATCAGAA
66 GGCTATCAATCCTTCGCATACATTCCTCAATGTCCCTTGAGTCCTATTCTTTCTCATTATCAGAA
45977148 ACGTGCATAATGGGAAGGGATTCCACCAATCTGTCTCGGTTCCCTAAGCCATCTT
131 ACGTGCATAATGGGAAGGGATTCCACCAATCTGTCTCGGTTCCCTAAGCCATCTT
45977203 TCCTACATCAACTTCCTCCTCAACAGTAGGCGCCTCTTGACTAGCAATGAAGTCACCCTCAACTA
1 TCCTACATCAACTTCCTCCTCAACAGTAGGCGCCTCTTGACTAGCAATGAAGTCACCCTCAACTA
*
45977268 GGCTATCAATCCTTCGCATACATTCCTCAATGTCCCTTGAGTCCTCTTCTTTCTCATTATCAGAA
66 GGCTATCAATCCTTCGCATACATTCCTCAATGTCCCTTGAGTCCTATTCTTTCTCATTATCAGAA
*
45977333 ACGTGTATAATGGGAAGGGATTCCACCAATCTGTCTCGGTTCCCTAAGCCATCTT
131 ACGTGCATAATGGGAAGGGATTCCACCAATCTGTCTCGGTTCCCTAAGCCATCTT
45977388 TC
1 TC
45977390 TCGAAAGAGG
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
185 181 1.00
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.31
Consensus pattern (185 bp):
TCCTACATCAACTTCCTCCTCAACAGTAGGCGCCTCTTGACTAGCAATGAAGTCACCCTCAACTA
GGCTATCAATCCTTCGCATACATTCCTCAATGTCCCTTGAGTCCTATTCTTTCTCATTATCAGAA
ACGTGCATAATGGGAAGGGATTCCACCAATCTGTCTCGGTTCCCTAAGCCATCTT
Done.