Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 152 of 211
Found at i:47867349 original size:6 final size:5
Alignment explanation
Indices: 47867296--47867358 Score: 56
Period size: 6 Copynumber: 11.6 Consensus size: 5
47867286 ATGAAGATCA
*
47867296 TTTAT TTTAT TTGTCT TTT-T TTTAGT TTTAGT TTTAGT TTTATT TTTAT
1 TTTAT TTTAT TT-TAT TTTAT TTTA-T TTTA-T TTTA-T TTTA-T TTTAT
47867345 GTTTAT TTTAT TTT
1 -TTTAT TTTAT TTT
47867359 CTTAGACTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
4 4 0.08
5 17 0.33
6 31 0.60
ACGTcount: A:0.14, C:0.02, G:0.08, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:47870350 original size:44 final size:44
Alignment explanation
Indices: 47870299--47870385 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
47870289 TTAAAAATAA
* *
47870299 TTTTT-AAAATTAGAAATATTTATAGAAATTCTAAAATT-TATATT
1 TTTTTAAAAATTAGAAAT-TTT-TAAAAAATCTAAAATTATATATT
*
47870343 TTTTTAAAAAATTATAAATTTTTAAAAAATCTAAAATTATATA
1 TTTTT-AAAAATTAGAAATTTTTAAAAAATCTAAAATTATATA
47870386 AAAAATTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
44 19 0.51
45 7 0.19
46 11 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (44 bp):
TTTTTAAAAATTAGAAATTTTTAAAAAATCTAAAATTATATATT
Found at i:47870355 original size:19 final size:19
Alignment explanation
Indices: 47870331--47870399 Score: 70
Period size: 18 Copynumber: 3.6 Consensus size: 19
47870321 TAGAAATTCT
**
47870331 AAAATTTATATTTTTTTAA
1 AAAATTTATAAATTTTTAA
47870350 AAAA-TTATAAATTTTTAA
1 AAAATTTATAAATTTTTAA
* *
47870368 AAAATCTA-AAATTATATAA
1 AAAATTTATAAATT-TTTAA
47870387 AAAATTTAATAAA
1 AAAATTT-ATAAA
47870400 ATAATAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
18 21 0.51
19 16 0.39
20 1 0.02
21 3 0.07
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTTATAAATTTTTAA
Found at i:47873575 original size:21 final size:20
Alignment explanation
Indices: 47873541--47873596 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
47873531 CCTTTTTTAT
47873541 ATTTTTTA-AATTTTAAATA
1 ATTTTTTAGAATTTTAAATA
*
47873560 ATTTTTTAGAATTTTTACAT-
1 ATTTTTTAGAA-TTTTAAATA
*
47873580 ACTTTTT-GAATTTTAAA
1 ATTTTTTAGAATTTTAAA
47873597 AAATGATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
18 6 0.19
19 11 0.34
20 8 0.25
21 7 0.22
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
ATTTTTTAGAATTTTAAATA
Found at i:47873640 original size:10 final size:10
Alignment explanation
Indices: 47873626--47873682 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
47873616 ATGTTTTTTC
*
47873626 ATTTTCATA-
1 ATTTTTATAT
47873635 ATTTTTATAT
1 ATTTTTATAT
47873645 ATTTTTATAT
1 ATTTTTATAT
* *
47873655 ATTTATAATTT
1 ATTT-TTATAT
*
47873666 GTTTTTATAT
1 ATTTTTATAT
*
47873676 GTTTTTA
1 ATTTTTA
47873683 CATTTTTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
9 8 0.20
10 25 0.62
11 7 0.17
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:47873782 original size:19 final size:19
Alignment explanation
Indices: 47873738--47873784 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
47873728 ATATATATTT
*
47873738 ATGATTTTTACATTTTTAAA
1 ATGATTTTTACAATTTT-AA
47873758 AT-ATTTTCTACAATTTT-A
1 ATGATTTT-TACAATTTTAA
47873776 ATGATTTTT
1 ATGATTTTT
47873785 TTGGTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 4 0.17
19 10 0.42
20 10 0.42
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.57
Consensus pattern (19 bp):
ATGATTTTTACAATTTTAA
Found at i:47875622 original size:3 final size:3
Alignment explanation
Indices: 47875614--47875679 Score: 96
Period size: 3 Copynumber: 21.7 Consensus size: 3
47875604 TATTTTAGTG
* *
47875614 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
47875662 CTA TTA TTAA TTA TTA TT
1 TTA TTA TT-A TTA TTA TT
47875680 GGCTTTATTT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
3 55 0.95
4 3 0.05
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:47888635 original size:96 final size:96
Alignment explanation
Indices: 47888467--47889921 Score: 1886
Period size: 96 Copynumber: 15.0 Consensus size: 96
47888457 GTAACCATAG
* *
47888467 ATTGCAATTAAAAAGATCGAAGCCACAACGGTGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
*
47888532 TTGAAGCTACAACGGCGAGTCTCATTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
* *
47888563 ATTACAATTTAAAAGATCGAAGCCACAACAGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
47888628 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
* *
47888659 ATTGCAATTTAAAAAATCGAAGCCACAACGGCAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
*
47888724 TTGAAGCTACAACGGCGAGTCTCACTTCCCT
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
47888755 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
47888820 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
*
47888851 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAATAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
47888916 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
* * * *
47888947 ATTGCAATTTAAAAGTTTGAAGCCACAACGGTGAATCTTACTTTCAGGCGATGCAGTGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
47889012 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
** *
47889043 ATTGCAATTTAAAAGATCGAAGCCACAACGGTAAATCTTACTTTCAGGCGATGCAGCGAAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
*
47889108 TTGAAGCTACAACGGTGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
**
47889139 ATTGCAATTTAAAAGATCGAAGCCACAACGGTAAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
47889204 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
47889235 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
* * *
47889300 TTGAAGCTACAATGGCAAGTCTCACTTTCCC
66 TTGAAGCTACAACGGCGAGTCTCACTTCCCC
* *
47889331 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAACGGAACAGA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
*
47889396 TTGAAGCTACAACAGCGAGTCTCACTTCCCCAAC
66 TTGAAGCTACAACGGCGAGTCTCACTT-CCC--C
* * * * * * * * *
47889430 ATTGC-AGTCAAATAGATTGAAGCTACAACAGCGAGTCTCAC-ATCATTGGCGATGCAACGGAAC
1 ATTGCAATTTAAA-AGATCGAAGCCACAACGGCGAATCTTACTTTCA--GGCGATGCAGCGGAAC
* * * *
47889493 AGATTGAAGCTACAACAGCAAATCTTACTTCCCTAAC
63 AGATTGAAGCTACAACGGCGAGTCTCACTTCCC---C
* * * * * * *
47889530 ATTGCAA-TTAAAAGATTGAGGCCACGATGGCGGATCTTACTTACTTA-GCGATGCAGCGAAACA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTT--TCAGGCGATGCAGCGGAACA
* *
47889593 GATTGAAGCTACAACGGTGAATCTCACTTCCCCGAC
64 GATTGAAGCTACAACGGCGAGTCTCACTT-CCC--C
* * * * * * * *
47889629 ATTGCAATTTAAAAGATTGAGGCCACGACGGCGGATCTTACTTCCAAGCGAT-CTAGAGGAATAG
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGC-AGCGGAACAG
* *
47889693 ATTGAAGCTACAATGGCG-GATCTCACTCCCTCGAC
65 ATTGAAGCTACAACGGCGAG-TCTCACTTCC-C--C
* * * * * * *
47889728 ATTGCAATTTAAAAGATTGAGGCCACGACGGC-AGATCTTACTTCCAAGCAATGCAGCGTAACAG
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGA-ATCTTACTTTCAGGCGATGCAGCGGAACAG
** *
47889792 ATTGAAGCTACAATAGCGAATCTCAC-TCCGCTGAC
65 ATTGAAGCTACAACGGCGAGTCTCACTTCC-C---C
* * * * * * * * **
47889827 ATTGCAA-TTAAAAGATTGAGGCCACAATGGCAAATCTTA-TTCCTAAGCAGGTACAATGGAACA
1 ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTC-AGGC-GATGCAGCGGAACA
* * *
47889890 GATTGAAGCTACAATGGCGAATCTCGCTTCCC
64 GATTGAAGCTACAACGGCGAGTCTCACTTCCC
47889922 TGACATTTTA
Statistics
Matches: 1237, Mismatches: 97, Indels: 47
0.90 0.07 0.03
Matches are distributed among these distances:
96 823 0.67
97 6 0.00
98 46 0.04
99 263 0.21
100 96 0.08
101 1 0.00
102 2 0.00
ACGTcount: A:0.33, C:0.24, G:0.21, T:0.22
Consensus pattern (96 bp):
ATTGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
TTGAAGCTACAACGGCGAGTCTCACTTCCCC
Found at i:47889536 original size:50 final size:50
Alignment explanation
Indices: 47889190--47889536 Score: 182
Period size: 50 Copynumber: 7.1 Consensus size: 50
47889180 TTTCAGGCGA
* *
47889190 TGCAGCGGAACAGATTGAAGCTACAACGGCGAGTCTCACTTCCC---CAT
1 TGCAACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCTAACAT
*** * * * * * * * *
47889237 TGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTT-TC-AGGCGA-
1 TGCAACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCTA-AC-AT
* ** * *
47889286 TGCAGCGGAACAGATTGAAGCTACAATGGCAAGTCTCACTTTCC---CAT
1 TGCAACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCTAACAT
*** * * * * * * *
47889333 TGCAATTTAAAAGATCGAAGCCACAACGGCGAATCTTACTT-CC-AGGCGA-
1 TGCAACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCTA-AC-AT
*
47889382 TGCAACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCCAACAT
1 TGCAACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCTAACAT
* * * * ** **
47889432 TGCAGTC-AAATAGATTGAAGCTACAACAGCGAGTCTCACATCATTGGCGA-
1 TGCA-ACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCTAAC-AT
* * *
47889482 TGCAACGGAACAGATTGAAGCTACAACAGCAAATCTTACTTCCCTAACAT
1 TGCAACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCTAACAT
47889532 TGCAA
1 TGCAA
47889537 TTAAAAGATT
Statistics
Matches: 220, Mismatches: 63, Indels: 31
0.70 0.20 0.10
Matches are distributed among these distances:
46 4 0.02
47 63 0.29
49 67 0.30
50 83 0.38
51 3 0.01
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (50 bp):
TGCAACGGAACAGATTGAAGCTACAACAGCGAGTCTCACTTCCCTAACAT
Found at i:47889863 original size:49 final size:48
Alignment explanation
Indices: 47889691--47889863 Score: 132
Period size: 49 Copynumber: 3.5 Consensus size: 48
47889681 CTAGAGGAAT
* **
47889691 AGATTGAAGCTACAATGGCGGATCTCACTCCCTCGACATTGCAATTTAAA
1 AGATTGAAGCCACAATGGCAAATCTCACTCCCT-GACATTGCAA-TTAAA
* * * * * * * * ** *
47889741 AGATTGAGGCCACGACGGCAGATCTTACTTCC-AAGCAATGCAGCGTAAC
1 AGATTGAAGCCACAATGGCAAATCTCACTCCCTGA-CATTGCA-ATTAAA
* * *
47889790 AGATTGAAGCTACAATAGCGAATCTCACTCCGCTGACATTGCAATTAAA
1 AGATTGAAGCCACAATGGCAAATCTCACTCC-CTGACATTGCAATTAAA
*
47889839 AGATTGAGGCCACAATGGCAAATCT
1 AGATTGAAGCCACAATGGCAAATCT
47889864 TATTCCTAAG
Statistics
Matches: 89, Mismatches: 30, Indels: 9
0.70 0.23 0.07
Matches are distributed among these distances:
48 1 0.01
49 55 0.62
50 32 0.36
51 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.23
Consensus pattern (48 bp):
AGATTGAAGCCACAATGGCAAATCTCACTCCCTGACATTGCAATTAAA
Found at i:47891340 original size:3 final size:3
Alignment explanation
Indices: 47891332--47891379 Score: 60
Period size: 3 Copynumber: 15.7 Consensus size: 3
47891322 TATTTTAGTG
* * *
47891332 TTA TTA TTA TTA TTA TTA TTA TCA TTA CTA CTA TTA TTAA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA
47891378 TT
1 TT
47891380 GGCTTTATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:47899133 original size:18 final size:18
Alignment explanation
Indices: 47899110--47899146 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
47899100 ATGTTGAGTT
*
47899110 AAAATTATAAGTATATAA
1 AAAATTAAAAGTATATAA
47899128 AAAATTAAAAGTATATAA
1 AAAATTAAAAGTATATAA
47899146 A
1 A
47899147 TCGAATGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
AAAATTAAAAGTATATAA
Found at i:47900006 original size:41 final size:41
Alignment explanation
Indices: 47899949--47900057 Score: 182
Period size: 41 Copynumber: 2.6 Consensus size: 41
47899939 GACTATACGT
**
47899949 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGACTATAAAC
*
47899990 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGACTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGACTATAAAC
47900031 CTAGCAGGCTAAGTGCCGGTGAATCTG
1 CTAGCAGGCTAAGTGCCGGTG-ATCTG
47900058 TTAAATTAAG
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
41 59 0.92
42 5 0.08
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGACTATAAAC
Found at i:47914985 original size:33 final size:33
Alignment explanation
Indices: 47914948--47915014 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
47914938 AATTTGAAAG
47914948 TTCTCTCTCGAAAATTACCTTGAAAATAACGTC
1 TTCTCTCTCGAAAATTACCTTGAAAATAACGTC
*
47914981 TTCTCTCTCGAAAATTACCTTGAAAGTAACGTC
1 TTCTCTCTCGAAAATTACCTTGAAAATAACGTC
47915014 T
1 T
47915015 CAGTTTTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.34
Consensus pattern (33 bp):
TTCTCTCTCGAAAATTACCTTGAAAATAACGTC
Found at i:47915839 original size:26 final size:25
Alignment explanation
Indices: 47915813--47915863 Score: 66
Period size: 28 Copynumber: 1.9 Consensus size: 25
47915803 TTAGCGTTTT
*
47915813 ATTTTTTTAAATTAGAGTTAAAATTTAA
1 ATTTTTTT-AATTAGA-ATAAAATTT-A
47915841 ATTTTTTTAATTAGAATAAAATT
1 ATTTTTTTAATTAGAATAAAATT
47915864 CAGAGACAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.32
27 7 0.32
28 8 0.36
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (25 bp):
ATTTTTTTAATTAGAATAAAATTTA
Found at i:47918658 original size:80 final size:79
Alignment explanation
Indices: 47918557--47918713 Score: 278
Period size: 80 Copynumber: 2.0 Consensus size: 79
47918547 ACAGGTTTGC
*
47918557 ACTTTGTTGCTCGCACCAGGCTGAGCTTGCACCTTTGACAGGCTCACATTTTTTGCTTACTGTCT
1 ACTTTGCTGCTCGCACCAGGCTGAGCTTGCACCTTTGACAGGCTCACA-TTTTTGCTTACTGTCT
47918622 CTTAAGGTGTCTTCA
65 CTTAAGGTGTCTTCA
* *
47918637 ACTTTGCTGCTCGCACTAGGCTGAGCTTGCACCTTTGACAGGCTCGCATTTTTGCTTACTGTCTC
1 ACTTTGCTGCTCGCACCAGGCTGAGCTTGCACCTTTGACAGGCTCACATTTTTGCTTACTGTCTC
47918702 TTAAGGTGTCTT
66 TTAAGGTGTCTT
47918714 GGCTCGCAAC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 29 0.39
80 45 0.61
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.38
Consensus pattern (79 bp):
ACTTTGCTGCTCGCACCAGGCTGAGCTTGCACCTTTGACAGGCTCACATTTTTGCTTACTGTCTC
TTAAGGTGTCTTCA
Found at i:47918835 original size:26 final size:25
Alignment explanation
Indices: 47918756--47918839 Score: 98
Period size: 25 Copynumber: 3.3 Consensus size: 25
47918746 ATGAGCTCAT
* *
47918756 AGCTTGCACTTCTCGCTAAGCTTGC
1 AGCTTGCACATCTTGCTAAGCTTGC
47918781 AGCTTTG-ACATCTTGCTAAGCTTGC
1 AGC-TTGCACATCTTGCTAAGCTTGC
* * *
47918806 AGCTTGCACATTTTTGTTGAGCTTGC
1 AGCTTGCACA-TCTTGCTAAGCTTGC
47918832 AGCTTGCA
1 AGCTTGCA
47918840 TATTGGAAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.06
25 25 0.49
26 23 0.45
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (25 bp):
AGCTTGCACATCTTGCTAAGCTTGC
Found at i:47921788 original size:16 final size:15
Alignment explanation
Indices: 47921749--47921781 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
47921739 AATAAATACC
47921749 AAAAATTTATTTTAA
1 AAAAATTTATTTTAA
47921764 AAAAATTTATTTTAA
1 AAAAATTTATTTTAA
47921779 AAA
1 AAA
47921782 TTTTTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AAAAATTTATTTTAA
Found at i:47921800 original size:9 final size:9
Alignment explanation
Indices: 47921788--47921847 Score: 57
Period size: 9 Copynumber: 6.4 Consensus size: 9
47921778 AAAATTTTTT
47921788 AAAATTAAA
1 AAAATTAAA
47921797 AAAATTAAA
1 AAAATTAAA
*
47921806 AATATTTTAAA
1 AA-A-ATTAAA
* **
47921817 AATATTTTA
1 AAAATTAAA
*
47921826 AAATTTAAA
1 AAAATTAAA
47921835 AAAATTAAA
1 AAAATTAAA
47921844 AAAA
1 AAAA
47921848 AAAGTATTTT
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
9 31 0.79
10 1 0.03
11 7 0.18
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATTAAA
Found at i:47921818 original size:37 final size:38
Alignment explanation
Indices: 47921771--47921845 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 38
47921761 TAAAAAAATT
*
47921771 TATTTTAAAAATTTTTTAAAA-TTAAAAAAATTAAAAA
1 TATTTTAAAAATATTTTAAAATTTAAAAAAATTAAAAA
47921808 TATTTTAAAAATATTTTAAAATTTAAAAAAATTAAAAA
1 TATTTTAAAAATATTTTAAAATTTAAAAAAATTAAAAA
47921846 AAAAAGTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 20 0.56
38 16 0.44
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (38 bp):
TATTTTAAAAATATTTTAAAATTTAAAAAAATTAAAAA
Found at i:47921829 original size:10 final size:11
Alignment explanation
Indices: 47921801--47921828 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
47921791 ATTAAAAAAA
47921801 TTAAAAATATT
1 TTAAAAATATT
47921812 TTAAAAATATT
1 TTAAAAATATT
47921823 TTAAAA
1 TTAAAA
47921829 TTTAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
TTAAAAATATT
Found at i:47921856 original size:44 final size:43
Alignment explanation
Indices: 47921788--47921885 Score: 128
Period size: 44 Copynumber: 2.2 Consensus size: 43
47921778 AAAATTTTTT
47921788 AAAATTAAAAAAATTAAAAATATTTTAAAAATATTTTAAAATTTAAA
1 AAAATT-AAAAAA-TAAAAATATTTTAAAAATATTTTAAAA--TAAA
* *
47921835 AAAATTAAAAAA-AAAAGTATTTTAAAAGTATTTTAAAATAAA
1 AAAATTAAAAAATAAAAATATTTTAAAAATATTTTAAAATAAA
47921877 AAAA-TAAAA
1 AAAATTAAAA
47921886 TATTTATTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
41 5 0.10
42 8 0.16
44 24 0.49
46 6 0.12
47 6 0.12
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (43 bp):
AAAATTAAAAAATAAAAATATTTTAAAAATATTTTAAAATAAA
Found at i:47921861 original size:11 final size:11
Alignment explanation
Indices: 47921847--47921872 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
47921837 AATTAAAAAA
47921847 AAAAGTATTTT
1 AAAAGTATTTT
47921858 AAAAGTATTTT
1 AAAAGTATTTT
47921869 AAAA
1 AAAA
47921873 TAAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (11 bp):
AAAAGTATTTT
Found at i:47950399 original size:30 final size:31
Alignment explanation
Indices: 47950343--47950424 Score: 105
Period size: 31 Copynumber: 2.7 Consensus size: 31
47950333 AATCTCAAAA
* * *
47950343 TTACACATGAAA-TTTGGTTTCATGTGCAATT
1 TTACACATAAAATTTTGATTT-TTGTGCAATT
47950374 TTACACA-AAAATTTTGATTTTTGTGCAATT
1 TTACACATAAAATTTTGATTTTTGTGCAATT
*
47950404 TTATACATAAAATTTTGATTT
1 TTACACATAAAATTTTGATTT
47950425 GATTTAATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
30 18 0.40
31 27 0.60
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (31 bp):
TTACACATAAAATTTTGATTTTTGTGCAATT
Found at i:47955348 original size:25 final size:24
Alignment explanation
Indices: 47955306--47955352 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
47955296 TTTTATATTA
* *
47955306 ATATTAGTACTAATTAAATATAATT
1 ATATTAATACTAAATAAA-ATAATT
*
47955331 ATATTAATATTAAATAAAATAA
1 ATATTAATACTAAATAAAATAA
47955353 AAATCCCCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
ATATTAATACTAAATAAAATAATT
Found at i:47957707 original size:14 final size:15
Alignment explanation
Indices: 47957688--47957720 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
47957678 ATAATTTTTA
47957688 ATTTTTTTA-AAAAT
1 ATTTTTTTATAAAAT
47957702 ATTTTTTTATAAAAT
1 ATTTTTTTATAAAAT
47957717 -TTTT
1 ATTTT
47957721 GAATCTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
ATTTTTTTATAAAAT
Found at i:47973374 original size:20 final size:20
Alignment explanation
Indices: 47973349--47973386 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47973339 AACTATCATG
*
47973349 TTTTCTTCATTTTTTTAACC
1 TTTTCTTCATTTTATTAACC
*
47973369 TTTTCTTTATTTTATTAA
1 TTTTCTTCATTTTATTAA
47973387 TAAAATAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTCTTCATTTTATTAACC
Found at i:47976622 original size:14 final size:14
Alignment explanation
Indices: 47976577--47976624 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
47976567 TTTAAGCAAC
*
47976577 TTAAAATAAATATAT
1 TTAAATTAAATAT-T
*
47976592 TATAAATTATATA-T
1 T-TAAATTAAATATT
47976606 TTAAATTAAATATT
1 TTAAATTAAATATT
47976620 TTAAA
1 TTAAA
47976625 ATAATGAACA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 10 0.36
14 8 0.29
15 1 0.04
16 9 0.32
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
TTAAATTAAATATT
Found at i:47977073 original size:10 final size:10
Alignment explanation
Indices: 47977054--47977103 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
47977044 TTAGAAAAAT
*
47977054 ATTTTTTAAA
1 ATTTTATAAA
47977064 ATTTTATAAA
1 ATTTTATAAA
47977074 ATTTTA-AAA
1 ATTTTATAAA
**
47977083 ACATTATAAA
1 ATTTTATAAA
47977093 CA-TTTATAAA
1 -ATTTTATAAA
47977103 A
1 A
47977104 GTATCAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
9 8 0.24
10 25 0.74
11 1 0.03
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (10 bp):
ATTTTATAAA
Found at i:47977078 original size:19 final size:20
Alignment explanation
Indices: 47977056--47977103 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
47977046 AGAAAAATAT
**
47977056 TTTTTAAAATTTTATAAA-A
1 TTTTTAAAACATTATAAACA
*
47977075 TTTTAAAAACATTATAAACA
1 TTTTTAAAACATTATAAACA
*
47977095 TTTATAAAA
1 TTTTTAAAA
47977104 GTATCAAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (20 bp):
TTTTTAAAACATTATAAACA
Found at i:47977142 original size:19 final size:20
Alignment explanation
Indices: 47977107--47977145 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
47977097 TATAAAAGTA
*
47977107 TCAAATAAAATTCAAAAATT
1 TCAAAAAAAATTCAAAAATT
47977127 TCAAAAAAAATT-AAAAATT
1 TCAAAAAAAATTCAAAAATT
47977146 AATAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (20 bp):
TCAAAAAAAATTCAAAAATT
Found at i:47978404 original size:33 final size:34
Alignment explanation
Indices: 47978362--47978472 Score: 93
Period size: 32 Copynumber: 3.3 Consensus size: 34
47978352 CTAGGTTTAG
* *
47978362 TTTTATCCCCAAATCAATTTCCCAAAATTCCTTA
1 TTTTTTCCCCAAATCAATTTCCCAAAATCCCTTA
*
47978396 -TTTTTCCCCTAAA--AATTTCCCCAAATCCCTTA
1 TTTTTTCCCC-AAATCAATTTCCCAAAATCCCTTA
* ** **
47978428 TTATTTTCCTCAAATCAAAATCCCCTAATCCCTTA
1 TT-TTTTCCCCAAATCAATTTCCCAAAATCCCTTA
**
47978463 GATTTTCCCC
1 TTTTTTCCCC
47978473 GACCTTCTGC
Statistics
Matches: 62, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
32 17 0.27
33 12 0.19
34 17 0.27
35 16 0.26
ACGTcount: A:0.29, C:0.32, G:0.01, T:0.38
Consensus pattern (34 bp):
TTTTTTCCCCAAATCAATTTCCCAAAATCCCTTA
Found at i:47979558 original size:21 final size:18
Alignment explanation
Indices: 47979534--47979579 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
47979524 TAAATTGAGA
47979534 AAATTATTTAATTGGGAAATT
1 AAATTATTT-ATT--GAAATT
*
47979555 AAATTATTTATTTAAATT
1 AAATTATTTATTGAAATT
47979573 AAATTAT
1 AAATTAT
47979580 GATGCTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 12 0.50
20 3 0.12
21 9 0.38
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.48
Consensus pattern (18 bp):
AAATTATTTATTGAAATT
Found at i:47985656 original size:18 final size:18
Alignment explanation
Indices: 47985630--47985672 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
47985620 TCATTGCAAT
*
47985630 ATATGTAAAAATA-ATTTA
1 ATATATAAAAATATA-TTA
*
47985648 ATATATAAAAATTTATTA
1 ATATATAAAAATATATTA
47985666 ATATATA
1 ATATATA
47985673 TTAATATATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (18 bp):
ATATATAAAAATATATTA
Found at i:47985803 original size:20 final size:20
Alignment explanation
Indices: 47985778--47985816 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
47985768 AATATTTTTC
*
47985778 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
47985798 AGTAAAACATTTTACAGAA
1 AGTAAAACATTTTACAGAA
47985817 GTCATTTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:47989337 original size:19 final size:19
Alignment explanation
Indices: 47989313--47989369 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 19
47989303 TCTAATTAAG
47989313 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
* * *
47989332 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTAATT
47989350 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTAATT
47989369 T
1 T
47989370 TGAAAAAATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (19 bp):
TAATAACTCTATTTTAATT
Found at i:47989687 original size:18 final size:19
Alignment explanation
Indices: 47989626--47989682 Score: 80
Period size: 19 Copynumber: 3.1 Consensus size: 19
47989616 AATTTTTTTA
47989626 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
* * *
47989645 AAATGAGAATAG-TTTATT
1 AAATTAAAATAGAGTTATT
47989663 AAATTAAAATAGAGTTATT
1 AAATTAAAATAGAGTTATT
47989682 A
1 A
47989683 CTTAATTAGA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
18 15 0.48
19 16 0.52
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (19 bp):
AAATTAAAATAGAGTTATT
Found at i:47990268 original size:27 final size:27
Alignment explanation
Indices: 47990238--47990296 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
47990228 TTTTAGTCCT
*
47990238 TTGGCAGCATTGGTGCCGCCAATCTCA
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * * *
47990265 TTGGCACCTTTGGTGCCTCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
47990292 TTGGC
1 TTGGC
47990297 CTGATCAGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.27, G:0.27, T:0.31
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:47990367 original size:25 final size:27
Alignment explanation
Indices: 47990339--47990400 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 27
47990329 TTTTTTTGGT
*
47990339 ATATTTTGGT-AA-AAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
47990364 ATATTTTGGTAAATAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAGTTATA
47990391 ATATTTTGGT
1 ATATTTTGGT
47990401 TATTTTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
25 10 0.29
26 2 0.06
27 22 0.65
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAAGTTATA
Found at i:47991500 original size:43 final size:43
Alignment explanation
Indices: 47991429--47991512 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
47991419 TCGAGGTCTG
*
47991429 AAAATGAAATCTAGATCCTTTATTAATTTAATAAAATGATTTC
1 AAAATGAAATCTAGATCCTTTAATAATTTAATAAAATGATTTC
* *
47991472 AAAATTGAAATCTAGATGC-TTAATAATTTAATACAATGATT
1 AAAA-TGAAATCTAGATCCTTTAATAATTTAATAAAATGATT
47991513 CGTGTGTCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 24 0.65
44 13 0.35
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.38
Consensus pattern (43 bp):
AAAATGAAATCTAGATCCTTTAATAATTTAATAAAATGATTTC
Found at i:47997732 original size:31 final size:32
Alignment explanation
Indices: 47997695--47997781 Score: 99
Period size: 31 Copynumber: 2.7 Consensus size: 32
47997685 TGATCATTTT
47997695 TTTAGATTTTATTTTATATATTTA-GAATGTA
1 TTTAGATTTTATTTTATATATTTACGAATGTA
* *
47997726 TTTAGATTTTATATTTA-ATTATTTTACGTATGTT
1 TTTAGATTTTAT-TTTATA-TA-TTTACGAATGTA
*
47997760 TTTAGATTAT-TTTTATATATTT
1 TTTAGATTTTATTTTATATATTT
47997782 TTATAATTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
31 16 0.33
32 12 0.25
33 6 0.12
34 14 0.29
ACGTcount: A:0.29, C:0.01, G:0.08, T:0.62
Consensus pattern (32 bp):
TTTAGATTTTATTTTATATATTTACGAATGTA
Found at i:47997865 original size:20 final size:20
Alignment explanation
Indices: 47997821--47997865 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
47997811 TAGATGTTTT
*
47997821 TTTATATTTTTTTCTGAATTT
1 TTTATATTTTTTTCT-AATTC
47997842 TTTATATTTTATTTCT-ATTC
1 TTTATATTTT-TTTCTAATTC
47997862 TTTA
1 TTTA
47997866 AGACTTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 10 0.45
22 5 0.23
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.71
Consensus pattern (20 bp):
TTTATATTTTTTTCTAATTC
Found at i:47998559 original size:63 final size:63
Alignment explanation
Indices: 47998460--47998585 Score: 207
Period size: 63 Copynumber: 2.0 Consensus size: 63
47998450 AATCTGAACT
* *
47998460 CTTCCTCATTCTTTCTACGATACCCTAGGTAAAGAAATGGTTAAGTGGTATCCTAAGTGCTAA
1 CTTCCTCATCCTTTCTACGATACCCTAGGTAAAGAAATGGTTAAGTGGTATCCTAAATGCTAA
* * *
47998523 CTTCCTCGTCCTTTCTATGATACCCTAGGTAAAGAAATGGTTCAGTGGTATCCTAAATGCTAA
1 CTTCCTCATCCTTTCTACGATACCCTAGGTAAAGAAATGGTTAAGTGGTATCCTAAATGCTAA
47998586 AAGGGTCAAC
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (63 bp):
CTTCCTCATCCTTTCTACGATACCCTAGGTAAAGAAATGGTTAAGTGGTATCCTAAATGCTAA
Found at i:48000315 original size:17 final size:17
Alignment explanation
Indices: 48000274--48000321 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 17
48000264 AATATGCACC
48000274 AATTAAATAATGTGTCAATT
1 AATT-AATAAT-T-TCAATT
48000294 AATT-ATAATTTCAATCT
1 AATTAATAATTTCAAT-T
48000311 AATTAATAATT
1 AATTAATAATT
48000322 AATTCTTTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.19
17 6 0.23
18 11 0.42
20 4 0.15
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (17 bp):
AATTAATAATTTCAATT
Found at i:48005965 original size:46 final size:46
Alignment explanation
Indices: 48005915--48006007 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
48005905 AAATTTTTAC
* * *
48005915 GGAGTTATATTATTGGTGAATTGAATTTTTTATAGACAATTTGGTT
1 GGAGTTATATTATAGGTGAATTAAAATTTTTATAGACAATTTGGTT
48005961 GGAGTTATATTATAGGTGAATTAAAATTTTTATAGACAATTTGGTT
1 GGAGTTATATTATAGGTGAATTAAAATTTTTATAGACAATTTGGTT
48006007 G
1 G
48006008 AATTAAAGTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.45
Consensus pattern (46 bp):
GGAGTTATATTATAGGTGAATTAAAATTTTTATAGACAATTTGGTT
Found at i:48022079 original size:17 final size:18
Alignment explanation
Indices: 48022042--48022079 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
48022032 GATTGAGAGT
* *
48022042 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
48022060 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
48022077 GAA
1 GAA
48022080 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:48022092 original size:13 final size:12
Alignment explanation
Indices: 48022061--48022115 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
48022051 TGTGAAACAG
*
48022061 AAAAGAAATTGA
1 AAAAGAAGTTGA
48022073 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
48022085 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
48022097 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
48022109 AAAAGAA
1 AAAAGAA
48022116 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:48036053 original size:69 final size:69
Alignment explanation
Indices: 48035954--48036167 Score: 259
Period size: 69 Copynumber: 3.1 Consensus size: 69
48035944 ATTAATTGTC
* * * * * * * *
48035954 TTGGAGGTTGCGGCTCTTCGTCTACGAACCTTAATTTTATAGTTAGAAGCTTTGCTCTCGCTAAC
1 TTGGAGGTTGCGACTCTTCGCCTGCGAACCTTAATATTACAGCTGGGAGCTTTGCTCTCGCTAAC
*
48036019 TATT
66 TGTT
*
48036023 TTGGAGGTTGCGACTCTTCGCCTGCCAACCTTAATATTACAGCTGGGAGCTTTGCTCTCGCTAAC
1 TTGGAGGTTGCGACTCTTCGCCTGCGAACCTTAATATTACAGCTGGGAGCTTTGCTCTCGCTAAC
*
48036088 TGCT
66 TGTT
** * * * *
48036092 TTGGAGGTT-ATAGCTCTTCGCCTGTGAACCTTAATGTTACAACTGGGAGCTTTGCTTTCGCTAA
1 TTGGAGGTTGCGA-CTCTTCGCCTGCGAACCTTAATATTACAGCTGGGAGCTTTGCTCTCGCTAA
48036156 CTGTT
65 CTGTT
48036161 TTGGAGG
1 TTGGAGG
48036168 GTTCGGGTAA
Statistics
Matches: 125, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
68 1 0.01
69 124 0.99
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (69 bp):
TTGGAGGTTGCGACTCTTCGCCTGCGAACCTTAATATTACAGCTGGGAGCTTTGCTCTCGCTAAC
TGTT
Found at i:48042648 original size:24 final size:24
Alignment explanation
Indices: 48042621--48042674 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
48042611 TAACAGGTAA
48042621 CTCCGAAGAGCTATTACCAGGAAG
1 CTCCGAAGAGCTATTACCAGGAAG
*
48042645 CTCCGAAGAGCTATTACTAGGAAG
1 CTCCGAAGAGCTATTACCAGGAAG
48042669 CTCCGA
1 CTCCGA
48042675 TAGCCATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (24 bp):
CTCCGAAGAGCTATTACCAGGAAG
Found at i:48042690 original size:24 final size:23
Alignment explanation
Indices: 48042613--48042692 Score: 74
Period size: 24 Copynumber: 3.3 Consensus size: 23
48042603 TGTGAGCTTA
*
48042613 ACAGGTAA-CTCCGAAGAGCTATT
1 ACAGG-AAGCTCCGAAGAGCCATT
*
48042636 ACCAGGAAGCTCCGAAGAGCTATT
1 A-CAGGAAGCTCCGAAGAGCCATT
*
48042660 ACTAGGAAGCTCCG-ATAGCCATAT
1 AC-AGGAAGCTCCGAAGAGCCAT-T
48042684 ATCAGGAAG
1 A-CAGGAAG
48042693 TTCAAGCGAG
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
23 10 0.20
24 39 0.78
25 1 0.02
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.19
Consensus pattern (23 bp):
ACAGGAAGCTCCGAAGAGCCATT
Found at i:48042743 original size:25 final size:25
Alignment explanation
Indices: 48042705--48042752 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
48042695 CAAGCGAGCC
48042705 ATATCAAGAAGCTCACAAAGAGCAT
1 ATATCAAGAAGCTCACAAAGAGCAT
* * *
48042730 ATATCAGGACGCTCATAAAGAGC
1 ATATCAAGAAGCTCACAAAGAGC
48042753 TACGGTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.17
Consensus pattern (25 bp):
ATATCAAGAAGCTCACAAAGAGCAT
Found at i:48042851 original size:64 final size:64
Alignment explanation
Indices: 48042727--48042855 Score: 154
Period size: 64 Copynumber: 2.0 Consensus size: 64
48042717 TCACAAAGAG
* * * * * * *
48042727 CATATATCAGGACGCTCATAAAGAGCTACGGTATATCCGTATTATATGTAGGATTCATACCGAT
1 CATATAACAGGACGCTCACAAAGAGCTACGGTATATCCGCAATACATGCAGGAGTCATACCGAT
*
48042791 CATATAACAGGACGCTCACAAAGAGCTGCGGTATGA-CCGCAATACATGCAGG-GTCAATACCGA
1 CATATAACAGGACGCTCACAAAGAGCTACGGTAT-ATCCGCAATACATGCAGGAGTC-ATACCGA
48042854 T
64 T
48042855 C
1 C
48042856 GAGATACTCG
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
63 2 0.04
64 52 0.95
65 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.23
Consensus pattern (64 bp):
CATATAACAGGACGCTCACAAAGAGCTACGGTATATCCGCAATACATGCAGGAGTCATACCGAT
Found at i:48063074 original size:25 final size:26
Alignment explanation
Indices: 48063035--48063083 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
48063025 TAAATTAAAT
48063035 TTAATATTAAGAAAATCACT-TTAATA
1 TTAATATTAAGAAAAT-ACTATTAATA
*
48063061 TTAA-ATTAATAAAATACTATTAA
1 TTAATATTAAGAAAATACTATTAA
48063084 AATGATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (26 bp):
TTAATATTAAGAAAATACTATTAATA
Found at i:48063101 original size:5 final size:5
Alignment explanation
Indices: 48063091--48063117 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
48063081 TAAAATGATT
48063091 ATTAA ATTAA ATTAA ATTAA ATTAA AT
1 ATTAA ATTAA ATTAA ATTAA ATTAA AT
48063118 ATTAAATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:48074104 original size:15 final size:15
Alignment explanation
Indices: 48074086--48074141 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
48074076 AAACCGCCGG
*
48074086 AGAAGGAGGAGCCGA
1 AGAAGGAGGAGCCCA
* *
48074101 AGAAGGAAGAACCCA
1 AGAAGGAGGAGCCCA
*
48074116 AGAAAGAGGAGCCCA
1 AGAAGGAGGAGCCCA
48074131 AGAAGGAGGAG
1 AGAAGGAGGAG
48074142 GAGCCGAAGA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.46, C:0.14, G:0.39, T:0.00
Consensus pattern (15 bp):
AGAAGGAGGAGCCCA
Found at i:48074158 original size:48 final size:50
Alignment explanation
Indices: 48074089--48074233 Score: 160
Period size: 48 Copynumber: 3.0 Consensus size: 50
48074079 CCGCCGGAGA
* *
48074089 AGGAGGAGCCGAAGAAGGAAGAACCCAAG-A-AAGAGGAGCCCAAGAAGG
1 AGGAGGAGCCGAAGAAAGAAGAACCCAAGAAGAAGAGGAGCCAAAGAAGG
48074137 AGGAGGAGCCGAAGAAAGAAGAACCCAAGAAGGAAGAGGAGCCAAAGAA--
1 AGGAGGAGCCGAAGAAAGAAGAACCCAAGAA-GAAGAGGAGCCAAAGAAGG
* * *
48074186 A-GA--ACCCAAGAAGGAAGAGGAACCCAAGAAGGAAGAGGAGCCAAAGAA
1 AGGAGGAGCC--GAAGAAAGAAGAACCCAAGAA-GAAGAGGAGCCAAAGAA
48074234 AGAAGAAGAG
Statistics
Matches: 87, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
46 3 0.03
48 67 0.77
49 2 0.02
51 15 0.17
ACGTcount: A:0.50, C:0.16, G:0.34, T:0.00
Consensus pattern (50 bp):
AGGAGGAGCCGAAGAAAGAAGAACCCAAGAAGAAGAGGAGCCAAAGAAGG
Found at i:48074191 original size:30 final size:30
Alignment explanation
Indices: 48074127--48074215 Score: 115
Period size: 30 Copynumber: 2.9 Consensus size: 30
48074117 GAAAGAGGAG
* *
48074127 CCCAAGAAGGAGGAGGAGCCGAAGAAAGAAGAA
1 CCCAAGAAGGAAGAGGAGCC-AA-AGA-AAGAA
48074160 CCCAAGAAGGAAGAGGAGCCAAAGAAAGAA
1 CCCAAGAAGGAAGAGGAGCCAAAGAAAGAA
* *
48074190 CCCAAGAAGGAAGAGGAACCCAAGAA
1 CCCAAGAAGGAAGAGGAGCCAAAGAA
48074216 GGAAGAGGAG
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
30 29 0.56
31 2 0.04
32 2 0.04
33 19 0.37
ACGTcount: A:0.51, C:0.18, G:0.31, T:0.00
Consensus pattern (30 bp):
CCCAAGAAGGAAGAGGAGCCAAAGAAAGAA
Found at i:48074238 original size:18 final size:18
Alignment explanation
Indices: 48074091--48074239 Score: 121
Period size: 18 Copynumber: 9.1 Consensus size: 18
48074081 GCCGGAGAAG
*
48074091 GAGGAGCCGAAGAAGGAA
1 GAGGAGCCCAAGAAGGAA
48074109 GA--A-CCCAAG-A--AA
1 GAGGAGCCCAAGAAGGAA
*
48074121 GAGGAGCCCAAGAAGGAG
1 GAGGAGCCCAAGAAGGAA
* *
48074139 GAGGAGCCGAAGAAAGAA
1 GAGGAGCCCAAGAAGGAA
48074157 GA--A-CCCAAGAAGGAA
1 GAGGAGCCCAAGAAGGAA
48074172 GAGGAG-CC-A-AA-GAA
1 GAGGAGCCCAAGAAGGAA
*
48074186 -A-GAACCCAAGAAGGAA
1 GAGGAGCCCAAGAAGGAA
*
48074202 GAGGAACCCAAGAAGGAA
1 GAGGAGCCCAAGAAGGAA
* *
48074220 GAGGAGCCAAAGAAAGAA
1 GAGGAGCCCAAGAAGGAA
48074238 GA
1 GA
48074240 AGAGAAACAG
Statistics
Matches: 105, Mismatches: 11, Indels: 30
0.72 0.08 0.21
Matches are distributed among these distances:
12 6 0.06
13 3 0.03
14 6 0.06
15 27 0.26
16 7 0.07
17 4 0.04
18 52 0.50
ACGTcount: A:0.50, C:0.15, G:0.34, T:0.00
Consensus pattern (18 bp):
GAGGAGCCCAAGAAGGAA
Found at i:48084120 original size:19 final size:19
Alignment explanation
Indices: 48084096--48084168 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
48084086 AATCATATCT
48084096 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
48084115 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
48084134 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
48084153 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
48084169 CTTAAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:48084865 original size:30 final size:30
Alignment explanation
Indices: 48084831--48084891 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
48084821 GTGAATTTAA
48084831 AATCAATGATGATTACAACAATTCTTTTTT
1 AATCAATGATGATTACAACAATTCTTTTTT
48084861 AATCAATGATGATTACAACAATTCTTTTTT
1 AATCAATGATGATTACAACAATTCTTTTTT
48084891 A
1 A
48084892 CAAATTAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.43
Consensus pattern (30 bp):
AATCAATGATGATTACAACAATTCTTTTTT
Found at i:48086766 original size:13 final size:13
Alignment explanation
Indices: 48086723--48086767 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
48086713 TTTAAATAAA
48086723 CAGTTAATAGAAT
1 CAGTTAATAGAAT
*
48086736 CAGTTGATCA-AAT
1 CAGTTAAT-AGAAT
*
48086749 TAGTTAATAGAAT
1 CAGTTAATAGAAT
48086762 CAGTTA
1 CAGTTA
48086768 GTCAAACCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
12 1 0.04
13 24 0.92
14 1 0.04
ACGTcount: A:0.42, C:0.09, G:0.16, T:0.33
Consensus pattern (13 bp):
CAGTTAATAGAAT
Found at i:48088772 original size:192 final size:192
Alignment explanation
Indices: 48088445--48088832 Score: 767
Period size: 192 Copynumber: 2.0 Consensus size: 192
48088435 TATAGGAGGA
48088445 GGACTATGGAGTATATGCAAGGCCATGGCAATAGAAAATGGATGCCTTGTGCCGAGACATATAGA
1 GGACTATGGAGTATATGCAAGGCCATGGCAATAGAAAATGGATGCCTTGTGCCGAGACATATAGA
*
48088510 CACTACATCTTGATGTCGAGGACATGGATTAAGTCTTTTGTTCTAACAATCTTTTAGCCATAGAA
66 CACTACATCTTGATGTCGAGGACATGGATTAAATCTTTTGTTCTAACAATCTTTTAGCCATAGAA
48088575 ATTGTAGTGGTGGATTTACCTTTAGAGTTTAAAGTGCCAAAAGAGGTTTTCGAGGGAAGAAG
131 ATTGTAGTGGTGGATTTACCTTTAGAGTTTAAAGTGCCAAAAGAGGTTTTCGAGGGAAGAAG
48088637 GGACTATGGAGTATATGCAAGGCCATGGCAATAGAAAATGGATGCCTTGTGCCGAGACATATAGA
1 GGACTATGGAGTATATGCAAGGCCATGGCAATAGAAAATGGATGCCTTGTGCCGAGACATATAGA
48088702 CACTACATCTTGATGTCGAGGACATGGATTAAATCTTTTGTTCTAACAATCTTTTAGCCATAGAA
66 CACTACATCTTGATGTCGAGGACATGGATTAAATCTTTTGTTCTAACAATCTTTTAGCCATAGAA
48088767 ATTGTAGTGGTGGATTTACCTTTAGAGTTTAAAGTGCCAAAAGAGGTTTTCGAGGGAAGAAG
131 ATTGTAGTGGTGGATTTACCTTTAGAGTTTAAAGTGCCAAAAGAGGTTTTCGAGGGAAGAAG
48088829 GGAC
1 GGAC
48088833 CTACGGCCAT
Statistics
Matches: 195, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
192 195 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (192 bp):
GGACTATGGAGTATATGCAAGGCCATGGCAATAGAAAATGGATGCCTTGTGCCGAGACATATAGA
CACTACATCTTGATGTCGAGGACATGGATTAAATCTTTTGTTCTAACAATCTTTTAGCCATAGAA
ATTGTAGTGGTGGATTTACCTTTAGAGTTTAAAGTGCCAAAAGAGGTTTTCGAGGGAAGAAG
Found at i:48089770 original size:26 final size:26
Alignment explanation
Indices: 48089734--48089794 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
48089724 TGGCTTGTCA
* *
48089734 ATTTAAGATCATAGTCCGACTCGCTG
1 ATTTAAGATCACAGCCCGACTCGCTG
* *
48089760 ATTTAAGATCACAGCCCGATTTGCTG
1 ATTTAAGATCACAGCCCGACTCGCTG
48089786 ATTTAAGAT
1 ATTTAAGAT
48089795 TGTAGCCTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (26 bp):
ATTTAAGATCACAGCCCGACTCGCTG
Found at i:48089858 original size:54 final size:54
Alignment explanation
Indices: 48089800--48089926 Score: 191
Period size: 54 Copynumber: 2.4 Consensus size: 54
48089790 AAGATTGTAG
*
48089800 CCTTATACTTACAAGATTTTTCAAATCTTGTGGCTCGCCGATTTAAGATCACAA
1 CCTTATACTTACAAGATTTTTCAAATCTTGTGACTCGCCGATTTAAGATCACAA
* * * * *
48089854 CCTTATACTTACAAGATTTTTTAAATGTTGTGACTCGTCGATTTAAGATCCCAG
1 CCTTATACTTACAAGATTTTTCAAATCTTGTGACTCGCCGATTTAAGATCACAA
*
48089908 CCTTATACTTATAAGATTT
1 CCTTATACTTACAAGATTT
48089927 CCAAAATCTT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.39
Consensus pattern (54 bp):
CCTTATACTTACAAGATTTTTCAAATCTTGTGACTCGCCGATTTAAGATCACAA
Found at i:48090206 original size:24 final size:23
Alignment explanation
Indices: 48090177--48090229 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
48090167 TAACTCCTTG
48090177 AATTTTTGCTGTACAGCTCG-CT
1 AATTTTTGCTGTACAGCTCGTCT
*
48090199 AAATTTTTGTTGTACAGCTCGTCT
1 -AATTTTTGCTGTACAGCTCGTCT
48090223 AATTTTT
1 AATTTTT
48090230 CTATATACGC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
23 26 0.93
24 2 0.07
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (23 bp):
AATTTTTGCTGTACAGCTCGTCT
Found at i:48090566 original size:19 final size:20
Alignment explanation
Indices: 48090539--48090576 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
48090529 ATGATATCAT
48090539 CTAGCTCGCCA-CTTCGCTC
1 CTAGCTCGCCATCTTCGCTC
*
48090558 CTAGTTCGCCATCTTCGCT
1 CTAGCTCGCCATCTTCGCT
48090577 AGCTTGCCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.11, C:0.42, G:0.16, T:0.32
Consensus pattern (20 bp):
CTAGCTCGCCATCTTCGCTC
Found at i:48100234 original size:9 final size:9
Alignment explanation
Indices: 48100217--48100263 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
48100207 CCAAACATTT
*
48100217 ATTTTAAAA
1 ATTTAAAAA
48100226 ATTTAAAAA
1 ATTTAAAAA
**
48100235 ATATTTTAAA
1 AT-TTAAAAA
48100245 A-TTAAAAA
1 ATTTAAAAA
48100253 ATTTAAAAA
1 ATTTAAAAA
48100262 AT
1 AT
48100264 AAATAAATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
8 6 0.19
9 19 0.61
10 6 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (9 bp):
ATTTAAAAA
Found at i:48100251 original size:18 final size:20
Alignment explanation
Indices: 48100216--48100254 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
48100206 ACCAAACATT
48100216 TATTTTAAAAATTTAAAAAA
1 TATTTTAAAAATTTAAAAAA
48100236 TATTTT-AAAA-TTAAAAAA
1 TATTTTAAAAATTTAAAAAA
48100254 T
1 T
48100255 TTAAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
19 4 0.21
20 6 0.32
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TATTTTAAAAATTTAAAAAA
Found at i:48101414 original size:19 final size:19
Alignment explanation
Indices: 48101386--48101439 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
48101376 AATCTTCAGG
48101386 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
48101405 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
48101424 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
48101440 AGATATGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:48101446 original size:22 final size:23
Alignment explanation
Indices: 48101418--48101462 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
48101408 ATACAATCTT
48101418 AGATATGA-TATGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
*
48101440 AGATATGATTTTGTAATCTTAGA
1 AGATATGATTATGTAATCTTAGA
48101463 GATTTAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (23 bp):
AGATATGATTATGTAATCTTAGA
Found at i:48101472 original size:22 final size:23
Alignment explanation
Indices: 48101428--48101472 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
48101418 AGATATGATA
*
48101428 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
48101451 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
48101473 GTAGATACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:48104500 original size:10 final size:11
Alignment explanation
Indices: 48104470--48104525 Score: 55
Period size: 10 Copynumber: 5.3 Consensus size: 11
48104460 GAGTGATTTC
48104470 TTAAATAATTA
1 TTAAATAATTA
48104481 TTAAATAATT-
1 TTAAATAATTA
*
48104491 TTAAAAAATTA
1 TTAAATAATTA
*
48104502 TTTAAA-AGTTA
1 -TTAAATAATTA
*
48104513 TT-AAGAATTA
1 TTAAATAATTA
48104523 TTA
1 TTA
48104526 TAAATTAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
9 2 0.05
10 17 0.45
11 14 0.37
12 5 0.13
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (11 bp):
TTAAATAATTA
Found at i:48104783 original size:12 final size:11
Alignment explanation
Indices: 48104759--48104805 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
48104749 TTATAATTCA
*
48104759 TAATAACTTTT
1 TAATAATTTTT
*
48104770 AAATAATTTTT
1 TAATAATTTTT
48104781 TAA-AATTTTT
1 TAATAATTTTT
48104791 TAATAATTATTT
1 TAATAATT-TTT
48104803 TAA
1 TAA
48104806 AAACAATTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
10 10 0.32
11 15 0.48
12 6 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (11 bp):
TAATAATTTTT
Found at i:48104787 original size:10 final size:10
Alignment explanation
Indices: 48104774--48104807 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
48104764 ACTTTTAAAT
48104774 AATTTTTTAA
1 AATTTTTTAA
48104784 AATTTTTTAA
1 AATTTTTTAA
48104794 TAATTATTTTAA
1 -AATT-TTTTAA
48104806 AA
1 AA
48104808 ACAATTTCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 10 0.45
11 6 0.27
12 6 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:48104790 original size:21 final size:22
Alignment explanation
Indices: 48104766--48104807 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
48104756 TCATAATAAC
48104766 TTTTAAATAATT-TTTTAAAAT
1 TTTTAAATAATTATTTTAAAAT
*
48104787 TTTTTAATAATTATTTTAAAA
1 TTTTAAATAATTATTTTAAAA
48104808 ACAATTTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTTTAAATAATTATTTTAAAAT
Found at i:48112204 original size:27 final size:28
Alignment explanation
Indices: 48112174--48112246 Score: 105
Period size: 27 Copynumber: 2.6 Consensus size: 28
48112164 TAAAAAAATA
48112174 ACCAAAATATTATAAAATTTT-TTATTT
1 ACCAAAATATTATAAAATTTTATTATTT
*
48112201 ACCAAAATATTATAATTATTTTTATTATTT
1 ACCAAAATATTATAA--AATTTTATTATTT
48112231 ACCAAAATA-TATAAAA
1 ACCAAAATATTATAAAA
48112247 AAAACCTGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 16 0.39
29 10 0.24
30 15 0.37
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (28 bp):
ACCAAAATATTATAAAATTTTATTATTT
Found at i:48112384 original size:27 final size:27
Alignment explanation
Indices: 48112291--48112391 Score: 89
Period size: 27 Copynumber: 3.7 Consensus size: 27
48112281 GCCTGATCAG
* * * *
48112291 GCCAATGGCATTGGTGGCACCAAAGGT
1 GCCAAAGGTATTGGCGGCACCAATGGT
*** *
48112318 GCCAAAACCATTGGCGGCACCAATTGT
1 GCCAAAGGTATTGGCGGCACCAATGGT
*
48112345 GCCAAAGGTATTGGCAGCACCAATGGT
1 GCCAAAGGTATTGGCGGCACCAATGGT
48112372 GCCATACA-G-ATTGGCGGCAC
1 GCCA-A-AGGTATTGGCGGCAC
48112392 TACTCGTGTT
Statistics
Matches: 60, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
27 57 0.95
28 2 0.03
29 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.29, T:0.18
Consensus pattern (27 bp):
GCCAAAGGTATTGGCGGCACCAATGGT
Found at i:48112490 original size:11 final size:11
Alignment explanation
Indices: 48112474--48112513 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
48112464 GGTGTTGCGG
*
48112474 AAAAGAAAAGA
1 AAAAGAAGAGA
48112485 AAAAG-AGAGA
1 AAAAGAAGAGA
*
48112495 AAGAGAAGAGA
1 AAAAGAAGAGA
48112506 AAAAGAAG
1 AAAAGAAG
48112514 GTATTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:48112506 original size:21 final size:20
Alignment explanation
Indices: 48112473--48112511 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
48112463 AGGTGTTGCG
48112473 GAAAAGAAAAGAAAAAGAGA
1 GAAAAGAAAAGAAAAAGAGA
*
48112493 GAAAGAGAAGAGAAAAAGA
1 GAAA-AGAAAAGAAAAAGA
48112512 AGGTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (20 bp):
GAAAAGAAAAGAAAAAGAGA
Found at i:48112680 original size:19 final size:20
Alignment explanation
Indices: 48112645--48112686 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
48112635 TTATTGTTGT
* *
48112645 TGTTATTGTTAGTATTAATA
1 TGTTATTGATAGTATTAAGA
48112665 TGTTATTGAT-GTATTAAGA
1 TGTTATTGATAGTATTAAGA
48112684 TGT
1 TGT
48112687 AACTTAGTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (20 bp):
TGTTATTGATAGTATTAAGA
Found at i:48113484 original size:18 final size:18
Alignment explanation
Indices: 48113461--48113498 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
48113451 GGTTGGTGGT
48113461 GAAGAAGAAGGTGCTGGC
1 GAAGAAGAAGGTGCTGGC
*
48113479 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGCTGGC
48113497 GA
1 GA
48113499 TCATTGGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.08, G:0.47, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGCTGGC
Found at i:48117666 original size:16 final size:15
Alignment explanation
Indices: 48117645--48117674 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
48117635 AATAAAAATA
48117645 TATTATTTTCATATTT
1 TATTATTTT-ATATTT
48117661 TATTATTTTATATT
1 TATTATTTTATATT
48117675 ATTTCAGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTATTTTATATTT
Found at i:48118275 original size:4 final size:4
Alignment explanation
Indices: 48118244--48118362 Score: 61
Period size: 4 Copynumber: 28.8 Consensus size: 4
48118234 CTTCTTCTTC
* * *
48118244 TTCT TTTT TTCT TTC- TCCT TTCCTT TTCT TTCA TT-T TTCT TCTCCT
1 TTCT TTCT TTCT TTCT TTCT TT-C-T TTCT TTCT TTCT TTCT T-T-CT
*
48118290 TTCCT CTTC- TTC- TTCT TTCCTT TTCT TTCC TTC- TT-T TTCT TTCT
1 TT-CT -TTCT TTCT TTCT TT-C-T TTCT TTCT TTCT TTCT TTCT TTCT
*
48118334 TTGCT CTCCT TTCT TTCT TTCT TTCT TTC
1 TT-CT -TTCT TTCT TTCT TTCT TTCT TTC
48118363 CCTCTCCTTC
Statistics
Matches: 92, Mismatches: 9, Indels: 28
0.71 0.07 0.22
Matches are distributed among these distances:
3 14 0.15
4 52 0.57
5 14 0.15
6 12 0.13
ACGTcount: A:0.01, C:0.30, G:0.01, T:0.68
Consensus pattern (4 bp):
TTCT
Found at i:48118324 original size:27 final size:27
Alignment explanation
Indices: 48118237--48118335 Score: 80
Period size: 27 Copynumber: 3.6 Consensus size: 27
48118227 CATCCCTCTT
* *
48118237 CTTCTTCTTCTTTTTTTCTTTCTCCTTTC
1 CTTCTTCTTCATTCTTTCTTT-T-CTTTC
*
48118266 CTT-TTCTTTCATT-TTTCTTCTCCTTTC
1 CTTCTTC-TTCATTCTTTCTT-TTCTTTC
48118293 C-TCTTCTTC-TTCTTTCCTTTTCTTTC
1 CTTCTTCTTCATTCTTT-CTTTTCTTTC
* *
48118319 CTTCTTTTTCTTTCTTT
1 CTTCTTCTTCATTCTTT
48118336 GCTCTCCTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
25 2 0.03
26 14 0.24
27 19 0.32
28 15 0.25
29 9 0.15
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (27 bp):
CTTCTTCTTCATTCTTTCTTTTCTTTC
Found at i:48118328 original size:10 final size:11
Alignment explanation
Indices: 48118234--48118334 Score: 63
Period size: 10 Copynumber: 9.5 Consensus size: 11
48118224 TTCCATCCCT
48118234 CTTCTTC-TT-
1 CTTCTTCTTTC
*
48118243 CTTCTTTTTTTC
1 CTTC-TTCTTTC
* *
48118255 TTTCTCCTTTC
1 CTTCTTCTTTC
48118266 CTT-TTCTTTC
1 CTTCTTCTTTC
* *
48118276 ATTTTTCTTCTC
1 CTTCTTCTT-TC
*
48118288 CTT-TCCTCTT-
1 CTTCTTCT-TTC
48118298 CTTCTTCTTTC
1 CTTCTTCTTTC
48118309 CTT-TTCTTTC
1 CTTCTTCTTTC
48118319 CTTCTT-TTTC
1 CTTCTTCTTTC
*
48118329 TTTCTT
1 CTTCTT
48118335 TGCTCTCCTT
Statistics
Matches: 72, Mismatches: 11, Indels: 17
0.72 0.11 0.17
Matches are distributed among these distances:
9 4 0.06
10 34 0.47
11 26 0.36
12 8 0.11
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (11 bp):
CTTCTTCTTTC
Found at i:48118507 original size:27 final size:27
Alignment explanation
Indices: 48118403--48118500 Score: 169
Period size: 27 Copynumber: 3.6 Consensus size: 27
48118393 CCTATTATGG
*
48118403 CATTGGTGCCGCCAATGGTTTTGGCAC
1 CATTGGTGCCGCCAATGGCTTTGGCAC
48118430 CATTGGTGCCGCCAATGGCTTTGGCAC
1 CATTGGTGCCGCCAATGGCTTTGGCAC
*
48118457 CATTGGTGCCGCCAATGGCTTTGGAAC
1 CATTGGTGCCGCCAATGGCTTTGGCAC
*
48118484 CTTTGGTGCCGCCAATG
1 CATTGGTGCCGCCAATG
48118501 CCATTGGCCT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.15, C:0.28, G:0.30, T:0.28
Consensus pattern (27 bp):
CATTGGTGCCGCCAATGGCTTTGGCAC
Found at i:48118606 original size:27 final size:27
Alignment explanation
Indices: 48118576--48118628 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
48118566 TTTGGAAATT
48118576 AATAAAAATAA-TTATAATATTTTGGTA
1 AATAAAAA-AAGTTATAATATTTTGGTA
48118603 AATAAAAAAAGTTATAATATTTTGGT
1 AATAAAAAAAGTTATAATATTTTGGT
48118629 TATTTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 2 0.08
27 23 0.92
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (27 bp):
AATAAAAAAAGTTATAATATTTTGGTA
Found at i:48118818 original size:17 final size:17
Alignment explanation
Indices: 48118792--48118826 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
48118782 GCTTGACGAT
*
48118792 AAATAGTATAATGACAC
1 AAATAATATAATGACAC
48118809 AAATAATATAATGACAC
1 AAATAATATAATGACAC
48118826 A
1 A
48118827 TAGTAATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.57, C:0.11, G:0.09, T:0.23
Consensus pattern (17 bp):
AAATAATATAATGACAC
Found at i:48126748 original size:20 final size:18
Alignment explanation
Indices: 48126709--48126754 Score: 74
Period size: 18 Copynumber: 2.6 Consensus size: 18
48126699 TTATGTCAAG
*
48126709 TGTGTATCTTAACCCTTA
1 TGTGTATCCTAACCCTTA
48126727 TGTGTATCCTAACCCTTA
1 TGTGTATCCTAACCCTTA
*
48126745 TATGTATCCT
1 TGTGTATCCT
48126755 TTTTCCACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (18 bp):
TGTGTATCCTAACCCTTA
Found at i:48129897 original size:41 final size:41
Alignment explanation
Indices: 48129800--48129909 Score: 129
Period size: 37 Copynumber: 2.8 Consensus size: 41
48129790 GGATAATTTA
*
48129800 AAGTAATAAATTGACACCCAATGTCTCATCG-ACTAAACCG
1 AAGTAGTAAATTGACACCCAATGTCTCATCGAACTAAACCG
* * * *
48129840 -A--AGTAAATTGGCACCCAATGCCTCATCGAATTAATCCG
1 AAGTAGTAAATTGACACCCAATGTCTCATCGAACTAAACCG
* *
48129878 AAGTAGTAAATTGAAACCCAGTGTCTCATCGA
1 AAGTAGTAAATTGACACCCAATGTCTCATCGA
48129910 CTTGAAGTCG
Statistics
Matches: 57, Mismatches: 9, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
37 24 0.42
38 7 0.12
39 2 0.04
41 24 0.42
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (41 bp):
AAGTAGTAAATTGACACCCAATGTCTCATCGAACTAAACCG
Found at i:48130752 original size:8 final size:9
Alignment explanation
Indices: 48130736--48130798 Score: 58
Period size: 8 Copynumber: 6.9 Consensus size: 9
48130726 CTTGCATTTC
48130736 TTCTTTCTT
1 TTCTTTCTT
48130745 TT-TTTCTT
1 TTCTTTCTT
48130753 TTCTTTCTT
1 TTCTTTCTT
* *
48130762 TCCTTTCAGT
1 TTCTTTC-TT
48130772 TTCGTTTCGTT
1 TTC-TTTC-TT
*
48130783 TTGTTTC-T
1 TTCTTTCTT
48130791 TTCTTTCT
1 TTCTTTCT
48130799 CTTTTTATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
8 15 0.35
9 14 0.33
10 7 0.16
11 7 0.16
ACGTcount: A:0.02, C:0.21, G:0.06, T:0.71
Consensus pattern (9 bp):
TTCTTTCTT
Found at i:48130840 original size:17 final size:18
Alignment explanation
Indices: 48130804--48130842 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
48130794 TTTCTCTTTT
*
48130804 TATTTCATTTACTGATTA
1 TATTTAATTTACTGATTA
*
48130822 TATTTAATTTA-TTATTA
1 TATTTAATTTACTGATTA
48130839 TATT
1 TATT
48130843 ATCTATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (18 bp):
TATTTAATTTACTGATTA
Found at i:48132864 original size:13 final size:13
Alignment explanation
Indices: 48132846--48132888 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
48132836 TAGATTTTTC
48132846 CTAAATATTATCA
1 CTAAATATTATCA
*
48132859 CTAAATA--AT-T
1 CTAAATATTATCA
48132869 CTAAATATTATCA
1 CTAAATATTATCA
48132882 CTAAATA
1 CTAAATA
48132889 ATACAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.28
11 2 0.08
12 2 0.08
13 14 0.56
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:48132876 original size:23 final size:23
Alignment explanation
Indices: 48132846--48132890 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
48132836 TAGATTTTTC
48132846 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
48132869 CTAAATATTATCACTAAATAAT
1 CTAAATATTATCACTAAATAAT
48132891 ACAAAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:48132897 original size:23 final size:23
Alignment explanation
Indices: 48132848--48132897 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
48132838 GATTTTTCCT
* *
48132848 AAATATTATCACTAAATAATTCT
1 AAATATTATCACTAAATAATACA
48132871 AAATATTATCACTAAATAATACA
1 AAATATTATCACTAAATAATACA
48132894 AAAT
1 AAAT
48132898 TAAAAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATATTATCACTAAATAATACA
Found at i:48132930 original size:18 final size:18
Alignment explanation
Indices: 48132907--48132955 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
48132897 TTAAAAAATC
*
48132907 AAATTTAAACTAGAGATT
1 AAATTTAAACTAAAGATT
*
48132925 AAATTTAAACTAAAGTTT
1 AAATTTAAACTAAAGATT
*
48132943 AAGTTTAAACTAA
1 AAATTTAAACTAA
48132956 TTACAGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (18 bp):
AAATTTAAACTAAAGATT
Found at i:48134480 original size:5 final size:5
Alignment explanation
Indices: 48134470--48134498 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
48134460 AATTATTAAG
48134470 TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATA
48134499 ATGATAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:48134552 original size:24 final size:23
Alignment explanation
Indices: 48134520--48134586 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 23
48134510 AAGAATAAAT
48134520 AAAAAGAAAGAAACGAAACG-AAAC
1 AAAAAGAAAGAAA-GAAA-GAAAAC
*
48134544 AAAAAGAAAAGAAAGAAAGAAAAG
1 AAAAAG-AAAGAAAGAAAGAAAAC
*
48134568 AAAAAGGAAAGAAATAAAG
1 AAAAA-GAAAGAAAGAAAG
48134587 GAGAAAACCA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
23 1 0.03
24 29 0.76
25 8 0.21
ACGTcount: A:0.75, C:0.04, G:0.19, T:0.01
Consensus pattern (23 bp):
AAAAAGAAAGAAAGAAAGAAAAC
Found at i:48134588 original size:13 final size:12
Alignment explanation
Indices: 48134544--48134586 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
48134534 GAAACGAAAC
48134544 AAAAAGAAAAGA
1 AAAAAGAAAAGA
48134556 AAGAAAGAAAAG-
1 AA-AAAGAAAAGA
*
48134568 AAAAAGGAAAGA
1 AAAAAGAAAAGA
48134580 AATAAAG
1 AA-AAAG
48134587 GAGAAAACCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 8 0.30
12 6 0.22
13 13 0.48
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (12 bp):
AAAAAGAAAAGA
Found at i:48135908 original size:24 final size:24
Alignment explanation
Indices: 48135881--48135927 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
48135871 ATTGAAATGG
48135881 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
48135905 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
48135928 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:48145407 original size:6 final size:6
Alignment explanation
Indices: 48145359--48145392 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
48145349 CATTAAATTA
*
48145359 TTTATT TTCTATT TTTGTT TTTATT TTTATT TTT
1 TTTATT TT-TATT TTTATT TTTATT TTTATT TTT
48145393 TTCTCTCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:48146717 original size:6 final size:6
Alignment explanation
Indices: 48146706--48146749 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
48146696 GAGATCACTA
48146706 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
48146749 A
1 A
48146750 GAACAAAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 3 0.09
5 13 0.38
6 18 0.53
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (6 bp):
ACTAAT
Found at i:48146728 original size:20 final size:21
Alignment explanation
Indices: 48146702--48146747 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
48146692 AGCCGAGATC
48146702 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
48146723 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
48146743 ACTAA
1 ACTAA
48146748 TAGAACAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:48146736 original size:15 final size:14
Alignment explanation
Indices: 48146712--48146741 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
48146702 ACTAACTAAT
48146712 ACTAATCTAATCTA
1 ACTAATCTAATCTA
48146726 ACTAATACTAATCTA
1 ACTAAT-CTAATCTA
48146741 A
1 A
48146742 TACTAATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (14 bp):
ACTAATCTAATCTA
Found at i:48146741 original size:11 final size:11
Alignment explanation
Indices: 48146702--48146748 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
48146692 AGCCGAGATC
48146702 ACTAA-CTAAT
1 ACTAATCTAAT
48146712 ACTAATCTAAT
1 ACTAATCTAAT
48146723 -CTAA-CTAAT
1 ACTAATCTAAT
48146732 ACTAATCTAAT
1 ACTAATCTAAT
48146743 ACTAAT
1 ACTAAT
48146749 AGAACAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:48146763 original size:27 final size:27
Alignment explanation
Indices: 48146729--48146784 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
48146719 TAATCTAACT
48146729 AATACTAATCTAATACTAATAGAACAA
1 AATACTAATCTAATACTAATAGAACAA
* *
48146756 AATACTAATGTAATACTAATAGAATAA
1 AATACTAATCTAATACTAATAGAACAA
48146783 AA
1 AA
48146785 AATACTGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (27 bp):
AATACTAATCTAATACTAATAGAACAA
Found at i:48147354 original size:15 final size:15
Alignment explanation
Indices: 48147334--48147366 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
48147324 AAAATAATAA
48147334 AAATAATAAAT-AAGT
1 AAATAA-AAATGAAGT
48147349 AAATAAAAATGAAGT
1 AAATAAAAATGAAGT
48147364 AAA
1 AAA
48147367 AGAACCCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAATAAAAATGAAGT
Found at i:48148961 original size:121 final size:121
Alignment explanation
Indices: 48148747--48148991 Score: 463
Period size: 121 Copynumber: 2.0 Consensus size: 121
48148737 GTTTGTCTAG
*
48148747 GAAGAGCAGATCTAATTATATTAGTGTCTATAATTGATTTCTTTTGTGTAATACTAATCGATAGG
1 GAAGAGCAGATCTAATTATATTAGTGTCTATAATTAATTTCTTTTGTGTAATACTAATCGATAGG
48148812 GCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGAACCCACGGTTATGGACCC
66 GCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGAACCCACGGTTATGGACCC
*
48148868 GAAGAGCAGATCTAATTGTATTAGTGTCTATAATTAATTTCTTTTGTGTAATACTAATCGATAGG
1 GAAGAGCAGATCTAATTATATTAGTGTCTATAATTAATTTCTTTTGTGTAATACTAATCGATAGG
*
48148933 GCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGAACTCACGGTTATGGACCC
66 GCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGAACCCACGGTTATGGACCC
48148989 GAA
1 GAA
48148992 TCCATTAGTA
Statistics
Matches: 121, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
121 121 1.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.33
Consensus pattern (121 bp):
GAAGAGCAGATCTAATTATATTAGTGTCTATAATTAATTTCTTTTGTGTAATACTAATCGATAGG
GCCTCATTGGTAAGTGCTACAAGATCTCGTGCATTGGAACCCACGGTTATGGACCC
Found at i:48149429 original size:15 final size:15
Alignment explanation
Indices: 48149409--48149451 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 15
48149399 CCGTATCAAG
48149409 GTCACTATCAATAGC
1 GTCACTATCAATAGC
*
48149424 GTCACTAGCATCAATATC
1 GTCACT---ATCAATAGC
48149442 GTCACTATCA
1 GTCACTATCA
48149452 TCAATATCGA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
15 10 0.42
18 14 0.58
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (15 bp):
GTCACTATCAATAGC
Found at i:48149458 original size:18 final size:18
Alignment explanation
Indices: 48149415--48149472 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
48149405 CAAGGTCACT
* *
48149415 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
48149433 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
48149451 ATCAATATCG--A-TATC
1 ATCAATATCGTCACTATC
48149466 ATCAATA
1 ATCAATA
48149473 AGAAAACCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
15 11 0.29
16 1 0.03
18 26 0.68
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:48159310 original size:20 final size:20
Alignment explanation
Indices: 48159251--48159310 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
48159241 AAAAATATAA
*
48159251 ATTTTGGAA-TTTTTATAAAT
1 ATTTT-GAATTTTTTATAATT
* * *
48159271 ATTTTAAATTTTTGAAAATT
1 ATTTTGAATTTTTTATAATT
48159291 ATTTTGAATTTTTTATAATT
1 ATTTTGAATTTTTTATAATT
48159311 TTTGTTGAGA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTTATAATT
Found at i:48159686 original size:8 final size:9
Alignment explanation
Indices: 48159668--48159802 Score: 64
Period size: 9 Copynumber: 14.6 Consensus size: 9
48159658 ATTATTTTAG
48159668 AAAATTTTT
1 AAAATTTTT
48159677 AAAA-TTTT
1 AAAATTTTT
**
48159685 AATTTTCTTT
1 AAAATT-TTT
*
48159695 ATATATTTTTT
1 A-A-AATTTTT
*
48159706 AGAATTTTTT
1 A-AAATTTTT
48159716 AAAA-TTTT
1 AAAATTTTT
*
48159724 ATAATTTTCT
1 AAAATTTT-T
* *
48159734 AAAA-ATAT
1 AAAATTTTT
48159742 AAAA--TTT
1 AAAATTTTT
*
48159749 GAAATTTTT
1 AAAATTTTT
48159758 ATAAATATTTT
1 A-AAAT-TTTT
*
48159769 AAAATTTTA
1 AAAATTTTT
48159778 AAAATAATTTT
1 AAAAT--TTTT
*
48159789 AAAATTTTA
1 AAAATTTTT
48159798 AAAAT
1 AAAAT
48159803 AATTTTATTT
Statistics
Matches: 99, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
7 5 0.05
8 18 0.18
9 30 0.30
10 24 0.24
11 19 0.19
12 3 0.03
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (9 bp):
AAAATTTTT
Found at i:48159729 original size:18 final size:18
Alignment explanation
Indices: 48159702--48159797 Score: 72
Period size: 19 Copynumber: 5.3 Consensus size: 18
48159692 TTTATATATT
* *
48159702 TTTTAGAATTTTTTAAAA
1 TTTTATAATATTTTAAAA
48159720 TTTTATAAT-TTTCTAAAA
1 TTTTATAATATTT-TAAAA
* * * *
48159738 --ATATAAAATTTGAAAT
1 TTTTATAATATTTTAAAA
48159754 TTTTATAAATATTTTAAAA
1 TTTTAT-AATATTTTAAAA
*
48159773 TTTTAAAAATAATTTTAAAA
1 TTTT-ATAAT-ATTTTAAAA
48159793 TTTTA
1 TTTTA
48159798 AAAATAATTT
Statistics
Matches: 61, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
16 8 0.13
17 6 0.10
18 16 0.26
19 17 0.28
20 14 0.23
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTTATAATATTTTAAAA
Found at i:48159744 original size:26 final size:24
Alignment explanation
Indices: 48159715--48159765 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
48159705 TAGAATTTTT
*
48159715 TAAAATTTTATAATTTTCTAAAAATA
1 TAAAATTTGA-AATTTT-TAAAAATA
*
48159741 TAAAATTTGAAATTTTTATAAATA
1 TAAAATTTGAAATTTTTAAAAATA
48159765 T
1 T
48159766 TTTAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 6 0.26
26 9 0.39
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (24 bp):
TAAAATTTGAAATTTTTAAAAATA
Found at i:48159775 original size:20 final size:20
Alignment explanation
Indices: 48159660--48159809 Score: 78
Period size: 20 Copynumber: 7.3 Consensus size: 20
48159650 CCAAAATTAT
*
48159660 TATTTTAGAAAATTTT-TAAA
1 TATTTTA-AAATTTTTATAAA
** *
48159680 -ATTTTAATTTTCTTTATATA
1 TATTTTAAAATT-TTTATAAA
* *
48159700 TTTTTTAGAATTTTT-TAAA
1 TATTTTAAAATTTTTATAAA
* *
48159719 -ATTTTATAATTTTCTAAAAA
1 TATTTTAAAATTTT-TATAAA
*
48159739 TATAAAATTTGAAATTTTTATAAA
1 TAT----TTTAAAATTTTTATAAA
*
48159763 TATTTTAAAA-TTTTAAAAA
1 TATTTTAAAATTTTTATAAA
*
48159782 TAATTTTAAAA-TTTTAAAAA
1 T-ATTTTAAAATTTTTATAAA
48159802 TAATTTTA
1 T-ATTTTA
48159810 TTTTATTTTT
Statistics
Matches: 102, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
18 13 0.13
19 22 0.22
20 41 0.40
21 9 0.09
24 8 0.08
25 9 0.09
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (20 bp):
TATTTTAAAATTTTTATAAA
Found at i:48159786 original size:12 final size:12
Alignment explanation
Indices: 48159771--48159809 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
48159761 AATATTTTAA
48159771 AATTTTAAAAAT
1 AATTTTAAAAAT
48159783 AATTTT---AA-
1 AATTTTAAAAAT
48159791 AATTTTAAAAAT
1 AATTTTAAAAAT
48159803 AATTTTA
1 AATTTTA
48159810 TTTTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
8 6 0.26
9 2 0.09
11 2 0.09
12 13 0.57
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
AATTTTAAAAAT
Found at i:48160152 original size:2 final size:2
Alignment explanation
Indices: 48160147--48160182 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
48160137 TTATCGAGCA
48160147 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
48160183 ATTAATATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:48160292 original size:21 final size:21
Alignment explanation
Indices: 48160253--48160306 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
48160243 TAATTAAATA
*
48160253 ATAAAATTATTTGATGTATA-
1 ATAATATTATTTGATGTATAG
48160273 ATAATTATTTATTT-ATGTATAG
1 ATAA-TA-TTATTTGATGTATAG
48160295 ATAATATTATTT
1 ATAATATTATTT
48160307 CAAGTAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 10 0.33
21 10 0.33
22 10 0.33
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (21 bp):
ATAATATTATTTGATGTATAG
Found at i:48160613 original size:43 final size:43
Alignment explanation
Indices: 48160565--48160647 Score: 166
Period size: 43 Copynumber: 1.9 Consensus size: 43
48160555 GTCATTAATG
48160565 GTTGATCCAAACAAGTATTTGATAATACGATTACTAATAATAT
1 GTTGATCCAAACAAGTATTTGATAATACGATTACTAATAATAT
48160608 GTTGATCCAAACAAGTATTTGATAATACGATTACTAATAA
1 GTTGATCCAAACAAGTATTTGATAATACGATTACTAATAA
48160648 AATTAACAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (43 bp):
GTTGATCCAAACAAGTATTTGATAATACGATTACTAATAATAT
Found at i:48162575 original size:20 final size:19
Alignment explanation
Indices: 48162550--48162610 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
48162540 CTGACTTGTT
48162550 TTAAAACAGTTTTAACTTGA
1 TTAAAACA-TTTTAACTTGA
**
48162570 TTAAAA-ATGTTTAACTCAA
1 TTAAAACAT-TTTAACTTGA
*
48162589 TTGAAACCATTTTAACTTGA
1 TT-AAAACATTTTAACTTGA
48162609 TT
1 TT
48162611 TTATCATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
18 1 0.03
19 11 0.33
20 19 0.58
21 2 0.06
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.41
Consensus pattern (19 bp):
TTAAAACATTTTAACTTGA
Done.