Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 156 of 211
Found at i:49033997 original size:15 final size:14
Alignment explanation
Indices: 49033960--49034057 Score: 81
Period size: 15 Copynumber: 6.8 Consensus size: 14
49033950 TATTACCATT
* *
49033960 TTATGGTTTATGGA
1 TTATGGTTTAGGGG
49033974 TTATGGGTTTAGGGGG
1 TTAT-GGTTTA-GGGG
*
49033990 TTATGGTTTAGAGG
1 TTATGGTTTAGGGG
* *
49034004 TTATGTGTTAAGGGT
1 TTATG-GTTTAGGGG
*
49034019 TTATGGTTTTAGGGT
1 TTATGG-TTTAGGGG
*
49034034 TTA-GGTTTAGGGT
1 TTATGGTTTAGGGG
*
49034047 TTAGGGTTTAG
1 TTATGGTTTAG
49034058 ATTAACTAGT
Statistics
Matches: 72, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
13 11 0.15
14 22 0.31
15 33 0.46
16 6 0.08
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAGGGG
Found at i:49034051 original size:20 final size:21
Alignment explanation
Indices: 49033959--49034057 Score: 69
Period size: 22 Copynumber: 4.6 Consensus size: 21
49033949 GTATTACCAT
* *
49033959 TTTATGGTTTATGGATTATGGG
1 TTTAGGGTTTA-GGTTTATGGG
*
49033981 TTTAGGGGGTTATGGTTTA-GAGG
1 TTTA-GGGTTTA-GGTTTATG-GG
* * *
49034004 -TTATGTGTTAAGGGTTTATGGT
1 TTTA-GGGTTTA-GGTTTATGGG
49034026 TTTAGGGTTTAGGTTTA-GGG
1 TTTAGGGTTTAGGTTTATGGG
49034046 TTTAGGGTTTAG
1 TTTAGGGTTTAG
49034058 ATTAACTAGT
Statistics
Matches: 61, Mismatches: 12, Indels: 10
0.73 0.14 0.12
Matches are distributed among these distances:
20 14 0.23
21 6 0.10
22 24 0.39
23 17 0.28
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.46
Consensus pattern (21 bp):
TTTAGGGTTTAGGTTTATGGG
Found at i:49034057 original size:7 final size:7
Alignment explanation
Indices: 49033959--49034057 Score: 67
Period size: 7 Copynumber: 13.7 Consensus size: 7
49033949 GTATTACCAT
*
49033959 TTTATGG
1 TTTAGGG
*
49033966 TTTATGG
1 TTTAGGG
*
49033973 ATTATGGG
1 TTTA-GGG
49033981 TTTAGGGG
1 TTTA-GGG
* *
49033989 GTTATGG
1 TTTAGGG
49033996 TTTAGAGG
1 TTTAG-GG
*
49034004 -TTATGTG
1 TTTA-GGG
*
49034011 TTAAGGG
1 TTTAGGG
*
49034018 TTTATGGT
1 TTTA-GGG
49034026 TTTAGGG
1 TTTAGGG
49034033 TTTA-GG
1 TTTAGGG
49034039 TTTAGGG
1 TTTAGGG
49034046 TTTAGGG
1 TTTAGGG
49034053 TTTAG
1 TTTAG
49034058 ATTAACTAGT
Statistics
Matches: 72, Mismatches: 14, Indels: 12
0.73 0.14 0.12
Matches are distributed among these distances:
6 6 0.08
7 44 0.61
8 22 0.31
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:49035480 original size:43 final size:41
Alignment explanation
Indices: 49035420--49035576 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 41
49035410 TATGTATTTT
**
49035420 CGTGTAAGACCACGTCTGGGATGTTGGCATCGAATTGTGTATA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATTGTG-ATA
* * *
49035463 CGTGTAAGACTATGTCTGGGACATTGGCATCGTATT-TGATT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-ATTGTGATA
* *
49035504 TGTGTAAGACC-CTGTCTGGGACAATGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TGTGA-TA
* *
49035547 CATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
49035577 TGTACGAGCC
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
40 2 0.02
41 30 0.32
42 5 0.05
43 56 0.60
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (41 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTGTGATA
Found at i:49035521 original size:84 final size:84
Alignment explanation
Indices: 49035421--49035576 Score: 201
Period size: 84 Copynumber: 1.9 Consensus size: 84
49035411 ATGTATTTTC
*** * * *
49035421 GTGTAAGACCACGTCTGGGATGTTGGCATCGA-ATTGTG-TATACGTGTAAGACTATGTCTGGGA
1 GTGTAAGACCACGTCTGGGACAATGGCATCGATA-TGTGAT-TACATGTAAGACCACGTCTGGGA
49035484 CATTGGCATCGTATTTGATTT
64 CATTGGCATCGTATTTGATTT
49035505 GTGTAAGACC-CTGTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCAC-GTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
*
49035569 GTTGGCAT
65 ATTGGCAT
49035577 TGTACGAGCC
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
83 1 0.02
84 59 0.95
85 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (84 bp):
GTGTAAGACCACGTCTGGGACAATGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACA
TTGGCATCGTATTTGATTT
Found at i:49038416 original size:21 final size:21
Alignment explanation
Indices: 49038392--49038452 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
49038382 TAGGGATTAT
49038392 GGTTTATA-GTTTAAGGGTTGG
1 GGTTTA-AGGTTTAAGGGTTGG
*
49038413 GGTTTAAGGTTTAAGGGTTAG
1 GGTTTAAGGTTTAAGGGTTGG
*
49038434 GATTTAATGG-TTAAGGGTT
1 GGTTTAA-GGTTTAAGGGTT
49038453 TAGGATTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 33 0.92
22 2 0.06
ACGTcount: A:0.23, C:0.00, G:0.36, T:0.41
Consensus pattern (21 bp):
GGTTTAAGGTTTAAGGGTTGG
Found at i:49038473 original size:14 final size:14
Alignment explanation
Indices: 49038451--49038484 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
49038441 TGGTTAAGGG
*
49038451 TTTAGGATTTATGT
1 TTTAGGATTTATGA
*
49038465 TTTATGATTTATGA
1 TTTAGGATTTATGA
49038479 TTTAGG
1 TTTAGG
49038485 GTTAAGAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.56
Consensus pattern (14 bp):
TTTAGGATTTATGA
Found at i:49040859 original size:13 final size:13
Alignment explanation
Indices: 49040841--49040878 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
49040831 AGTTCTTTAT
49040841 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
49040854 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
49040867 TACTTTTGAGAA
1 TGCTTTTGAGAA
49040879 ATTTGAGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.26, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:49041493 original size:22 final size:21
Alignment explanation
Indices: 49041468--49041511 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
49041458 AAGCATATGA
*
49041468 AAATGATTTGGTTATATTCAAT
1 AAATGATTTGGTTA-ATACAAT
49041490 AAATGATTTGGTTAATACAAT
1 AAATGATTTGGTTAATACAAT
49041511 A
1 A
49041512 CTTATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGATTTGGTTAATACAAT
Found at i:49041547 original size:36 final size:36
Alignment explanation
Indices: 49041505--49041575 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
49041495 ATTTGGTTAA
*
49041505 TACAATACTTATATTTGATAAGCATATGAAAATGAT
1 TACAATACTTATATTTGATAAGCATAAGAAAATGAT
49041541 TACAATACTTATATTTGATAAGCATAAGAAAATGA
1 TACAATACTTATATTTGATAAGCATAAGAAAATGA
49041576 AAGTCGAGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.08, G:0.11, T:0.34
Consensus pattern (36 bp):
TACAATACTTATATTTGATAAGCATAAGAAAATGAT
Found at i:49049138 original size:43 final size:43
Alignment explanation
Indices: 49049083--49049168 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
49049073 AGTTCTTTAT
* * * *
49049083 AAGATTTCCTTGATTAAGTAAATGTATTATATCTTTTATTACC
1 AAGATTTACTTGATTAAGAAAATGCATTACATCTTTTATTACC
* *
49049126 AAGATTTACTTGATTAAGAAAATGCATTGCATTTTTTATTACC
1 AAGATTTACTTGATTAAGAAAATGCATTACATCTTTTATTACC
49049169 TTGCAATGTG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (43 bp):
AAGATTTACTTGATTAAGAAAATGCATTACATCTTTTATTACC
Found at i:49049603 original size:43 final size:43
Alignment explanation
Indices: 49049556--49049711 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 43
49049546 GAGAAGCACT
* * *
49049556 GCTAAAGGTCATGTTTTTTAGCGGCGTTTGTAATAAAAGCGCC
1 GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCC
* * * ** *
49049599 GCTAAAGAT-TTGTTCTTTAATGGCGTTTGTGATAAAAGAG-C
1 GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCC
* * *
49049640 GCTAAAGGTCAAGATCTTTAGTGGCGTTTGTGTTAAAAGCGCC
1 GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCC
* * *
49049683 GCTAAAAGTTATGATCTTTAGCGGTGTTT
1 GCTAAAGGTCATGATCTTTAGCGGCGTTT
49049712 TTCACATAAA
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 9 0.10
42 50 0.54
43 33 0.36
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.35
Consensus pattern (43 bp):
GCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGCGCC
Found at i:49055500 original size:85 final size:84
Alignment explanation
Indices: 49055384--49055585 Score: 253
Period size: 85 Copynumber: 2.4 Consensus size: 84
49055374 GTCTTTGTTT
* * * *
49055384 TTTTTTTTGCACTCAATTGTGTACTTCAACTTTTAAAATGCATAAAAAAGGC-CTTCAAACTTTT
1 TTTTTTTTACACTCAATTGTGTATTTAAACTTTTAAAATACATAAAAAAGGCTC-TCAAACTTTT
49055448 TCAAAAAAAGCAATAAAGACA
65 T-AAAAAAAGCAATAAAGACA
* *
49055469 TTTTTTTTACACTCAATTGTGTATTTAAACTTTTAAAATACATCAAAAAGGTTCTCAAACTTTTT
1 TTTTTTTTACACTCAATTGTGTATTTAAACTTTTAAAATACATAAAAAAGGCTCTCAAACTTTTT
* * *
49055534 AAAATAAGCAATTAAGTCA
66 AAAAAAAGCAATAAAGACA
** *
49055553 TTACTTTTTTTTACTCAATTGGGTATTTAAACT
1 TT--TTTTTTACACTCAATTGTGTATTTAAACT
49055586 GCCATAATGC
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
84 18 0.18
85 57 0.56
86 27 0.26
ACGTcount: A:0.37, C:0.14, G:0.08, T:0.40
Consensus pattern (84 bp):
TTTTTTTTACACTCAATTGTGTATTTAAACTTTTAAAATACATAAAAAAGGCTCTCAAACTTTTT
AAAAAAAGCAATAAAGACA
Found at i:49055864 original size:19 final size:19
Alignment explanation
Indices: 49055842--49055896 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
49055832 TTATAAAGTC
49055842 GTAAGAAAATTATAAAAAT-
1 GTAA-AAAATTATAAAAATA
*
49055861 GTAAAAAA-TATAAAATTA
1 GTAAAAAATTATAAAAATA
49055879 GTAAAAAAATTATAAAAA
1 GT-AAAAAATTATAAAAA
49055897 ACATCGTACC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 8 0.26
18 6 0.19
19 10 0.32
20 7 0.23
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.25
Consensus pattern (19 bp):
GTAAAAAATTATAAAAATA
Found at i:49056101 original size:9 final size:9
Alignment explanation
Indices: 49056087--49056232 Score: 64
Period size: 9 Copynumber: 15.4 Consensus size: 9
49056077 TTTTAATACA
49056087 TTTTATAAT
1 TTTTATAAT
*
49056096 TTTTATGAT
1 TTTTATAAT
*
49056105 TTTTATAAAA
1 TTTTAT-AAT
*
49056115 TTTTACAATT
1 TTTTATAA-T
*
49056125 TTTTATAGTT
1 TTTTATA-AT
*
49056135 TTTTATACT
1 TTTTATAAT
*
49056144 TTTTAATAAAA
1 TTTT-AT-AAT
*
49056155 ATTTA-AAT
1 TTTTATAAT
* *
49056163 ATTTTTTATTT
1 -TTTTATA-AT
*
49056174 TTTTATTAAAA
1 TTTTA-T-AAT
*
49056185 TTTAATAAT
1 TTTTATAAT
*
49056194 TTTTATAAC
1 TTTTATAAT
*
49056203 TTTTATTCAT
1 TTTTA-TAAT
49056213 TTTTAT--T
1 TTTTATAAT
49056220 TTTTATAAT
1 TTTTATAAT
49056229 TTTT
1 TTTT
49056233 TTACTACATG
Statistics
Matches: 100, Mismatches: 24, Indels: 26
0.67 0.16 0.17
Matches are distributed among these distances:
7 7 0.07
8 2 0.02
9 44 0.44
10 36 0.36
11 10 0.10
12 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (9 bp):
TTTTATAAT
Found at i:49056146 original size:28 final size:27
Alignment explanation
Indices: 49056076--49056146 Score: 63
Period size: 28 Copynumber: 2.5 Consensus size: 27
49056066 TAAAAGGGTC
* *
49056076 TTTTTAATACATTTTATAATTTTTATGA
1 TTTTTTATAC-TTTTACAATTTTTATGA
* *
49056104 TTTTTATAAAATTTTACAATTTTTTAT-A
1 TTTTT-TATACTTTTACAA-TTTTTATGA
49056132 GTTTTTTATACTTTT
1 -TTTTTTATACTTTT
49056147 TAATAAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
28 20 0.59
29 14 0.41
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (27 bp):
TTTTTTATACTTTTACAATTTTTATGA
Found at i:49056168 original size:30 final size:30
Alignment explanation
Indices: 49056134--49056206 Score: 87
Period size: 29 Copynumber: 2.4 Consensus size: 30
49056124 TTTTTATAGT
49056134 TTTTTATACTTTTTAATAAAAATTTAA-ATA
1 TTTTTATACTTTTTAATAAAAATTTAATA-A
* * *
49056164 TTTTT-TATTTTTTTATTAAAATTTAATAA
1 TTTTTATACTTTTTAATAAAAATTTAATAA
49056193 TTTTTATAACTTTT
1 TTTTTAT-ACTTTT
49056207 ATTCATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 24 0.67
30 7 0.19
31 5 0.14
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTTATACTTTTTAATAAAAATTTAATAA
Found at i:49056176 original size:39 final size:39
Alignment explanation
Indices: 49056087--49056179 Score: 104
Period size: 39 Copynumber: 2.4 Consensus size: 39
49056077 TTTTAATACA
* *
49056087 TTTTATA-ATTTTTATGATTTTTATAAAATTTTACAATT
1 TTTTATAGTTTTTTATGATTTTTATAAAAATTTACAATT
49056125 TTTTATAGTTTTTTAT-ACTTTTTAATAAAAATTTA-AATAT
1 TTTTATAGTTTTTTATGA-TTTTT-ATAAAAATTTACAAT-T
*
49056165 TTTT-TATTTTTTTAT
1 TTTTATAGTTTTTTAT
49056180 TAAAATTTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
38 8 0.17
39 25 0.52
40 15 0.31
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (39 bp):
TTTTATAGTTTTTTATGATTTTTATAAAAATTTACAATT
Found at i:49057008 original size:7 final size:7
Alignment explanation
Indices: 49056996--49057020 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
49056986 TACATATATA
49056996 TTTTTCT
1 TTTTTCT
49057003 TTTTTCT
1 TTTTTCT
49057010 TTTTTCT
1 TTTTTCT
49057017 TTTT
1 TTTT
49057021 AAAAAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTCT
Found at i:49061894 original size:52 final size:52
Alignment explanation
Indices: 49061791--49061895 Score: 133
Period size: 51 Copynumber: 2.0 Consensus size: 52
49061781 CTACAGATTA
* * * * *
49061791 TTAACTCTTCTAAATAGTGTTTTTCTCATGTAAACCTGTTCTGCTCTTATTG
1 TTAACTCTTCTAAATAGTGCTATTCTCAAGTAAACCAGTTCTACTCTTATTG
49061843 TTAACT-TTCTAAATAGTGCTATTCTCAAGTAATACCAGTTCTACTAC-TATTG
1 TTAACTCTTCTAAATAGTGCTATTCTCAAGTAA-ACCAGTTCTACT-CTTATTG
49061895 T
1 T
49061896 CAACCATAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
51 23 0.50
52 22 0.48
53 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (52 bp):
TTAACTCTTCTAAATAGTGCTATTCTCAAGTAAACCAGTTCTACTCTTATTG
Found at i:49061944 original size:51 final size:52
Alignment explanation
Indices: 49061883--49061981 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
49061873 AATACCAGTT
*
49061883 CTACTACTATTGTCAACCATAGT-ACTGATGCTTTTTCTCATGTAACACCAA
1 CTACTACTATTGTCAACCATAGTAACTGATGCCTTTTCTCATGTAACACCAA
* * * *
49061934 CTACTCCTATTGTTAACCCTAGTAACTGGTGCCTTTTCTCATGTAACA
1 CTACTACTATTGTCAACCATAGTAACTGATGCCTTTTCTCATGTAACA
49061982 GTTGTATCGT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 20 0.48
52 22 0.52
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.36
Consensus pattern (52 bp):
CTACTACTATTGTCAACCATAGTAACTGATGCCTTTTCTCATGTAACACCAA
Found at i:49074213 original size:3 final size:3
Alignment explanation
Indices: 49074187--49074267 Score: 105
Period size: 3 Copynumber: 27.3 Consensus size: 3
49074177 TTTTTTTAGT
*
49074187 TTA TT- TTA TTA GTA TTGA -TA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
49074231 GTA TTA TTA TTA TTA -TA TTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
49074268 ACCTACATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
2 5 0.07
3 60 0.87
4 4 0.06
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:49074457 original size:19 final size:19
Alignment explanation
Indices: 49074413--49074476 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
49074403 TATACACATT
49074413 TACA-TTTCATAATATTTA
1 TACATTTTCATAATATTTA
* *
49074431 TACGTTTTCCTAATATTCTA
1 TACATTTTCATAATATT-TA
* *
49074451 TA-ATTTT-TTATATGTTTA
1 TACATTTTCATA-ATATTTA
49074469 TACATTTT
1 TACATTTT
49074477 TTGTAATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
18 9 0.24
19 24 0.65
20 4 0.11
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.56
Consensus pattern (19 bp):
TACATTTTCATAATATTTA
Found at i:49078305 original size:23 final size:23
Alignment explanation
Indices: 49078279--49078328 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
49078269 GGACAACATA
* * *
49078279 TATACACCAAATTGGATAGCATT
1 TATAAACCAAATTGGACAGCAAT
49078302 TATAAACCAAATTGGACAGCAAT
1 TATAAACCAAATTGGACAGCAAT
49078325 TATA
1 TATA
49078329 TATACCCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (23 bp):
TATAAACCAAATTGGACAGCAAT
Found at i:49080556 original size:13 final size:13
Alignment explanation
Indices: 49080538--49080564 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
49080528 CACAAACAAT
49080538 AAAATTTTCACAC
1 AAAATTTTCACAC
49080551 AAAATTTTCACAC
1 AAAATTTTCACAC
49080564 A
1 A
49080565 TATTAATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:49086916 original size:23 final size:23
Alignment explanation
Indices: 49086890--49087011 Score: 163
Period size: 23 Copynumber: 5.2 Consensus size: 23
49086880 TGGACAACTC
* *
49086890 TTATACATCAAATCGGACAGCAT
1 TTATACACCAAATTGGACAGCAT
* *
49086913 TTATACACCCAATTGGACAACAT
1 TTATACACCAAATTGGACAGCAT
*
49086936 ATATATATACCAAATTGGACAGCAT
1 -T-TATACACCAAATTGGACAGCAT
*
49086961 ATATACACCAAATTGGACAGCAT
1 TTATACACCAAATTGGACAGCAT
*
49086984 TTATACACCAAATTGGATAGCAT
1 TTATACACCAAATTGGACAGCAT
49087007 TTATA
1 TTATA
49087012 TATACCCAAT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
23 66 0.77
24 1 0.01
25 19 0.22
ACGTcount: A:0.41, C:0.20, G:0.11, T:0.28
Consensus pattern (23 bp):
TTATACACCAAATTGGACAGCAT
Found at i:49086956 original size:48 final size:46
Alignment explanation
Indices: 49086879--49087011 Score: 169
Period size: 48 Copynumber: 2.8 Consensus size: 46
49086869 TCTACCCTGT
* * *
49086879 TTGGACAAC-TCTTATACATCAAATCGGACAGCATTTATACACCCAA
1 TTGGACAACAT-TTATACACCAAATTGGACAGCATTTATACACCAAA
* *
49086925 TTGGACAACATATATATATACCAAATTGGACAGCATATATACACCAAA
1 TTGGACAACAT-T-TATACACCAAATTGGACAGCATTTATACACCAAA
* *
49086973 TTGGACAGCATTTATACACCAAATTGGATAGCATTTATA
1 TTGGACAACATTTATACACCAAATTGGACAGCATTTATA
49087012 TATACCCAAT
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
46 33 0.44
47 3 0.04
48 39 0.52
ACGTcount: A:0.40, C:0.20, G:0.12, T:0.28
Consensus pattern (46 bp):
TTGGACAACATTTATACACCAAATTGGACAGCATTTATACACCAAA
Found at i:49089235 original size:13 final size:13
Alignment explanation
Indices: 49089217--49089241 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49089207 ACAAACAATA
49089217 AAATTTTCACACG
1 AAATTTTCACACG
49089230 AAATTTTCACAC
1 AAATTTTCACAC
49089242 ATATTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:49089532 original size:11 final size:10
Alignment explanation
Indices: 49089509--49089563 Score: 51
Period size: 9 Copynumber: 5.6 Consensus size: 10
49089499 GTGAAAATTA
49089509 TTTTATATAT
1 TTTTATATAT
49089519 TTTTA-ATAT
1 TTTTATATAT
*
49089528 TTTT-TACAT
1 TTTTATATAT
* *
49089537 TTTAAGTAAAT
1 TTTTA-TATAT
*
49089548 TTTCATATAT
1 TTTTATATAT
49089558 TTTTAT
1 TTTTAT
49089564 GATTTTTAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
9 14 0.39
10 14 0.39
11 8 0.22
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTATATAT
Found at i:49096823 original size:9 final size:9
Alignment explanation
Indices: 49096809--49096845 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
49096799 TATAGTTTGA
49096809 TATTCGAAT
1 TATTCGAAT
49096818 TATTCGAAT
1 TATTCGAAT
*
49096827 TATTCGAGT
1 TATTCGAAT
49096836 TATTCGAAT
1 TATTCGAAT
49096845 T
1 T
49096846 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:49096917 original size:9 final size:9
Alignment explanation
Indices: 49096900--49096930 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
49096890 TTGAGTTGAT
49096900 TCGAATAAC
1 TCGAATAAC
*
49096909 TCGATTAAC
1 TCGAATAAC
49096918 TCGAATAAC
1 TCGAATAAC
49096927 TCGA
1 TCGA
49096931 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:49104028 original size:9 final size:9
Alignment explanation
Indices: 49104014--49104089 Score: 107
Period size: 9 Copynumber: 8.4 Consensus size: 9
49104004 TTTGGTTAAA
49104014 AATTAACCG
1 AATTAACCG
*
49104023 AATTAACCA
1 AATTAACCG
49104032 AATTAACCG
1 AATTAACCG
*
49104041 AATTACCCG
1 AATTAACCG
*
49104050 AATTAACTG
1 AATTAACCG
49104059 AATTAACCG
1 AATTAACCG
*
49104068 AATTACCCG
1 AATTAACCG
*
49104077 AATTAACCT
1 AATTAACCG
49104086 AATT
1 AATT
49104090 GAATCATACA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:49109427 original size:12 final size:12
Alignment explanation
Indices: 49109410--49109435 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
49109400 TTCTTTTACC
49109410 ATATTTATTATT
1 ATATTTATTATT
49109422 ATATTTATTATT
1 ATATTTATTATT
49109434 AT
1 AT
49109436 TACTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATATTTATTATT
Found at i:49109658 original size:12 final size:12
Alignment explanation
Indices: 49109643--49109671 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
49109633 GTTATCATTG
49109643 TTATTATTTATT
1 TTATTATTTATT
49109655 TTATTATTTATT
1 TTATTATTTATT
49109667 TTATT
1 TTATT
49109672 TTTTCTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTATTATTTATT
Found at i:49110816 original size:47 final size:48
Alignment explanation
Indices: 49110707--49110817 Score: 161
Period size: 48 Copynumber: 2.3 Consensus size: 48
49110697 TGGAAGAATA
*
49110707 TGGCAGTTTATCTACAAAAGTAGTGGCTTGCCCATAAATTTGATTATG
1 TGGCAGTTTATCTGCAAAAGTAGTGGCTTGCCCATAAATTTGATTATG
* * * * *
49110755 TGGCAGTATGTCTGCAAAAGTGGTGGCTTGTCCA-CAATTTGATTATG
1 TGGCAGTTTATCTGCAAAAGTAGTGGCTTGCCCATAAATTTGATTATG
49110802 TGGCAGTTTATCTGCA
1 TGGCAGTTTATCTGCA
49110818 TTACCGTGAC
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 26 0.47
48 29 0.53
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.35
Consensus pattern (48 bp):
TGGCAGTTTATCTGCAAAAGTAGTGGCTTGCCCATAAATTTGATTATG
Found at i:49114058 original size:102 final size:101
Alignment explanation
Indices: 49113875--49114059 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 101
49113865 AAAGTGATGG
* * *
49113875 TCACGTGTGTAGTACTATGTGCAGGCTACAACGTGTACCGGAATGATGGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACAACATGTACCAGAATGATGGGTCACATGTGTAGTAC
49113940 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
** * *
49113976 TCACGTGTGTAGTACTATGTTTAGGCTACTACATGTATCAG-ATGGTAAT-GGTCACATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCTACAACATGTACCAGAAT-G--ATGGGTCACATGTGTAG
49114039 TACTATGTGCAGGCTACTATG
63 TACTATGTGCAGGCTACTATG
49114060 TAAACTGAAC
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
100 2 0.03
101 36 0.49
102 34 0.46
103 2 0.03
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACAACATGTACCAGAATGATGGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:49119867 original size:2 final size:2
Alignment explanation
Indices: 49119862--49119892 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
49119852 ATATATATAT
*
49119862 AG AG AG AG AG AG AG AG AG CG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
49119893 ATTGTTTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:49127330 original size:13 final size:14
Alignment explanation
Indices: 49127312--49127349 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
49127302 CAAGTTGTTG
49127312 ATTTTACT-TAGTA
1 ATTTTACTGTAGTA
*
49127325 ATTTTATTGTAGTA
1 ATTTTACTGTAGTA
*
49127339 ATTTTATTGTA
1 ATTTTACTGTA
49127350 TTTGCGTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 7 0.30
14 16 0.70
ACGTcount: A:0.29, C:0.03, G:0.11, T:0.58
Consensus pattern (14 bp):
ATTTTACTGTAGTA
Found at i:49127339 original size:14 final size:14
Alignment explanation
Indices: 49127320--49127349 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
49127310 TGATTTTACT
49127320 TAGTAATTTTATTG
1 TAGTAATTTTATTG
49127334 TAGTAATTTTATTG
1 TAGTAATTTTATTG
49127348 TA
1 TA
49127350 TTTGCGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (14 bp):
TAGTAATTTTATTG
Found at i:49128064 original size:16 final size:18
Alignment explanation
Indices: 49128027--49128066 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
49128017 ATAAAGATGC
49128027 TTTATTTAAGTAAATTATA
1 TTTATTTAAGTAAA-TATA
49128046 TTTATTTAA-TAAA-ATA
1 TTTATTTAAGTAAATATA
49128062 TTTAT
1 TTTAT
49128067 AATTTAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
18 4 0.19
19 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTATTTAAGTAAATATA
Found at i:49128652 original size:1 final size:1
Alignment explanation
Indices: 49128646--49128679 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
49128636 TGTAATTCAC
* *
49128646 AAAAAAAAAAAAAAAAACAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
49128680 TTCATGAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:49128667 original size:18 final size:19
Alignment explanation
Indices: 49128644--49128679 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
49128634 CTTGTAATTC
49128644 ACAAAAA-AAAAAAAAAAA
1 ACAAAAACAAAAAAAAAAA
49128662 ACAAAAACAAAAAAAAAA
1 ACAAAAACAAAAAAAAAA
49128680 TTCATGAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (19 bp):
ACAAAAACAAAAAAAAAAA
Found at i:49132999 original size:14 final size:15
Alignment explanation
Indices: 49132980--49133013 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
49132970 GACACGGACG
*
49132980 AATTTCTGTTAAAA-
1 AATTTCTCTTAAAAC
49132994 AATTTCTCTTAAAAC
1 AATTTCTCTTAAAAC
49133009 AATTT
1 AATTT
49133014 TATATTAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.44
Consensus pattern (15 bp):
AATTTCTCTTAAAAC
Found at i:49133680 original size:14 final size:14
Alignment explanation
Indices: 49133658--49133687 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
49133648 GGTAAAAAAG
49133658 CCTTAAACCCTGAA
1 CCTTAAACCCTGAA
*
49133672 CCTTGAACCCTGAA
1 CCTTAAACCCTGAA
49133686 CC
1 CC
49133688 CTTTATTAGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.40, G:0.10, T:0.20
Consensus pattern (14 bp):
CCTTAAACCCTGAA
Found at i:49135192 original size:21 final size:21
Alignment explanation
Indices: 49135168--49135207 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
49135158 AGAAAAAGAG
49135168 AAATACAAAAAAG-AATAGATC
1 AAAT-CAAAAAAGAAATAGATC
*
49135189 AAATCAAGAAAGAAATAGA
1 AAATCAAAAAAGAAATAGA
49135208 ACCAACAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.68, C:0.07, G:0.12, T:0.12
Consensus pattern (21 bp):
AAATCAAAAAAGAAATAGATC
Found at i:49138099 original size:34 final size:34
Alignment explanation
Indices: 49138022--49138221 Score: 220
Period size: 35 Copynumber: 5.8 Consensus size: 34
49138012 AAATGATACA
*
49138022 TGAACAGGAGAGATTCCCTGCAACAACATAATGCG
1 TGAACAGGAGAGATTCCCTGCAAGAA-ATAATGCG
* * ** *
49138057 TGAACAGGAGAGATTCCTTGCAGGAAATGGTGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATAATGCG
*
49138091 TGAACAGGAGAGATTCCCTGCAATAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAA-GAAATAATGCG
* * * *
49138126 TGACCAAGAGAGATTCCCTGCAAGAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAAGAAATAATGCG
* * * *
49138160 TGAACATGAGAGATTTCCTGCAACAAAATAATGCT
1 TGAACAGGAGAGATTCCCTGCAA-GAAATAATGCG
* *
49138195 TGAACAGGAAATATTCCCTGCAAGAAA
1 TGAACAGGAGAGATTCCCTGCAAGAAA
49138222 AGACAAGTGA
Statistics
Matches: 134, Mismatches: 29, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
34 57 0.43
35 77 0.57
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (34 bp):
TGAACAGGAGAGATTCCCTGCAAGAAATAATGCG
Found at i:49138232 original size:69 final size:69
Alignment explanation
Indices: 49138022--49138221 Score: 292
Period size: 69 Copynumber: 2.9 Consensus size: 69
49138012 AAATGATACA
* * * *
49138022 TGAACAGGAGAGATTCCCTGCAACAACATAATGCGTGAACAGGAGAGATTCCTTGCAGGAAATGG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
49138087 TGTG
66 TGTG
* * *
49138091 TGAACAGGAGAGATTCCCTGCAATAAAATAATGCGTGACCAAGAGAGATTCCCTGCAAGAAATGA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
49138156 TGTG
66 TGTG
* * * * *
49138160 TGAACATGAGAGATTTCCTGCAACAAAATAATGCTTGAACAGGAAATATTCCCTGCAAGAAA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAA
49138222 AGACAAGTGA
Statistics
Matches: 116, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 116 1.00
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (69 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGA
TGTG
Found at i:49138497 original size:13 final size:13
Alignment explanation
Indices: 49138479--49138517 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
49138469 AGTTTTCAAA
49138479 TTTTCAAATTAAG
1 TTTTCAAATTAAG
49138492 TTTTCAAAACTTAAG
1 TTTTC-AAA-TTAAG
*
49138507 CTTTCAAATTA
1 TTTTCAAATTA
49138518 CAAATATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 8 0.35
14 6 0.26
15 9 0.39
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.44
Consensus pattern (13 bp):
TTTTCAAATTAAG
Found at i:49145969 original size:15 final size:15
Alignment explanation
Indices: 49145949--49145980 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
49145939 CATTTCACTA
*
49145949 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
49145964 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
49145979 TT
1 TT
49145981 TTGTATGCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:49147182 original size:20 final size:21
Alignment explanation
Indices: 49147157--49147203 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
49147147 AAATTAATTA
49147157 AAATTA-TATGATATTTTTGG
1 AAATTACTATGATATTTTTGG
49147177 AAATTACTATGATATTTTTGG
1 AAATTACTATGATATTTTTGG
49147198 AAATTA
1 AAATTA
49147204 ATTTTTAAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.38, C:0.02, G:0.13, T:0.47
Consensus pattern (21 bp):
AAATTACTATGATATTTTTGG
Found at i:49157891 original size:37 final size:37
Alignment explanation
Indices: 49157830--49157977 Score: 120
Period size: 37 Copynumber: 3.9 Consensus size: 37
49157820 CGAGCCATAC
* * *
49157830 CTACTGGTTCTACTGAAAGTAGCTCAAACAAGCAAATT
1 CTACT-GTTATACTGAATGAAGCTCAAACAAGCAAATT
* **
49157868 -TCACTGTTATACTGAGTGAAGCTCAAATGAGCAAATT
1 CT-ACTGTTATACTGAATGAAGCTCAAACAAGCAAATT
* * * *
49157905 CTACTGTTATACTGAATGGAGCTCAAACGAGTAAAAT
1 CTACTGTTATACTGAATGAAGCTCAAACAAGCAAATT
* * * *
49157942 CTA-TAGATATACTGAAATAAAGCTCAATCAAACAAA
1 CTACT-GTTATACTG-AATGAAGCTCAAACAAGCAAA
49157978 GTCCATTGAG
Statistics
Matches: 88, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
36 1 0.01
37 68 0.77
38 19 0.22
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.26
Consensus pattern (37 bp):
CTACTGTTATACTGAATGAAGCTCAAACAAGCAAATT
Found at i:49160046 original size:28 final size:26
Alignment explanation
Indices: 49160002--49160053 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
49159992 ATATTATTAA
49160002 TATAATATATAAATGTTATAATAAGG
1 TATAATATATAAATGTTATAATAAGG
*
49160028 TATAATATATTATTATGTTATAATAA
1 TATAATATA-TA-AATGTTATAATAA
49160054 ACATTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 9 0.39
27 2 0.09
28 12 0.52
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (26 bp):
TATAATATATAAATGTTATAATAAGG
Found at i:49164739 original size:18 final size:18
Alignment explanation
Indices: 49164718--49164752 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49164708 ATATTTAAAT
*
49164718 AAAATTATATAAAATTTA
1 AAAATAATATAAAATTTA
*
49164736 AAAATAATATAACATTT
1 AAAATAATATAAAATTT
49164753 TAATATTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATAATATAAAATTTA
Found at i:49164817 original size:18 final size:18
Alignment explanation
Indices: 49164794--49164830 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
49164784 CAAAAATATT
49164794 TTTTTACAATTTTTATAA
1 TTTTTACAATTTTTATAA
*
49164812 TTTTTACAATTTTTGTAA
1 TTTTTACAATTTTTATAA
49164830 T
1 T
49164831 AAGATTATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTTTACAATTTTTATAA
Found at i:49164824 original size:8 final size:9
Alignment explanation
Indices: 49164794--49164825 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
49164784 CAAAAATATT
49164794 TTTTTACAA
1 TTTTTACAA
*
49164803 TTTTTATAA
1 TTTTTACAA
49164812 TTTTTACAA
1 TTTTTACAA
49164821 TTTTT
1 TTTTT
49164826 GTAATAAGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTTTACAA
Found at i:49167533 original size:25 final size:25
Alignment explanation
Indices: 49167502--49167550 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
49167492 GGTACCAGAC
49167502 AAAATATGGTGTATCAGCTGGTACA
1 AAAATATGGTGTATCAGCTGGTACA
49167527 AAAATATGGTGTATCAGCTGGTAC
1 AAAATATGGTGTATCAGCTGGTAC
49167551 CAATGTGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (25 bp):
AAAATATGGTGTATCAGCTGGTACA
Found at i:49169888 original size:40 final size:40
Alignment explanation
Indices: 49169825--49169911 Score: 106
Period size: 40 Copynumber: 2.2 Consensus size: 40
49169815 AATTATGGAA
* * *
49169825 TACTGAATATTGTTTTGAGTACTG-AGTTAAATTGTGAAGT
1 TACTGAATATTGTTATGAGTACTGCA-TTAAACTGTGAAAT
*
49169865 TACTGAATATTGTTATGTA-TACTGCATTGAACTGTGAAAT
1 TACTGAATATTGTTATG-AGTACTGCATTAAACTGTGAAAT
49169905 TACTGAA
1 TACTGAA
49169912 GTAATGAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
40 39 0.95
41 2 0.05
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (40 bp):
TACTGAATATTGTTATGAGTACTGCATTAAACTGTGAAAT
Found at i:49170161 original size:39 final size:39
Alignment explanation
Indices: 49170116--49170252 Score: 193
Period size: 39 Copynumber: 3.4 Consensus size: 39
49170106 CCGACACTGT
49170116 TACTGTTACTGTTACCAATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACTGTTACCAATTCGGCACTTTGTGTGTCGAA
*
49170155 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACTGTTACCAATTCGGCACTTTGTGTGTCGAA
* * *
49170194 CACTGTTACCGTACTGTTACAAATTCGGCACTTTGTGTGTTGAA
1 TACTG-T----TACTGTTACCAATTCGGCACTTTGTGTGTCGAA
49170238 TACTGTTACTGTTAC
1 TACTGTTACTGTTAC
49170253 TTTTACTGCT
Statistics
Matches: 87, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
39 51 0.59
40 1 0.01
43 1 0.01
44 34 0.39
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (39 bp):
TACTGTTACTGTTACCAATTCGGCACTTTGTGTGTCGAA
Found at i:49170209 original size:83 final size:82
Alignment explanation
Indices: 49170094--49170252 Score: 257
Period size: 83 Copynumber: 1.9 Consensus size: 82
49170084 TTACTGATCA
* *
49170094 GGCACTTGTGTGCCGACACTGTTACTGTTACTGTTACCAATTCGGCACTTTGTGTGTCGAATACT
1 GGCACTTGTGTGCCGACACTGTTACCGTTACTGTTACAAATTCGGCACTTTGTGTGTCGAATACT
49170159 GTTACTGTTACCGATTC
66 GTTACTGTTACCGATTC
* *
49170176 GGCACTTTGTGTGTCGAACACTGTTACCG-TACTGTTACAAATTCGGCACTTTGTGTGTTGAATA
1 GGCAC-TTGTGTGCCG-ACACTGTTACCGTTACTGTTACAAATTCGGCACTTTGTGTGTCGAATA
49170240 CTGTTACTGTTAC
64 CTGTTACTGTTAC
49170253 TTTTACTGCT
Statistics
Matches: 71, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
82 5 0.07
83 55 0.77
84 11 0.15
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.37
Consensus pattern (82 bp):
GGCACTTGTGTGCCGACACTGTTACCGTTACTGTTACAAATTCGGCACTTTGTGTGTCGAATACT
GTTACTGTTACCGATTC
Found at i:49170220 original size:44 final size:43
Alignment explanation
Indices: 49170094--49170246 Score: 183
Period size: 44 Copynumber: 3.6 Consensus size: 43
49170084 TTACTGATCA
*
49170094 GGCAC-TTGTGTGCCG-ACACTGTTACTGTTACTGTTACCAATTC
1 GGCACTTTGTGTGTCGAACACTGTTAC-G-TACTGTTACCAATTC
* *
49170137 GGCACTTTGTGTGTCGAATACTG-T---TACTGTTACCGATTC
1 GGCACTTTGTGTGTCGAACACTGTTACGTACTGTTACCAATTC
*
49170176 GGCACTTTGTGTGTCGAACACTGTTACCGTACTGTTACAAATTC
1 GGCACTTTGTGTGTCGAACACTGTTA-CGTACTGTTACCAATTC
* *
49170220 GGCACTTTGTGTGTTGAATACTGTTAC
1 GGCACTTTGTGTGTCGAACACTGTTAC
49170247 TGTTACTTTT
Statistics
Matches: 95, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
39 36 0.38
40 1 0.01
43 6 0.06
44 47 0.49
45 5 0.05
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (43 bp):
GGCACTTTGTGTGTCGAACACTGTTACGTACTGTTACCAATTC
Found at i:49179586 original size:18 final size:18
Alignment explanation
Indices: 49179552--49179586 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
49179542 ATATATGTTA
**
49179552 AAATAATAAAAGTAAAAC
1 AAATAATAAAACAAAAAC
49179570 AAATAATAAAACAAAAA
1 AAATAATAAAACAAAAA
49179587 GACAACCATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (18 bp):
AAATAATAAAACAAAAAC
Found at i:49181024 original size:9 final size:9
Alignment explanation
Indices: 49181010--49181058 Score: 80
Period size: 9 Copynumber: 5.4 Consensus size: 9
49181000 GTAGTGATTC
49181010 AATTCGGTT
1 AATTCGGTT
49181019 AATTCGGTT
1 AATTCGGTT
*
49181028 AATTCGGGT
1 AATTCGGTT
*
49181037 AATCCGGTT
1 AATTCGGTT
49181046 AATTCGGTT
1 AATTCGGTT
49181055 AATT
1 AATT
49181059 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:49182862 original size:20 final size:20
Alignment explanation
Indices: 49182834--49182885 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
49182824 GATGTGTAAT
*
49182834 AGAGACACCAAAGTGCAGAC
1 AGAGACACCAAAGTGCAAAC
* *
49182854 AGAGGCACCGAAGTGCAAAC
1 AGAGACACCAAAGTGCAAAC
49182874 AGAGACACCAAA
1 AGAGACACCAAA
49182886 ATACAATAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.46, C:0.25, G:0.25, T:0.04
Consensus pattern (20 bp):
AGAGACACCAAAGTGCAAAC
Found at i:49189692 original size:22 final size:21
Alignment explanation
Indices: 49189657--49189714 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
49189647 AAAGGGTATC
* * *
49189657 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
49189678 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
49189701 TGCATATCATATCT
1 TACAAATCATATCT
49189715 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:49189737 original size:17 final size:17
Alignment explanation
Indices: 49189686--49189729 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 17
49189676 ATTACAAAAT
49189686 CATATCTTCTAAGATTG
1 CATATCTTCTAAGATTG
49189703 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTG
49189722 CATATCTT
1 CATATCTT
49189730 TAAAGATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.28
18 2 0.08
19 16 0.64
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (17 bp):
CATATCTTCTAAGATTG
Found at i:49191730 original size:24 final size:24
Alignment explanation
Indices: 49191689--49191734 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
49191679 ATTGTAAAGT
*
49191689 ATCTTAGAATGACGAAATAATAGG
1 ATCTTAGAATGACCAAATAATAGG
**
49191713 ATCTTAGAATTTCCAAATAATA
1 ATCTTAGAATGACCAAATAATA
49191735 AAATCTTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (24 bp):
ATCTTAGAATGACCAAATAATAGG
Found at i:49191740 original size:24 final size:24
Alignment explanation
Indices: 49191689--49191741 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
49191679 ATTGTAAAGT
* **
49191689 ATCTTAGAATGACGAAATAATAGG
1 ATCTTAGAATGACCAAATAATAAA
**
49191713 ATCTTAGAATTTCCAAATAATAAA
1 ATCTTAGAATGACCAAATAATAAA
49191737 ATCTT
1 ATCTT
49191742 GTAAATTACC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32
Consensus pattern (24 bp):
ATCTTAGAATGACCAAATAATAAA
Found at i:49191792 original size:15 final size:15
Alignment explanation
Indices: 49191768--49191797 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49191758 TTTCCTTCTT
*
49191768 ACTTTTCTTTTGTAA
1 ACTTTCCTTTTGTAA
49191783 ACTTTCCTTTTGTAA
1 ACTTTCCTTTTGTAA
49191798 TAAAGAGTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.57
Consensus pattern (15 bp):
ACTTTCCTTTTGTAA
Found at i:49201027 original size:32 final size:32
Alignment explanation
Indices: 49200984--49201060 Score: 109
Period size: 32 Copynumber: 2.4 Consensus size: 32
49200974 CAAAATAAAT
*
49200984 TATGAAAAGTTACGAATGTGAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCGAAGAGACTTGAA
* **
49201016 TATGAAGAGTTAATAATGCGAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCGAAGAGACTTGAA
*
49201048 GATGAAAAGTTAC
1 TATGAAAAGTTAC
49201061 ACACATGCAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCGAAGAGACTTGAA
Found at i:49205523 original size:32 final size:32
Alignment explanation
Indices: 49205480--49205557 Score: 111
Period size: 32 Copynumber: 2.4 Consensus size: 32
49205470 CAAAATAAAT
*
49205480 TATGAAAAGTTACGAATGTGAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCGAAGAGACTTGAA
* **
49205512 TATGAAGAGTTAATAATGCGAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCGAAGAGACTTGAA
*
49205544 GATGAAAAGTTACG
1 TATGAAAAGTTACG
49205558 CACATGCATG
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.44, C:0.06, G:0.26, T:0.24
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCGAAGAGACTTGAA
Found at i:49206151 original size:5 final size:5
Alignment explanation
Indices: 49206143--49206178 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
49206133 GAGATGAAAT
*
49206143 TCGAA TCGAA TCGAA TCGAA TCAAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
49206179 ATATTTGTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.22
Consensus pattern (5 bp):
TCGAA
Found at i:49206709 original size:20 final size:19
Alignment explanation
Indices: 49206680--49206732 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 19
49206670 AAATGGTGAG
49206680 AAATAAAAGTTTAGGGGGA
1 AAATAAAAGTTTAGGGGGA
*
49206699 AAATAAAAAGTTT-TGGGG-
1 AAAT-AAAAGTTTAGGGGGA
49206717 -AATAAAAGTTTGAGGG
1 AAATAAAAGTTT-AGGG
49206733 AAAGTTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
16 8 0.28
17 3 0.10
18 2 0.07
19 8 0.28
20 8 0.28
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.25
Consensus pattern (19 bp):
AAATAAAAGTTTAGGGGGA
Found at i:49207101 original size:9 final size:9
Alignment explanation
Indices: 49207087--49207123 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
49207077 TATTGTTTGA
49207087 TATTCGAAT
1 TATTCGAAT
49207096 TATTCGAAT
1 TATTCGAAT
* *
49207105 TATTAGAGT
1 TATTCGAAT
49207114 TATTCGAAT
1 TATTCGAAT
49207123 T
1 T
49207124 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:49207789 original size:22 final size:22
Alignment explanation
Indices: 49207763--49207804 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
49207753 ATTGCACCAT
49207763 CAATAATGAAACAAAATTATAC
1 CAATAATGAAACAAAATTATAC
* * *
49207785 CAATATTTAAAGAAAATTAT
1 CAATAATGAAACAAAATTAT
49207805 TCTATAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.29
Consensus pattern (22 bp):
CAATAATGAAACAAAATTATAC
Found at i:49213582 original size:61 final size:60
Alignment explanation
Indices: 49213479--49213673 Score: 179
Period size: 61 Copynumber: 3.2 Consensus size: 60
49213469 ATCAATTTAA
*
49213479 TATTAAATTAATATAATACTTA--T-CAAGATAAATATTAGATTAAATTAAATATTAAATC
1 TATTAAATTAATATAATA-TTATCTACAAGATAAATATTAAATTAAATTAAATATTAAATC
*
49213537 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAAAATTAAA-A-T-AATC
1 TATTAAATTAATATAATA-TTATCTACAAGATAAATATTAAATT-AAATTAAATATTAAATC
* ** * * * *
49213596 GCATTAATATTAA-ATTAATAAAATACTATCAAGATAAGTATCAAATTAAATTTATTATTAAATC
1 -TATTAA-ATTAATA-TAATATTAT-CTA-CAAGATAAATATTAAATTAAATTAAATATTAAATC
*
49213660 TATTAAAATAATAT
1 TATTAAATTAATAT
49213674 TATTTTTGTA
Statistics
Matches: 111, Mismatches: 13, Indels: 22
0.76 0.09 0.15
Matches are distributed among these distances:
58 20 0.18
59 4 0.04
60 10 0.09
61 36 0.32
62 30 0.27
63 7 0.06
64 4 0.04
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (60 bp):
TATTAAATTAATATAATATTATCTACAAGATAAATATTAAATTAAATTAAATATTAAATC
Found at i:49214875 original size:26 final size:26
Alignment explanation
Indices: 49214839--49214904 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
49214829 AAATTCCCCG
* *
49214839 TGTTTACTGTCCCGATGGACTACCCA
1 TGTTTACTGTCCCAATGAACTACCCA
*
49214865 TGTTTATTGTCCCAATGAACTACCC-
1 TGTTTACTGTCCCAATGAACTACCCA
*
49214890 CGTCTTACTGTCCCA
1 TGT-TTACTGTCCCA
49214905 GCGGACTCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 2 0.06
26 32 0.94
ACGTcount: A:0.20, C:0.32, G:0.15, T:0.33
Consensus pattern (26 bp):
TGTTTACTGTCCCAATGAACTACCCA
Found at i:49216322 original size:41 final size:41
Alignment explanation
Indices: 49216277--49216412 Score: 200
Period size: 41 Copynumber: 3.3 Consensus size: 41
49216267 CAGCACATAA
* * *
49216277 CCTGCTAAACTTATAGCATGATTCAAATCACCGGCACGTAG
1 CCTGCTAGACTTATAACCTGATTCAAATCACCGGCACGTAG
**
49216318 CCTGCTAGGTTTATAACCTGATTCAAATCACCGGCACGTAG
1 CCTGCTAGACTTATAACCTGATTCAAATCACCGGCACGTAG
** *
49216359 CCTGCTAGGTTTATAACCTGATTCAGATCACCGGCACGTAG
1 CCTGCTAGACTTATAACCTGATTCAAATCACCGGCACGTAG
49216400 CCTGCTAGACTTA
1 CCTGCTAGACTTA
49216413 AAGTCTGAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 87 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (41 bp):
CCTGCTAGACTTATAACCTGATTCAAATCACCGGCACGTAG
Found at i:49216759 original size:41 final size:41
Alignment explanation
Indices: 49216714--49216805 Score: 175
Period size: 41 Copynumber: 2.2 Consensus size: 41
49216704 TATATACATA
49216714 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGT
1 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGT
*
49216755 AGCCTGCTAGGTTTATAACCTGATTCAGATCACCGGCACGT
1 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGT
49216796 AGCCTGCTAG
1 AGCCTGCTAG
49216806 ACTTAAAGTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGT
Found at i:49217052 original size:398 final size:398
Alignment explanation
Indices: 49216316--49217491 Score: 2307
Period size: 398 Copynumber: 3.0 Consensus size: 398
49216306 ACCGGCACGT
* *
49216316 AGCCTGCTAGGTTTATAACCTGATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACCTGAT
1 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGTAGCCTGCTAGGTTTATAACCTGAT
49216381 TCAGATCACCGGCACGTAGCCTGCTAGACTTAAAGTCTGAAAAATTCACCGACATTAAGCCTGCT
66 TCAGATCACCGGCACGTAGCCTGCTAGACTTAAAGTCTGAAAAATTCACCGACATTAAGCCTGCT
49216446 AGGCGTTTAGCCTGAAAATCTCAATTTCACAGATACCAGAATGATTTCTCGTATATTTTTTTAAT
131 AGGCGTTTAGCCTGAAAATCTCAATTTCACAGATACCAGAATGATTTCTCGTATATTTTTTTAAT
*
49216511 AGCAACACACGTTCATAACATTTATATATAATTCACAATCTCAACTCTATCCCAAGAAAATTTGT
196 AGCAACACACGTTCATAACATTTATATATAATTCACAATCTCAATTCTATCCCAAGAAAATTTGT
49216576 AGTCCATGTTCAAATCATACAAGTATTTAAAATTTATACTTTTAATTCAATGCAAATCTTAAACA
261 AGTCCATGTTCAAATCATACAAGTATTTAAAATTTATACTTTTAATTCAATGCAAATCTTAAACA
49216641 TATATATACATATACATTCAACCATGTATGTCAATATGTAATTCCATACTTAATTCAAACATATA
326 TATATATACATATACATTCAACCATGTATGTCAATATGTAATTCCATACTTAATTCAAACATATA
49216706 TATACATA
391 TATACATA
49216714 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGTAGCCTGCTAGGTTTATAACCTGAT
1 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGTAGCCTGCTAGGTTTATAACCTGAT
49216779 TCAGATCACCGGCACGTAGCCTGCTAGACTTAAAGTCTGAAAAATTCACCGACATTAAGCCTGCT
66 TCAGATCACCGGCACGTAGCCTGCTAGACTTAAAGTCTGAAAAATTCACCGACATTAAGCCTGCT
49216844 AGGCGTTTAGCCTGAAAATCTCAATTTCACAGATACCAGAATGATTTCTCGTATATTTTTTTAAT
131 AGGCGTTTAGCCTGAAAATCTCAATTTCACAGATACCAGAATGATTTCTCGTATATTTTTTTAAT
49216909 AGCAACACACGTTCATAACATTTATATATAATTCACAATCTCAATTCTATCCCAAGAAAATTTGT
196 AGCAACACACGTTCATAACATTTATATATAATTCACAATCTCAATTCTATCCCAAGAAAATTTGT
*
49216974 AGTCCATGTTCAAATTATACAAGTATTTAAAATTTATACTTTTAATTCAATGCAAATCTTAAACA
261 AGTCCATGTTCAAATCATACAAGTATTTAAAATTTATACTTTTAATTCAATGCAAATCTTAAACA
49217039 TATATATACATATACATTCAACCATGTATGTCAATATGTAATTCCATACTTAATTCAAACATATA
326 TATATATACATATACATTCAACCATGTATGTCAATATGTAATTCCATACTTAATTCAAACATATA
49217104 TATACATA
391 TATACATA
49217112 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGTAGCCTGCTAGGTTTATAACCTGAT
1 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGTAGCCTGCTAGGTTTATAACCTGAT
49217177 TCAGATCACCGGCACGTAGCCTGCTAGACTTAAAGTCTGAAAAATTCACCGACATTAAGCCTGCT
66 TCAGATCACCGGCACGTAGCCTGCTAGACTTAAAGTCTGAAAAATTCACCGACATTAAGCCTGCT
*
49217242 AGGCGTTTAGCCTGAAAATCTCAATTTCACAGATACCAGAATAATTTCTCGTATATTTTTTTAAT
131 AGGCGTTTAGCCTGAAAATCTCAATTTCACAGATACCAGAATGATTTCTCGTATATTTTTTTAAT
49217307 AGCAACACACGTTCATAACATTTATATATAATTCACAATCTCAATTCTATCCCAAGAAAATTTGT
196 AGCAACACACGTTCATAACATTTATATATAATTCACAATCTCAATTCTATCCCAAGAAAATTTGT
49217372 AGTCCATGTTCAAATCATACAAGTATTTAAAATTTATACTTTTAATTCAATGCAAATCTTAAACA
261 AGTCCATGTTCAAATCATACAAGTATTTAAAATTTATACTTTTAATTCAATGCAAATCTTAAACA
49217437 TATATATACATATACATTCAACCATGTATGTCAATATGTAATTCCATACTTAATT
326 TATATATACATATACATTCAACCATGTATGTCAATATGTAATTCCATACTTAATT
49217492 TCAATACAAG
Statistics
Matches: 772, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
398 772 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (398 bp):
AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGTAGCCTGCTAGGTTTATAACCTGAT
TCAGATCACCGGCACGTAGCCTGCTAGACTTAAAGTCTGAAAAATTCACCGACATTAAGCCTGCT
AGGCGTTTAGCCTGAAAATCTCAATTTCACAGATACCAGAATGATTTCTCGTATATTTTTTTAAT
AGCAACACACGTTCATAACATTTATATATAATTCACAATCTCAATTCTATCCCAAGAAAATTTGT
AGTCCATGTTCAAATCATACAAGTATTTAAAATTTATACTTTTAATTCAATGCAAATCTTAAACA
TATATATACATATACATTCAACCATGTATGTCAATATGTAATTCCATACTTAATTCAAACATATA
TATACATA
Found at i:49217157 original size:41 final size:41
Alignment explanation
Indices: 49217112--49217203 Score: 175
Period size: 41 Copynumber: 2.2 Consensus size: 41
49217102 TATATACATA
49217112 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGT
1 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGT
*
49217153 AGCCTGCTAGGTTTATAACCTGATTCAGATCACCGGCACGT
1 AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGT
49217194 AGCCTGCTAG
1 AGCCTGCTAG
49217204 ACTTAAAGTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGGTTTATAACCTGATTCAGATCAACGGCACGT
Found at i:49217891 original size:17 final size:16
Alignment explanation
Indices: 49217856--49217897 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
49217846 GAGTTTATAC
49217856 ATATATATACCAACAT
1 ATATATATACCAACAT
* *
49217872 ATATATATTCGCACCAT
1 ATATATATAC-CAACAT
49217889 ATATATATA
1 ATATATATA
49217898 TATATTATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 9 0.41
17 13 0.59
ACGTcount: A:0.45, C:0.17, G:0.02, T:0.36
Consensus pattern (16 bp):
ATATATATACCAACAT
Found at i:49219195 original size:13 final size:13
Alignment explanation
Indices: 49219177--49219201 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49219167 CAATCAAATG
49219177 CACACAAAATAAA
1 CACACAAAATAAA
49219190 CACACAAAATAA
1 CACACAAAATAA
49219202 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:49224853 original size:41 final size:41
Alignment explanation
Indices: 49224836--49224989 Score: 272
Period size: 41 Copynumber: 3.8 Consensus size: 41
49224826 ACTTATAGCA
*
49224836 TGATTCAGATCACCGGCACGTAGCCTGCTAGGTTTATAACC
1 TGATTCAGATCACCGGCACATAGCCTGCTAGGTTTATAACC
* *
49224877 TGATTCAAATCACCGGCACGTAGCCTGCTAGGTTTATAACC
1 TGATTCAGATCACCGGCACATAGCCTGCTAGGTTTATAACC
49224918 TGATTCAGATCACCGGCACATAGCCTGCTAGGTTTATAACC
1 TGATTCAGATCACCGGCACATAGCCTGCTAGGTTTATAACC
*
49224959 TGATTCAGATCACCGGCACGTAGCCTGCTAG
1 TGATTCAGATCACCGGCACATAGCCTGCTAG
49224990 ACTTAAAGTC
Statistics
Matches: 109, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 109 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (41 bp):
TGATTCAGATCACCGGCACATAGCCTGCTAGGTTTATAACC
Found at i:49226725 original size:13 final size:13
Alignment explanation
Indices: 49226707--49226731 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49226697 CAATCAAATG
49226707 CACACAAAATAAA
1 CACACAAAATAAA
49226720 CACACAAAATAA
1 CACACAAAATAA
49226732 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:49236080 original size:15 final size:16
Alignment explanation
Indices: 49236048--49236080 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
49236038 ATTTCATCTC
*
49236048 ATTTGCATTTAGGTTA
1 ATTTGCATCTAGGTTA
49236064 ATTTGCATCTA-GTTA
1 ATTTGCATCTAGGTTA
49236079 AT
1 AT
49236081 CAATTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.27, C:0.09, G:0.15, T:0.48
Consensus pattern (16 bp):
ATTTGCATCTAGGTTA
Found at i:49240636 original size:8 final size:8
Alignment explanation
Indices: 49240623--49240648 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
49240613 CACAAAGGTT
49240623 CATATATA
1 CATATATA
49240631 CATATATA
1 CATATATA
49240639 CATATATA
1 CATATATA
49240647 CA
1 CA
49240649 CACGTACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (8 bp):
CATATATA
Found at i:49247742 original size:18 final size:17
Alignment explanation
Indices: 49247714--49247747 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
49247704 AGTAAAATAC
*
49247714 TAAAAATTAATGTATTT
1 TAAAAATTAATATATTT
49247731 TAAAATATTAATATATT
1 TAAAA-ATTAATATATT
49247748 AATATAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
TAAAAATTAATATATTT
Found at i:49250713 original size:20 final size:19
Alignment explanation
Indices: 49250688--49250725 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
49250678 CATCCTCTTA
49250688 AGAAAGAAAAAAACAGAAAT
1 AGAAAGAAAAAAA-AGAAAT
*
49250708 AGAAAGAAGAAAAAGAAA
1 AGAAAGAAAAAAAAGAAA
49250726 GCCTCCTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.76, C:0.03, G:0.18, T:0.03
Consensus pattern (19 bp):
AGAAAGAAAAAAAAGAAAT
Found at i:49254114 original size:20 final size:19
Alignment explanation
Indices: 49254081--49254119 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
49254071 AAAAAACATG
* *
49254081 ATTTTTTTTTAAAATATAA
1 ATTTTTTTTAAAAAAATAA
49254100 ATTTTTTATTAAAAAAATAA
1 ATTTTTT-TTAAAAAAATAA
49254120 GAGTTGCCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTTTTTTAAAAAAATAA
Found at i:49257506 original size:15 final size:15
Alignment explanation
Indices: 49257486--49257515 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
49257476 TAATCCTTAA
49257486 TAATTATCTCAATAT
1 TAATTATCTCAATAT
*
49257501 TAATTATCTTAATAT
1 TAATTATCTCAATAT
49257516 AACTAAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCTCAATAT
Found at i:49267694 original size:16 final size:15
Alignment explanation
Indices: 49267665--49267719 Score: 65
Period size: 15 Copynumber: 3.5 Consensus size: 15
49267655 TTTTAAAAAT
49267665 TTTAAAAATATTTTA
1 TTTAAAAATATTTTA
*
49267680 TTTAACAATACTTTTA
1 TTTAAAAATA-TTTTA
* *
49267696 TCTCAAAAATATTTTT
1 T-TTAAAAATATTTTA
49267712 TTTAAAAA
1 TTTAAAAA
49267720 CAGTGTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
15 15 0.45
16 11 0.33
17 7 0.21
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (15 bp):
TTTAAAAATATTTTA
Found at i:49267711 original size:17 final size:15
Alignment explanation
Indices: 49267668--49267710 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
49267658 TAAAAATTTT
*
49267668 AAAAATATTTTATTT
1 AAAAATATTTTATTC
*
49267683 AACAATACTTTTATCTC
1 AAAAATA-TTTTAT-TC
49267700 AAAAATATTTT
1 AAAAATATTTT
49267711 TTTTAAAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 6 0.26
16 10 0.43
17 7 0.30
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAAATATTTTATTC
Found at i:49268542 original size:16 final size:17
Alignment explanation
Indices: 49268513--49268554 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
49268503 TTATATGATA
*
49268513 TTTAATATTTTTTAAAT
1 TTTAATATTATTTAAAT
49268530 TTTAAT-TTATTTAAAT
1 TTTAATATTATTTAAAT
*
49268546 ATT-ATATTA
1 TTTAATATTA
49268555 CAATTTAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTAATATTATTTAAAT
Found at i:49269559 original size:24 final size:24
Alignment explanation
Indices: 49269519--49269564 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
49269509 TTATGACAGT
*
49269519 TTTTATTTATTTACTTTTTTTAAG
1 TTTTATTTATTTACTTTATTTAAG
*
49269543 TTTT-TTTATTTGTCTTTATTTA
1 TTTTATTTATTT-ACTTTATTTA
49269565 TTTATTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.74
Consensus pattern (24 bp):
TTTTATTTATTTACTTTATTTAAG
Found at i:49269631 original size:25 final size:25
Alignment explanation
Indices: 49269603--49269695 Score: 79
Period size: 24 Copynumber: 3.6 Consensus size: 25
49269593 AAAAAAATTG
49269603 AAATGTTTTATAATAT-TAT-TTTTTA
1 AAAT-TTTTA-AATATATATATTTTTA
49269628 AAA-TTTTAAATATATATATTTTTA
1 AAATTTTTAAATATATATATTTTTA
*
49269652 AATATTTTTTAAATTTAAATATTATTTTT-
1 AA-A-TTTTTAAA--TATATA-TATTTTTA
49269681 AAA-TTTTAAATATAT
1 AAATTTTTAAATATAT
49269696 TTTTAATAAT
Statistics
Matches: 58, Mismatches: 2, Indels: 17
0.75 0.03 0.22
Matches are distributed among these distances:
22 5 0.09
23 8 0.14
24 12 0.21
25 4 0.07
26 7 0.12
27 7 0.12
28 1 0.02
29 7 0.12
30 7 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (25 bp):
AAATTTTTAAATATATATATTTTTA
Found at i:49269641 original size:27 final size:26
Alignment explanation
Indices: 49269611--49269694 Score: 93
Period size: 26 Copynumber: 3.2 Consensus size: 26
49269601 TGAAATGTTT
49269611 TATAATATTATTTTTTAAAATTTTAAA
1 TATAATATTA-TTTTTAAAATTTTAAA
49269638 TAT-ATA-TATTTTTAAATATTTTTTAAA
1 TATAATATTATTTTTAAA-A--TTTTAAA
*
49269665 TTTAAATATTATTTTT-AAATTTTAAA
1 TAT-AATATTATTTTTAAAATTTTAAA
49269691 TATA
1 TATA
49269695 TTTTTAATAA
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
24 8 0.16
25 4 0.08
26 12 0.24
27 12 0.24
28 1 0.02
29 5 0.10
30 7 0.14
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (26 bp):
TATAATATTATTTTTAAAATTTTAAA
Found at i:49269679 original size:19 final size:19
Alignment explanation
Indices: 49269608--49269701 Score: 90
Period size: 19 Copynumber: 4.9 Consensus size: 19
49269598 AATTGAAATG
49269608 TTTTATAATATTATTTTTTAAAA
1 TTTTA-AATA-TA-TTTTT-AAA
* *
49269631 TTTTAAATATA--TAT-AT
1 TTTTAAATATATTTTTAAA
49269647 TTTTAAATAT-TTTTTAAA
1 TTTTAAATATATTTTTAAA
49269665 -TTTAAATATTATTTTTAAA
1 TTTTAAATA-TATTTTTAAA
49269684 TTTTAAATATATTTTTAA
1 TTTTAAATATATTTTTAA
49269702 TAATACAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
16 11 0.18
17 10 0.16
18 4 0.07
19 17 0.28
20 8 0.13
21 2 0.03
22 4 0.07
23 5 0.08
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTAAATATATTTTTAAA
Found at i:49269679 original size:20 final size:20
Alignment explanation
Indices: 49269653--49269699 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
49269643 ATATTTTTAA
49269653 ATATTTTTTAAA-TTTAAAT
1 ATATTTTTTAAATTTTAAAT
49269672 AT-TATTTTTAAATTTTAAAT
1 ATAT-TTTTTAAATTTTAAAT
49269692 ATATTTTT
1 ATATTTTT
49269700 AATAATACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.04
19 10 0.40
20 13 0.52
21 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATTTTTTAAATTTTAAAT
Found at i:49269795 original size:9 final size:9
Alignment explanation
Indices: 49269756--49269828 Score: 67
Period size: 10 Copynumber: 7.8 Consensus size: 9
49269746 TTATTATTAG
*
49269756 TTTTATAAT
1 TTTTAAAAT
49269765 ATTTT-AAAT
1 -TTTTAAAAT
*
49269774 TTTTAAATTT
1 TTTTAAA-AT
49269784 TTTTAAAATT
1 TTTTAAAA-T
*
49269794 TTTTATAAT
1 TTTTAAAAT
*
49269803 ATTTTAAATT
1 -TTTTAAAAT
49269813 TTTTAAAAT
1 TTTTAAAAT
49269822 TTTTAAA
1 TTTTAAA
49269829 TATATTATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
8 4 0.08
9 21 0.40
10 27 0.52
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:49269826 original size:38 final size:38
Alignment explanation
Indices: 49269756--49269828 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
49269746 TTATTATTAG
*
49269756 TTTTATAATATTTTAAATTTTTAAATTTTTTTAAAATT
1 TTTTATAATATTTTAAATTTTTAAATATTTTTAAAATT
49269794 TTTTATAATATTTTAAATTTTTTAAA-ATTTTTAAA
1 TTTTATAATATTTTAAA-TTTTTAAATATTTTTAAA
49269829 TATATTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
38 25 0.76
39 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (38 bp):
TTTTATAATATTTTAAATTTTTAAATATTTTTAAAATT
Found at i:49269888 original size:28 final size:27
Alignment explanation
Indices: 49269742--49269897 Score: 95
Period size: 28 Copynumber: 5.5 Consensus size: 27
49269732 ATGACCTTTC
* *
49269742 AAATTTATTATTAGTTTTATAATATTTT
1 AAATTTATTATT-TTTTTAAAATATTTT
*
49269770 AAATTT-TTAAATTTTTTTAAAATTTTTT
1 AAATTTATT--ATTTTTTTAAAATATTTT
*
49269798 ATAATATT-TTAAATTTTTTAAAAT-TTTT
1 A-AAT-TTATT-ATTTTTTTAAAATATTTT
* ** *
49269826 AAATATATTATTTTTAAAGAAATGACCTTTC
1 AAATTTATTATTTTTTTA-AAAT-A--TTTT
*
49269857 AAATTTATTATTTGTTTTATAATATTTT
1 AAATTTATTATTT-TTTTAAAATATTTT
*
49269885 AAATGTA-TATTTT
1 AAATTTATTATTTT
49269898 AAATATTTTT
Statistics
Matches: 102, Mismatches: 15, Indels: 24
0.72 0.11 0.17
Matches are distributed among these distances:
26 8 0.08
27 16 0.16
28 33 0.32
29 19 0.19
30 5 0.05
31 18 0.18
32 3 0.03
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (27 bp):
AAATTTATTATTTTTTTAAAATATTTT
Found at i:49269982 original size:32 final size:30
Alignment explanation
Indices: 49269941--49269999 Score: 91
Period size: 32 Copynumber: 1.9 Consensus size: 30
49269931 AAATTATTAA
*
49269941 TTTTTAAATTAATTTTAAAGATATTTAAACAT
1 TTTTTAAATTAAATTTAAA-AT-TTTAAACAT
49269973 TTTTTAAATTAAATTTAAAATTTTAAA
1 TTTTTAAATTAAATTTAAAATTTTAAA
49270000 AATTAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 6 0.23
31 2 0.08
32 18 0.69
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (30 bp):
TTTTTAAATTAAATTTAAAATTTTAAACAT
Found at i:49269991 original size:22 final size:22
Alignment explanation
Indices: 49269961--49270010 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
49269951 AATTTTAAAG
**
49269961 ATATTTAAACATTTTTTAAATTA
1 ATATTTAAA-ATTTTAAAAATTA
49269984 A-ATTTAAAATTTTAAAAATTA
1 ATATTTAAAATTTTAAAAATTA
49270005 ATATTT
1 ATATTT
49270011 TATTTGGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 12 0.50
22 11 0.46
23 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATTTAAAATTTTAAAAATTA
Found at i:49270306 original size:86 final size:85
Alignment explanation
Indices: 49270161--49270345 Score: 325
Period size: 86 Copynumber: 2.2 Consensus size: 85
49270151 GCATATATAG
* *
49270161 AATGGTGAAATTGTTGTGTTCAATAGGAGAGTTTAAAAATTCTGTTGAAGATGAATAATGAGGTG
1 AATGGTGAAATTGTTGTGTTCAATAGGAGAGTTCAAAAATTCTGTTGAAAATGAATAATGAGGTG
49270226 TTTTTGGTGTATATTTTTTTT
66 TTTTTGGTGTATA-TTTTTTT
* *
49270247 AATGGCGAAATTGTTGTGTTCAGTAGGAGAGTTCAAAAATTCTGTTGAAAATGAATAATGAGGTG
1 AATGGTGAAATTGTTGTGTTCAATAGGAGAGTTCAAAAATTCTGTTGAAAATGAATAATGAGGTG
49270312 TTTTTGGTGTATATTTTTTT
66 TTTTTGGTGTATATTTTTTT
49270332 AATGGTGAAATTGT
1 AATGGTGAAATTGT
49270346 AGAAAGTGAT
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
85 20 0.21
86 74 0.79
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.42
Consensus pattern (85 bp):
AATGGTGAAATTGTTGTGTTCAATAGGAGAGTTCAAAAATTCTGTTGAAAATGAATAATGAGGTG
TTTTTGGTGTATATTTTTTT
Found at i:49274608 original size:30 final size:30
Alignment explanation
Indices: 49274573--49274678 Score: 115
Period size: 30 Copynumber: 3.6 Consensus size: 30
49274563 TAGTGGTTGC
* *
49274573 TCTGGGTGAAATGAACTCGAACTGCCTATG
1 TCTGGGTGATATGAACTCGAACTGCCCATG
* ** *
49274603 TCTGGGTGATACGAACTCGAACCACCCAAG
1 TCTGGGTGATATGAACTCGAACTGCCCATG
** *
49274633 TC-CAGTGATATGAACTTGAACTGCCCATG
1 TCTGGGTGATATGAACTCGAACTGCCCATG
*
49274662 TCAGGGTGATATGAACT
1 TCTGGGTGATATGAACT
49274679 GCTTTGCGAC
Statistics
Matches: 60, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
29 22 0.37
30 38 0.63
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (30 bp):
TCTGGGTGATATGAACTCGAACTGCCCATG
Found at i:49274659 original size:29 final size:29
Alignment explanation
Indices: 49274607--49274678 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
49274597 CCTATGTCTG
*
49274607 GGTGATACGAACTCGAACCACCCAAGTCCA
1 GGTGATATGAACTCGAACCACCCAAGT-CA
* ** *
49274637 -GTGATATGAACTTGAACTGCCCATGTCA
1 GGTGATATGAACTCGAACCACCCAAGTCA
49274665 GGGTGATATGAACT
1 -GGTGATATGAACT
49274679 GCTTTGCGAC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 2 0.06
29 21 0.60
30 12 0.34
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.22
Consensus pattern (29 bp):
GGTGATATGAACTCGAACCACCCAAGTCA
Found at i:49277396 original size:16 final size:18
Alignment explanation
Indices: 49277358--49277399 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
49277348 TAAAGTCATA
49277358 TTTTTTAACAAATAAATCTT
1 TTTTTTAACAAATAAA--TT
49277378 TTTTTTAACAAAT-AATT
1 TTTTTTAACAAATAAATT
49277395 TTTTT
1 TTTTT
49277400 CTAATTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.32
19 2 0.09
20 13 0.59
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTTTTAACAAATAAATT
Found at i:49277443 original size:27 final size:28
Alignment explanation
Indices: 49277413--49277473 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
49277403 ATTAATTCAG
**
49277413 TTTTTTATTTTTTAAATAAAATATT-AT
1 TTTTTTAAATTTTAAATAAAATATTAAT
* *
49277440 TTTTTAAAATTTTAAATAAAATTTTAAT
1 TTTTTTAAATTTTAAATAAAATATTAAT
49277468 TTTTTT
1 TTTTTT
49277474 TGAATATCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTTTTAAATTTTAAATAAAATATTAAT
Found at i:49277650 original size:21 final size:21
Alignment explanation
Indices: 49277618--49277716 Score: 88
Period size: 20 Copynumber: 4.9 Consensus size: 21
49277608 TTTTATATTA
49277618 TTAAAAAT-ATATTTAAAATT
1 TTAAAAATAATATTTAAAATT
49277638 TTAAAAATAATATTT-AAATT
1 TTAAAAATAATATTTAAAATT
*
49277658 TTTAAAA-AATAATTTAAAA--
1 TTAAAAATAAT-ATTTAAAATT
*
49277677 --AAGAAT-ATATTTAAAATT
1 TTAAAAATAATATTTAAAATT
49277695 TTAAAAAAGTAATATTATAAAA
1 TT-AAAAA-TAATATT-TAAAA
49277717 CATTTCAAAT
Statistics
Matches: 63, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
16 8 0.13
17 5 0.08
19 3 0.05
20 23 0.37
21 13 0.21
22 1 0.02
23 5 0.08
24 5 0.08
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
TTAAAAATAATATTTAAAATT
Found at i:49277651 original size:59 final size:61
Alignment explanation
Indices: 49277588--49277727 Score: 146
Period size: 57 Copynumber: 2.3 Consensus size: 61
49277578 GAAAGGTCAT
*** * **
49277588 ATATTTAAAATATTTAAATGTTTTATATTATTAAA-AATATATTTAAAATTTT-AAAAA-TA
1 ATATTTAAAATATTTAAATAAATAAT-TTAAAAAAGAATATATTTAAAATTTTAAAAAAGTA
*
49277647 ATATTT-AAATTTTTAAA-AAATAATTTAAAAAAGAATATATTTAAAATTTTAAAAAAGTA
1 ATATTTAAAATATTTAAATAAATAATTTAAAAAAGAATATATTTAAAATTTTAAAAAAGTA
*
49277706 ATATTATAAAACATTTCAAATA
1 ATATT-TAAAATATTT-AAATA
49277728 CACATTTTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
56 6 0.09
57 20 0.31
58 15 0.23
59 13 0.20
60 1 0.02
61 6 0.09
62 3 0.05
63 1 0.02
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.42
Consensus pattern (61 bp):
ATATTTAAAATATTTAAATAAATAATTTAAAAAAGAATATATTTAAAATTTTAAAAAAGTA
Found at i:49277709 original size:23 final size:25
Alignment explanation
Indices: 49277670--49277716 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
49277660 TAAAAAATAA
49277670 TTTAAAAAAGAATATATT-TAAAAT
1 TTTAAAAAAGAATATATTATAAAAT
*
49277694 TTTAAAAAAGTA-ATATTATAAAA
1 TTTAAAAAAGAATATATTATAAAA
49277717 CATTTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (25 bp):
TTTAAAAAAGAATATATTATAAAAT
Found at i:49279398 original size:27 final size:27
Alignment explanation
Indices: 49279358--49279412 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
49279348 AATATATTGG
*
49279358 ATTTATACTCTTGACTTTTGTTTGTCA
1 ATTTATACTATTGACTTTTGTTTGTCA
*
49279385 ATTTGTACTATTGACTTTTGTTTGTCA
1 ATTTATACTATTGACTTTTGTTTGTCA
49279412 A
1 A
49279413 CTTCTCTCGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.55
Consensus pattern (27 bp):
ATTTATACTATTGACTTTTGTTTGTCA
Found at i:49287375 original size:85 final size:85
Alignment explanation
Indices: 49287277--49287437 Score: 227
Period size: 85 Copynumber: 1.9 Consensus size: 85
49287267 GCTTACAGGG
* * * * *
49287277 AAAACGCTGCTAAAGCTCATGTTCTTTAGTGGCGC-TACCGAAAAAAACGCCGCT-AAAGATCAT
1 AAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTTA-CGAAAAAAACGCCGCTAAAAG-TAAT
49287340 GTTCTTTAGCGGCACTTGGGAA
64 GTTCTTTAGCGGCACTTGGGAA
* *
49287362 AAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTTAGGAAGAAAACGCCGCTAAAAGTAATGT
1 AAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTTACGAAAAAAACGCCGCTAAAAGTAATGT
49287427 TCTTTAGCGGC
66 TCTTTAGCGGC
49287438 GCTTATTTCA
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
85 61 0.91
86 6 0.09
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (85 bp):
AAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTTACGAAAAAAACGCCGCTAAAAGTAATGT
TCTTTAGCGGCACTTGGGAA
Found at i:49287441 original size:43 final size:43
Alignment explanation
Indices: 49287276--49287442 Score: 214
Period size: 43 Copynumber: 3.9 Consensus size: 43
49287266 CGCTTACAGG
* * * *
49287276 GAAAACGCTGCTAAAGCTCATGTTCTTTAGTGGCGC-TACCGAA
1 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA-GGAA
* * *
49287319 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCACTTGGGAA
1 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAA
*
49287362 -AAAACGCCGCTAAAGATCATGTTCTTTAGCGACGCTTAGGAA
1 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAA
*
49287404 GAAAACGCCGCTAAA-AGTAATGTTCTTTAGCGGCGCTTA
1 GAAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTA
49287443 TTTCACAAAC
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 40 0.37
43 68 0.62
44 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (43 bp):
GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGGAA
Found at i:49287896 original size:12 final size:12
Alignment explanation
Indices: 49287879--49287927 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
49287869 TTTTGAACCT
49287879 CTGCTTCTCTCG
1 CTGCTTCTCTCG
49287891 CTGCTTCTCTCG
1 CTGCTTCTCTCG
**
49287903 CTGCGGC-CT--
1 CTGCTTCTCTCG
49287912 CTGCTTCTCTCG
1 CTGCTTCTCTCG
49287924 CTGC
1 CTGC
49287928 AGCCTCTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
9 5 0.17
10 2 0.07
11 2 0.07
12 21 0.70
ACGTcount: A:0.00, C:0.43, G:0.20, T:0.37
Consensus pattern (12 bp):
CTGCTTCTCTCG
Found at i:49287915 original size:21 final size:21
Alignment explanation
Indices: 49287891--49287948 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
49287881 GCTTCTCTCG
*
49287891 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
49287912 CTGCTTCTCTCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
49287933 CTGCTTCCCTCGCTGC
1 CTGCTTCTCTCGCTGC
49287949 CACCTATGCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.02, C:0.45, G:0.21, T:0.33
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:49287958 original size:21 final size:21
Alignment explanation
Indices: 49287891--49287959 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
49287881 GCTTCTCTCG
**
49287891 CTGCTTCTCTCGCTGCGGCCT
1 CTGCTTCTCTCGCTGCCACCT
49287912 CTGCTTCTCTCGCTG-CAGCCT
1 CTGCTTCTCTCGCTGCCA-CCT
*
49287933 CTGCTTCCCTCGCTGCCACCT
1 CTGCTTCTCTCGCTGCCACCT
*
49287954 ATGCTT
1 CTGCTT
49287960 TAAGTTGTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
21 40 0.95
22 2 0.05
ACGTcount: A:0.04, C:0.43, G:0.19, T:0.33
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCCACCT
Found at i:49304704 original size:9 final size:9
Alignment explanation
Indices: 49304689--49304739 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
49304679 ATGTAGTGAT
49304689 TTAATTCGG
1 TTAATTCGG
*
49304698 GTAATTCGG
1 TTAATTCGG
* **
49304707 GTAATTCTA
1 TTAATTCGG
49304716 TTAATTCGG
1 TTAATTCGG
49304725 TTAATTCGG
1 TTAATTCGG
49304734 TTAATT
1 TTAATT
49304740 TTTAACCAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (9 bp):
TTAATTCGG
Found at i:49305853 original size:60 final size:60
Alignment explanation
Indices: 49305755--49305899 Score: 193
Period size: 60 Copynumber: 2.4 Consensus size: 60
49305745 ACACATTCTA
* * * * **
49305755 TCAATTTGATCCTAAATCTAAAAATTCAACAAAGTTAGCCCTCAATGTTTACAAAATTTG
1 TCAATTTAATTCTAATTCTTAAAATTCAACAAAGTTAGCCCTCAACATTTACAAAATTTG
* * * *
49305815 TCATTTTAGTTCTAATTCTTAAAATTCAATAAATTTAGCCCTCAACATTTACAAAATTTG
1 TCAATTTAATTCTAATTCTTAAAATTCAACAAAGTTAGCCCTCAACATTTACAAAATTTG
49305875 TCAATTTAATTCTAATTC-TAAAATT
1 TCAATTTAATTCTAATTCTTAAAATT
49305900 TTAAAAAAAG
Statistics
Matches: 73, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
59 7 0.10
60 66 0.90
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (60 bp):
TCAATTTAATTCTAATTCTTAAAATTCAACAAAGTTAGCCCTCAACATTTACAAAATTTG
Found at i:49310433 original size:83 final size:84
Alignment explanation
Indices: 49310307--49310471 Score: 296
Period size: 83 Copynumber: 2.0 Consensus size: 84
49310297 ATACCATATT
*
49310307 ATCCTAACCCAATCAAAGCTAAGAATAATATGTTCAACAATCTCATCCTCAATACCACATAAACA
1 ATCCTAACCCAATCAAAGCTAAAAATAATATGTTCAACAATCTCATCCTCAATACCACATAAACA
49310372 ACAAATTAGGTTCGAAAAA
66 ACAAATTAGGTTCGAAAAA
* *
49310391 ATCCTATCCCAATCAAA-CTAAAAATAATATGTTCAACAATCTCATCTTCAATACCACATAAACA
1 ATCCTAACCCAATCAAAGCTAAAAATAATATGTTCAACAATCTCATCCTCAATACCACATAAACA
49310455 ACAAATTAGGTTCGAAA
66 ACAAATTAGGTTCGAAA
49310472 CAAACTTTCT
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
83 62 0.79
84 16 0.21
ACGTcount: A:0.46, C:0.24, G:0.06, T:0.24
Consensus pattern (84 bp):
ATCCTAACCCAATCAAAGCTAAAAATAATATGTTCAACAATCTCATCCTCAATACCACATAAACA
ACAAATTAGGTTCGAAAAA
Done.