Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 158 of 211
Found at i:49625955 original size:27 final size:27
Alignment explanation
Indices: 49625925--49625978 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
49625915 TTTTAATTCA
49625925 AGGGTTAGAGTTTTTAAGTTAAGGGTT
1 AGGGTTAGAGTTTTTAAGTTAAGGGTT
*
49625952 AGGGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTAGAGTTTTTAAGTTAAGGGTT
49625979 TAAGGTTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.41
Consensus pattern (27 bp):
AGGGTTAGAGTTTTTAAGTTAAGGGTT
Found at i:49628362 original size:26 final size:26
Alignment explanation
Indices: 49628331--49628399 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 26
49628321 CCCATTTTTT
* *
49628331 AATAAACATTAAAAAATTATTTTAAA
1 AATAAAAATTAAAAAAATATTTTAAA
*
49628357 AATAAAAAAATAAAAAAATATTTTAAA
1 AAT-AAAAATTAAAAAAATATTTTAAA
49628384 AATTAAAAATTAAAAA
1 AA-TAAAAATTAAAAA
49628400 TTAAAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 3 0.08
27 33 0.89
28 1 0.03
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (26 bp):
AATAAAAATTAAAAAAATATTTTAAA
Found at i:49628391 original size:6 final size:7
Alignment explanation
Indices: 49628379--49628407 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
49628369 AAAAAATATT
49628379 TTAAAAA
1 TTAAAAA
49628386 TTAAAAA
1 TTAAAAA
49628393 TTAAAAA
1 TTAAAAA
49628400 TTAAAAA
1 TTAAAAA
49628407 T
1 T
49628408 ATATTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
TTAAAAA
Found at i:49628865 original size:51 final size:51
Alignment explanation
Indices: 49628804--49628903 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
49628794 AATTATTTAA
49628804 AAATAGGGATTTAAGAGAAATTTA-AGAGGAAATTGAAAGCAAATTGAGATT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAAATTGAAAGCAAATTGAGATT
* * * * *
49628855 AAATATGGATTTCAGAGAAATTTGGAAGGAATTTGAGAGCAAATTGAGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAAAGCAAATTGAGA
49628904 GGAAATTTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.25, T:0.26
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAAATTGAAAGCAAATTGAGATT
Found at i:49628901 original size:11 final size:11
Alignment explanation
Indices: 49628881--49628938 Score: 71
Period size: 11 Copynumber: 5.2 Consensus size: 11
49628871 GAAATTTGGA
*
49628881 AGGAATTTGAG
1 AGGAAATTGAG
*
49628892 AGCAAATTGAG
1 AGGAAATTGAG
*
49628903 AGGAAATTTAG
1 AGGAAATTGAG
49628914 AGGAAATTGAG
1 AGGAAATTGAG
*
49628925 AGAAAATTTGAG
1 AGGAAA-TTGAG
49628937 AG
1 AG
49628939 AGGATTAGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
11 33 0.82
12 7 0.17
ACGTcount: A:0.45, C:0.02, G:0.31, T:0.22
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:49639951 original size:3 final size:3
Alignment explanation
Indices: 49639945--49639974 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
49639935 CATCACCACG
49639945 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
49639975 AAAGAATCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:49640359 original size:6 final size:6
Alignment explanation
Indices: 49640350--49640384 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
49640340 ATAGAGAAAT
*
49640350 ATATAT ATATAC ATATAC ATATAC ATATAC ATATA
1 ATATAC ATATAC ATATAC ATATAC ATATAC ATATA
49640385 ACACTCATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (6 bp):
ATATAC
Found at i:49640814 original size:16 final size:15
Alignment explanation
Indices: 49640782--49640820 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
49640772 AAATCTCCGA
*
49640782 TCTTTTCTTTCTGTT
1 TCTTTTTTTTCTGTT
*
49640797 TCTTTTTTTTCTTTTT
1 TCTTTTTTTTC-TGTT
49640813 TCTTTTTT
1 TCTTTTTT
49640821 AAATTTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.00, C:0.15, G:0.03, T:0.82
Consensus pattern (15 bp):
TCTTTTTTTTCTGTT
Found at i:49643478 original size:8 final size:7
Alignment explanation
Indices: 49643461--49643498 Score: 67
Period size: 7 Copynumber: 5.3 Consensus size: 7
49643451 AAATAGAATT
49643461 AAAAAGA
1 AAAAAGA
49643468 AAAAAGA
1 AAAAAGA
49643475 AAAAAGA
1 AAAAAGA
49643482 AAAAAGAA
1 AAAAAG-A
49643490 AAAAAGA
1 AAAAAGA
49643497 AA
1 AA
49643499 GCCAAATGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 23 0.77
8 7 0.23
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:49644319 original size:17 final size:19
Alignment explanation
Indices: 49644292--49644328 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
49644282 GTAACTTTTA
49644292 AAAGTTAAAACT-AAAAAT
1 AAAGTTAAAACTGAAAAAT
49644310 AAAG-TAAAACTGAAAAAT
1 AAAGTTAAAACTGAAAAAT
49644328 A
1 A
49644329 GAAGGTGGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.68, C:0.05, G:0.08, T:0.19
Consensus pattern (19 bp):
AAAGTTAAAACTGAAAAAT
Found at i:49647140 original size:3 final size:3
Alignment explanation
Indices: 49647132--49647196 Score: 121
Period size: 3 Copynumber: 21.7 Consensus size: 3
49647122 AAATTTGTAA
49647132 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
49647180 AAG AAG AAG AAA AAG AA
1 AAG AAG AAG AAG AAG AA
49647197 TATTATATTA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:49654396 original size:22 final size:22
Alignment explanation
Indices: 49654370--49654431 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
49654360 TATCTGATTA
49654370 TTAGCACATTAGTGCTCTCCGT
1 TTAGCACATTAGTGCTCTCCGT
* *
49654392 TTAGCACATTCGTGCTCTCTGT
1 TTAGCACATTAGTGCTCTCCGT
* * *
49654414 ATAGCACTTTAGTACTCT
1 TTAGCACATTAGTGCTCT
49654432 ATGTTCAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCCGT
Found at i:49658043 original size:27 final size:28
Alignment explanation
Indices: 49658018--49658071 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
49658008 CAGAAACAGC
*
49658018 ACAGTGTGGGCCTTAGCCCAATACAGAA
1 ACAGTGTGGGCCTAAGCCCAATACAGAA
* *
49658046 ATAGTGTGGGCCTAAGCCCGATACAG
1 ACAGTGTGGGCCTAAGCCCAATACAG
49658072 TATTAGTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.30, C:0.24, G:0.28, T:0.19
Consensus pattern (28 bp):
ACAGTGTGGGCCTAAGCCCAATACAGAA
Found at i:49658389 original size:32 final size:32
Alignment explanation
Indices: 49658289--49658523 Score: 188
Period size: 32 Copynumber: 7.4 Consensus size: 32
49658279 GAATGACTAC
* ** * *
49658289 AAGCCATAAGT-ACAGTAATGTGATTGGCAAA
1 AAGCCATCAGTAACAGTAACATGATCGGCACA
** * * * *
49658320 AAATCATCAGTAGCAGTGATATGATCGGTACA
1 AAGCCATCAGTAACAGTAACATGATCGGCACA
* * *
49658352 TAGCCATTAGTAACGGTAACATGATCGGCACA
1 AAGCCATCAGTAACAGTAACATGATCGGCACA
* * *
49658384 AAGCCATCAGTAGCAGTGACATGATCGGTACA
1 AAGCCATCAGTAACAGTAACATGATCGGCACA
* *
49658416 CAA-CCATCAATAACAGTAAAATGATCGGCACA
1 -AAGCCATCAGTAACAGTAACATGATCGGCACA
* * ** * *
49658448 CAGCCATCGGTAATGGTAATATGATCGACACA
1 AAGCCATCAGTAACAGTAACATGATCGGCACA
**
49658480 AAGCCATCAGTAACAGT-ACTATGATTAGCACA
1 AAGCCATCAGTAACAGTAAC-ATGATCGGCACA
49658512 AAGCCATCAGTA
1 AAGCCATCAGTA
49658524 GCATCGCAGC
Statistics
Matches: 156, Mismatches: 44, Indels: 7
0.75 0.21 0.03
Matches are distributed among these distances:
31 10 0.06
32 144 0.92
33 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAACATGATCGGCACA
Found at i:49658402 original size:64 final size:64
Alignment explanation
Indices: 49658289--49658526 Score: 230
Period size: 64 Copynumber: 3.7 Consensus size: 64
49658279 GAATGACTAC
* ** * * **
49658289 AAGCCATAAGT-ACAGTAATGTGATTGGCAAAAAATCATCAGTAGCAGTGATATGATCGGTACA
1 AAGCCATCAGTAACAGTAACATGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGTACA
* * * *
49658352 TAGCCATTAGTAACGGTAACATGATCGGCACAAAGCCATCAGTAGCAGTGACATGATCGGTACA
1 AAGCCATCAGTAACAGTAACATGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGTACA
* * * * *** * **
49658416 CAA-CCATCAATAACAGTAAAATGATCGGCACACAGCCATCGGTAATGGTAATATGATCGACACA
1 -AAGCCATCAGTAACAGTAACATGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGTACA
**
49658480 AAGCCATCAGTAACAGT-ACTATGATTAGCACAAAGCCATCAGTAGCA
1 AAGCCATCAGTAACAGTAAC-ATGATCGGCACAAAGCCATCAGTAGCA
49658527 TCGCAGCAAA
Statistics
Matches: 138, Mismatches: 33, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
63 12 0.09
64 125 0.91
65 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.21
Consensus pattern (64 bp):
AAGCCATCAGTAACAGTAACATGATCGGCACAAAGCCATCAGTAGCAGTGATATGATCGGTACA
Found at i:49658519 original size:96 final size:96
Alignment explanation
Indices: 49658340--49658520 Score: 231
Period size: 96 Copynumber: 1.9 Consensus size: 96
49658330 TAGCAGTGAT
* * * * *
49658340 ATGATCGGTACATAGCCATTAGTAACGGTAACATGATCGGCACAAAGCCATCAGTAGCAGTGACA
1 ATGATCGGCACACAGCCATCAGTAACGGTAACATGATCGACACAAAGCCATCAGTAACAGTGACA
* *
49658405 TGATCGGTACACAACCATCAATAACAGTAAA
66 TGATCAGCACACAACCATCAATAACAGTAAA
* * *
49658436 ATGATCGGCACACAGCCATCGGTAATGGTAATATGATCGACACAAAGCCATCAGTAACAGT-ACT
1 ATGATCGGCACACAGCCATCAGTAACGGTAACATGATCGACACAAAGCCATCAGTAACAGTGAC-
*
49658500 ATGATTAGCACA-AAGCCATCA
65 ATGATCAGCACACAA-CCATCA
49658521 GTAGCATCGC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
95 4 0.06
96 68 0.94
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.20
Consensus pattern (96 bp):
ATGATCGGCACACAGCCATCAGTAACGGTAACATGATCGACACAAAGCCATCAGTAACAGTGACA
TGATCAGCACACAACCATCAATAACAGTAAA
Found at i:49658605 original size:26 final size:26
Alignment explanation
Indices: 49658526--49658593 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
49658516 CATCAGTAGC
49658526 ATCGCAGCAAAGCTGCTAGCAAGAGT
1 ATCGCAGCAAAGCTGCTAGCAAGAGT
*
49658552 ATCGCAGCAAAGCTACTAGCAAGAGT
1 ATCGCAGCAAAGCTGCTAGCAAGAGT
49658578 ATCGCAGCAAAGCTGC
1 ATCGCAGCAAAGCTGC
49658594 CAGTAATAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.15
Consensus pattern (26 bp):
ATCGCAGCAAAGCTGCTAGCAAGAGT
Found at i:49658623 original size:27 final size:27
Alignment explanation
Indices: 49658593--49658656 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
49658583 AGCAAAGCTG
*
49658593 CCAGTAATAGT-ATATGTGGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
49658620 CCAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
49658647 CCAGT-ACAGT
1 CCAGTAACAGT
49658657 ACTTCCTCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
26 7 0.21
27 25 0.74
28 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:49658790 original size:23 final size:23
Alignment explanation
Indices: 49658760--49658806 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
49658750 TCATACCAAA
*
49658760 CACAGACAAATCAATAAATTAAC
1 CACAGACAAAACAATAAATTAAC
* *
49658783 CACAGACAAAACAATCATTTAAC
1 CACAGACAAAACAATAAATTAAC
49658806 C
1 C
49658807 TCGAGGGGCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.53, C:0.26, G:0.04, T:0.17
Consensus pattern (23 bp):
CACAGACAAAACAATAAATTAAC
Found at i:49660052 original size:21 final size:21
Alignment explanation
Indices: 49659998--49660052 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
49659988 TGTGTTTAGC
* * *
49659998 CACACGACCATGTGAGAGACT
1 CACACAACCGTGTCAGAGACT
* *
49660019 CACACAACTGTGTCAGAGAGT
1 CACACAACCGTGTCAGAGACT
*
49660040 CACACAGCCGTGT
1 CACACAACCGTGT
49660053 GAGCAAACCG
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.29, G:0.24, T:0.16
Consensus pattern (21 bp):
CACACAACCGTGTCAGAGACT
Found at i:49660650 original size:28 final size:29
Alignment explanation
Indices: 49660604--49660661 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
49660594 ATTTGAAAAC
* *
49660604 TTAATCATATTGCGGAATAGTCAAC-AAT
1 TTAATCATATTGCGAAATAATCAACTAAT
*
49660632 TTAATCATATTGCTAAATAATCAACTAAT
1 TTAATCATATTGCGAAATAATCAACTAAT
49660661 T
1 T
49660662 CATGTCCCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 22 0.85
29 4 0.15
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (29 bp):
TTAATCATATTGCGAAATAATCAACTAAT
Found at i:49660958 original size:71 final size:70
Alignment explanation
Indices: 49660883--49661107 Score: 229
Period size: 71 Copynumber: 3.2 Consensus size: 70
49660873 CATTGGTAGA
* * * * * * *
49660883 TATAACTGGCAATAATTGCGCCTTGTGTTGGTCGGTAGAACCAAAAAATAAGTCTACTCAGCACT
1 TATAACCGACAATAAATGCGCCTTGTGCTGGTCGGTAGAACC-AAAAATAAGTGTGCCCAGCACT
49660948 AGTTGG
65 AGTTGG
* ** * * *
49660954 TATAACCGACAAGAAATGTACCTTGCGCTAGTCGGTAGAACTGC-CAAATAAGTGTGCCCAGCAC
1 TATAACCGACAATAAATGCGCCTTGTGCTGGTCGGTAGAAC--CAAAAATAAGTGTGCCCAGCAC
*
49661018 T-GATTGA
64 TAG-TTGG
* * *
49661025 TATAACCAACAATAAATGCGCTTTGTGCTGGTCGGTAGAATCCATAAATAAGTGTGCCCAGCACT
1 TATAACCGACAATAAATGCGCCTTGTGCTGGTCGGTAGAA-CCAAAAATAAGTGTGCCCAGCACT
*
49661090 AGTCGG
65 AGTTGG
49661096 TATAACCGACAA
1 TATAACCGACAA
49661108 ATAAGTGTTC
Statistics
Matches: 123, Mismatches: 25, Indels: 12
0.77 0.16 0.08
Matches are distributed among these distances:
70 2 0.02
71 118 0.96
72 2 0.02
73 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (70 bp):
TATAACCGACAATAAATGCGCCTTGTGCTGGTCGGTAGAACCAAAAATAAGTGTGCCCAGCACTA
GTTGG
Found at i:49676577 original size:40 final size:40
Alignment explanation
Indices: 49676521--49676708 Score: 270
Period size: 40 Copynumber: 4.7 Consensus size: 40
49676511 ATCGAAGTGT
* *
49676521 AAACAAGGGCATGTATGTGCAATCAGGGGTACCG-AGATAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAG-TAC
*
49676561 AAACAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* *
49676601 AAACAGGGGCACGTATGTGCAATTAGGGGTACTGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* * * *
49676641 AAACAAGGGCACATATATGCAATTAGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
49676681 AAACAGGGGCACGTATGTGCAATTCAGG
1 AAACAGGGGCACGTATGTGCAA-TCAGG
49676709 TATAATTAAC
Statistics
Matches: 132, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
40 126 0.95
41 6 0.05
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.18
Consensus pattern (40 bp):
AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
Found at i:49676587 original size:20 final size:20
Alignment explanation
Indices: 49676527--49676708 Score: 84
Period size: 20 Copynumber: 9.1 Consensus size: 20
49676517 GTGTAAACAA
*
49676527 GGGCATGTATGTGCAATCAG
1 GGGCACGTATGTGCAATCAG
* * *
49676547 GGGTACCG-A-GATACAAACAG
1 GGGCA-CGTATG-TGCAATCAG
49676567 GGGCACGTATGTGCAATCAG
1 GGGCACGTATGTGCAATCAG
* ** * * *
49676587 GGGTACCAAAGTACAAACAG
1 GGGCACGTATGTGCAATCAG
*
49676607 GGGCACGTATGTGCAATTAG
1 GGGCACGTATGTGCAATCAG
* * * * *
49676627 GGGTAC-TGAAGTACAAACAA
1 GGGCACGT-ATGTGCAATCAG
* * *
49676647 GGGCACATATATGCAATTAG
1 GGGCACGTATGTGCAATCAG
* * * *
49676667 GGGTACCG-AAGTACAAACAG
1 GGGCA-CGTATGTGCAATCAG
49676687 GGGCACGTATGTGCAATTCAG
1 GGGCACGTATGTGCAA-TCAG
49676708 G
1 G
49676709 TATAATTAAC
Statistics
Matches: 109, Mismatches: 44, Indels: 17
0.64 0.26 0.10
Matches are distributed among these distances:
19 6 0.06
20 95 0.87
21 8 0.07
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.18
Consensus pattern (20 bp):
GGGCACGTATGTGCAATCAG
Found at i:49680964 original size:23 final size:23
Alignment explanation
Indices: 49680938--49680982 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
49680928 CCGCTTTAGC
49680938 AGTGTTCTGTTATTCGCTTCGGT
1 AGTGTTCTGTTATTCGCTTCGGT
49680961 AGTGTTCTGTTATTCGCTTCGG
1 AGTGTTCTGTTATTCGCTTCGG
49680983 CGATGTTCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.09, C:0.18, G:0.27, T:0.47
Consensus pattern (23 bp):
AGTGTTCTGTTATTCGCTTCGGT
Found at i:49680989 original size:23 final size:23
Alignment explanation
Indices: 49680938--49680990 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
49680928 CCGCTTTAGC
*
49680938 AGTGTTCTGTTATTCGCTTCGGT
1 AGTGTTCTGTTATTCGCTTCGGG
49680961 AGTGTTCTGTTATTCGCTTCGGCG
1 AGTGTTCTGTTATTCGCTTCGG-G
49680985 A-TGTTC
1 AGTGTTC
49680991 AGTTCTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
23 27 0.96
24 1 0.04
ACGTcount: A:0.09, C:0.19, G:0.26, T:0.45
Consensus pattern (23 bp):
AGTGTTCTGTTATTCGCTTCGGG
Found at i:49694055 original size:3 final size:3
Alignment explanation
Indices: 49694047--49694073 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
49694037 CACGTGATCT
49694047 TCC TCC TCC TCC TCC TCC TCC TCC TCC
1 TCC TCC TCC TCC TCC TCC TCC TCC TCC
49694074 ACTTGAACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
TCC
Found at i:49696984 original size:15 final size:17
Alignment explanation
Indices: 49696964--49696995 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
49696954 ATTTTTTACA
49696964 AATA-TTTATT-TATTT
1 AATATTTTATTATATTT
49696979 AATATTTTATTATATTT
1 AATATTTTATTATATTT
49696996 TCATAGGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 6 0.40
17 5 0.33
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
AATATTTTATTATATTT
Found at i:49697479 original size:21 final size:21
Alignment explanation
Indices: 49697430--49697483 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
49697420 AAACAATTTT
**
49697430 TTATATTTTATTAGTTTTATGT
1 TTATATTTTA-TAGTTTTATAA
49697452 TTATATTTTATAGTTTTTATAA
1 TTATATTTTATAG-TTTTATAA
49697474 TT-TATTTTAT
1 TTATATTTTAT
49697484 TTAATAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 11 0.38
22 18 0.62
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTATATTTTATAGTTTTATAA
Found at i:49698013 original size:22 final size:22
Alignment explanation
Indices: 49697987--49698035 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
49697977 AATTTTTTAT
*
49697987 TAAATA-AATAAATTATAAAATA
1 TAAATATAA-AAATAATAAAATA
*
49698009 TAAATATAAAACTAATAAAATA
1 TAAATATAAAAATAATAAAATA
49698031 TAAAT
1 TAAAT
49698036 TTGTTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.92
23 2 0.08
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAATATAAAAATAATAAAATA
Found at i:49698329 original size:17 final size:17
Alignment explanation
Indices: 49698309--49698342 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
49698299 TATATTTTTA
49698309 TTTTTAATCAAATATAT
1 TTTTTAATCAAATATAT
* *
49698326 TTTTTTATTAAATATAT
1 TTTTTAATCAAATATAT
49698343 ATATATTTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTTAATCAAATATAT
Found at i:49698398 original size:38 final size:40
Alignment explanation
Indices: 49698286--49698407 Score: 119
Period size: 41 Copynumber: 3.0 Consensus size: 40
49698276 CCCGGCCCAA
49698286 ATTATATTAAATATATA-TTTTTATTTTTAAT-CAAATAT
1 ATTATATTAAATATATATTTTTTATTTTTAATCCAAATAT
* * *
49698324 ATTTTTTTATTAAATATATATATATTTTGGACTTTTAATCCGAAT-T
1 A---TTATATTAAATATATAT-T-TTTT--ATTTTTAATCCAAATAT
49698370 A-TATATTAAATATATATTTTTTATTTTTAAT-CAAATAT
1 ATTATATTAAATATATATTTTTTATTTTTAATCCAAATAT
49698408 GGGCCGGGCC
Statistics
Matches: 68, Mismatches: 6, Indels: 20
0.72 0.06 0.21
Matches are distributed among these distances:
37 4 0.06
38 10 0.15
40 4 0.06
41 16 0.24
42 15 0.22
43 1 0.01
44 4 0.06
46 10 0.15
47 4 0.06
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (40 bp):
ATTATATTAAATATATATTTTTTATTTTTAATCCAAATAT
Found at i:49701618 original size:19 final size:18
Alignment explanation
Indices: 49701586--49701632 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 18
49701576 TATTCAACCT
*
49701586 TTCTTTTGAGTTAATAAA
1 TTCTTTTGACTTAATAAA
49701604 TTCTCTTTGACTTAATAAA
1 TTCT-TTTGACTTAATAAA
49701623 TTCTATTTGA
1 TTCT-TTTGA
49701633 GATTTTCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.51
Consensus pattern (18 bp):
TTCTTTTGACTTAATAAA
Found at i:49703981 original size:25 final size:25
Alignment explanation
Indices: 49703953--49704005 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
49703943 CTAGGCAGAG
*
49703953 AGCCTGATATAAATAACCGGCACGA
1 AGCCTAATATAAATAACCGGCACGA
* *
49703978 AGCCTAATATAAATCACTGGCACGA
1 AGCCTAATATAAATAACCGGCACGA
49704003 AGC
1 AGC
49704006 ATGCTAGGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.25, G:0.19, T:0.17
Consensus pattern (25 bp):
AGCCTAATATAAATAACCGGCACGA
Found at i:49704028 original size:41 final size:41
Alignment explanation
Indices: 49703978--49704176 Score: 222
Period size: 41 Copynumber: 4.9 Consensus size: 41
49703968 ACCGGCACGA
* *
49703978 AGCCTAATATAAATCACTGGCACGAAGCATGCTAGGCACAG
1 AGCCTGATATAAATCACTGGCACGAAGCCTGCTAGGCACAG
* * * *
49704019 AGCCTAATATAAATCACCGGCACGAAGCTTGCTAGGCACAC
1 AGCCTGATATAAATCACTGGCACGAAGCCTGCTAGGCACAG
* * * * *
49704060 AGCTTGATA-CAA-CACATGGGCACGGAGTCTGCTAGGCACAT
1 AGCCTGATATAAATCAC-T-GGCACGAAGCCTGCTAGGCACAG
* *
49704101 AACCTGATATAAATCACTGGCACGAAGCCTGCTAGGCATAG
1 AGCCTGATATAAATCACTGGCACGAAGCCTGCTAGGCACAG
** *
49704142 AGCCTGATATAAATCACCAGCATGAAGCCTGCTAG
1 AGCCTGATATAAATCACTGGCACGAAGCCTGCTAG
49704177 ACTCAAAGTC
Statistics
Matches: 132, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 3 0.02
40 2 0.02
41 121 0.92
42 3 0.02
43 3 0.02
ACGTcount: A:0.34, C:0.26, G:0.22, T:0.19
Consensus pattern (41 bp):
AGCCTGATATAAATCACTGGCACGAAGCCTGCTAGGCACAG
Found at i:49708588 original size:339 final size:339
Alignment explanation
Indices: 49707968--49708649 Score: 1364
Period size: 339 Copynumber: 2.0 Consensus size: 339
49707958 ACAAAGTCAA
49707968 AACAGGGGAACCCAAATTCATTCTGACCTTGTCTCACAAAATTTATTATATCTCATGATTTACAA
1 AACAGGGGAACCCAAATTCATTCTGACCTTGTCTCACAAAATTTATTATATCTCATGATTTACAA
49708033 TTCCATTACTTACACCGTTTCTTCTATGGGAAACTAGACTTAATAAGATTTAATTCCATATTTTA
66 TTCCATTACTTACACCGTTTCTTCTATGGGAAACTAGACTTAATAAGATTTAATTCCATATTTTA
49708098 TTCATACTCTAATTCGATTTCCACAATTTATGGTGATTTTTCAAAGTTAACCTACTACTGCTATC
131 TTCATACTCTAATTCGATTTCCACAATTTATGGTGATTTTTCAAAGTTAACCTACTACTGCTATC
49708163 CAAAACTGTTTTAGTGCAAAATGTTGATTACTAAGTGTATAACTCCCTTATTCCCTTTCTCTATA
196 CAAAACTGTTTTAGTGCAAAATGTTGATTACTAAGTGTATAACTCCCTTATTCCCTTTCTCTATA
49708228 ATATTTCCCATCACTTTCACTTATTTCTCTTCACTAATATATCAAGAACTTAAGACCTTATATAA
261 ATATTTCCCATCACTTTCACTTATTTCTCTTCACTAATATATCAAGAACTTAAGACCTTATATAA
49708293 GAAAACTCTACTAT
326 GAAAACTCTACTAT
49708307 AACAGGGGAACCCAAATTCATTCTGACCTTGTCTCACAAAATTTATTATATCTCATGATTTACAA
1 AACAGGGGAACCCAAATTCATTCTGACCTTGTCTCACAAAATTTATTATATCTCATGATTTACAA
49708372 TTCCATTACTTACACCGTTTCTTCTATGGGAAACTAGACTTAATAAGATTTAATTCCATATTTTA
66 TTCCATTACTTACACCGTTTCTTCTATGGGAAACTAGACTTAATAAGATTTAATTCCATATTTTA
49708437 TTCATACTCTAATTCGATTTCCACAATTTATGGTGATTTTTCAAAGTTAACCTACTACTGCTATC
131 TTCATACTCTAATTCGATTTCCACAATTTATGGTGATTTTTCAAAGTTAACCTACTACTGCTATC
49708502 CAAAACTGTTTTAGTGCAAAATGTTGATTACTAAGTGTATAACTCCCTTATTCCCTTTCTCTATA
196 CAAAACTGTTTTAGTGCAAAATGTTGATTACTAAGTGTATAACTCCCTTATTCCCTTTCTCTATA
49708567 ATATTTCCCATCACTTTCACTTATTTCTCTTCACTAATATATCAAGAACTTAAGACCTTATATAA
261 ATATTTCCCATCACTTTCACTTATTTCTCTTCACTAATATATCAAGAACTTAAGACCTTATATAA
49708632 GAAAACTCTACTAT
326 GAAAACTCTACTAT
49708646 AACA
1 AACA
49708650 TTATTTCTAT
Statistics
Matches: 343, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
339 343 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (339 bp):
AACAGGGGAACCCAAATTCATTCTGACCTTGTCTCACAAAATTTATTATATCTCATGATTTACAA
TTCCATTACTTACACCGTTTCTTCTATGGGAAACTAGACTTAATAAGATTTAATTCCATATTTTA
TTCATACTCTAATTCGATTTCCACAATTTATGGTGATTTTTCAAAGTTAACCTACTACTGCTATC
CAAAACTGTTTTAGTGCAAAATGTTGATTACTAAGTGTATAACTCCCTTATTCCCTTTCTCTATA
ATATTTCCCATCACTTTCACTTATTTCTCTTCACTAATATATCAAGAACTTAAGACCTTATATAA
GAAAACTCTACTAT
Found at i:49709109 original size:2 final size:2
Alignment explanation
Indices: 49709102--49709128 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
49709092 CTTCTAGAAT
49709102 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
49709129 ATTTGACCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:49715087 original size:13 final size:13
Alignment explanation
Indices: 49715069--49715093 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49715059 TTTTATTTTA
49715069 TTTTTAATTAATT
1 TTTTTAATTAATT
49715082 TTTTTAATTAAT
1 TTTTTAATTAAT
49715094 AAATATATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTTTAATTAATT
Found at i:49715208 original size:20 final size:22
Alignment explanation
Indices: 49715168--49715210 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
49715158 ATATAAATAA
*
49715168 AATAATAAATATGTAATTATAT
1 AATAATAAATATATAATTATAT
49715190 AATAA-AAATATAT-ATTATAT
1 AATAATAAATATATAATTATAT
49715210 A
1 A
49715211 TTGTTGAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 7 0.35
22 5 0.25
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (22 bp):
AATAATAAATATATAATTATAT
Found at i:49715722 original size:19 final size:20
Alignment explanation
Indices: 49715686--49715731 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
49715676 CTCTTTTATT
49715686 TATATAAATAAAATAATAAA
1 TATATAAATAAAATAATAAA
*
49715706 TATATAAAT-ATATAATAAA
1 TATATAAATAAAATAATAAA
49715725 TATATAA
1 TATATAA
49715732 TTTTATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
TATATAAATAAAATAATAAA
Found at i:49715806 original size:15 final size:13
Alignment explanation
Indices: 49715789--49715814 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49715779 TCAATTAATT
49715789 TTTTTGATATATA
1 TTTTTGATATATA
49715802 TTTTTGATATATA
1 TTTTTGATATATA
49715815 ATATTTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TTTTTGATATATA
Found at i:49715893 original size:105 final size:105
Alignment explanation
Indices: 49715778--49716058 Score: 279
Period size: 105 Copynumber: 2.6 Consensus size: 105
49715768 TTTTAAAAGC
***
49715778 ATCAATTAATT-TTTTTGATATA-TATTTTTGATATATAATATTTATATGTCAAATATTTATTTT
1 ATCAATTAATTATTTCAAATATATTATTTTTGATATATAATATTTATATGTCAAATATTTATTTT
* *
49715841 CTCTACCTACATTATGGGTGTGTTGAT-TTCTAATATTATAAA
66 -TC-ACCTACATTATGGGTATGGT-ATATTCTAATATTATAAA
* * * * * *
49715883 ATCAAATAATTCTTTCAAATATTATTATTATTTTATATAGAA-A---ATATTTCAAATATAATTG
1 ATCAATTAATTATTTCAAATA-TATTATT-TTTGATATATAATATTTATATGTCAAATAT--TTA
* *
49715944 TTTTTCATCTACATTGTGGGTATGGTATATTCTAATATTATAAA
62 TTTTTCACCTACATTATGGGTATGGTATATTCTAATATTATAAA
* * *
49715988 ATCAATTAATTATTTCAAATATCATTATTTTTAGTAAATATAATTTTTATATGTGAAATATTTAT
1 ATCAATTAATTATTTCAAATAT-ATTATTTTT-G-ATATATAATATTTATATGTCAAATATTTAT
49716053 TTTTCA
63 TTTTCA
49716059 ATCCATATCA
Statistics
Matches: 141, Mismatches: 21, Indels: 25
0.75 0.11 0.13
Matches are distributed among these distances:
104 6 0.04
105 78 0.55
106 14 0.10
107 8 0.06
108 14 0.10
109 10 0.07
110 11 0.08
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (105 bp):
ATCAATTAATTATTTCAAATATATTATTTTTGATATATAATATTTATATGTCAAATATTTATTTT
TCACCTACATTATGGGTATGGTATATTCTAATATTATAAA
Found at i:49716516 original size:19 final size:20
Alignment explanation
Indices: 49716492--49716544 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
49716482 AACATAATGA
49716492 TATATATATATATTT-TTAT
1 TATATATATATATTTATTAT
*
49716511 TATATAATTACATATTTATTAT
1 TATAT-A-TATATATTTATTAT
* *
49716533 TTTATTTATATA
1 TATATATATATA
49716545 AATAAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 5 0.19
20 6 0.22
21 8 0.30
22 8 0.30
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
TATATATATATATTTATTAT
Found at i:49723189 original size:20 final size:20
Alignment explanation
Indices: 49723160--49723209 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
49723150 TATTTACTGG
*
49723160 GTATCAATACGTAATGAAAA
1 GTATCGATACGTAATGAAAA
*
49723180 GTATTGATACGTAATGAAAA
1 GTATCGATACGTAATGAAAA
49723200 GTATCGATAC
1 GTATCGATAC
49723210 TTATATAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (20 bp):
GTATCGATACGTAATGAAAA
Found at i:49725269 original size:17 final size:18
Alignment explanation
Indices: 49725236--49725270 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
49725226 ATTTGTTATG
*
49725236 TTTTATTTTATTATAATA
1 TTTTATTTAATTATAATA
49725254 TTTTATTTAATT-TAATA
1 TTTTATTTAATTATAATA
49725271 AAAAATTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTATTTAATTATAATA
Found at i:49740506 original size:50 final size:50
Alignment explanation
Indices: 49740447--49740575 Score: 141
Period size: 50 Copynumber: 2.6 Consensus size: 50
49740437 GAAACTATAA
* ** *
49740447 GAGAGGTCCCGTGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
1 GAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGAT
* * * * *
49740497 GAGAGGTCCCCCGTAAGACCTTGTCTGGAACATGGCATGGGCACCTATAT
1 GAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGAT
** * *
49740547 GAGAACTCCCTTGTAAGACCATATCTGGG
1 GAGAGGTCCCCTGTAAGACCATGTCTGGG
49740576 GTACGACATT
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 63 1.00
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.22
Consensus pattern (50 bp):
GAGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGAT
Found at i:49742647 original size:33 final size:34
Alignment explanation
Indices: 49742609--49742688 Score: 137
Period size: 34 Copynumber: 2.4 Consensus size: 34
49742599 CTTGTAATAT
49742609 AAAAAAGAAGTATACATTTAAAAAAATAAGGGAA
1 AAAAAAGAAGTATACATTTAAAAAAATAAGGGAA
49742643 AAAAAAGAAGTATACATTTAAAAAAATAAGGG-A
1 AAAAAAGAAGTATACATTTAAAAAAATAAGGGAA
*
49742676 GAAAAAGAA-TATA
1 AAAAAAGAAGTATA
49742689 AAAGTTGAGC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
32 4 0.09
33 9 0.20
34 32 0.71
ACGTcount: A:0.65, C:0.03, G:0.15, T:0.17
Consensus pattern (34 bp):
AAAAAAGAAGTATACATTTAAAAAAATAAGGGAA
Found at i:49747728 original size:76 final size:76
Alignment explanation
Indices: 49747630--49747808 Score: 250
Period size: 76 Copynumber: 2.4 Consensus size: 76
49747620 TGTGCCCTAT
* * *
49747630 ACTAGTCGGATAAACTGGCAATGTTTTGTGCCCAGAGCTAGTTGGATAAACCAACGATATCAAAT
1 ACTAGTCGGATAAACTGACAATGTTTTGTACCCAGAGCTAGTCGGATAAACCAACGATATCAAAT
49747695 GTATGCCCAGC
66 GTATGCCCAGC
* * * ** *
49747706 ACTAGTCGGGTAAACTGACAATGTTTTGTACCTAGCGCTAGTCGGATAAACTGACGATATCAATT
1 ACTAGTCGGATAAACTGACAATGTTTTGTACCCAGAGCTAGTCGGATAAACCAACGATATCAAAT
*
49747771 GTGTGCCCAGC
66 GTATGCCCAGC
* *
49747782 ACTAGTCGAATAAATTGACAATGTTTT
1 ACTAGTCGGATAAACTGACAATGTTTT
49747809 ACATTTCGTA
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 90 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (76 bp):
ACTAGTCGGATAAACTGACAATGTTTTGTACCCAGAGCTAGTCGGATAAACCAACGATATCAAAT
GTATGCCCAGC
Found at i:49747795 original size:40 final size:40
Alignment explanation
Indices: 49747656--49747800 Score: 129
Period size: 40 Copynumber: 3.7 Consensus size: 40
49747646 GGCAATGTTT
* ** *
49747656 TGTGCCCAG-AGCTAGTTGGATAAACCAACGATATCAAATG
1 TGTGCCCAGCA-CTAGTCGGATAAACTGACGATATCAATTG
* * * *
49747696 TATGCCCAGCACTAGTCGGGTAAACTGAC-A-AT--GTTT
1 TGTGCCCAGCACTAGTCGGATAAACTGACGATATCAATTG
* * *
49747732 TGTACCTAGCGCTAGTCGGATAAACTGACGATATCAATTG
1 TGTGCCCAGCACTAGTCGGATAAACTGACGATATCAATTG
* *
49747772 TGTGCCCAGCACTAGTCGAATAAATTGAC
1 TGTGCCCAGCACTAGTCGGATAAACTGAC
49747801 AATGTTTTAC
Statistics
Matches: 80, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
36 25 0.31
37 1 0.01
38 4 0.05
39 1 0.01
40 48 0.60
41 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (40 bp):
TGTGCCCAGCACTAGTCGGATAAACTGACGATATCAATTG
Found at i:49750858 original size:41 final size:43
Alignment explanation
Indices: 49750773--49750862 Score: 123
Period size: 41 Copynumber: 2.1 Consensus size: 43
49750763 GCATAAAGAA
** *
49750773 ATACGTATAAAGAGTATTTGGACAAGCTCCAGAAATTAGGTAT
1 ATACGTATAAAGAGTATTTAAACAAGCTCCAGAAATCAGGTAT
49750816 ATACGTATAAAGAGTA-TTAAAC-AGAC-CCAGAAATCAGGTAT
1 ATACGTATAAAGAGTATTTAAACAAG-CTCCAGAAATCAGGTAT
49750857 ATACGT
1 ATACGT
49750863 GACATAAGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
41 22 0.51
42 5 0.12
43 16 0.37
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (43 bp):
ATACGTATAAAGAGTATTTAAACAAGCTCCAGAAATCAGGTAT
Found at i:49754798 original size:17 final size:17
Alignment explanation
Indices: 49754776--49754809 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
49754766 TATTGTTTTT
49754776 GTCACTTGACTTTTGGC
1 GTCACTTGACTTTTGGC
49754793 GTCACTTGACTTTTGGC
1 GTCACTTGACTTTTGGC
49754810 TCTTTCTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.41
Consensus pattern (17 bp):
GTCACTTGACTTTTGGC
Found at i:49773996 original size:23 final size:22
Alignment explanation
Indices: 49773944--49773996 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
49773934 TTCACGTCTT
*
49773944 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
49773966 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
49773989 TTTCTTTT
1 TTTCTTTT
49773997 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:49788404 original size:18 final size:17
Alignment explanation
Indices: 49788378--49788428 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
49788368 TTTTGCTTCC
49788378 TTTATTTTTACTTTTAAT
1 TTTATTTTTA-TTTTAAT
* *
49788396 TTTACTTTTATTTTCAT
1 TTTATTTTTATTTTAAT
49788413 TGTTATTTTTATTTTA
1 T-TTATTTTTATTTTA
49788429 GTCTGTTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 7 0.25
18 21 0.75
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.73
Consensus pattern (17 bp):
TTTATTTTTATTTTAAT
Found at i:49788424 original size:6 final size:6
Alignment explanation
Indices: 49788378--49788427 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
49788368 TTTTGCTTCC
* * * * *
49788378 TTTATT TTTACT TTTAAT TTTACT TTTATT TTCATT GTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
49788426 TT
1 TT
49788428 AGTCTGTTGT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.18, C:0.06, G:0.02, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:49790935 original size:41 final size:41
Alignment explanation
Indices: 49790878--49790983 Score: 158
Period size: 41 Copynumber: 2.6 Consensus size: 41
49790868 CCGAAAATGT
* *
49790878 CGCAAAAGGTAAGGCAATAGCGGCATTTTTCCCATAAACGC
1 CGCAAAAGGTTAGGCAATAGCAGCATTTTTCCCATAAACGC
** *
49790919 CGCAAAAGGTTAGGCAATAGCAGTGTTTTTTCCATAAACGC
1 CGCAAAAGGTTAGGCAATAGCAGCATTTTTCCCATAAACGC
*
49790960 CACAAAAGGTTAGGCAATAGCAGC
1 CGCAAAAGGTTAGGCAATAGCAGC
49790984 GTTTGTTACA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (41 bp):
CGCAAAAGGTTAGGCAATAGCAGCATTTTTCCCATAAACGC
Found at i:49790996 original size:41 final size:40
Alignment explanation
Indices: 49790880--49790998 Score: 157
Period size: 41 Copynumber: 2.9 Consensus size: 40
49790870 GAAAATGTCG
* * * *
49790880 CAAAAGGTAAGGCAATAGCGGCATTTTTCCCATAAACGCCG
1 CAAAAGGTTAGGCAATAGCAGCGTTTTT-CCATAAACGCCA
*
49790921 CAAAAGGTTAGGCAATAGCAGTGTTTTTTCCATAAACGCCA
1 CAAAAGGTTAGGCAATAGCAGCG-TTTTTCCATAAACGCCA
*
49790962 CAAAAGGTTAGGCAATAGCAGCGTTTGTTACATAAAC
1 CAAAAGGTTAGGCAATAGCAGCGTTT-TTCCATAAAC
49790999 ACCGTGAATT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
40 3 0.04
41 61 0.88
42 5 0.07
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAAAGGTTAGGCAATAGCAGCGTTTTTCCATAAACGCCA
Found at i:49791153 original size:16 final size:17
Alignment explanation
Indices: 49791131--49791173 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
49791121 GATCCATTTT
*
49791131 CTTTCTTTCTCA-TCTT
1 CTTTCTTTCTCAGTCTG
*
49791147 TTTTCTTTCTCAGTCTG
1 CTTTCTTTCTCAGTCTG
49791164 CTTTCTTTCT
1 CTTTCTTTCT
49791174 TCGATTTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.05, C:0.28, G:0.05, T:0.63
Consensus pattern (17 bp):
CTTTCTTTCTCAGTCTG
Found at i:49791217 original size:15 final size:15
Alignment explanation
Indices: 49791197--49791225 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
49791187 TCTTTGCTCT
49791197 ATATCATCTCCCATG
1 ATATCATCTCCCATG
49791212 ATATCATCTCCCAT
1 ATATCATCTCCCAT
49791226 CCACATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.34, G:0.03, T:0.34
Consensus pattern (15 bp):
ATATCATCTCCCATG
Found at i:49791988 original size:25 final size:25
Alignment explanation
Indices: 49791959--49792006 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
49791949 TATTAGCTCA
49791959 ATTTTTATTATTTCATTTAACAATT
1 ATTTTTATTATTTCATTTAACAATT
49791984 ATTTTTATTATTTCATTTAACAA
1 ATTTTTATTATTTCATTTAACAA
49792007 AATCCTGTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTTTATTATTTCATTTAACAATT
Found at i:49794132 original size:19 final size:18
Alignment explanation
Indices: 49794110--49794153 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
49794100 TTTATTATTT
49794110 ATTTTAGTTTTGATTTTAA
1 ATTTTA-TTTTGATTTTAA
*
49794129 ATTTTTATTTTTATTTTAA
1 A-TTTTATTTTGATTTTAA
*
49794148 AATTTA
1 ATTTTA
49794154 AGATAACTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 13 0.59
20 5 0.23
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (18 bp):
ATTTTATTTTGATTTTAA
Found at i:49794152 original size:20 final size:20
Alignment explanation
Indices: 49794111--49794148 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
49794101 TTATTATTTA
49794111 TTTTAGTTTTGATTTTAAAT
1 TTTTAGTTTTGATTTTAAAT
*
49794131 TTTTA-TTTTTATTTTAAA
1 TTTTAGTTTTGATTTTAAA
49794149 ATTTAAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTAGTTTTGATTTTAAAT
Found at i:49794404 original size:19 final size:19
Alignment explanation
Indices: 49794362--49794418 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 19
49794352 TTTATCATTG
*
49794362 AAATAAATATTATTTAATTA
1 AAATAAAT-TTATTTAAGTA
49794382 AAATAAATTT-TTTAAAGTA
1 AAATAAATTTATTT-AAGTA
49794401 AAATAATATTTATCTTAA
1 AAATAA-ATTTAT-TTAA
49794419 TGTTAAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.09
19 12 0.38
20 12 0.38
21 3 0.09
22 2 0.06
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
AAATAAATTTATTTAAGTA
Found at i:49794418 original size:22 final size:20
Alignment explanation
Indices: 49794362--49794427 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 20
49794352 TTTATCATTG
49794362 AAATAAATATTATTT-AA-TTA
1 AAATAAAT-TT-TTTAAAGTTA
49794382 AAATAAATTTTTTAAAG-TA
1 AAATAAATTTTTTAAAGTTA
*
49794401 AAATAATATTTATCTTAATGTTA
1 AAATAA-ATTT-T-TTAAAGTTA
49794424 AAAT
1 AAAT
49794428 TATTTTAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
18 3 0.08
19 12 0.31
20 12 0.31
21 1 0.03
22 5 0.13
23 6 0.15
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (20 bp):
AAATAAATTTTTTAAAGTTA
Found at i:49794483 original size:25 final size:26
Alignment explanation
Indices: 49794450--49794500 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
49794440 TTTCATATAT
*
49794450 ATTATCATAAAAATAAATA-TATTTA
1 ATTACCATAAAAATAAATATTATTTA
*
49794475 ATTACCATAAAGATAAATATTATTTA
1 ATTACCATAAAAATAAATATTATTTA
49794501 TCTATATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 17 0.74
26 6 0.26
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (26 bp):
ATTACCATAAAAATAAATATTATTTA
Found at i:49794843 original size:43 final size:43
Alignment explanation
Indices: 49794777--49794933 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
49794767 TTTTAGAAAT
** * * *
49794777 AAACGCCGCTATCGACCATGACCTTTAGCGGCACTTTACCT-AC
1 AAACGCCGCTATAAATCAAGACCTTTAGCGGCACTTT-CCTCAA
* * * *
49794820 AAATGCTGCTATAAATCAAGACCTTTAGCGGCGCTTTTCTCAA
1 AAACGCCGCTATAAATCAAGACCTTTAGCGGCACTTTCCTCAA
* ** *
49794863 AAACGCCGCTATAGATCAAGACCTTTAGTAGCACTTT-TTCAA
1 AAACGCCGCTATAAATCAAGACCTTTAGCGGCACTTTCCTCAA
* **
49794905 TAAACGCCAC--TAGCTCAAGACCTTTAGCG
1 -AAACGCCGCTATAAATCAAGACCTTTAGCG
49794934 ACGCTCTAAT
Statistics
Matches: 92, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 16 0.17
42 6 0.07
43 70 0.76
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAAATCAAGACCTTTAGCGGCACTTTCCTCAA
Found at i:49795050 original size:16 final size:16
Alignment explanation
Indices: 49795031--49795064 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
49795021 AAATATTAAA
*
49795031 TATTAAAATCAAACAT
1 TATTAAAATCAAAAAT
*
49795047 TATTAATATCAAAAAT
1 TATTAAAATCAAAAAT
49795063 TA
1 TA
49795065 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATCAAAAAT
Found at i:49800803 original size:22 final size:23
Alignment explanation
Indices: 49800773--49800850 Score: 108
Period size: 22 Copynumber: 3.5 Consensus size: 23
49800763 ATCTAAACCC
49800773 TAAACCCCTAAATCACAACCCCT
1 TAAACCCCTAAATCACAACCCCT
49800796 TAAA-CCCTAAATCACAACCCCT
1 TAAACCCCTAAATCACAACCCCT
* * *
49800818 TAAA-CCTTAAACCCCAA-CCCT
1 TAAACCCCTAAATCACAACCCCT
49800839 TAAACCCCTAAA
1 TAAACCCCTAAA
49800851 ACCTAAATCC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
21 8 0.16
22 38 0.76
23 4 0.08
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (23 bp):
TAAACCCCTAAATCACAACCCCT
Found at i:49801369 original size:41 final size:41
Alignment explanation
Indices: 49801311--49801543 Score: 270
Period size: 41 Copynumber: 5.7 Consensus size: 41
49801301 TACATTTTGT
* *
49801311 GGCGCTTTACAAAAAACGCCGCTAAAGACCAGAGCATTAGC
1 GGCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGC
* * * *
49801352 GGCGCTTT-CTAAGAAACGCCGCTAAAAAACTAGAGCATTAAC
1 GGCGCTTTCCCAA-AAACGCCGCT-AAAGACCAGAGCATTAGC
** * *
49801394 GGCGCTTGACAAAAAACGCCGCTACAGACCAGAGCATTAGC
1 GGCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGC
* * *
49801435 GGCGCTTTCCCAAAAACGCCGCTAAAGGCTAGAGTATTAGC
1 GGCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGC
* * *
49801476 GACGCTTTCCCAAAAATGTCGCTAAAGACCAGAGCATTAGC
1 GGCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGC
* * *
49801517 AGCGCTTTTCCAAAAACGCCACTAAAG
1 GGCGCTTTCCCAAAAACGCCGCTAAAG
49801544 CCCCGAAAAC
Statistics
Matches: 160, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
40 3 0.02
41 122 0.76
42 32 0.20
43 3 0.02
ACGTcount: A:0.35, C:0.27, G:0.21, T:0.17
Consensus pattern (41 bp):
GGCGCTTTCCCAAAAACGCCGCTAAAGACCAGAGCATTAGC
Found at i:49801452 original size:83 final size:82
Alignment explanation
Indices: 49801311--49801542 Score: 304
Period size: 82 Copynumber: 2.8 Consensus size: 82
49801301 TACATTTTGT
*
49801311 GGCGCTTTACAAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCTAAGAAACGCCGCTA
1 GGCGCTTTACAAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCCAA-AAACGCCGCTA
49801376 AAAAACTAGAGCATTAAC
65 AAAAACTAGAGCATTAAC
* *
49801394 GGCGCTTGACAAAAAACGCCGCTACAGACCAGAGCATTAGCGGCGCTTTCCCAAAAACGCCGCT-
1 GGCGCTTTACAAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTT-CCAAAAACGCCGCTA
** * *
49801458 AAAGGCTAGAGTATTAGC
65 AAAAACTAGAGCATTAAC
* * * * * * *
49801476 GACGCTTTCCCAAAAATGTCGCTAAAGACCAGAGCATTAGCAGCGCTTTTCCAAAAACGCCACTA
1 GGCGCTTTACAAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGC-TTTCCAAAAACGCCGCTA
49801541 AA
65 AA
49801543 GCCCCGAAAA
Statistics
Matches: 130, Mismatches: 16, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
82 65 0.50
83 62 0.48
84 3 0.02
ACGTcount: A:0.35, C:0.27, G:0.21, T:0.17
Consensus pattern (82 bp):
GGCGCTTTACAAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTCCAAAAACGCCGCTAA
AAAACTAGAGCATTAAC
Found at i:49801682 original size:40 final size:40
Alignment explanation
Indices: 49801618--49801756 Score: 161
Period size: 40 Copynumber: 3.5 Consensus size: 40
49801608 GCTAATTCTC
*** ** *
49801618 ATTTTTAGCGGCGTTTTCCAAAAAGCGCCGCCAATACTTG
1 ATTTTTAGCGGCGTTTTTTTAAAAGCGCCGGTAATGCTTG
* * **
49801658 ATCTTTAACGGCGTTTTTTTAAAAGTACCGGTAATGCTTG
1 ATTTTTAGCGGCGTTTTTTTAAAAGCGCCGGTAATGCTTG
** *
49801698 ATTTTTAGCGGTATTTTTTTAAAAGCGCTGGTAATGCTTG
1 ATTTTTAGCGGCGTTTTTTTAAAAGCGCCGGTAATGCTTG
49801738 ATTTTTAGCGGCGTTTTTT
1 ATTTTTAGCGGCGTTTTTT
49801757 ATACAAATGC
Statistics
Matches: 80, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 80 1.00
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (40 bp):
ATTTTTAGCGGCGTTTTTTTAAAAGCGCCGGTAATGCTTG
Found at i:49807477 original size:43 final size:43
Alignment explanation
Indices: 49807424--49807509 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
49807414 TCTGCTAAAG
* ** *
49807424 TTAGTGGCGTTTGTGGGAAAAATGCCGCTAAAGGTCATGTTCT
1 TTAGCGGCGTTTGTGGGAAAAACACCACTAAAGGTCATGTTCT
*
49807467 TTAGCGGCGTTTGTGGGAAAAGCACCACTAAAGGTCATGTTCT
1 TTAGCGGCGTTTGTGGGAAAAACACCACTAAAGGTCATGTTCT
49807510 ATAACGGCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.30
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGGAAAAACACCACTAAAGGTCATGTTCT
Found at i:49808167 original size:17 final size:17
Alignment explanation
Indices: 49808142--49808177 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
49808132 ACCGCAAGTC
*
49808142 TTATTTTTATTTGATTA
1 TTATATTTATTTGATTA
*
49808159 TTATATTTATTTGTTTA
1 TTATATTTATTTGATTA
49808176 TT
1 TT
49808178 TCTCCACCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (17 bp):
TTATATTTATTTGATTA
Found at i:49809702 original size:20 final size:21
Alignment explanation
Indices: 49809663--49809702 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
49809653 ATGAGAAAGA
*
49809663 TTATATGATAATGTTGTGAGT
1 TTATATGATAAAGTTGTGAGT
*
49809684 TTATTTGATAAAG-TGTGAG
1 TTATATGATAAAGTTGTGAG
49809703 AAAGAAAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (21 bp):
TTATATGATAAAGTTGTGAGT
Found at i:49812125 original size:15 final size:16
Alignment explanation
Indices: 49812105--49812141 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
49812095 AACGTTATTG
*
49812105 AAAAAATTATTT-TTA
1 AAAAAATTATTTATGA
49812120 AAAAAA-TATTTATGA
1 AAAAAATTATTTATGA
49812135 AAAAAAT
1 AAAAAAT
49812142 CTTTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
AAAAAATTATTTATGA
Found at i:49818477 original size:24 final size:25
Alignment explanation
Indices: 49818430--49818481 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
49818420 TCAATAAAAT
*
49818430 TATTTTAATTAATAATAAAATTAAA
1 TATTATAATTAATAATAAAATTAAA
* *
49818455 TATTATAATT-ATAATATATTTAAA
1 TATTATAATTAATAATAAAATTAAA
49818479 TAT
1 TAT
49818482 GTTTACAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 15 0.62
25 9 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
TATTATAATTAATAATAAAATTAAA
Found at i:49818945 original size:22 final size:21
Alignment explanation
Indices: 49818912--49818953 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
49818902 ACAATTAGTA
*
49818912 TTATATGATTATGGTATATTAG
1 TTATATGATTAT-ATATATTAG
49818934 TTATAT-ATTTATATATATTA
1 TTATATGA-TTATATATATTA
49818954 TAATAACATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.55
Consensus pattern (21 bp):
TTATATGATTATATATATTAG
Found at i:49839738 original size:30 final size:30
Alignment explanation
Indices: 49839704--49839771 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
49839694 TTGGACTTCT
** *
49839704 TTGATTCTTTTTAATAGTATAGGGACTAAA
1 TTGATTCCATTTAATAATATAGGGACTAAA
*
49839734 TTGA-TCCATTTAATAATATAGGGACTAAT
1 TTGATTCCATTTAATAATATAGGGACTAAA
49839763 TTGA-TCCAT
1 TTGATTCCAT
49839772 ACCCTATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 30 0.88
30 4 0.12
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (30 bp):
TTGATTCCATTTAATAATATAGGGACTAAA
Found at i:49839753 original size:29 final size:29
Alignment explanation
Indices: 49839713--49839771 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
49839703 TTTGATTCTT
*
49839713 TTTAATAGTATAGGGACTAAATTGATCCA
1 TTTAATAATATAGGGACTAAATTGATCCA
*
49839742 TTTAATAATATAGGGACTAATTTGATCCA
1 TTTAATAATATAGGGACTAAATTGATCCA
49839771 T
1 T
49839772 ACCCTATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (29 bp):
TTTAATAATATAGGGACTAAATTGATCCA
Found at i:49839784 original size:31 final size:29
Alignment explanation
Indices: 49839715--49839789 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 29
49839705 TGATTCTTTT
* *
49839715 TAATAGTATAGGGACTAAATTGATCCATT
1 TAATAATATAGGGACTAAATTGATCCATC
*
49839744 TAATAATATAGGGACTAATTTGATCCATACCC
1 TAATAATATAGGGACTAAATTGATCCAT---C
49839776 T-ATAATATAGGGAC
1 TAATAATATAGGGAC
49839790 CTATCAAGTA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
29 26 0.65
31 13 0.32
32 1 0.03
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (29 bp):
TAATAATATAGGGACTAAATTGATCCATC
Found at i:49845519 original size:14 final size:15
Alignment explanation
Indices: 49845500--49845528 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
49845490 TTATTTTTTT
49845500 AAAATTAAA-ATTAA
1 AAAATTAAACATTAA
49845514 AAAATTAAACATTAA
1 AAAATTAAACATTAA
49845529 CGGATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATTAAACATTAA
Found at i:49847706 original size:4 final size:4
Alignment explanation
Indices: 49847697--49847722 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
49847687 AAAAAATAGC
49847697 AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AA
49847723 TGGAATAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:49851785 original size:29 final size:27
Alignment explanation
Indices: 49851724--49851804 Score: 92
Period size: 29 Copynumber: 2.9 Consensus size: 27
49851714 GGAAAGAGGG
* *
49851724 TTTTAAAATTTAAAA-ATTATTATTCT
1 TTTTAAATTTTAAAATATTATTATTAT
49851750 TTCTTAAATTTTAAAATAGTTATTATTAT
1 TT-TTAAATTTTAAAATA-TTATTATTAT
*
49851779 CTTTTAATTTTTAAAATAATTATTAT
1 -TTTTAAATTTTAAAAT-ATTATTAT
49851805 AATAATAAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
26 2 0.04
27 12 0.26
28 1 0.02
29 29 0.62
30 3 0.06
ACGTcount: A:0.40, C:0.04, G:0.01, T:0.56
Consensus pattern (27 bp):
TTTTAAATTTTAAAATATTATTATTAT
Found at i:49865443 original size:4 final size:4
Alignment explanation
Indices: 49865434--49865460 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
49865424 CAACTCAGGA
49865434 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
49865461 ACGAAAGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:49873841 original size:3 final size:3
Alignment explanation
Indices: 49873833--49873860 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
49873823 AACCTCTGCT
49873833 TGG TGG TGG TGG TGG TGG TGG TGG TGG T
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG T
49873861 AGTGATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.64, T:0.36
Consensus pattern (3 bp):
TGG
Found at i:49882683 original size:15 final size:16
Alignment explanation
Indices: 49882663--49882692 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
49882653 TCAATAGGAG
49882663 TGTATTGTGT-ATGTT
1 TGTATTGTGTGATGTT
49882678 TGTATTGTGTGATGT
1 TGTATTGTGTGATGT
49882693 CCTTTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (16 bp):
TGTATTGTGTGATGTT
Found at i:49884885 original size:3 final size:3
Alignment explanation
Indices: 49884865--49884901 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
49884855 AAGTACTTTC
* *
49884865 TAT TTT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
49884902 TCAATATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:49885066 original size:23 final size:23
Alignment explanation
Indices: 49885040--49885083 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
49885030 ATATATTTCC
49885040 GTTTTAT-AATATTTGTATAGTTT
1 GTTTTATGAATATTT-TATAGTTT
*
49885063 GTTTTATGTATATTTTATAGT
1 GTTTTATGAATATTTTATAGT
49885084 CCAAATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.25, C:0.00, G:0.14, T:0.61
Consensus pattern (23 bp):
GTTTTATGAATATTTTATAGTTT
Found at i:49885219 original size:14 final size:14
Alignment explanation
Indices: 49885202--49885249 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
49885192 TATTAATATA
* *
49885202 TATTTACTTTTTTT
1 TATTTACCTTTATT
49885216 TATTTACCTTTATT
1 TATTTACCTTTATT
49885230 TATTT-CCATTTATT
1 TATTTACC-TTTATT
*
49885244 TTTTTA
1 TATTTA
49885250 GATACCTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 27 0.93
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (14 bp):
TATTTACCTTTATT
Found at i:49886037 original size:19 final size:18
Alignment explanation
Indices: 49886011--49886048 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
49886001 GACATTCCCT
49886011 ATTTGTTT-TTTCCTATTC
1 ATTTGTTTATTT-CTATTC
49886029 ATTTCGTTTATTTCTATTC
1 ATTT-GTTTATTTCTATTC
49886048 A
1 A
49886049 AACACGTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 11 0.61
20 3 0.17
ACGTcount: A:0.16, C:0.16, G:0.05, T:0.63
Consensus pattern (18 bp):
ATTTGTTTATTTCTATTC
Found at i:49895508 original size:273 final size:274
Alignment explanation
Indices: 49895018--49895567 Score: 777
Period size: 273 Copynumber: 2.0 Consensus size: 274
49895008 TGGTATAGTG
*
49895018 AGGAACAAAGGAATAAAAAATAGCTTTAAAGAGGAAAAAATAGTACATGGCCATGTGAGCCACAC
1 AGGAACAAAGGAATAAAAAATAGCTTTAAAGAGGAAAAAACAGTACATGGCCATGTGAGCCACAC
* *
49895083 GACCATGTGGAATCAGTCTGGCCGTGTGTGATAAAAAAGAGGTAAAAATAAGCCTAGTATCCATA
66 GACCATGTGGAATCAGTCAGACCGTGTGTGATAAAAAAGAGGTAAAAATAAGCCTAGTATCCATA
* ** * * *
49895148 TGGCCTAGGACACGCCCGTGTGTCACACACGATCGTGTGAAATGATCGTTCGCTTTTCCCACGCC
131 TGACCTAGGACACGCCAATGTGTCACACACGACCGTGTGAAATGATCATTCGCTTCTCCCACGCC
* * * * *
49895213 CGTGTGTGAGGGCATGTGGATCACATGGT-CTATCACATGCTCGTGTTCTAGGCCGTGTGTCTCA
196 CGTGTGTGAGGGCACGTGGATCACACGGTGC-ACCACATGCCCGTGTTCTAGGCCGTATGTCTCA
* *
49895277 CACGGCCATGTCTCT
260 CAAGACCATGTCTCT
49895292 AGGAACAAAGGAATAAAAAATAGCTTTAAAGAGGAAAAAAACAGTACATGGCCATGTGAGCCACA
1 AGGAACAAAGGAATAAAAAATAGCTTTAAAGAGG-AAAAAACAGTACATGGCCATGTGAGCCACA
* * * *
49895357 CGACCCTGTGGAATTAGTCAGATCGTGTGTGAT-AAAAATAGGTAAAAATAAGCC-AGTATCCAT
65 CGACCATGTGGAATCAGTCAGACCGTGTGTGATAAAAAAGAGGTAAAAATAAGCCTAGTATCCAT
* * * **
49895420 ACT-ACTTAGGGCACGCCAATGTGTCACATAC-AGCCGTGTGCGATGATCATTCGCTTCTCCCAC
130 A-TGACCTAGGACACGCCAATGTGTCACACACGA-CCGTGTGAAATGATCATTCGCTTCTCCCAC
* * *
49895483 GCTCGTGTGTGAGGGCGCGTGGATCACACGGTGCACCACATGCCCGTGTTCTAGGCTGTATGTCT
193 GCCCGTGTGTGAGGGCACGTGGATCACACGGTGCACCACATGCCCGTGTTCTAGGCCGTATGTCT
49895548 CACAAGACCATGTCTCT
258 CACAAGACCATGTCTCT
49895565 AGG
1 AGG
49895568 GCGTGTAACT
Statistics
Matches: 244, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
272 1 0.00
273 130 0.53
274 56 0.23
275 57 0.23
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (274 bp):
AGGAACAAAGGAATAAAAAATAGCTTTAAAGAGGAAAAAACAGTACATGGCCATGTGAGCCACAC
GACCATGTGGAATCAGTCAGACCGTGTGTGATAAAAAAGAGGTAAAAATAAGCCTAGTATCCATA
TGACCTAGGACACGCCAATGTGTCACACACGACCGTGTGAAATGATCATTCGCTTCTCCCACGCC
CGTGTGTGAGGGCACGTGGATCACACGGTGCACCACATGCCCGTGTTCTAGGCCGTATGTCTCAC
AAGACCATGTCTCT
Found at i:49895740 original size:27 final size:28
Alignment explanation
Indices: 49895701--49895779 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 28
49895691 AAATTTAATT
* *
49895701 TTTTTCTTTTTTTAATTTTTTTT-CAAGA-
1 TTTTT-TTCTTTT-ATTTTTTTTCCAAAAG
*
49895729 TTTTTTTCTTTTCTTTTTTTTCCAAAAG
1 TTTTTTTCTTTTATTTTTTTTCCAAAAG
* *
49895757 GTTTTTTCTTTTCTTTTCTTTTC
1 TTTTTTTCTTTTATTTT-TTTTC
49895780 TTTTTTCAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
26 8 0.18
27 10 0.23
28 21 0.48
29 5 0.11
ACGTcount: A:0.11, C:0.13, G:0.04, T:0.72
Consensus pattern (28 bp):
TTTTTTTCTTTTATTTTTTTTCCAAAAG
Found at i:49895747 original size:28 final size:28
Alignment explanation
Indices: 49895697--49895779 Score: 87
Period size: 30 Copynumber: 2.9 Consensus size: 28
49895687 AAAAAAATTT
* *
49895697 AATTTTTTTCTTTTTTTAATTTTTTTTCAA
1 AATTTTTTTCTTTTCTT--TTTTTTTCCAA
*
49895727 GATTTTTTTCTTTTC-TTTTTTTTCCAA
1 AATTTTTTTCTTTTCTTTTTTTTTCCAA
* *
49895754 AAGGTTTTTTCTTTTCTTTTCTTTTC
1 AA-TTTTTTTCTTTTCTTTTTTTTTC
49895780 TTTTTTCAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 11 0.24
28 12 0.27
29 9 0.20
30 13 0.29
ACGTcount: A:0.13, C:0.12, G:0.04, T:0.71
Consensus pattern (28 bp):
AATTTTTTTCTTTTCTTTTTTTTTCCAA
Found at i:49900495 original size:25 final size:25
Alignment explanation
Indices: 49900460--49900546 Score: 104
Period size: 25 Copynumber: 3.5 Consensus size: 25
49900450 AACACACCAT
49900460 AGCTCGTATGAGCTTCCCGTTATAC
1 AGCTCGTATGAGCTTCCCGTTATAC
* *
49900485 AGCTCGCATGAGCTTCCCGTTATTC
1 AGCTCGTATGAGCTTCCCGTTATAC
* * * **
49900510 AGCTAGGAGGAGCTTCCTATT-TAC
1 AGCTCGTATGAGCTTCCCGTTATAC
49900534 AGCTCGTATGAGC
1 AGCTCGTATGAGC
49900547 ATACATGAAT
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 12 0.24
25 39 0.76
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (25 bp):
AGCTCGTATGAGCTTCCCGTTATAC
Found at i:49905965 original size:43 final size:43
Alignment explanation
Indices: 49905904--49905989 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
49905894 ACCGAAATGG
49905904 GTCGGTGGATAGTGTGAGTGATCTCCGCCAAATTTCCAACCCA
1 GTCGGTGGATAGTGTGAGTGATCTCCGCCAAATTTCCAACCCA
49905947 GTCGGTGGATAGTGTGAGTGATCTCCGCCAAATTTCCAACCCA
1 GTCGGTGGATAGTGTGAGTGATCTCCGCCAAATTTCCAACCCA
49905990 ACGAGCCTCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (43 bp):
GTCGGTGGATAGTGTGAGTGATCTCCGCCAAATTTCCAACCCA
Found at i:49906627 original size:26 final size:26
Alignment explanation
Indices: 49906476--49906648 Score: 89
Period size: 24 Copynumber: 7.0 Consensus size: 26
49906466 GGGCAATAAT
* *
49906476 ACGGAAAGCTCACAAAGAG-CTTATA
1 ACGGGAAGCTCACAAAGAGCCATATA
* * *
49906501 ACGGGTAGCTC-CAGAGAGCAAT-TA
1 ACGGGAAGCTCACAAAGAGCCATATA
* * *
49906525 ACGGGTAGCTC-CGAAGAGCAAT-TA
1 ACGGGAAGCTCACAAAGAGCCATATA
* * * *
49906549 ATC-AGAAGCAC-CAGATAGCCATATA
1 A-CGGGAAGCTCACAAAGAGCCATATA
* * **
49906574 ACGGGAAGTTTA-AGCGAG-CA-ATA
1 ACGGGAAGCTCACAAAGAGCCATATA
*
49906597 ACGGGAAGCTCACAGAGAGCC-TATA
1 ACGGGAAGCTCACAAAGAGCCATATA
*
49906622 ATCGGGAAGCTCTCAAAGAGCCATATA
1 A-CGGGAAGCTCACAAAGAGCCATATA
49906649 CGAGATACTC
Statistics
Matches: 113, Mismatches: 25, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
23 13 0.12
24 51 0.45
25 27 0.24
26 18 0.16
27 4 0.04
ACGTcount: A:0.38, C:0.21, G:0.25, T:0.16
Consensus pattern (26 bp):
ACGGGAAGCTCACAAAGAGCCATATA
Found at i:49910171 original size:36 final size:36
Alignment explanation
Indices: 49910116--49910185 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
49910106 TACTAGCTAA
* * *
49910116 ATGTAGTGTGTAGCGATATCATTAGGGCTTTTCTAG
1 ATGTAGTGTGTAACAATATCATTAGGACTTTTCTAG
*
49910152 ATGTTGTGTGTAACAATATCATTAGGACTTTTCT
1 ATGTAGTGTGTAACAATATCATTAGGACTTTTCT
49910186 TGGTAGAGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.24, C:0.11, G:0.23, T:0.41
Consensus pattern (36 bp):
ATGTAGTGTGTAACAATATCATTAGGACTTTTCTAG
Found at i:49910219 original size:16 final size:16
Alignment explanation
Indices: 49910200--49910235 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
49910190 AGAGTGGAAA
49910200 AAAATTAGAAAAATGG
1 AAAATTAGAAAAATGG
* *
49910216 AAAATTATAAAGATGG
1 AAAATTAGAAAAATGG
49910232 AAAA
1 AAAA
49910236 ATAAAAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.17, T:0.19
Consensus pattern (16 bp):
AAAATTAGAAAAATGG
Found at i:49910243 original size:16 final size:16
Alignment explanation
Indices: 49910208--49910245 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
49910198 AAAAAATTAG
*
49910208 AAAA-ATGGAAAATTA
1 AAAAGATGGAAAAATA
*
49910223 TAAAGATGGAAAAATA
1 AAAAGATGGAAAAATA
49910239 AAAAGAT
1 AAAAGAT
49910246 AAAAAAAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.66, C:0.00, G:0.16, T:0.18
Consensus pattern (16 bp):
AAAAGATGGAAAAATA
Found at i:49931952 original size:16 final size:16
Alignment explanation
Indices: 49931931--49931965 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
49931921 GTCATATAAT
49931931 ATATATACACACACGG
1 ATATATACACACACGG
* *
49931947 ATATATATATACACGG
1 ATATATACACACACGG
49931963 ATA
1 ATA
49931966 ATGTGAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.26
Consensus pattern (16 bp):
ATATATACACACACGG
Found at i:49933225 original size:80 final size:79
Alignment explanation
Indices: 49933087--49933247 Score: 304
Period size: 80 Copynumber: 2.0 Consensus size: 79
49933077 TTTAAACAGG
49933087 CCTTATTGTTTTGCCTAAACCTATTTTCGAGTCTATACTTTATTAAAATTCTGACACTTTTCAAG
1 CCTTATTGTTTTGCCTAAACCTATTTTCGAGTCTATACTTTATTAAAATTCTGACACTTTTCAAG
49933152 TTGACCCCGACCCAA
66 -TGACCCCGACCCAA
*
49933167 CCTTATTGTTTTGCCTAAACCTATTTTCGAGTCTATACTTTATTAAAATTCTGCCACTTTTCAAG
1 CCTTATTGTTTTGCCTAAACCTATTTTCGAGTCTATACTTTATTAAAATTCTGACACTTTTCAAG
49933232 TGACCCCGACCCAA
66 TGACCCCGACCCAA
49933246 CC
1 CC
49933248 CGATTTATGG
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
79 16 0.20
80 64 0.80
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38
Consensus pattern (79 bp):
CCTTATTGTTTTGCCTAAACCTATTTTCGAGTCTATACTTTATTAAAATTCTGACACTTTTCAAG
TGACCCCGACCCAA
Found at i:49933853 original size:23 final size:23
Alignment explanation
Indices: 49933807--49933861 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
49933797 AATTATTTGT
* *
49933807 TAAATTT-AAAAAATAAAGGGAC
1 TAAATTTCTAAAAATAAAAGGAC
*
49933829 TAAATTTCTAAAAATAAAAGTAC
1 TAAATTTCTAAAAATAAAAGGAC
49933852 T-AA-TTCTAAA
1 TAAATTTCTAAA
49933862 TTTCAAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.24
22 9 0.31
23 13 0.45
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.29
Consensus pattern (23 bp):
TAAATTTCTAAAAATAAAAGGAC
Found at i:49937039 original size:24 final size:24
Alignment explanation
Indices: 49937012--49937059 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
49937002 AAGGCTTAAA
49937012 ACCCAATTCTTTGACTCCATCCAT
1 ACCCAATTCTTTGACTCCATCCAT
*
49937036 ACCCAATTCTTTGATTCCATCCAT
1 ACCCAATTCTTTGACTCCATCCAT
49937060 GCCTTCTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.35, G:0.04, T:0.35
Consensus pattern (24 bp):
ACCCAATTCTTTGACTCCATCCAT
Found at i:49942862 original size:22 final size:23
Alignment explanation
Indices: 49942800--49942864 Score: 71
Period size: 22 Copynumber: 2.9 Consensus size: 23
49942790 TTCAATATAA
49942800 AACTAATAATTTAATAATCAAGT
1 AACTAATAATTTAATAATCAAGT
* * * * *
49942823 TA-TAACAAATAAAGAATCAA-T
1 AACTAATAATTTAATAATCAAGT
49942844 AACTAATAATTTAATAATCAA
1 AACTAATAATTTAATAATCAA
49942865 AGTTTTGTAA
Statistics
Matches: 31, Mismatches: 10, Indels: 3
0.70 0.23 0.07
Matches are distributed among these distances:
21 2 0.06
22 28 0.90
23 1 0.03
ACGTcount: A:0.57, C:0.09, G:0.03, T:0.31
Consensus pattern (23 bp):
AACTAATAATTTAATAATCAAGT
Found at i:49943281 original size:27 final size:27
Alignment explanation
Indices: 49943251--49943302 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
49943241 GGCCAATCAT
*
49943251 ATTGGTGGCACCAATGGTGCCAAAGTG
1 ATTGGCGGCACCAATGGTGCCAAAGTG
49943278 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAATGGTGCCAAAG
49943303 GACTAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.27, C:0.21, G:0.33, T:0.19
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGTG
Found at i:49943402 original size:19 final size:19
Alignment explanation
Indices: 49943375--49943444 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
49943365 CAACTCATTT
*
49943375 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
49943394 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
49943412 TTCTCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
49943431 TTTTAATTTAATAA
1 TTTTAATTTAATAA
49943445 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:49943423 original size:37 final size:37
Alignment explanation
Indices: 49943380--49943450 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
49943370 CATTTTTTTT
49943380 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
49943417 ATTTAATAACTCTATTTTAATTTAATAAACTATT
1 ATTTAATAACTCTATTTTAATTTAATAAACTATT
49943451 AAGTAATACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTCTC
Found at i:49953925 original size:14 final size:14
Alignment explanation
Indices: 49953908--49953954 Score: 76
Period size: 14 Copynumber: 3.3 Consensus size: 14
49953898 TAAAAAAATG
49953908 TTATTAAATTATTA
1 TTATTAAATTATTA
*
49953922 TTATTAAAATTAGTA
1 TTATT-AAATTATTA
49953937 TTATTAAATTATTA
1 TTATTAAATTATTA
49953951 TTAT
1 TTAT
49953955 ATTTAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TTATTAAATTATTA
Found at i:49955313 original size:21 final size:21
Alignment explanation
Indices: 49955289--49955353 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
49955279 ACGTGTCATA
49955289 TATCAGGCACCTCGTGTGTCG
1 TATCAGGCACCTCGTGTGTCG
*
49955310 TATCAGGCACCTCGTGTGTTG
1 TATCAGGCACCTCGTGTGTCG
* **
49955331 TTTCAGGCA-CTTATGTGTCG
1 TATCAGGCACCTCGTGTGTCG
49955351 TAT
1 TAT
49955354 ACTGATCAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
20 10 0.26
21 28 0.74
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.35
Consensus pattern (21 bp):
TATCAGGCACCTCGTGTGTCG
Found at i:49958314 original size:64 final size:64
Alignment explanation
Indices: 49958213--49958341 Score: 177
Period size: 64 Copynumber: 2.0 Consensus size: 64
49958203 CGAGCATCCC
* * * * * *
49958213 GATCGGTAGTGATTCTACATGTGTTGTGGACATACCGCAGCTTTTTGTGAACGTCCTGTTATAT
1 GATCGGTAGTGATCCTACATATGTTGCGGACATACCGCAACTCTTTATGAACGTCCTGTTATAT
* * *
49958277 GATCGGTAGTGATCCTGCATATGTTGCGGACATACCGCAACTCTTTATTAGCGTCCTGTTATAT
1 GATCGGTAGTGATCCTACATATGTTGCGGACATACCGCAACTCTTTATGAACGTCCTGTTATAT
49958341 G
1 G
49958342 GCTCTTTAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (64 bp):
GATCGGTAGTGATCCTACATATGTTGCGGACATACCGCAACTCTTTATGAACGTCCTGTTATAT
Found at i:49958438 original size:26 final size:26
Alignment explanation
Indices: 49958408--49958536 Score: 136
Period size: 26 Copynumber: 5.0 Consensus size: 26
49958398 GAGCTCCTGA
*
49958408 TTAAAGGCTCTTGGTGAGCTTCCCGT
1 TTAAAGGCTCTTCGTGAGCTTCCCGT
49958434 TTAAAGGCTCTTCGTGAGCTTCCCGT
1 TTAAAGGCTCTTCGTGAGCTTCCCGT
* * *
49958460 TTAAAGGCTCTTCGCGAGCTTCCTGA
1 TTAAAGGCTCTTCGTGAGCTTCCCGT
* * * * * *
49958486 TTAAAAGTTCTTTGTGAACTTCCTGA
1 TTAAAGGCTCTTCGTGAGCTTCCCGT
* *
49958512 TT-ATGGCTCTT-ATGAGCTTCCCGT
1 TTAAAGGCTCTTCGTGAGCTTCCCGT
49958536 T
1 T
49958537 ATATAGCCTG
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
24 10 0.11
25 6 0.07
26 71 0.82
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (26 bp):
TTAAAGGCTCTTCGTGAGCTTCCCGT
Found at i:49958578 original size:23 final size:22
Alignment explanation
Indices: 49958549--49958601 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
49958539 ATAGCCTGGA
49958549 TAAGCTTCCTGATAGGCACTTTG
1 TAAGCTTCC-GATAGGCACTTTG
* *
49958572 TAAGCTTTCCGATATGCTCTTTG
1 TAAGC-TTCCGATAGGCACTTTG
*
49958595 TGAGCTT
1 TAAGCTT
49958602 TTTAATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 2 0.08
23 20 0.77
24 4 0.15
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (22 bp):
TAAGCTTCCGATAGGCACTTTG
Found at i:49959860 original size:27 final size:27
Alignment explanation
Indices: 49959829--49959915 Score: 174
Period size: 27 Copynumber: 3.2 Consensus size: 27
49959819 TCTTAGCCGT
49959829 GTGTGACACATGGCCTAGTAAAAGGGC
1 GTGTGACACATGGCCTAGTAAAAGGGC
49959856 GTGTGACACATGGCCTAGTAAAAGGGC
1 GTGTGACACATGGCCTAGTAAAAGGGC
49959883 GTGTGACACATGGCCTAGTAAAAGGGC
1 GTGTGACACATGGCCTAGTAAAAGGGC
49959910 GTGTGA
1 GTGTGA
49959916 TTTGGCTGTC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.29, C:0.17, G:0.34, T:0.20
Consensus pattern (27 bp):
GTGTGACACATGGCCTAGTAAAAGGGC
Found at i:49964970 original size:20 final size:20
Alignment explanation
Indices: 49964945--49964985 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
49964935 AAATGTAGTG
49964945 TATTTTAAAAATAAAAAATA
1 TATTTTAAAAATAAAAAATA
49964965 TATTTTAAAAATAAAAAATA
1 TATTTTAAAAATAAAAAATA
49964985 T
1 T
49964986 GGTTTATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
TATTTTAAAAATAAAAAATA
Found at i:49964991 original size:20 final size:20
Alignment explanation
Indices: 49964948--49964991 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
49964938 TGTAGTGTAT
*
49964948 TTTAAAAATAAAAAATATAT
1 TTTAAAAATAAAAAATATAG
*
49964968 TTTAAAAATAAAAAATATGG
1 TTTAAAAATAAAAAATATAG
49964988 TTTA
1 TTTA
49964992 TATTCGAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
TTTAAAAATAAAAAATATAG
Found at i:49965004 original size:9 final size:9
Alignment explanation
Indices: 49964992--49965019 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
49964982 ATATGGTTTA
49964992 TATTCGAAT
1 TATTCGAAT
49965001 TATTCGAAT
1 TATTCGAAT
49965010 TATTCGAAT
1 TATTCGAAT
49965019 T
1 T
49965020 CGAAAATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:49968445 original size:23 final size:24
Alignment explanation
Indices: 49968418--49968538 Score: 91
Period size: 25 Copynumber: 4.8 Consensus size: 24
49968408 CTTAATAATT
* *
49968418 AAAAACTTGATGGAAAACTTTATGA
1 AAAAACTTGATGAAAAACTTTA-AA
*
49968443 AAAGACTTGATGAAAAAC-TTAAA
1 AAAAACTTGATGAAAAACTTTAAA
* *
49968466 AAGAACTTGATGCAAAACTTAATAAA
1 AAAAACTTGATGAAAAACTT--TAAA
* *
49968492 AAAAACCTTGATAATTAAAAACTTGATAA
1 AAAAA-CTTG---ATGAAAAACTTTA-AA
*
49968521 AAGAACTTGATGAAAAAC
1 AAAAACTTGATGAAAAAC
49968539 ACTTGAAGAA
Statistics
Matches: 76, Mismatches: 12, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
23 16 0.21
24 4 0.05
25 24 0.32
26 8 0.11
27 4 0.05
28 5 0.07
29 6 0.08
30 9 0.12
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (24 bp):
AAAAACTTGATGAAAAACTTTAAA
Found at i:49968453 original size:25 final size:23
Alignment explanation
Indices: 49968418--49968485 Score: 77
Period size: 23 Copynumber: 2.9 Consensus size: 23
49968408 CTTAATAATT
*
49968418 AAAA-ACTTGATGGAAAACTTTA
1 AAAAGACTTGATGAAAAACTTTA
49968440 TGAAAAGACTTGATGAAAAAC-TTA
1 --AAAAGACTTGATGAAAAACTTTA
*
49968464 AAAAGAACTTGATGCAAAACTT
1 AAAAG-ACTTGATGAAAAACTT
49968486 AATAAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.13
23 13 0.33
24 8 0.21
25 13 0.33
ACGTcount: A:0.50, C:0.10, G:0.15, T:0.25
Consensus pattern (23 bp):
AAAAGACTTGATGAAAAACTTTA
Found at i:49968542 original size:14 final size:13
Alignment explanation
Indices: 49968418--49968549 Score: 80
Period size: 12 Copynumber: 10.2 Consensus size: 13
49968408 CTTAATAATT
49968418 AAAAACTTGATG-
1 AAAAACTTGATGA
* *
49968430 GAAAACTTTATGA
1 AAAAACTTGATGA
*
49968443 AAAGACTTGATG-
1 AAAAACTTGATGA
49968455 AAAAACTT-A--A
1 AAAAACTTGATGA
49968465 AAAGAACTTGATG-
1 AAA-AACTTGATGA
* * *
49968478 CAAAACTTAATAAA
1 AAAAACTTGAT-GA
*
49968492 AAAAACCTTGATAA
1 AAAAA-CTTGATGA
49968506 TTAAAAACTTGAT-A
1 --AAAAACTTGATGA
49968520 AAAGAACTTGATGA
1 AAA-AACTTGATGA
*
49968534 AAAACACTTGAAGA
1 AAAA-ACTTGATGA
49968548 AA
1 AA
49968550 GAAAACACTT
Statistics
Matches: 94, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
10 3 0.03
11 6 0.06
12 28 0.30
13 20 0.21
14 21 0.22
15 11 0.12
16 5 0.05
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.23
Consensus pattern (13 bp):
AAAAACTTGATGA
Found at i:49971895 original size:6 final size:6
Alignment explanation
Indices: 49971880--49971942 Score: 76
Period size: 6 Copynumber: 10.3 Consensus size: 6
49971870 GTTTCTCCGC
49971880 AAAAAT -AAAAT AAAAAT AAAAAT AAAAAT -AAAAT AAAATAGT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-A-T AAAAAT
*
49971928 AAATAAT AATAAT AA
1 AAA-AAT AAAAAT AA
49971943 TAGGAAAATT
Statistics
Matches: 51, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
5 10 0.20
6 29 0.57
7 7 0.14
8 5 0.10
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:49971910 original size:23 final size:25
Alignment explanation
Indices: 49971896--49971963 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
49971886 AAAATAAAAA
49971896 TAAAAATAAAAATAAAATAAAATAG
1 TAAAAATAAAAATAAAATAAAATAG
49971921 TAAAAAT--AAATAATAATAATAATAG
1 TAAAAATAAAAATAA-AATAA-AATAG
* * *
49971946 GAAAATTAAAATTAAAAT
1 TAAAAATAAAAATAAAAT
49971964 GTTTTTTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
23 6 0.17
24 5 0.14
25 17 0.47
26 3 0.08
27 5 0.14
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (25 bp):
TAAAAATAAAAATAAAATAAAATAG
Done.