Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 160 of 211
Found at i:50223570 original size:25 final size:26
Alignment explanation
Indices: 50223515--50223582 Score: 79
Period size: 25 Copynumber: 2.7 Consensus size: 26
50223505 CATCCCATTG
50223515 TATGGCTCTCATGAGC-TTCACGATA
1 TATGGCTCTCATGAGCTTTCACGATA
*
50223540 TTTGGCTCTCATGAGCTTTC-CGAT-
1 TATGGCTCTCATGAGCTTTCACGATA
**
50223564 TAATGGCTCTTTTGAGCTT
1 T-ATGGCTCTCATGAGCTT
50223583 CTCGTTTACG
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 33 0.89
26 3 0.08
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.40
Consensus pattern (26 bp):
TATGGCTCTCATGAGCTTTCACGATA
Found at i:50223673 original size:25 final size:25
Alignment explanation
Indices: 50223645--50223696 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
50223635 ATCATCTAGT
50223645 TCACATAAGCTTCCA-GTTACATGGC
1 TCACATAAGCTT-CATGTTACATGGC
* *
50223670 TCACATGAGCTTCATGTTATATGGC
1 TCACATAAGCTTCATGTTACATGGC
50223695 TC
1 TC
50223697 GAAAGAGCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (25 bp):
TCACATAAGCTTCATGTTACATGGC
Found at i:50225369 original size:19 final size:18
Alignment explanation
Indices: 50225341--50225389 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
50225331 ACAAAAATAC
*
50225341 TAAAACAAAAAA-AAGAAGA
1 TAAAATAAAAAATAA-AA-A
50225360 TAAAATAAAAAATAAAAA
1 TAAAATAAAAAATAAAAA
50225378 TAAAAATAAAAA
1 T-AAAATAAAAA
50225390 CCTAAAACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 2 0.07
19 23 0.85
20 2 0.07
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (18 bp):
TAAAATAAAAAATAAAAA
Found at i:50230875 original size:15 final size:14
Alignment explanation
Indices: 50230847--50230873 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50230837 CATGCGTCTT
50230847 TTTTTTAATATTTA
1 TTTTTTAATATTTA
50230861 TTTTTTAATATTT
1 TTTTTTAATATTT
50230874 TACTATACGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTTTAATATTTA
Found at i:50233999 original size:21 final size:21
Alignment explanation
Indices: 50233973--50234013 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
50233963 ATCTGCTCAA
* *
50233973 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
50233994 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
50234014 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:50238772 original size:21 final size:21
Alignment explanation
Indices: 50238734--50238774 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
50238724 CAAACTTTTT
50238734 ATATCAAATAATCAAATATAA
1 ATATCAAATAATCAAATATAA
*
50238755 ATAT-AAATAATTATAATATA
1 ATATCAAATAATCA-AATATA
50238775 GATAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (21 bp):
ATATCAAATAATCAAATATAA
Found at i:50241612 original size:10 final size:11
Alignment explanation
Indices: 50241587--50241611 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
50241577 CTCGTCGTTA
50241587 TTTTATTTTGT
1 TTTTATTTTGT
50241598 TTTTATTTTGT
1 TTTTATTTTGT
50241609 TTT
1 TTT
50241612 ACGAATCTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (11 bp):
TTTTATTTTGT
Found at i:50243319 original size:20 final size:20
Alignment explanation
Indices: 50243294--50243333 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
50243284 GAAAATTAAG
50243294 GCAATATTTGATATTTAGGA
1 GCAATATTTGATATTTAGGA
50243314 GCAATATTTGATATTTAGGA
1 GCAATATTTGATATTTAGGA
50243334 ATTTTGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.05, G:0.20, T:0.40
Consensus pattern (20 bp):
GCAATATTTGATATTTAGGA
Found at i:50247468 original size:98 final size:98
Alignment explanation
Indices: 50247294--50247490 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
50247284 GTACAATAAA
*
50247294 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTACGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTACGGCACAATT
*
50247359 CCTCTAGAATCCCAAACTCGGAATATTCCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTCCCTTT
* *
50247392 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTACGGCACAATT
* *
50247457 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTCCCTTT
50247490 A
1 A
50247491 TTATTTTTAA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTACGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTCCCTTT
Found at i:50248843 original size:21 final size:19
Alignment explanation
Indices: 50248806--50248879 Score: 103
Period size: 19 Copynumber: 3.8 Consensus size: 19
50248796 AATCATATAT
50248806 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
50248825 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
**
50248846 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
50248865 TCTAAGGTTGCATAT
1 TCTAAGATTGCATAT
50248880 TCTCAAAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 31 0.65
21 17 0.35
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:50249960 original size:26 final size:26
Alignment explanation
Indices: 50249902--50249961 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
50249892 TAGATAGGGC
50249902 CTTGAAAATTGATTTTGAAAAATGCT
1 CTTGAAAATTGATTTTGAAAAATGCT
*
50249928 CTAGAAAA-TGACTTTT-AAGAAATGCT
1 CTTGAAAATTGA-TTTTGAA-AAATGCT
*
50249954 TTTGAAAA
1 CTTGAAAA
50249962 ATTTAAGTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (26 bp):
CTTGAAAATTGATTTTGAAAAATGCT
Found at i:50249963 original size:13 final size:13
Alignment explanation
Indices: 50249903--50249963 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
50249893 AGATAGGGCC
* *
50249903 TTGAAAATTGATT
1 TTGAAAAATGCTT
*
50249916 TTGAAAAATGCTC
1 TTGAAAAATGCTT
*
50249929 TAG-AAAATGACTT
1 TTGAAAAATG-CTT
50249942 TT-AAGAAATGCTT
1 TTGAA-AAATGCTT
50249955 TTGAAAAAT
1 TTGAAAAAT
50249964 TTAAGTGTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
12 6 0.16
13 25 0.66
14 7 0.18
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGAAAAATGCTT
Found at i:50252122 original size:72 final size:72
Alignment explanation
Indices: 50251962--50252096 Score: 225
Period size: 72 Copynumber: 1.9 Consensus size: 72
50251952 AATTTAGTAA
* *
50251962 AAATAAGTAGAACATAAATTCAATATCTAAAGACCAAACATAAACAAATATTAATAAAACTAGAT
1 AAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAAATATTAATAAAACTAGAT
50252027 TACACAT
66 TACACAT
* * *
50252034 AAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 AAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAAATATTAATAAAACTAG
50252097 TTTAGCATTG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 58 1.00
ACGTcount: A:0.57, C:0.14, G:0.06, T:0.23
Consensus pattern (72 bp):
AAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAAATATTAATAAAACTAGAT
TACACAT
Found at i:50252548 original size:18 final size:18
Alignment explanation
Indices: 50252525--50252572 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
50252515 TCCATCTACT
* *
50252525 TGAACATCATTTGAGATG
1 TGAACATCATTTAAAATG
50252543 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
*
50252561 TAAACATCATTT
1 TGAACATCATTT
50252573 CTCATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:50255414 original size:25 final size:25
Alignment explanation
Indices: 50255344--50255425 Score: 128
Period size: 25 Copynumber: 3.3 Consensus size: 25
50255334 GAAGTGGAGA
* * *
50255344 AGAGGAACAAAGAACCAACACCAAC
1 AGAGGAACAAAGAACCAGCGCCAGC
50255369 AGAGGAACAAAGAACCAGCGCCAGC
1 AGAGGAACAAAGAACCAGCGCCAGC
*
50255394 AGAGGAACAAAGAACCTGCGCCAGC
1 AGAGGAACAAAGAACCAGCGCCAGC
50255419 AGAGGAA
1 AGAGGAA
50255426 AACCAGCACC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.48, C:0.26, G:0.26, T:0.01
Consensus pattern (25 bp):
AGAGGAACAAAGAACCAGCGCCAGC
Found at i:50255453 original size:11 final size:11
Alignment explanation
Indices: 50255433--50255467 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
50255423 GAAAACCAGC
*
50255433 ACCAGTAGAGA
1 ACCAGCAGAGA
50255444 ACCAGCAGAGA
1 ACCAGCAGAGA
*
50255455 ACCAACAGAGA
1 ACCAGCAGAGA
50255466 AC
1 AC
50255468 AAAATTTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.49, C:0.26, G:0.23, T:0.03
Consensus pattern (11 bp):
ACCAGCAGAGA
Found at i:50258119 original size:23 final size:22
Alignment explanation
Indices: 50258082--50258125 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
50258072 AAGCCAAACG
50258082 AAAACAGAAAGGAAAGAAAGAA
1 AAAACAGAAAGGAAAGAAAGAA
*
50258104 AAAAGAGAAAGAGAAAGAAAGA
1 AAAACAGAAAG-GAAAGAAAGA
50258126 CCTAGGGACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00
Consensus pattern (22 bp):
AAAACAGAAAGGAAAGAAAGAA
Found at i:50267689 original size:35 final size:35
Alignment explanation
Indices: 50267643--50267709 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
50267633 AATTAATCAA
* *
50267643 CTTTGACAATTGGAGTTCTCGAACAGTCATTGGAG
1 CTTTGACAATTGGAGTTCCCGAACAGCCATTGGAG
50267678 CTTTGACAATTGGAGTTCCCGAACAGCCATTG
1 CTTTGACAATTGGAGTTCCCGAACAGCCATTG
50267710 AATTGGACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (35 bp):
CTTTGACAATTGGAGTTCCCGAACAGCCATTGGAG
Found at i:50267904 original size:32 final size:30
Alignment explanation
Indices: 50267837--50267921 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 30
50267827 TTGTGGCATC
* * *
50267837 TGAAGGGT-CTTTGGTGTGAACACTCAGAT
1 TGAATGGTCCTTTGGTGTGAACACTAAAAT
50267866 TCGAATGGTCCTTTGGGTGTGAACACTAAAAAT
1 T-GAATGGTCCTTT-GGTGTGAACACT-AAAAT
*
50267899 TGAATGGT-CTATTGATGTGAACA
1 TGAATGGTCCT-TTGGTGTGAACA
50267922 AGAGTAGCTG
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
29 1 0.02
30 6 0.13
31 15 0.32
32 21 0.45
33 4 0.09
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (30 bp):
TGAATGGTCCTTTGGTGTGAACACTAAAAT
Found at i:50271596 original size:18 final size:19
Alignment explanation
Indices: 50271559--50271597 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
50271549 AAACAAAATT
*
50271559 AACCCAACTAAACTACCCA
1 AACCCAACTAAACAACCCA
*
50271578 AACCCAA-TAACCAACCCA
1 AACCCAACTAAACAACCCA
50271596 AA
1 AA
50271598 AGGCCCATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.51, C:0.41, G:0.00, T:0.08
Consensus pattern (19 bp):
AACCCAACTAAACAACCCA
Found at i:50272777 original size:17 final size:18
Alignment explanation
Indices: 50272755--50272793 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
50272745 TATATATAAA
*
50272755 TATATTTTT-TAAATATT
1 TATATTTTTATAAATATG
50272772 TATATTTTTATAAATATG
1 TATATTTTTATAAATATG
50272790 TATA
1 TATA
50272794 AACGTATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TATATTTTTATAAATATG
Found at i:50273887 original size:11 final size:11
Alignment explanation
Indices: 50273856--50273925 Score: 56
Period size: 11 Copynumber: 6.5 Consensus size: 11
50273846 ATTTAATGTG
50273856 AAAAATAAA--
1 AAAAATAAATT
*
50273865 AAGAATAAATT
1 AAAAATAAATT
*
50273876 AAAAATAGATT
1 AAAAATAAATT
*
50273887 AAAAATATAAAT
1 AAAAATA-AATT
50273899 AAAAA-AAATT
1 AAAAATAAATT
* *
50273909 ATAAAAAAAAAT
1 A-AAAATAAATT
50273921 AAAAA
1 AAAAA
50273926 AAAAAAATAA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 8 0.16
10 4 0.08
11 25 0.51
12 12 0.24
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (11 bp):
AAAAATAAATT
Found at i:50273915 original size:13 final size:13
Alignment explanation
Indices: 50273887--50273939 Score: 70
Period size: 13 Copynumber: 4.1 Consensus size: 13
50273877 AAAATAGATT
* *
50273887 AAAAATATAAATA
1 AAAAAAATAAAAA
* *
50273900 AAAAAAATTATAA
1 AAAAAAATAAAAA
50273913 AAAAAAATAAAAA
1 AAAAAAATAAAAA
50273926 AAAAAAATAAAAA
1 AAAAAAATAAAAA
50273939 A
1 A
50273940 TATATAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAAATAAAAA
Found at i:50273916 original size:10 final size:10
Alignment explanation
Indices: 50273895--50273955 Score: 61
Period size: 10 Copynumber: 5.6 Consensus size: 10
50273885 TTAAAAATAT
50273895 AAATAAAAAA
1 AAATAAAAAA
50273905 AATTATAAAAAA
1 AA--ATAAAAAA
50273917 AAATAAAAAA
1 AAATAAAAAA
50273927 AAA-AAATAAA
1 AAATAAA-AAA
50273937 AAATATATAAAA
1 AAATA-A-AAAA
50273949 TAAATAA
1 -AAATAA
50273956 GCATATTAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
9 3 0.07
10 19 0.43
11 1 0.02
12 15 0.34
13 6 0.14
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (10 bp):
AAATAAAAAA
Found at i:50273924 original size:9 final size:9
Alignment explanation
Indices: 50273895--50273955 Score: 54
Period size: 8 Copynumber: 6.7 Consensus size: 9
50273885 TTAAAAATAT
50273895 AAATAAAAA
1 AAATAAAAA
*
50273904 AAATTATAAA
1 AAA-TAAAAA
*
50273914 AAA-AAATA
1 AAATAAAAA
50273922 AAA-AAAAA
1 AAATAAAAA
50273930 AAATAAAAA
1 AAATAAAAA
*
50273939 ATATATAAAAT
1 A-A-ATAAAAA
50273950 AAATAA
1 AAATAA
50273956 GCATATTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
8 13 0.30
9 13 0.30
10 10 0.23
11 7 0.16
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (9 bp):
AAATAAAAA
Found at i:50273953 original size:13 final size:12
Alignment explanation
Indices: 50273876--50273954 Score: 56
Period size: 12 Copynumber: 6.6 Consensus size: 12
50273866 AGAATAAATT
*
50273876 AAAAATAGATTAA
1 AAAAATATA-TAA
* *
50273889 AAATATAAATAA
1 AAAAATATATAA
50273901 AAAAA-ATTATAA
1 AAAAATA-TATAA
*
50273913 AAAAAAATA-AA
1 AAAAATATATAA
* *
50273924 AAAAAAAAAT-A
1 AAAAATATATAA
50273935 AAAAATATATAA
1 AAAAATATATAA
50273947 AATAAATA
1 AA-AAATA
50273955 AGCATATTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
11 20 0.37
12 21 0.39
13 13 0.24
ACGTcount: A:0.78, C:0.00, G:0.01, T:0.20
Consensus pattern (12 bp):
AAAAATATATAA
Found at i:50274004 original size:1 final size:1
Alignment explanation
Indices: 50273998--50274542 Score: 793
Period size: 1 Copynumber: 545.0 Consensus size: 1
50273988 TGCCAAAGTG
50273998 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50274063 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50274128 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAATAAAAAGAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * *
50274193 AAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAAAAAAAAAAGAAAAGATAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
50274258 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAGAAAAAAATAAAAAGAAAAAAAATAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * *
50274323 AAAAAAAAAAATAAAAAAAAAAAAAATAAAGAAAAGATAAAAAAAAAAAGAAATAATAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * * * * *
50274388 ACAAAATTAAAAAAAATAAAAAAAAAAAATAAAAAAAATAAAAAGAAAAAAAAAAATAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50274453 AATAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50274518 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
50274543 TGCTATTTTT
Statistics
Matches: 480, Mismatches: 64, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 480 1.00
ACGTcount: A:0.94, C:0.01, G:0.02, T:0.03
Consensus pattern (1 bp):
A
Found at i:50274552 original size:1 final size:1
Alignment explanation
Indices: 50274548--50274723 Score: 82
Period size: 1 Copynumber: 176.0 Consensus size: 1
50274538 AAAAATGCTA
** * ** * * * * *
50274548 TTTTTTTTTTAATTTTTTTTTATTTAATTTATTTTTTTTTTTTTGTTTTTTGTTTTATTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * * ** ***
50274613 TTTTATATTTTTTTTTTTTATTTTTTTTTTATTATTTTGTTATTTTAATTTTTTTTTTTTGAATT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * **
50274678 TGTTTTATTTTTTTATTTTTTTTATTTCTTTTATTAATTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
50274724 ATTAAAAGTT
Statistics
Matches: 126, Mismatches: 49, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 126 1.00
ACGTcount: A:0.13, C:0.01, G:0.03, T:0.83
Consensus pattern (1 bp):
T
Found at i:50274589 original size:26 final size:25
Alignment explanation
Indices: 50274551--50274723 Score: 136
Period size: 26 Copynumber: 6.5 Consensus size: 25
50274541 AATGCTATTT
*
50274551 TTTTTTTAATTTTTTTTTATTTAATTTA
1 TTTTTTT--TTTTTTTTTATTT-TTTTA
50274579 TTTTTTTTTTTTTGTTT-TTTGTTTTA
1 TTTTTTTTTTTTT-TTTATTT-TTTTA
*
50274605 TTTGTTTTTTTTATATTT-TTTTTTT-
1 TTT-TTTTTTTT-TTTTTATTTTTTTA
* * *
50274630 TTATTTTTTTTTTATTATTTTGTTA
1 TTTTTTTTTTTTTTTTATTTTTTTA
50274655 TTTTAATTTTTTTTTTTTGAATTTGTTTTA
1 TTTT--TTTTTTTTTTTT--ATTT-TTTTA
*
50274685 TTTTTTTATTTTTTTTATTTCTTTTA
1 TTTTTTTTTTTTTTTTATTT-TTTTA
**
50274711 TTAATTTTTTTTT
1 TTTTTTTTTTTTT
50274724 ATTAAAAGTT
Statistics
Matches: 120, Mismatches: 15, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
23 3 0.03
24 14 0.12
25 5 0.04
26 39 0.32
27 28 0.23
28 19 0.16
29 4 0.03
30 8 0.07
ACGTcount: A:0.13, C:0.01, G:0.03, T:0.83
Consensus pattern (25 bp):
TTTTTTTTTTTTTTTTATTTTTTTA
Found at i:50274622 original size:41 final size:41
Alignment explanation
Indices: 50274548--50274700 Score: 139
Period size: 43 Copynumber: 3.5 Consensus size: 41
50274538 AAAAATGCTA
* *
50274548 TTTTTTTTTTAATTTTTTTTTATTTAATTTATTTTTTTTTTTTTG
1 TTTTTTTTTTTA-TTTGTTTT-TTTAA--TATTTTTTTTTTTTTG
* *
50274593 TTTTTTGTTTTATTTGTTTTTTTTATATTTTTTTTTTTTAT-
1 TTTTTTTTTTTATTTGTTTTTTTAATATTTTTTTTTTTT-TG
* *
50274634 TTTTTTTTTATTATTTTGTTATTTTAATTTTTTTTTTTTGAATTTG
1 TTTTTTTTT-TTA-TTTGTTTTTTTAATATTTTTTTTTT---TTTG
50274680 TTTTATTTTTTTATTT-TTTTT
1 TTTT-TTTTTTTATTTGTTTTT
50274701 ATTTCTTTTA
Statistics
Matches: 91, Mismatches: 9, Indels: 17
0.78 0.08 0.15
Matches are distributed among these distances:
41 22 0.24
42 4 0.04
43 26 0.29
44 11 0.12
45 14 0.15
46 9 0.10
47 5 0.05
ACGTcount: A:0.12, C:0.00, G:0.04, T:0.84
Consensus pattern (41 bp):
TTTTTTTTTTTATTTGTTTTTTTAATATTTTTTTTTTTTTG
Found at i:50274642 original size:59 final size:57
Alignment explanation
Indices: 50274548--50274726 Score: 164
Period size: 59 Copynumber: 3.0 Consensus size: 57
50274538 AAAAATGCTA
* *
50274548 TTTTTTTTTTA-ATTTTTTTTTATTTAATTTATTTTTTTTTTTTTGTTTTTTGTTTTAT
1 TTTTTTTTTTATATTTTTTTTT-TTTATTTTTTTTTTTTTTTTTTGTTTTTT-TTTTAT
* * *
50274606 TTGTTTTTTTTATATTTTTTTTTTTTATTTTTTTTTTATTATTTTGTTATTTTAATTT-T
1 TT-TTTTTTTTATATTTTTTTTTTTTATTTTTTTTTTTTTTTTTTGTT-TTTT-TTTTAT
** * * **
50274665 TTTTTTTTGAATTTGTTTTATTTTTTTATTTTTTTTATTTCTTTTATTAATTTTTTTTTAT
1 TTTTTTTTTTATAT-TTTT-TTTTTTTATTTTTTTT-TTT-TTTTTTTGTTTTTTTTTTAT
50274726 T
1 T
50274727 AAAAGTTCAA
Statistics
Matches: 98, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
58 11 0.11
59 37 0.38
60 36 0.37
61 8 0.08
62 6 0.06
ACGTcount: A:0.13, C:0.01, G:0.03, T:0.83
Consensus pattern (57 bp):
TTTTTTTTTTATATTTTTTTTTTTTATTTTTTTTTTTTTTTTTTGTTTTTTTTTTAT
Found at i:50274725 original size:81 final size:81
Alignment explanation
Indices: 50274575--50274727 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
50274565 TTTTATTTAA
* ** *
50274575 TTTATTTTTTTTTTTTTGTTTTTTGTTTTATTTGTTTTTTTTATATTTTTTTTTTTTATTTTTTT
1 TTTAATTTTTTTTTTTTGTAATTTGTTTTATTTGTTTTTTTTATATTTTTTTTTTTTAATTTTTT
50274640 TTTATTATTTTGTTAT
66 TTTATTATTTTGTTAT
50274656 TTTAATTTTTTTTTTTTG-AATTTGTTTTATTT-TTTTATTTT-T-TTTATTTCTTTTATTAATT
1 TTTAATTTTTTTTTTTTGTAATTTGTTTTATTTGTTTT-TTTTATATTT-TTT-TTTT-TTAATT
50274717 TTTTTTTATTA
62 TTTTTTTATTA
50274728 AAAGTTCAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
78 3 0.05
79 8 0.12
80 20 0.31
81 33 0.52
ACGTcount: A:0.13, C:0.01, G:0.04, T:0.82
Consensus pattern (81 bp):
TTTAATTTTTTTTTTTTGTAATTTGTTTTATTTGTTTTTTTTATATTTTTTTTTTTTAATTTTTT
TTTATTATTTTGTTAT
Found at i:50275320 original size:1 final size:1
Alignment explanation
Indices: 50275314--50275347 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
50275304 TTGCTTTCAT
*
50275314 AAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50275348 CCGCATTGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:50275626 original size:16 final size:16
Alignment explanation
Indices: 50275605--50275651 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
50275595 ATTTATTTTT
**
50275605 AAAAAAAATAATTATA
1 AAAAAAAATAAAAATA
*
50275621 AAAAAAAAAAAAAATA
1 AAAAAAAATAAAAATA
50275637 AAAAATAAATAAAAA
1 AAAAA-AAATAAAAA
50275652 ATTTATAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 18 0.69
17 8 0.31
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAAAAAATAAAAATA
Found at i:50275634 original size:11 final size:11
Alignment explanation
Indices: 50275605--50275652 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
50275595 ATTTATTTTT
50275605 AAAAAAAATAA
1 AAAAAAAATAA
* *
50275616 TTATAAAAA-AA
1 -AAAAAAAATAA
50275627 AAAAAAAATAA
1 AAAAAAAATAA
*
50275638 AAAATAAATAA
1 AAAAAAAATAA
50275649 AAAA
1 AAAA
50275653 TTTATAAAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
10 6 0.20
11 18 0.60
12 6 0.20
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAAAAATAA
Found at i:50275659 original size:11 final size:11
Alignment explanation
Indices: 50275634--50275691 Score: 52
Period size: 10 Copynumber: 5.5 Consensus size: 11
50275624 AAAAAAAAAA
**
50275634 ATAAAAAATAA
1 ATAAAAAATTT
50275645 ATAAAAAATTT
1 ATAAAAAATTT
50275656 AT--AAAATTT
1 ATAAAAAATTT
*
50275665 A-AAAAAAATT
1 ATAAAAAATTT
50275675 -TAAAAAATTT
1 ATAAAAAATTT
50275685 AATAAAA
1 -ATAAAA
50275692 TAAAAATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
9 8 0.21
10 14 0.37
11 11 0.29
12 5 0.13
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
ATAAAAAATTT
Found at i:50275661 original size:9 final size:9
Alignment explanation
Indices: 50275646--50275725 Score: 67
Period size: 9 Copynumber: 8.9 Consensus size: 9
50275636 AAAAAATAAA
50275646 TAAAAAATT
1 TAAAAAATT
*
50275655 TATAAAATT
1 TAAAAAATT
50275664 TAAAAAAAATT
1 T--AAAAAATT
50275675 TAAAAAATT
1 TAAAAAATT
50275684 TAATAAAA--
1 TAA-AAAATT
50275692 T-AAAAATT
1 TAAAAAATT
**
50275700 TAAAAAAAA
1 TAAAAAATT
*
50275709 TAATAAATT
1 TAAAAAATT
*
50275718 TATAAAAT
1 TAAAAAAT
50275726 ATTTTTAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
6 4 0.07
7 1 0.02
8 2 0.04
9 37 0.66
10 4 0.07
11 8 0.14
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TAAAAAATT
Found at i:50275698 original size:36 final size:33
Alignment explanation
Indices: 50275658--50275726 Score: 102
Period size: 36 Copynumber: 2.0 Consensus size: 33
50275648 AAAAATTTAT
50275658 AAAATTTAAAAAAAATTTAAAAAATTTAATAAAATA
1 AAAATTTAAAAAAAA--TAAAAAATTT-ATAAAATA
*
50275694 AAAATTTAAAAAAAATAATAAATTTATAAAATA
1 AAAATTTAAAAAAAATAAAAAATTTATAAAATA
50275727 TTTTTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 8 0.25
34 9 0.28
36 15 0.47
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (33 bp):
AAAATTTAAAAAAAATAAAAAATTTATAAAATA
Found at i:50275702 original size:25 final size:25
Alignment explanation
Indices: 50275668--50275715 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
50275658 AAAATTTAAA
**
50275668 AAAAATTTAAAAAATTTAATAAAAT
1 AAAAATTTAAAAAAAATAATAAAAT
50275693 AAAAATTTAAAAAAAATAATAAA
1 AAAAATTTAAAAAAAATAATAAA
50275716 TTTATAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (25 bp):
AAAAATTTAAAAAAAATAATAAAAT
Found at i:50275707 original size:11 final size:11
Alignment explanation
Indices: 50275658--50275709 Score: 52
Period size: 11 Copynumber: 4.5 Consensus size: 11
50275648 AAAAATTTAT
50275658 AAAATTTAAAA
1 AAAATTTAAAA
50275669 AAAATTTAAAA
1 AAAATTTAAAA
*
50275680 AATTTAA-TAAAATA
1 AA---AATTTAAA-A
50275694 AAAATTTAAAA
1 AAAATTTAAAA
50275705 AAAAT
1 AAAAT
50275710 AATAAATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
11 21 0.62
12 4 0.12
13 4 0.12
14 5 0.15
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AAAATTTAAAA
Found at i:50275786 original size:15 final size:15
Alignment explanation
Indices: 50275752--50275800 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
50275742 TTAGAGTTTT
*
50275752 AAAAAATATAAA-GA
1 AAAAAATATAAATTA
50275766 AAAAAATAATTATAATTA
1 AAAAAAT-A-TA-AATTA
50275784 AAAAAATATAAATTA
1 AAAAAATATAAATTA
50275799 AA
1 AA
50275801 TATTAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 7 0.23
15 8 0.27
16 4 0.13
17 3 0.10
18 8 0.27
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (15 bp):
AAAAAATATAAATTA
Found at i:50275870 original size:13 final size:12
Alignment explanation
Indices: 50275852--50275896 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
50275842 ATTAATTTAA
50275852 ATAAATTAATAAT
1 ATAAATTAA-AAT
50275865 ATAAATTAAAAT
1 ATAAATTAAAAT
*
50275877 ATAAAATAAAA-
1 ATAAATTAAAAT
50275888 A-AAATTAAA
1 ATAAATTAAA
50275897 TTTTATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
10 7 0.23
11 1 0.03
12 13 0.43
13 9 0.30
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
ATAAATTAAAAT
Found at i:50275874 original size:18 final size:18
Alignment explanation
Indices: 50275836--50275870 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
50275826 TTTTTTTTAA
*
50275836 AAATTAATTAATTTAAAT
1 AAATTAATTAATATAAAT
50275854 AAATTAA-TAATATAAAT
1 AAATTAATTAATATAAAT
50275871 TAAAATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATTAATTAATATAAAT
Found at i:50275896 original size:15 final size:15
Alignment explanation
Indices: 50275872--50275937 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
50275862 AATATAAATT
50275872 AAAATATAAAATAAAA
1 AAAATA-AAAATAAAA
** * *
50275888 AAAATTAAATTTTATA
1 AAAA-TAAAAATAAAA
***
50275904 AAAATAAAAATTTTA
1 AAAATAAAAATAAAA
50275919 AAAATAAAAATAAAA
1 AAAATAAAAATAAAA
50275934 AAAA
1 AAAA
50275938 AAATAAAAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
15 24 0.62
16 13 0.33
17 2 0.05
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATAAAAATAAAA
Found at i:50275912 original size:6 final size:6
Alignment explanation
Indices: 50275901--50275947 Score: 58
Period size: 6 Copynumber: 7.3 Consensus size: 6
50275891 ATTAAATTTT
*
50275901 ATAAAA ATAAAA ATTTTAAAA ATAAAA ATAAAA AAAAAA ATAAAA AT
1 ATAAAA ATAAAA A---TAAAA ATAAAA ATAAAA ATAAAA ATAAAA AT
50275948 TAAATTTTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
6 30 0.83
9 6 0.17
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
ATAAAA
Found at i:50275914 original size:17 final size:16
Alignment explanation
Indices: 50275894--50275929 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 16
50275884 AAAAAAAATT
50275894 AAATTTTATAAAAATAA
1 AAATTTT-TAAAAATAA
50275911 AAA-TTTTAAAAATAA
1 AAATTTTTAAAAATAA
50275926 AAAT
1 AAAT
50275930 AAAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 12 0.67
16 3 0.17
17 3 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATTTTTAAAAATAA
Found at i:50275979 original size:14 final size:14
Alignment explanation
Indices: 50275943--50275972 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
50275933 AAAAAAAATA
*
50275943 AAAATTAAATTTTT
1 AAAATTTAATTTTT
50275957 AAAATTTAATTTTT
1 AAAATTTAATTTTT
50275971 AA
1 AA
50275973 TTTTTAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AAAATTTAATTTTT
Found at i:50275991 original size:21 final size:21
Alignment explanation
Indices: 50275950--50275993 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
50275940 ATAAAAATTA
* *
50275950 AATTTTTAAAATTTAATTTTT
1 AATTTTTAAAATTAAAGTTTT
*
50275971 AATTTTTAAAGTTAAAGTTTT
1 AATTTTTAAAATTAAAGTTTT
50275992 AA
1 AA
50275994 ATTAAAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (21 bp):
AATTTTTAAAATTAAAGTTTT
Found at i:50276018 original size:20 final size:21
Alignment explanation
Indices: 50275988--50276051 Score: 85
Period size: 20 Copynumber: 3.0 Consensus size: 21
50275978 AAAGTTAAAG
50275988 TTTTAAATTAAAAAAAAAAAA
1 TTTTAAATTAAAAAAAAAAAA
* *
50276009 TTTT-AATTAAAAAAATAACA
1 TTTTAAATTAAAAAAAAAAAA
50276029 TTTTAAATTATAAATAAAAAAAA
1 TTTTAAATTA-AAA-AAAAAAAA
50276052 AAAATTTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 18 0.50
21 9 0.25
22 3 0.08
23 6 0.17
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
TTTTAAATTAAAAAAAAAAAA
Found at i:50276058 original size:27 final size:27
Alignment explanation
Indices: 50276006--50276058 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
50275996 TAAAAAAAAA
* * * *
50276006 AAATTTTAATTAAAAAAATAACATTTT
1 AAATTATAAATAAAAAAAAAAAATTTT
50276033 AAATTATAAATAAAAAAAAAAAATTT
1 AAATTATAAATAAAAAAAAAAAATTT
50276059 AAAAAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (27 bp):
AAATTATAAATAAAAAAAAAAAATTTT
Found at i:50276061 original size:19 final size:19
Alignment explanation
Indices: 50276033--50276071 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
50276023 ATAACATTTT
50276033 AAATTATAAATAAAAAAAAA
1 AAATTATAAA-AAAAAAAAA
50276053 AAATT-TAAAAAAAAAAAA
1 AAATTATAAAAAAAAAAAA
50276071 A
1 A
50276072 CCACCACTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
19 4 0.21
20 5 0.26
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (19 bp):
AAATTATAAAAAAAAAAAA
Found at i:50276890 original size:1 final size:1
Alignment explanation
Indices: 50276886--50276915 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
50276876 TGTTTTTCCC
50276886 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
50276916 AAAAAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:50276960 original size:23 final size:23
Alignment explanation
Indices: 50276934--50276993 Score: 95
Period size: 23 Copynumber: 2.7 Consensus size: 23
50276924 TAAACGTTTA
* *
50276934 TTTTTTTTT-AAAAATTTTTTTT
1 TTTTTTTTTAAAAAATTTTGTAT
50276956 TTTTTTTTTAAAAAATTTTGTAT
1 TTTTTTTTTAAAAAATTTTGTAT
50276979 TTTTTTTTTAAAAAA
1 TTTTTTTTTAAAAAA
50276994 AAAATTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
22 9 0.26
23 26 0.74
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (23 bp):
TTTTTTTTTAAAAAATTTTGTAT
Found at i:50277020 original size:11 final size:11
Alignment explanation
Indices: 50276998--50277035 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
50276988 AAAAAAAAAA
50276998 TTTTTT-TA-T
1 TTTTTTATATT
50277007 TTTTTTATATT
1 TTTTTTATATT
50277018 TTTTTTATAATT
1 TTTTTTAT-ATT
50277030 TTTTTT
1 TTTTTT
50277036 TTACATTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 6 0.23
10 2 0.08
11 9 0.35
12 9 0.35
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTTATATT
Found at i:50277044 original size:11 final size:12
Alignment explanation
Indices: 50277006--50277061 Score: 60
Period size: 12 Copynumber: 4.6 Consensus size: 12
50276996 AATTTTTTTA
50277006 TTTTTTTAT-AT
1 TTTTTTTATAAT
50277017 TTTTTTTATAAT
1 TTTTTTTATAAT
*
50277029 TTTTTTTTTACAT
1 TTTTTTTATA-AT
* *
50277042 TTTATATTAAAAT
1 TTT-TTTTATAAT
50277055 TTTTTTT
1 TTTTTTT
50277062 TTTTTAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
11 9 0.24
12 14 0.38
13 10 0.27
14 4 0.11
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTTTTTATAAT
Found at i:50277146 original size:12 final size:11
Alignment explanation
Indices: 50277125--50277152 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
50277115 AATTAATTAA
50277125 TTTTTATTTTT
1 TTTTTATTTTT
50277136 TTTTTATTTTT
1 TTTTTATTTTT
50277147 TTTTTA
1 TTTTTA
50277153 AAAAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTATTTTT
Found at i:50277166 original size:38 final size:37
Alignment explanation
Indices: 50277086--50277202 Score: 137
Period size: 37 Copynumber: 3.0 Consensus size: 37
50277076 TAAATTTCTC
***
50277086 TTTTTTTTTTTTATTTTTTTAAAAAAAATAATTAATTAATTT
1 TTTTTTTTTTTTATTTTTTTTTTAAAAA-AA-T--TT-ATTT
50277128 TTATTTTTTTTTTATTTTTTTTTTAAAAAAATTTATTT
1 TT-TTTTTTTTTTATTTTTTTTTTAAAAAAATTTATTT
*
50277166 TTTTTTTTTTTTTTTTTTTTTTTAAAAAAATTT-TTT
1 TTTTTTTTTTTTATTTTTTTTTTAAAAAAATTTATTT
50277202 T
1 T
50277203 AAAATAAAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
36 4 0.06
37 30 0.43
38 6 0.09
39 2 0.03
41 1 0.01
42 4 0.06
43 23 0.33
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (37 bp):
TTTTTTTTTTTTATTTTTTTTTTAAAAAAATTTATTT
Found at i:50277202 original size:1 final size:1
Alignment explanation
Indices: 50277163--50277188 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
50277153 AAAAAATTTA
50277163 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
50277189 AAAAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:50277274 original size:1 final size:1
Alignment explanation
Indices: 50277268--50277318 Score: 57
Period size: 1 Copynumber: 51.0 Consensus size: 1
50277258 TTTTGTCCTA
* * ** *
50277268 TTTTTTTTTATTTTTTGTTTTAATTTTTTTTTTTTTTATTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
50277319 AAAAAATGAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.08, C:0.00, G:0.02, T:0.90
Consensus pattern (1 bp):
T
Found at i:50277284 original size:22 final size:21
Alignment explanation
Indices: 50277258--50277304 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
50277248 ATGTATGCCA
*
50277258 TTTTGTCCTATTTTTTTTTATT
1 TTTTGTCCTAATTTTTTTT-TT
**
50277280 TTTTGTTTTAATTTTTTTTTT
1 TTTTGTCCTAATTTTTTTTTT
50277301 TTTT
1 TTTT
50277305 ATTTTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.09, C:0.04, G:0.04, T:0.83
Consensus pattern (21 bp):
TTTTGTCCTAATTTTTTTTTT
Found at i:50277288 original size:14 final size:13
Alignment explanation
Indices: 50277268--50277317 Score: 66
Period size: 13 Copynumber: 3.7 Consensus size: 13
50277258 TTTTGTCCTA
50277268 TTTTTTTTTATTT
1 TTTTTTTTTATTT
50277281 TTTGTTTTAATT-TTT
1 TTT-TTTT--TTATTT
50277296 TTTTTTTTTATTT
1 TTTTTTTTTATTT
50277309 TTTTTTTTT
1 TTTTTTTTT
50277318 TAAAAAATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 2 0.06
13 15 0.45
14 8 0.24
15 6 0.18
16 2 0.06
ACGTcount: A:0.08, C:0.00, G:0.02, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTATTT
Found at i:50277288 original size:15 final size:14
Alignment explanation
Indices: 50277268--50277319 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
50277258 TTTTGTCCTA
50277268 TTTTTTTTTA-TTT
1 TTTTTTTTTATTTT
* *
50277281 TTTGTTTTAATTTTT
1 TTTTTTTTTA-TTTT
50277296 TTTTTTTTTATTTT
1 TTTTTTTTTATTTT
50277310 TTTTTTTTTA
1 TTTTTTTTTA
50277320 AAAAATGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 8 0.24
14 14 0.42
15 11 0.33
ACGTcount: A:0.10, C:0.00, G:0.02, T:0.88
Consensus pattern (14 bp):
TTTTTTTTTATTTT
Found at i:50277297 original size:16 final size:15
Alignment explanation
Indices: 50277278--50277320 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
50277268 TTTTTTTTTA
*
50277278 TTTTTTGTTTTAATT
1 TTTTTTTTTTTAATT
*
50277293 TTTTTTTTTTTTATT
1 TTTTTTTTTTTAATT
50277308 TTTTTTTTTTTAA
1 TTTTTTTTTTTAA
50277321 AAAATGAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.12, C:0.00, G:0.02, T:0.86
Consensus pattern (15 bp):
TTTTTTTTTTTAATT
Found at i:50277918 original size:15 final size:17
Alignment explanation
Indices: 50277884--50277926 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 17
50277874 AAAAAAAAAA
*
50277884 TAAATAAATTATATAGG
1 TAAAAAAATTATATAGG
50277901 TAAAAAAATT-TA-AGG
1 TAAAAAAATTATATAGG
*
50277916 TAAAATAATTA
1 TAAAAAAATTA
50277927 AATTTTTGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 12 0.52
16 2 0.09
17 9 0.39
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (17 bp):
TAAAAAAATTATATAGG
Found at i:50277966 original size:16 final size:16
Alignment explanation
Indices: 50277938--50277982 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
50277928 ATTTTTGTAG
*
50277938 TTAA-AAAAAAAAAAA
1 TTAATAAAATAAAAAA
50277953 TTAATAAAATAAAAAA
1 TTAATAAAATAAAAAA
50277969 TTAATAAAAATAAA
1 TTAAT-AAAATAAA
50277983 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 4 0.15
16 15 0.56
17 8 0.30
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
TTAATAAAATAAAAAA
Found at i:50277993 original size:16 final size:14
Alignment explanation
Indices: 50277941--50277993 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
50277931 TTTGTAGTTA
50277941 AAAAAAAAAAAATT
1 AAAAAAAAAAAATT
50277955 AATAAAATAAAAAATT
1 AA-AAAA-AAAAAATT
* *
50277971 AATAAAAATAAATT
1 AAAAAAAAAAAATT
*
50277985 TAAAAAAAA
1 AAAAAAAAA
50277994 GGCCTTTTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
14 15 0.47
15 7 0.22
16 10 0.31
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAAAAAAAAATT
Found at i:50278102 original size:18 final size:17
Alignment explanation
Indices: 50278076--50278142 Score: 66
Period size: 18 Copynumber: 3.9 Consensus size: 17
50278066 TTTTTAACAT
* *
50278076 ATTTATTTTAAATTGTTA
1 ATTTTTTTTATATT-TTA
50278094 ATTTTTTTT-TA-TTTA
1 ATTTTTTTTATATTTTA
* *
50278109 TTTTTTTTTGTATTTTA
1 ATTTTTTTTATATTTTA
50278126 ATTTTTTTTATTATTTT
1 ATTTTTTTTA-TATTTT
50278143 TCAAATTATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
15 11 0.27
16 3 0.07
17 13 0.32
18 14 0.34
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
ATTTTTTTTATATTTTA
Found at i:50278141 original size:12 final size:12
Alignment explanation
Indices: 50278099--50278176 Score: 50
Period size: 12 Copynumber: 5.9 Consensus size: 12
50278089 TGTTAATTTT
50278099 TTTTTATTTATT-
1 TTTTT-TTTATTA
50278111 TTTTTTTGTATTTTAA
1 TTTTTTT-TA--TT-A
50278127 TTTTTTTTATTA
1 TTTTTTTTATTA
***
50278139 TTTTTCAAATTA
1 TTTTTTTTATTA
50278151 TTATTTTTGTATATA
1 TT-TTTTT-TAT-TA
50278166 TTTTTTTTATT
1 TTTTTTTTATT
50278177 TATCAATTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
11 2 0.04
12 20 0.38
13 8 0.15
14 9 0.17
15 6 0.12
16 7 0.13
ACGTcount: A:0.21, C:0.01, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTTTTTTATTA
Found at i:50278192 original size:36 final size:35
Alignment explanation
Indices: 50278129--50278208 Score: 83
Period size: 35 Copynumber: 2.2 Consensus size: 35
50278119 TATTTTAATT
* *
50278129 TTTTTTATTATTTTTCAAATTATTATTTTTGTAT-ATA
1 TTTTTT-TTATTTATCAAATTATTATTTAT-TATGA-A
*
50278166 TTTTTTTTATTTATC-AATTTTATATTTATTATGAA
1 TTTTTTTTATTTATCAAATTAT-TATTTATTATGAA
50278201 TTTTTTTT
1 TTTTTTTT
50278209 TTTTGTTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
35 17 0.45
36 15 0.39
37 6 0.16
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (35 bp):
TTTTTTTTATTTATCAAATTATTATTTATTATGAA
Found at i:50278222 original size:20 final size:19
Alignment explanation
Indices: 50278199--50278308 Score: 71
Period size: 20 Copynumber: 5.5 Consensus size: 19
50278189 ATTTATTATG
*
50278199 AATTTTTTTTTTTTGTTTTA
1 AATTTTTTTATTTT-TTTTA
50278219 AATTTTATTTATTTTTTTTA
1 AATTTT-TTTATTTTTTTTA
*
50278239 AATATTTTATTATTTTATATTTT
1 AAT-TTTT-TTATTTT-T-TTTA
* * * *
50278262 TA-TTTTTAATTATTTTAA
1 AATTTTTTTATTTTTTTTA
*
50278280 AATTTATTTTAATTTTTTT-
1 AATTT-TTTTATTTTTTTTA
*
50278299 ATTTTTTTTA
1 AATTTTTTTA
50278309 ATTATATATT
Statistics
Matches: 70, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
18 8 0.11
19 7 0.10
20 29 0.41
21 21 0.30
22 1 0.01
23 4 0.06
ACGTcount: A:0.25, C:0.00, G:0.01, T:0.74
Consensus pattern (19 bp):
AATTTTTTTATTTTTTTTA
Found at i:50278254 original size:30 final size:31
Alignment explanation
Indices: 50278220--50278278 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
50278210 TTTGTTTTAA
50278220 ATTTTAT-TTATTT-TTTTTAAATATTTTATT
1 ATTTTATATT-TTTATTTTTAAATATTTTATT
*
50278250 ATTTTATATTTTTATTTTTAATTATTTTA
1 ATTTTATATTTTTATTTTTAAATATTTTA
50278279 AAATTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (31 bp):
ATTTTATATTTTTATTTTTAAATATTTTATT
Found at i:50278297 original size:92 final size:93
Alignment explanation
Indices: 50278093--50278305 Score: 220
Period size: 95 Copynumber: 2.3 Consensus size: 93
50278083 TTAAATTGTT
* * * * *
50278093 AATTTTTTTTTATTTATTTTTTTTTGTATTTTAATTTTTTTTATTATTTTTCAAATTATTATTTT
1 AATTTATTTTAATTTTTTTTTTTTTGTATTTAAATTTTATTTATTATTTTTCAAATTATTATTTT
* *
50278158 TGTATATATTTTTTTTATTTATCAATTTTA
66 TGTATATATTTTTTTTAATTAT--ATTTAA
* * * *
50278188 TATTTATTATGAA-TTTTTTTTTTTTGT-TTTAAATTTTATTTATT-TTTTTTAAATATTTTATT
1 AATTTATT-TTAATTTTTTTTTTTTTGTATTTAAATTTTATTTATTATTTTTCAAAT-TATTATT
*
50278250 ATTT-TATATTTTTATTTTTAATTAT-TTTAA
64 -TTTGTATATATTT-TTTTTAATTATATTTAA
50278280 AATTTATTTTAATTTTTTTATTTTTT
1 AATTTATTTTAATTTTTTT-TTTTTT
50278306 TTAATTATAT
Statistics
Matches: 98, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
91 3 0.03
92 17 0.17
93 15 0.15
94 29 0.30
95 32 0.33
96 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.02, T:0.73
Consensus pattern (93 bp):
AATTTATTTTAATTTTTTTTTTTTTGTATTTAAATTTTATTTATTATTTTTCAAATTATTATTTT
TGTATATATTTTTTTTAATTATATTTAA
Found at i:50278298 original size:30 final size:29
Alignment explanation
Indices: 50278214--50278309 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 29
50278204 TTTTTTTTTG
*
50278214 TTTTAAATTTTA-TTTATTTTTTTTAAATA
1 TTTTAAATTTTATTTTA-TTTTTTTAATTA
*
50278243 TTTTATTATTTTATATTT-TTATTTTTAATTA
1 TTTTA-AATTTTAT-TTTATT-TTTTTAATTA
* * *
50278274 TTTTAAAATTTATTTTAATTTTTTTATTTT
1 TTTTAAATTTTATTTT-ATTTTTTTAATTA
50278304 TTTTAA
1 TTTTAA
50278310 TTATATATTT
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
29 8 0.15
30 28 0.51
31 16 0.29
32 3 0.05
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (29 bp):
TTTTAAATTTTATTTTATTTTTTTAATTA
Found at i:50278306 original size:94 final size:93
Alignment explanation
Indices: 50278104--50278304 Score: 223
Period size: 94 Copynumber: 2.1 Consensus size: 93
50278094 ATTTTTTTTT
* *
50278104 ATTTATTTTTTTTTGTATTTTAATTTTTTTTATTATTTTTCAAATTATTATTTTTGTATATATTT
1 ATTT-TTTTTTTTTGTATTTAAATTTTATTTATTATTTTTCAAATTATTATTTTTGTATATATTT
* * *
50278169 TTTTTATTTATCAATTTTATATTTATTATGA
65 TTTTTAATTAT--ATTTAAAATTTATTATGA
* * *
50278200 ATTTTTTTTTTTTGT-TTTAAATTTTATTTATT-TTTTTTAAATATTTTATTATTT-TATATTTT
1 ATTTTTTTTTTTTGTATTTAAATTTTATTTATTATTTTTCAAAT-TATTATT-TTTGTATATATT
*
50278262 TATTTTTAATTAT-TTTAAAATTTATT-TTA
64 T-TTTTTAATTATATTTAAAATTTATTATGA
50278291 ATTTTTTTATTTTT
1 ATTTTTTT-TTTTT
50278305 TTTAATTATA
Statistics
Matches: 92, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
91 10 0.11
92 16 0.17
93 9 0.10
94 29 0.32
95 24 0.26
96 4 0.04
ACGTcount: A:0.25, C:0.01, G:0.02, T:0.72
Consensus pattern (93 bp):
ATTTTTTTTTTTTGTATTTAAATTTTATTTATTATTTTTCAAATTATTATTTTTGTATATATTTT
TTTTAATTATATTTAAAATTTATTATGA
Found at i:50278393 original size:1 final size:1
Alignment explanation
Indices: 50278379--50279402 Score: 1652
Period size: 1 Copynumber: 1024.0 Consensus size: 1
50278369 GGGTCAACGT
* * *
50278379 AAAAAATAATAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50278444 AAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50278509 AAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50278574 AAAAAAAAAAAAAAAAATAAAATAAAAAAAAAAAATAAAAAAAAAAAAAAAAAATAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50278639 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50278704 AAATAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50278769 AAAAAAATAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
50278834 AAATAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* **
50278899 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAATTAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** *
50278964 AAAAAAATAAAAAAAAAAAAAAAATTAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50279029 AATAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50279094 AAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
50279159 AAATAAAATAAAAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * ** *
50279224 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAATAAAAAATTATAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50279289 AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50279354 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50279403 GCCATTTTTT
Statistics
Matches: 941, Mismatches: 82, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
1 941 1.00
ACGTcount: A:0.96, C:0.00, G:0.00, T:0.04
Consensus pattern (1 bp):
A
Found at i:50279483 original size:20 final size:20
Alignment explanation
Indices: 50279440--50279482 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
50279430 ATATAAAAAA
50279440 TTTTATATTAAATTTTTTTT
1 TTTTATATTAAATTTTTTTT
50279460 TTTTATATT--ATTTTTTATT
1 TTTTATATTAAATTTTTT-TT
50279479 TTTT
1 TTTT
50279483 TTTTTTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.32
19 6 0.27
20 9 0.41
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTATATTAAATTTTTTTT
Found at i:50279485 original size:24 final size:24
Alignment explanation
Indices: 50279453--50279500 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
50279443 TATATTAAAT
50279453 TTTTTTTTTTTATATTATT-TTTTA
1 TTTTTTTTTTTATATT-TTATTTTA
*
50279477 TTTTTTTTTTTTTATTTTATTTTA
1 TTTTTTTTTTTATATTTTATTTTA
50279501 AATTATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (24 bp):
TTTTTTTTTTTATATTTTATTTTA
Found at i:50279510 original size:31 final size:30
Alignment explanation
Indices: 50279452--50279510 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
50279442 TTATATTAAA
** *
50279452 TTTTTTTTTTTTATATTATTTTTTATTTTT
1 TTTTTTTTTTTTATATTAAATTATATTTTT
*
50279482 TTTTTTTTATTTTATTTTAAATTATATTT
1 TTTTTTTT-TTTTATATTAAATTATATTT
50279511 ATAATAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (30 bp):
TTTTTTTTTTTTATATTAAATTATATTTTT
Found at i:50279572 original size:28 final size:30
Alignment explanation
Indices: 50279517--50279574 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 30
50279507 ATTTATAATA
**
50279517 AATTATATTTTATTAGTTTTATTGTAAAAAT
1 AATTATATTTTATTAG-TTTATAATAAAAAT
50279548 AATTAT-TTTTATTA-TTTATAATAAAAA
1 AATTATATTTTATTAGTTTATAATAAAAA
50279575 AAAAAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 11 0.44
30 8 0.32
31 6 0.24
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (30 bp):
AATTATATTTTATTAGTTTATAATAAAAAT
Found at i:50279604 original size:15 final size:15
Alignment explanation
Indices: 50279586--50279617 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
50279576 AAAAATTAAT
*
50279586 ATTTTTAAAAAAAAA
1 ATTTATAAAAAAAAA
50279601 ATTTATAAAAAAAAA
1 ATTTATAAAAAAAAA
50279616 AT
1 AT
50279618 AAATTTATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATTTATAAAAAAAAA
Found at i:50279605 original size:40 final size:41
Alignment explanation
Indices: 50279561--50279640 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 41
50279551 TATTTTTATT
*
50279561 ATTTATAATAAAAAAAA-AAATTAAT-ATTTTTAAAAAAAAA
1 ATTTATAA-AAAAAAAATAAATTAATCATTCTTAAAAAAAAA
* *
50279601 ATTTATAAAAAAAAAATAAATTTATCATTCTTGAAAAAAA
1 ATTTATAAAAAAAAAATAAATTAATCATTCTTAAAAAAAA
50279641 GAAAAAAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
39 8 0.23
40 15 0.43
41 12 0.34
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.33
Consensus pattern (41 bp):
ATTTATAAAAAAAAAATAAATTAATCATTCTTAAAAAAAAA
Found at i:50279640 original size:1 final size:1
Alignment explanation
Indices: 50279634--50279686 Score: 52
Period size: 1 Copynumber: 53.0 Consensus size: 1
50279624 ATCATTCTTG
* * * * **
50279634 AAAAAAAGAAAAAAAAAAATAAAAAAAAAAGAAAAAGAAAAACGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50279687 GGCACAATAG
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.89, C:0.02, G:0.08, T:0.02
Consensus pattern (1 bp):
A
Found at i:50279651 original size:12 final size:12
Alignment explanation
Indices: 50279634--50279686 Score: 72
Period size: 12 Copynumber: 4.4 Consensus size: 12
50279624 ATCATTCTTG
50279634 AAAAAAAGAAAA
1 AAAAAAAGAAAA
*
50279646 AAAAAAA-TAAA
1 AAAAAAAGAAAA
50279657 AAAAAAAGAAAA
1 AAAAAAAGAAAA
*
50279669 AGAAAAACGAAAA
1 A-AAAAAAGAAAA
50279682 AAAAA
1 AAAAA
50279687 GGCACAATAG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
11 10 0.28
12 15 0.42
13 11 0.31
ACGTcount: A:0.89, C:0.02, G:0.08, T:0.02
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:50279660 original size:23 final size:23
Alignment explanation
Indices: 50279634--50279687 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
50279624 ATCATTCTTG
*
50279634 AAAAAAAGAAAAAAAAAAATAAA
1 AAAAAAAGAAAAAAAAAAACAAA
* *
50279657 AAAAAAAGAAAAAGAAAAACGAA
1 AAAAAAAGAAAAAAAAAAACAAA
50279680 AAAAAAAG
1 AAAAAAAG
50279688 GCACAATAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.87, C:0.02, G:0.09, T:0.02
Consensus pattern (23 bp):
AAAAAAAGAAAAAAAAAAACAAA
Found at i:50280228 original size:19 final size:19
Alignment explanation
Indices: 50280204--50280243 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
50280194 AAAATATAGG
50280204 TTTTTTTGTTTTT--TTTTA
1 TTTTTTT-TTTTTAATTTTA
50280222 TTTTTTTTTTTTAATTTTA
1 TTTTTTTTTTTTAATTTTA
50280241 TTT
1 TTT
50280244 AAGAACACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 7 0.35
19 8 0.40
ACGTcount: A:0.10, C:0.00, G:0.03, T:0.88
Consensus pattern (19 bp):
TTTTTTTTTTTTAATTTTA
Found at i:50280231 original size:14 final size:15
Alignment explanation
Indices: 50280207--50280239 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
50280197 ATATAGGTTT
*
50280207 TTTTGTTTTTTTTTA
1 TTTTGTTTTTTTTAA
50280222 TTTT-TTTTTTTTAA
1 TTTTGTTTTTTTTAA
50280236 TTTT
1 TTTT
50280240 ATTTAAGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.09, C:0.00, G:0.03, T:0.88
Consensus pattern (15 bp):
TTTTGTTTTTTTTAA
Found at i:50280332 original size:1 final size:1
Alignment explanation
Indices: 50280328--50280958 Score: 236
Period size: 1 Copynumber: 631.0 Consensus size: 1
50280318 AAAGAGGAAT
* * * ** * * *
50280328 AAAAAAGAAGAAAAAAAAAAAGAAAGGAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * *** *
50280393 AAAAAAAGGAAGAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGGAAGAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** *** * * * *
50280458 AAAAGGAAAAAAAAAAAAAAAAAAAAGGGAGAAAAAAAAAAAAAAAAGAAAAAAAAGAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * * * * * ** *** **
50280523 GGAGAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAAGAGAGAAAGGAGGGAAAGGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *** ** ** ** * *** * **
50280588 AAAAAGAGGGAAAAAAAAAAACCAAAAAAAGGAAAAGGAGAGGGAAAAGAAAAAAAGGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * *** * * ** **** * * ** * *
50280653 GAAAGGAAAAAGAAAAAAAGGGAAAGAAAAAAGAGGAAAAAGGGGAGAAAAAAAGAGTAAAGAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * ** * * * * * *
50280718 AAAAAAAAAAAAGAAGGAAAGAAGGAAAAAAGACAAAAAGAAAGAAAGAAAAAACAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * ** ** ** * *
50280783 AACAAGAAAAAAAAAAAGAAGAAAAAAAGAAAAAAAAAAAAATGAAAAACTAGGAGAAAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
******** ***
50280848 ATTTTTTTTATCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50280913 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50280959 CAGGGAGTCA
Statistics
Matches: 481, Mismatches: 149, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 481 1.00
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (1 bp):
A
Found at i:50280360 original size:47 final size:43
Alignment explanation
Indices: 50280309--50280958 Score: 304
Period size: 44 Copynumber: 14.6 Consensus size: 43
50280299 AAGCTCCGGG
* *
50280309 GAAAAAGAAAAAGAGGAATAAAAAAGAAGAAAAAAAAAAAGAAAGGA
1 GAAAAA-AAAAAAAAGAA-AAAAAA-AA-AAAAAAAAAAAGAAAGGA
* **
50280356 GAAAAAAGAAAAAAA-AAAAAAAAAAAAAAAAGAAAAAAAAAAAA
1 GAAAAAA-AAAAAAAGAAAAAAAAAAAAAAAA-AAAAAGAAAGGA
* *
50280400 GGAAGAAAAAAAAAAG-AAAAAAAAAAAAAAAAAAAA-AAGGGAA
1 -GAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAGG-A
*
50280443 GAAAAAAAAAAAAA-AAAAAGGAAAAAAAAAAAAAAAAAAAAGGGA
1 GAAAAAAAAAAAAAGAAAAA--AAAAAAAAAAAAAAAAGAAA-GGA
**
50280488 GAAAAAAAAAAAAA-AAAGAAAAAAAAGAAGAAAAAGGAGAAA--A
1 GAAAAAAAAAAAAAGAAA-AAAAAAAA-AA-AAAAAAAAGAAAGGA
* *
50280531 -AAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAAGAGAGAAAGGA
1 GAAAAAAAAAAAAAGAAAA-AAAAAAAAAAAAAAAAAGAAAGGA
* *
50280574 GGGAAAGGAAAAAAAAAAAGAGGGAAAAAAAAAAACCAAAAAAAGGAAAAGGA
1 --G-AA--AAAAAAAAAAAGA---AAAAAAAAAAA-AAAAAAAAAG-AAAGGA
* * *
50280627 GAGGGAAAAGAAAAAAAGGAAAAAAAGAAAGGAAAAAGAAAA-AAAGG-
1 GA---AAAA-AAAAAAAAGAAAAAAA-AAA-AAAAAAAAAAAGAAAGGA
* * * **** * * *
50280674 G-AAAGAAAAAAGAGGAAAAAGGGGAGAAAAAAAGAGTAAAGAA
1 GAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAG-AAAGGA
* * *
50280717 G-AAAAAAAAAAAAGAAGGAAAGAAGGAAAAAAGACAAAAAGAAAGAAA
1 GAAAAAAAAAAAAAGAA--AAA-AA--AAAAAAAAAAAAAAGAAAG-GA
* **
50280765 GAAAAAACAAAAAAA-AAAAACAAGAAAAAAAAAAAGAAGAAAAAAA
1 GAAAAAA-AAAAAAAGAAAAA-AA-AAAAAAAAAAAAAAG-AAAGGA
* * * ********
50280811 GAAAAAAAAAAAAATGAAAAACTAGGAGAAAAAAATAATTTTTTTTA
1 GAAAAAAAAAAAAA-GAAAAA--A-AAAAAAAAAAAAAAAGAAAGGA
50280858 TCGAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAA-AAA--A
1 --GAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAGGA
50280899 -AAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAA-AAA--A
1 GAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAGGA
50280937 -AAAAAAAAAAAAA-AAAAAAAAA
1 GAAAAAAAAAAAAAGAAAAAAAAA
50280959 CAGGGAGTCA
Statistics
Matches: 476, Mismatches: 75, Indels: 113
0.72 0.11 0.17
Matches are distributed among these distances:
38 60 0.13
40 7 0.01
41 11 0.02
42 51 0.11
43 40 0.08
44 65 0.14
45 45 0.09
46 39 0.08
47 37 0.08
48 26 0.05
49 40 0.08
50 17 0.04
51 13 0.03
52 18 0.04
53 7 0.01
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (43 bp):
GAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAGGA
Found at i:50280362 original size:48 final size:44
Alignment explanation
Indices: 50280309--50280958 Score: 317
Period size: 45 Copynumber: 14.5 Consensus size: 44
50280299 AAGCTCCGGG
* * *
50280309 GAAAAAGAAAAAGAGGAATAAAAAAGAAGAAAAAAAAAAAGAAAGGA
1 GAAAAAAAAAAAAAAGAA-AAAAAA-AA-AAAAAAAAAAAGAAAGGA
**
50280356 GAAAAAAGAAAAAAAA-AAAAAAAAAAAAAAAGAAAAAA-AAAAAA
1 GAAAAAA-AAAAAAAAGAAAAAAAAAAAAAAA-AAAAAAGAAAGGA
* * *
50280400 GGAAGAAAAAAAAAAG-AAAAAAAAAAAAAAAAAAAA-AAGGGAA
1 GAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAGG-A
50280443 GAAAAAAAAAAAAAA-AAAAGGAAAAAAAAAAAAAAAAA-AAAGGGA
1 GAAAAAAAAAAAAAAGAAAA--AAAAAAAAAAAAAAAAAGAAA-GGA
* * * *
50280488 GAAAAAAAAAAAAAA-AAGAAAAAAAAGAAGAAAAAGGAGAA--A
1 GAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGA-AAGGA
* *
50280530 -AAAAAAAAAAAAAAGAAAAGAAAAAAAAAAAAAGAGAGAAAGGA
1 GAAAAAAAAAAAAAAGAAAA-AAAAAAAAAAAAAAAAAGAAAGGA
* *
50280574 GGGAAAGGAAAAAAAAAAAGAGGGAAAAAAAAAAACCAAAAAAAGGAAAAGGA
1 --GAAA--AAAAAAAAAAAGA---AAAAAAAAAAA-AAAAAAAAAG-AAAGGA
* * * *
50280627 GAGGGAAAAGAAAAAAAGGAAAAAAAGAAAGGAAAAAGAAAA-AAAGG-
1 GA---AAAAAAAAAAAAAGAAAAAAA-AAA-AAAAAAAAAAAGAAAGGA
* * * **** * * *
50280674 G--AAAGAAAAAAGAGGAAAAAGGGGAGAAAAAAAGAGTAAAGAA
1 GAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAG-AAAGGA
** * * *
50280717 GAAAAAAAAAAAAGAAGGAAAGAAGGAAAAAAGACAAAAAGAAAGAAA
1 GAAAAAAAAAAAA-AA-GAAA-AAAAAAAAAAAAAAAAAAGAAAG-GA
* * **
50280765 GAAAAAACAAAAAAAA-AAAACAAGAAAAAAAAAAAGAAGAAAAAAA
1 GAAAAAA-AAAAAAAAGAAAA-AAAAAAAAAAAAAAAAAG-AAAGGA
* * * * ********
50280811 GAAAAAAAAAAAAATGAAAAACTAGGAGAAAAAAATAATTTTTTTTA
1 GAAAAAAAAAAAAAAGAAAAA--A-AAAAAAAAAAAAAAAGAAAGGA
50280858 TCGAAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAA-AAA--A
1 --GAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAGGA
50280900 -AAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAA-AAA--A
1 GAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAGGA
50280939 -AAAAAAAAAAAAAA-AAAAAA
1 GAAAAAAAAAAAAAAGAAAAAA
50280959 CAGGGAGTCA
Statistics
Matches: 474, Mismatches: 82, Indels: 102
0.72 0.12 0.16
Matches are distributed among these distances:
39 59 0.12
40 7 0.01
41 14 0.03
42 35 0.07
43 68 0.14
44 16 0.03
45 76 0.16
46 40 0.08
47 24 0.05
48 48 0.10
49 39 0.08
50 9 0.02
51 11 0.02
52 20 0.04
53 6 0.01
54 2 0.00
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (44 bp):
GAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAGGA
Found at i:50280375 original size:43 final size:41
Alignment explanation
Indices: 50280328--50280958 Score: 266
Period size: 36 Copynumber: 14.5 Consensus size: 41
50280318 AAAGAGGAAT
*
50280328 AAAAAAGAAGAAAAAAAAAAAGAAAGGAGAAAAAAGAAAAAAA
1 AAAAAAAAAGAAAAAAAAAAAGAAAGGAG-AAAAA-AAAAAAA
* * **
50280371 AAAAAAAAAAAAAAAAGAAAAAAAAAAAAGGAAGAAAAAAAAAA
1 AAAAAAAAAGAAAAAA-AAAAAGAAAGGA-GAA-AAAAAAAAAA
*
50280415 GAAAAAAAA-AAAAAAAAAAA-AAAGG-GAAGAAAAAAAAAA
1 AAAAAAAAAGAAAAAAAAAAAGAAAGGAGAA-AAAAAAAAAA
* *
50280454 AAAAAAAAGGAAAAAAAAAAA-AAA--AAAAAAGGGAGAAAAAAA
1 AAAAAAAAAGAAAAAAAAAAAGAAAGGAGAAAA---A-AAAAAAA
*
50280496 AAAAAAAAAGAAAAAAAAGAAGAAAAAGGAGAAAAAAAAAAAA
1 AAAAAAAAAGAAAAAAAA-AA-AGAAAGGAGAAAAAAAAAAAA
50280539 AAAAAGAAAAGAAAAAAAAAAAAAGAGAGAAAGGAGGGAAAGGAAAAAAAAA
1 AAAAA-AAAAG----AAAAAAAAA-A-AGAAAGGA--GAAA--AAAAAAAAA
*
50280591 AAGAGGGAAAAAAAAAAACCAAAAAAAGGAAAAGGAGAGGGAAAAGAAAAAAA
1 AA-A---AAAAAAGAAAA--AAAAAAA-G-AAAGGAGA---AAAA-AAAAAAA
** * * *
50280644 GGAAAAAAAGAAAGGAAAAAGAAAAAAAGG-GAAAGAAAAAAGAG
1 AAAAAAAAAGAAA--AAAAA-AAAGAAAGGAGAAA-AAAAAAAAA
* *** * * *
50280688 GAAAAAGGGGAGAAAAAAAGAGTAAAGAAGAAAAAAAAAAAA
1 AAAAAAAAAGAAAAAAAAAAAG-AAAGGAGAAAAAAAAAAAA
* * *
50280730 GAAGGAAAGAAGGAAAAAAGACAAAAAGAAAGAAAGAAAAAACAAAAAA
1 -AA--AAAAAAAG-AAAAA-A-AAAAAGAAAG-GAGAAAAAA-AAAAAA
* *
50280779 AAAAAACAAGAAAAAAAAAAAG-AA-GA-AAAAAAGAAAAA
1 AAAAAAAAAGAAAAAAAAAAAGAAAGGAGAAAAAAAAAAAA
* ** **
50280817 AAAAAAAATGAAAAACTAGGAGAAA--A-AAATAATTTTTTTTATCGAAAAAA
1 AAAAAAAAAGAAAAAAAAAAAGAAAGGAGAAA-AA--------A---AAAAAA
50280867 AAAAAAAAA-AAAAAAAAAAA-AAA--A-AAAAAAAAAAAA
1 AAAAAAAAAGAAAAAAAAAAAGAAAGGAGAAAAAAAAAAAA
50280903 AAAAAAAAA-AAAAAAAAAAA-AAA--A-AAAAAAAAAAAA
1 AAAAAAAAAGAAAAAAAAAAAGAAAGGAGAAAAAAAAAAAA
50280939 AAAAAAAAA-AAAAAAAAAAA
1 AAAAAAAAAGAAAAAAAAAAA
50280959 CAGGGAGTCA
Statistics
Matches: 471, Mismatches: 54, Indels: 133
0.72 0.08 0.20
Matches are distributed among these distances:
36 62 0.13
38 27 0.06
39 34 0.07
40 15 0.03
41 6 0.01
42 47 0.10
43 45 0.10
44 49 0.10
45 19 0.04
46 9 0.02
47 16 0.03
48 45 0.10
49 26 0.06
50 20 0.04
51 8 0.02
52 16 0.03
53 19 0.04
54 2 0.00
55 4 0.01
56 2 0.00
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (41 bp):
AAAAAAAAAGAAAAAAAAAAAGAAAGGAGAAAAAAAAAAAA
Found at i:50280382 original size:39 final size:37
Alignment explanation
Indices: 50280311--50280958 Score: 288
Period size: 39 Copynumber: 16.7 Consensus size: 37
50280301 GCTCCGGGGA
* * *
50280311 AAAAGAAAAAGAGGAATAAAAAAGAAGAAAAAAAAAAAG
1 AAAAGAAAAA-A-GAAAAAAAAAAAAAAAAAAAAAAAAG
50280350 AAAGGAGAAAAAAG-AAAAAAAAAAAAAAAAAAAAAAAG
1 AAA--AGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAG
*
50280388 AAAAAAAAAAAAGGAAGAAAAAAAAAAGAAAAAAAAAAAA-
1 -AAAAGAAAAAA-GAA-AAAAAAAAAA-AAAAAAAAAAAAG
** * *
50280428 AAAA-AAAAAAGGGAAGAAAAAAAAAAAAAAAAAAGG
1 AAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAG
* *
50280464 AAAAAAAAAAAAAAAAAAAAGGGAGAAAAAAAAAAAAAAAAG
1 -AAAAGAAAAAAGAAAAAAA---A-AAAAAAAAAAAAAAAAG
*
50280506 AAAA-AAAAGAAGAAAAAGGAGAAAAAAAAAAAAAAAAAG
1 AAAAGAAAA-AAGAAAAA--AAAAAAAAAAAAAAAAAAAG
* * ** *** *
50280545 AAAAGAAAAAA-AAAAAAAGAGAGAAAGGAGGGAAAGG
1 AAAAGAAAAAAGAAAAAAA-AAAAAAAAAAAAAAAAAG
* *
50280582 AAAAAAAAAAAGAGGGAAAAAAAAAAACCAAAAAAAGGAAAAG
1 AAAAGAAAAAAGA---AAAAAAAAAAA--AAAAAAA-AAAAAG
* * ** **
50280625 GAGAGGGAAAAGAAAAAAAGGAAAAAAAGAAAGGAAAAAG
1 AAAAGAAAAAAGAAAAAAA--AAAAAAA-AAAAAAAAAAG
* * *
50280665 AAAA-AAAGGGAAAGAAAAAAGAGGAAAAAGGGGAGAAAAAAAGAG
1 AAAAGAAA---AAAGAAAAAA-A--AAAAA---AAAAAAAAAAAAG
* * **
50280710 TAAAGAAGAAAA-AAAAAAAAGAAGGAAAGAAGGAAAAAAG
1 AAAAGAA-AAAAGAAAAAAAA-AA--AAAAAAAAAAAAAAG
* *
50280750 ACAA-AAAGAAAGAAAGAAAAAACAAAAAAAAAAAACAAG
1 AAAAGAAA-AAAGAAA-AAAAAA-AAAAAAAAAAAAAAAG
* * *
50280789 AAAAAAAAAAAGAAGAAAAAAAGAAAAAAAAAAAAATG
1 AAAAGAAAAAAGAA-AAAAAAAAAAAAAAAAAAAAAAG
* ** ****** ***
50280827 AAAA-ACTAGGAGAAAAAAATAATTTTTTTTATCGAAAAA-
1 AAAAGA-AAAAAGAAAAAAA-AA--AAAAAAAAAAAAAAAG
50280866 AAAA-AAAAAA-AAAAAAAAAAAAAAAAAAAAAAAA-
1 AAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAG
50280900 AAAA-AAAAAA-AAAAAAAAAAAAAAAAAAAAAAAA-
1 AAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAG
50280934 AAAA-AAAAAA-AAAAAAAAAAAAAAA
1 AAAAGAAAAAAGAAAAAAAAAAAAAAA
50280959 CAGGGAGTCA
Statistics
Matches: 467, Mismatches: 91, Indels: 107
0.70 0.14 0.16
Matches are distributed among these distances:
34 65 0.14
35 11 0.02
36 12 0.03
37 45 0.10
38 71 0.15
39 72 0.15
40 61 0.13
41 48 0.10
42 35 0.07
43 30 0.06
44 3 0.01
45 10 0.02
46 3 0.01
47 1 0.00
ACGTcount: A:0.82, C:0.01, G:0.15, T:0.02
Consensus pattern (37 bp):
AAAAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAG
Found at i:50280398 original size:84 final size:80
Alignment explanation
Indices: 50280310--50280562 Score: 302
Period size: 82 Copynumber: 3.1 Consensus size: 80
50280300 AGCTCCGGGG
* * *
50280310 AAAAAGAAAAAGAGGAATAAAAAAGAAGAAAAAAAAAAAGAAAGGAGAAAAAAGAAAAAAAAAAA
1 AAAAAAAAAAAGAGGAAAAAAAAAGAA-AAAAAAAAAAA-AAA-GAGAAAAAGGAAAAAAAAAAA
50280375 AAAAAAAAAAAAGAAAAA
63 AAAAAAAAAAAAGAAAAA
**
50280393 AAAAAAAGGAAGA--AAAAAAAAAGAAAAAAAAAAAAAAAA-A-AAAAAGGGAAGAAAAAAAAAA
1 AAAAAAAAAAAGAGGAAAAAAAAAGAAAAAAAAAAAAAAAAGAGAAAAA-GGAA-AAAAAAAAAA
*
50280454 AAAAAAAAGGAAAAAAAAA
64 AAAAAAAA--AAAGAAAAA
50280473 AAAAAAAAAAAG-GGAGAAAAAAAA-AAAAAAAAGAAAAAAAAGAAGAAAAAGGAGAAAAAAAAA
1 AAAAAAAAAAAGAGGA-AAAAAAAAGAAAAAAAA-AAAAAAAAG-AGAAAAAGGA-AAAAAAAAA
*
50280536 AAAAAAAAGAAAAGAAAAA
62 AAAAAAAAAAAAAGAAAAA
50280555 AAAAAAAA
1 AAAAAAAA
50280563 GAGAGAAAGG
Statistics
Matches: 148, Mismatches: 10, Indels: 25
0.81 0.05 0.14
Matches are distributed among these distances:
76 5 0.03
77 4 0.03
78 18 0.12
79 3 0.02
80 29 0.20
81 20 0.14
82 32 0.22
83 10 0.07
84 21 0.14
85 6 0.04
ACGTcount: A:0.86, C:0.00, G:0.13, T:0.00
Consensus pattern (80 bp):
AAAAAAAAAAAGAGGAAAAAAAAAGAAAAAAAAAAAAAAAAGAGAAAAAGGAAAAAAAAAAAAAA
AAAAAAAAAGAAAAA
Found at i:50280586 original size:84 final size:81
Alignment explanation
Indices: 50280330--50280817 Score: 307
Period size: 76 Copynumber: 5.9 Consensus size: 81
50280320 AGAGGAATAA
* * * *
50280330 AAAAGAAGAAAAAAAAAAAGAAAGGAGAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAA
1 AAAA-AAGAAAAAAAAAAAAAAAGAAGAAAAAGGAGAAAAAAAAAAAAAAAAAAAAAGAAAAAAA
*
50280395 AAAAAGGAAGAAA--A-
65 AAAAAAGAAGAAAGGAG
*
50280409 AAAAAAGAAAAAAAAAAAAAAA-AA-AAAAAGG-GAAGAAAAAAAAAAAAAAAAAAGGAAAAAAA
1 AAAAAAGAAAAAAAAAAAAAAAGAAGAAAAAGGAGAA-AAAAAAAAAAAAAAAAAAAGAAAAAAA
* *
50280471 AAAAAAAAAAAAAGGGAG
65 AAAAAAGAAGAAA-GGAG
*
50280489 AAAAAAAAAAAAAAAAGAAAAAAAAGAAGAAAAAGGAGAAAAAAAAAAAAAAAAAGAAAAGAAAA
1 --AAAAAAGAAAAAAA-AAAAAAAAGAAGAAAAAGGAGAAAAAAAAAAAAAAAAA-AAAAGAAAA
50280554 AAAAAAAAAGAGAGAAAGGAG
62 AAAAAAAAAGA-AGAAAGGAG
** * * ** * ** * * ***
50280575 GGAAAGGAAAAAAAAAAAGAGGGAAAAAAAAAAACCAAAAAAAGGAAAAGGAGAGGGAAAAGAAA
1 AAAAAAGAAAAAAAAAAAAAAAGAAGAAAAAGGA-GAAAAAAA--AAAA--AAAAAAAAAAGAAA
*
50280640 AAAAGGAAAAA-AAGAAAGGA-
61 AAAA-AAAAAAGAAGAAAGGAG
* * * * * ** *
50280660 AAAAGAA-AAAAAGGGAAAGAAAAAAGAGGAAAAAGG-G-GAGAAAAAAAGAGTAAAGAAG-AAA
1 AAAA-AAGAAAAA---AAAAAAAAAAGAAGAAAAAGGAGAAAAAAAAAAAAAAAAAAAAAGAAAA
*
50280721 AAAAAAAAAGAAGGAAAGAAGG
62 AAAAAAAAAGAA-GAAAGGA-G
* * * * ** *
50280743 AAAAAAGACAAAAAGAAAGAAAGAAAAAACAAAAAAAAAAAACAAGAAAAAAAAAAAGAAGAAAA
1 AAAAAAGAAAAAAAAAAAAAAAGAAGAAA-AAGGAGAAAAAA-AA-AAAAAAAAAAA-AAGAAAA
50280808 AAAGAAAAAA
62 AAA-AAAAAA
50280818 AAAAAAATGA
Statistics
Matches: 307, Mismatches: 66, Indels: 63
0.70 0.15 0.14
Matches are distributed among these distances:
75 2 0.01
76 42 0.14
77 1 0.00
78 17 0.06
79 10 0.03
80 20 0.07
81 12 0.04
82 15 0.05
83 37 0.12
84 21 0.07
85 40 0.13
86 41 0.13
87 23 0.07
88 26 0.08
ACGTcount: A:0.81, C:0.01, G:0.18, T:0.00
Consensus pattern (81 bp):
AAAAAAGAAAAAAAAAAAAAAAGAAGAAAAAGGAGAAAAAAAAAAAAAAAAAAAAAGAAAAAAAA
AAAAAGAAGAAAGGAG
Found at i:50281838 original size:9 final size:8
Alignment explanation
Indices: 50281825--50281883 Score: 63
Period size: 8 Copynumber: 7.8 Consensus size: 8
50281815 ACATTTCTCG
50281825 TAAAAAAA
1 TAAAAAAA
50281833 GT-AAAAAA
1 -TAAAAAAA
50281841 -AAAAAAA
1 TAAAAAAA
50281848 TAAAAAAA
1 TAAAAAAA
**
50281856 TTTAAAAA
1 TAAAAAAA
50281864 TAAAAAAA
1 TAAAAAAA
50281872 -AAAAAAA
1 TAAAAAAA
50281879 -AAAAA
1 TAAAAA
50281884 TTAAAAAATC
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
7 18 0.41
8 25 0.57
9 1 0.02
ACGTcount: A:0.86, C:0.00, G:0.02, T:0.12
Consensus pattern (8 bp):
TAAAAAAA
Found at i:50281840 original size:8 final size:7
Alignment explanation
Indices: 50281827--50281892 Score: 62
Period size: 8 Copynumber: 9.0 Consensus size: 7
50281817 ATTTCTCGTA
50281827 AAAAAAGT
1 AAAAAA-T
*
50281835 AAAAAAA
1 AAAAAAT
50281842 AAAAAAT
1 AAAAAAT
50281849 AAAAAAATT
1 -AAAAAA-T
*
50281858 TAAAAAT
1 AAAAAAT
50281865 AAAAAA-
1 AAAAAAT
*
50281871 AAAAAAA
1 AAAAAAT
50281878 AAAAAATT
1 AAAAAA-T
50281886 AAAAAAT
1 AAAAAAT
50281893 CCGGAGTAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
6 6 0.12
7 19 0.39
8 23 0.47
9 1 0.02
ACGTcount: A:0.85, C:0.00, G:0.02, T:0.14
Consensus pattern (7 bp):
AAAAAAT
Found at i:50281879 original size:27 final size:28
Alignment explanation
Indices: 50281837--50281890 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 28
50281827 AAAAAAGTAA
*
50281837 AAAAAAAAAAATAAAAAAATTTAAAAAT
1 AAAAAAAAAAATAAAAAAAATTAAAAAT
50281865 AAAAAAAAAAA-AAAAAAAATTAAAAA
1 AAAAAAAAAAATAAAAAAAATTAAAAA
50281891 ATCCGGAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
27 14 0.56
28 11 0.44
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (28 bp):
AAAAAAAAAAATAAAAAAAATTAAAAAT
Found at i:50281880 original size:28 final size:29
Alignment explanation
Indices: 50281827--50281892 Score: 98
Period size: 28 Copynumber: 2.2 Consensus size: 29
50281817 ATTTCTCGTA
50281827 AAAAAAGTAAAAAAAAAAAAATAAAAAAATT
1 AAAAAA-T-AAAAAAAAAAAATAAAAAAATT
*
50281858 TAAAAATAAAAAAAAAAAA-AAAAAAATT
1 AAAAAATAAAAAAAAAAAATAAAAAAATT
50281886 AAAAAAT
1 AAAAAAT
50281893 CCGGAGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 15 0.45
29 12 0.36
30 1 0.03
31 5 0.15
ACGTcount: A:0.85, C:0.00, G:0.02, T:0.14
Consensus pattern (29 bp):
AAAAAATAAAAAAAAAAAATAAAAAAATT
Found at i:50281891 original size:1 final size:1
Alignment explanation
Indices: 50281835--50281883 Score: 53
Period size: 1 Copynumber: 49.0 Consensus size: 1
50281825 TAAAAAAAGT
* *** *
50281835 AAAAAAAAAAAAATAAAAAAATTTAAAAATAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50281884 TTAAAAAATC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (1 bp):
A
Found at i:50282028 original size:23 final size:22
Alignment explanation
Indices: 50281985--50282028 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
50281975 ACATTGTCCC
* *
50281985 AATTTAATTAAATAAATTTAAG
1 AATTAAATTAAATAAAATTAAG
50282007 AATTAAATTCAAATAAAATTAA
1 AATTAAATT-AAATAAAATTAA
50282029 TGATGTCCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
AATTAAATTAAATAAAATTAAG
Found at i:50282422 original size:27 final size:27
Alignment explanation
Indices: 50282392--50282469 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
50282382 AGGAGAAAAC
50282392 AGAAAAAAAGGATAGAGAAAAAGAA-GA
1 AGAAAAAAAGGA-AGAGAAAAAGAAGGA
* * * *
50282419 AGAAAAAAGGGAAAAAAAAAAAAAGGA
1 AGAAAAAAAGGAAGAGAAAAAGAAGGA
* * *
50282446 AGAAAAAGAGAAAGAGGAAAAGAA
1 AGAAAAAAAGGAAGAGAAAAAGAA
50282470 AAGGGGAGTA
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
26 9 0.23
27 30 0.77
ACGTcount: A:0.73, C:0.00, G:0.26, T:0.01
Consensus pattern (27 bp):
AGAAAAAAAGGAAGAGAAAAAGAAGGA
Found at i:50282453 original size:26 final size:26
Alignment explanation
Indices: 50282409--50282458 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
50282399 AAGGATAGAG
* *
50282409 AAAAAGAAGAAGAAAAAAGGGAAAAA
1 AAAAAAAAGAAGAAAAAAGAGAAAAA
50282435 AAAAAAAAGGAAG-AAAAAGAGAAA
1 AAAAAAAA-GAAGAAAAAAGAGAAA
50282459 GAGGAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (26 bp):
AAAAAAAAGAAGAAAAAAGAGAAAAA
Found at i:50282465 original size:33 final size:29
Alignment explanation
Indices: 50282409--50282471 Score: 72
Period size: 33 Copynumber: 2.0 Consensus size: 29
50282399 AAGGATAGAG
*
50282409 AAAAAGAAGAAGAAAAAAGGGAAAAAAAA
1 AAAAAGAAGAAAAAAAAAGGGAAAAAAAA
*
50282438 AAAAAGGAAGAAAAAGAGAAAGAGGAAAAGAAA
1 AAAAA-GAAGAAAAA-A-AAAG-GGAAAAAAAA
50282471 A
1 A
50282472 GGGGAGTAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.18
30 8 0.29
31 1 0.04
32 4 0.14
33 10 0.36
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (29 bp):
AAAAAGAAGAAAAAAAAAGGGAAAAAAAA
Found at i:50283578 original size:1 final size:1
Alignment explanation
Indices: 50283572--50286962 Score: 5369
Period size: 1 Copynumber: 3391.0 Consensus size: 1
50283562 ATCCGTGGTG
* **
50283572 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAATGAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * *** **
50283637 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAATAAAAAAAAAAAAAAAAACTGAGGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50283702 AAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50283767 AAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50283832 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50283897 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50283962 AAAAAAAAAATAAAAAAAAAAAAAAAAAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAATAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50284027 AAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50284092 AATAAAAAAAAATAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
50284157 AAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAATAAAAAAAAAATAAAAAATAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
50284222 AAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAATAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
50284287 AAAAAAAAAATAAATAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAATAAAAAAATAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * ** *
50284352 AATAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAATAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50284417 AAAAAAAAAAAAAAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50284482 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50284547 AAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50284612 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50284677 AAAATAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
50284742 AAAAAAAAAAAAAATAAAAAAAATAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
50284807 AAAAAAAAAAAAAATAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
50284872 AAAATAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50284937 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50285002 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
50285067 AAAAAAATAAAAAAAAAAAATAAAAAAAAAAAAATAAATAAAAAATAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50285132 AAAAAAATAATAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50285197 AAAAAAAAAAAAAAAAAAAATAAAATATAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50285262 AAAAAAAAATAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * ** * *
50285327 AAAATAAAATAAAAAAAAAAAAAAAATATTAAATAAAAAAAATAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50285392 AAAAAAAAAAAAAAAAAAATAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50285457 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
50285522 AAATAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAATAAAAAAAAAATAAAAATAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50285587 AAAAAAAATAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAATAAATAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
50285652 AAAAAAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50285717 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50285782 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50285847 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAAATATAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50285912 AAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50285977 ATAAAAAAATAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50286042 AAAAAAAAAAAATAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAATAAAAAAAAAAAAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50286107 AAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* **
50286172 AAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50286237 AAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50286302 AAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
50286367 AAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50286432 AAAAAATAAAAATAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAT
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50286497 AAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAATAAAAAAAAAAAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50286562 ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
50286627 AAAAAAAATAAAAAAAAAAAAAAAAAAATAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
50286692 AAAAAAAAAAAAAAAAAAATAAAAAAAATAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * *
50286757 AAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAATAAAAAAAAAATAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
50286822 AAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
50286887 AAATAAAAAAAAAAAAAAAAAAAAAAAATAAAAATAAAAAATAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
50286952 AAAAAAAAAAA
1 AAAAAAAAAAA
50286963 TAATAAATTG
Statistics
Matches: 3089, Mismatches: 301, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 3089 1.00
ACGTcount: A:0.95, C:0.00, G:0.00, T:0.04
Consensus pattern (1 bp):
A
Found at i:50292163 original size:35 final size:35
Alignment explanation
Indices: 50292117--50292183 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
50292107 AATTAATCAA
* *
50292117 CTTTGACAATTGGAGTTCTCGAACAGTCATTGGAG
1 CTTTGACAATTGGAGTTCCCGAACAGCCATTGGAG
50292152 CTTTGACAATTGGAGTTCCCGAACAGCCATTG
1 CTTTGACAATTGGAGTTCCCGAACAGCCATTG
50292184 AATTGGACTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (35 bp):
CTTTGACAATTGGAGTTCCCGAACAGCCATTGGAG
Found at i:50292378 original size:32 final size:30
Alignment explanation
Indices: 50292311--50292395 Score: 84
Period size: 32 Copynumber: 2.8 Consensus size: 30
50292301 TTGTGGCATC
* * *
50292311 TGAAGGGT-CTTTGGTGTGAACACTCAGAT
1 TGAATGGTCCTTTGGTGTGAACACTAAAAT
50292340 TCGAATGGTCCTTTGGGTGTGAACACTAAAAAT
1 T-GAATGGTCCTTT-GGTGTGAACACT-AAAAT
*
50292373 TGAATGGT-CTATTGATGTGAACA
1 TGAATGGTCCT-TTGGTGTGAACA
50292396 AGAGTAGCTG
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
29 1 0.02
30 6 0.13
31 15 0.32
32 21 0.45
33 4 0.09
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (30 bp):
TGAATGGTCCTTTGGTGTGAACACTAAAAT
Found at i:50297136 original size:15 final size:16
Alignment explanation
Indices: 50297113--50297145 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
50297103 TTTGGTTTAA
50297113 ATTTATATATATGATT
1 ATTTATATATATGATT
*
50297129 ATTT-TATATATTATT
1 ATTTATATATATGATT
50297144 AT
1 AT
50297146 CTATGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
ATTTATATATATGATT
Found at i:50300811 original size:26 final size:27
Alignment explanation
Indices: 50300749--50300813 Score: 89
Period size: 26 Copynumber: 2.4 Consensus size: 27
50300739 TATGGTCCAC
50300749 CGAGACAGTAAACACTGGGTAGTCTGT
1 CGAGACAGTAAACACTGGGTAGTCTGT
*
50300776 CGAGATAGTAAACAC-GGGTAGTC-GAT
1 CGAGACAGTAAACACTGGGTAGTCTG-T
*
50300802 CGGGACAGTAAA
1 CGAGACAGTAAA
50300814 TATGGGGACA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.03
26 19 0.56
27 14 0.41
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (27 bp):
CGAGACAGTAAACACTGGGTAGTCTGT
Found at i:50307533 original size:29 final size:29
Alignment explanation
Indices: 50307497--50307560 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
50307487 AAATATCCCT
* * * *
50307497 AAAAAATTTTATGAACTCTATTTCGTT-A
1 AAAAAATTTGACGAACCCTATTTCATTCA
50307525 AAAATAATTTGACGAACCCTATTTCATTCA
1 AAAA-AATTTGACGAACCCTATTTCATTCA
50307555 AAAAAA
1 AAAAAA
50307561 AATAGTAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 4 0.13
29 21 0.70
30 5 0.17
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.34
Consensus pattern (29 bp):
AAAAAATTTGACGAACCCTATTTCATTCA
Found at i:50307728 original size:35 final size:36
Alignment explanation
Indices: 50307687--50307755 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
50307677 AGGGTAAGTT
50307687 TGAAGAACCATTTTT-TTATT-GAAACCTTGTTTGAA
1 TGAAGAA-CATTTTTCTTATTGGAAACCTTGTTTGAA
* * *
50307722 TGAAGAACTTTTTTCTTCTTGGAACCCTTGTTTG
1 TGAAGAACATTTTTCTTATTGGAAACCTTGTTTG
50307756 TCATTTTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 6 0.21
35 11 0.38
36 12 0.41
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (36 bp):
TGAAGAACATTTTTCTTATTGGAAACCTTGTTTGAA
Found at i:50308898 original size:27 final size:26
Alignment explanation
Indices: 50308868--50308952 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
50308858 AACAGAGAAG
50308868 GTCTTTCGGGACAGTAAACACGGGTAA
1 GTCTTT-GGGACAGTAAACACGGGTAA
* *
50308895 GTCTGCTT-GGATAGTAAACACGAGTAA
1 GTCT--TTGGGACAGTAAACACGGGTAA
* * *
50308922 GTCCGTTGGGGCAGTAAACACAGGTAA
1 GT-CTTTGGGACAGTAAACACGGGTAA
50308949 GTCT
1 GTCT
50308953 GTTAAGACAA
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
26 3 0.07
27 40 0.87
28 1 0.02
29 2 0.04
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (26 bp):
GTCTTTGGGACAGTAAACACGGGTAA
Found at i:50312414 original size:29 final size:30
Alignment explanation
Indices: 50312372--50312429 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
50312362 ATATCCCTAT
* *
50312372 TTCATTCAAAAAAAATTT-AGCAACTCTCC
1 TTCAGTCAAAAAAAATTTCAACAACTCTCC
*
50312401 TTCAGTCAATAAAAATTTCAACAACTCTC
1 TTCAGTCAAAAAAAATTTCAACAACTCTC
50312430 TTTGCTTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.41, C:0.24, G:0.03, T:0.31
Consensus pattern (30 bp):
TTCAGTCAAAAAAAATTTCAACAACTCTCC
Found at i:50312445 original size:30 final size:29
Alignment explanation
Indices: 50312372--50312445 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
50312362 ATATCCCTAT
*
50312372 TTCATTCAAAAAAAATTTAGCAACTCTCC
1 TTCATTCAAAAAAAATTTAACAACTCTCC
* * *
50312401 TTCAGTCAATAAAAATTTCAACAACTCTCT
1 TTCATTCAAAAAAAATTT-AACAACTCTCC
50312431 TTGC-TTCAAAAAAAA
1 TT-CATTCAAAAAAAA
50312446 ATCACCAACC
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 16 0.43
30 20 0.54
31 1 0.03
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.31
Consensus pattern (29 bp):
TTCATTCAAAAAAAATTTAACAACTCTCC
Found at i:50312555 original size:35 final size:36
Alignment explanation
Indices: 50312514--50312582 Score: 88
Period size: 35 Copynumber: 1.9 Consensus size: 36
50312504 AGGGTAAGTT
50312514 TGAAGAACCATTTTT-TTATTGAAACC-TTGTTTGAA
1 TGAAGAA-CATTTTTCTTATTGAAACCTTTGTTTGAA
* * *
50312549 TGAAGAACGTTTTTCTTTTTGGAACCTTTGTTTG
1 TGAAGAACATTTTTCTTATTGAAACCTTTGTTTG
50312583 TCATTTTCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
34 6 0.21
35 16 0.55
36 7 0.24
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.46
Consensus pattern (36 bp):
TGAAGAACATTTTTCTTATTGAAACCTTTGTTTGAA
Found at i:50313655 original size:28 final size:28
Alignment explanation
Indices: 50313624--50313680 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
50313614 CAAAACAACT
50313624 TTACTTAAAATCATTACAACCCTATACA
1 TTACTTAAAATCATTACAACCCTATACA
50313652 TTACTTAAAATCATTACAACCCTATACA
1 TTACTTAAAATCATTACAACCCTATACA
50313680 T
1 T
50313681 GCCATAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.33
Consensus pattern (28 bp):
TTACTTAAAATCATTACAACCCTATACA
Found at i:50313688 original size:28 final size:28
Alignment explanation
Indices: 50313629--50313689 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
50313619 CAACTTTACT
* *
50313629 TAAAATCATTACAACCCTATACATTACT
1 TAAAATCATTACAACCCTATACATGACA
*
50313657 TAAAATCATTACAACCCTATACATGCCA
1 TAAAATCATTACAACCCTATACATGACA
50313685 TAAAA
1 TAAAA
50313690 ACCAAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.46, C:0.25, G:0.02, T:0.28
Consensus pattern (28 bp):
TAAAATCATTACAACCCTATACATGACA
Found at i:50315000 original size:43 final size:44
Alignment explanation
Indices: 50314946--50315066 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 44
50314936 TTTCTGATAA
50314946 GTGATT-TCGTGTAAGACCACGTCTGGGACGTTGGCATCGA-CTT
1 GTGATTATCGTGTAAGACCACGTCTGGGACGTTGGCATCGATC-T
* * *
50314989 GTG-TTATCGTGTAAGACC-CTCTCTGGGACAG-CGACATCGATCT
1 GTGATTATCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATCT
* * *
50315032 GTGATTA-CATGTAAGACCACGTCTGGAACTTTGGC
1 GTGATTATCGTGTAAGACCACGTCTGGGACGTTGGC
50315067 TTTGTACGAA
Statistics
Matches: 62, Mismatches: 9, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
42 3 0.05
43 53 0.85
44 6 0.10
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.29
Consensus pattern (44 bp):
GTGATTATCGTGTAAGACCACGTCTGGGACGTTGGCATCGATCT
Found at i:50317462 original size:24 final size:25
Alignment explanation
Indices: 50317435--50317499 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
50317425 ACATTTTCCA
50317435 TCAATTCATCCTTTGCA-TATATCG
1 TCAATTCATCCTTTGCATTATATCG
* *
50317459 TCAATTCAACCTTTGCATTTTATCG
1 TCAATTCATCCTTTGCATTATATCG
* *
50317484 TTAATTCATCATTTGC
1 TCAATTCATCCTTTGC
50317500 CACAGAACGA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
24 16 0.46
25 19 0.54
ACGTcount: A:0.25, C:0.23, G:0.08, T:0.45
Consensus pattern (25 bp):
TCAATTCATCCTTTGCATTATATCG
Found at i:50317489 original size:25 final size:24
Alignment explanation
Indices: 50317435--50317491 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
50317425 ACATTTTCCA
*
50317435 TCAATTCATCCTTTGCATATATCG
1 TCAATTCAACCTTTGCATATATCG
*
50317459 TCAATTCAACCTTTGCATTTTATCG
1 TCAATTCAACCTTTGCA-TATATCG
*
50317484 TTAATTCA
1 TCAATTCA
50317492 TCATTTGCCA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 16 0.55
25 13 0.45
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (24 bp):
TCAATTCAACCTTTGCATATATCG
Found at i:50324663 original size:18 final size:18
Alignment explanation
Indices: 50324640--50324675 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
50324630 TAATTTAATT
*
50324640 TCTTATTTTTAACAATAA
1 TCTTATTTTCAACAATAA
50324658 TCTTATTTTCAACAATAA
1 TCTTATTTTCAACAATAA
50324676 ATATTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.47
Consensus pattern (18 bp):
TCTTATTTTCAACAATAA
Found at i:50328534 original size:18 final size:17
Alignment explanation
Indices: 50328501--50328539 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
50328491 TTTTATAAAT
50328501 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
50328519 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
50328536 TGTG
1 TGTG
50328540 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Done.