Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 163 of 211
Found at i:50916759 original size:2 final size:2
Alignment explanation
Indices: 50916752--50916812 Score: 113
Period size: 2 Copynumber: 30.5 Consensus size: 2
50916742 ATTTTATCAT
50916752 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
*
50916794 AC AC AG AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC A
50916813 TATATTTAAG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.51, C:0.48, G:0.02, T:0.00
Consensus pattern (2 bp):
AC
Found at i:50920001 original size:25 final size:25
Alignment explanation
Indices: 50919967--50920015 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
50919957 TTTGATGAGT
50919967 TAATGCTTTGAAACCCTATTCTGGG
1 TAATGCTTTGAAACCCTATTCTGGG
50919992 TAATGCTTTGAAACCCTATTCTGG
1 TAATGCTTTGAAACCCTATTCTGG
50920016 CGACAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (25 bp):
TAATGCTTTGAAACCCTATTCTGGG
Found at i:50921209 original size:30 final size:30
Alignment explanation
Indices: 50921169--50921227 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
50921159 TTAACAAGCA
50921169 AAATGACTCTAAAATAATAACAAAATTAAT
1 AAATGACTCTAAAATAATAACAAAATTAAT
*
50921199 AAATGCCTCTAAAATAATAACAAAATTAA
1 AAATGACTCTAAAATAATAACAAAATTAA
50921228 CAATAAAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.25
Consensus pattern (30 bp):
AAATGACTCTAAAATAATAACAAAATTAAT
Found at i:50921285 original size:22 final size:22
Alignment explanation
Indices: 50921260--50921302 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
50921250 TATCCAAACA
50921260 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
** *
50921282 ATAATAGTAAAATGGTAGCAA
1 ATAATAACAAAATAGTAGCAA
50921303 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:50926891 original size:11 final size:11
Alignment explanation
Indices: 50926875--50926900 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
50926865 GTCGCCTCTT
50926875 CCTTCGTTCTA
1 CCTTCGTTCTA
50926886 CCTTCGTTCTA
1 CCTTCGTTCTA
50926897 CCTT
1 CCTT
50926901 TGCCTCCCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.38, G:0.08, T:0.46
Consensus pattern (11 bp):
CCTTCGTTCTA
Found at i:50931494 original size:32 final size:32
Alignment explanation
Indices: 50931458--50931532 Score: 100
Period size: 32 Copynumber: 2.3 Consensus size: 32
50931448 ATATTATACC
*
50931458 AGCCCAAACCCTTTTAC-CT-TATTTCCCTTCAA
1 AGCCCAAACCCTTTTACTCTAT-TTTCCC-CCAA
*
50931490 AGCCCAAACCTTTTTACTCTATTTTCCCCCAA
1 AGCCCAAACCCTTTTACTCTATTTTCCCCCAA
50931522 AGCCCAAACCC
1 AGCCCAAACCC
50931533 CATCCCCCTC
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
32 29 0.76
33 8 0.21
34 1 0.03
ACGTcount: A:0.27, C:0.40, G:0.04, T:0.29
Consensus pattern (32 bp):
AGCCCAAACCCTTTTACTCTATTTTCCCCCAA
Found at i:50931659 original size:42 final size:42
Alignment explanation
Indices: 50931613--50931702 Score: 135
Period size: 42 Copynumber: 2.1 Consensus size: 42
50931603 TTGTCTATCC
* ** *
50931613 AAACCCCTAAATTTATGTTTCTTCTTCAAAAATCCTTAAATT
1 AAACCCCCAAATCCATGTTTCTTCTTCAAAAATCCCTAAATT
*
50931655 AAACCCCCAAATCCATTTTTCTTCTTCAAAAATCCCTAAATT
1 AAACCCCCAAATCCATGTTTCTTCTTCAAAAATCCCTAAATT
50931697 AAACCC
1 AAACCC
50931703 TCCATTCTTC
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.28, G:0.01, T:0.34
Consensus pattern (42 bp):
AAACCCCCAAATCCATGTTTCTTCTTCAAAAATCCCTAAATT
Found at i:50931708 original size:37 final size:39
Alignment explanation
Indices: 50931630--50931718 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 39
50931620 TAAATTTATG
*
50931630 TTTCTTCTTCAAAAATCCTTAAATTAAACCCCCAAATCCATT
1 TTTCTTCTTCAAAAATCCCTAAATTAAA-CCCC--ATCCATT
50931672 TTTCTTCTTCAAAAATCCCTAAATTAAA-CCC-TCCATT
1 TTTCTTCTTCAAAAATCCCTAAATTAAACCCCATCCATT
*
50931709 CTTCTTCTTC
1 TTTCTTCTTC
50931719 TTCTTCATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
37 15 0.33
40 3 0.07
42 27 0.60
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.39
Consensus pattern (39 bp):
TTTCTTCTTCAAAAATCCCTAAATTAAACCCCATCCATT
Found at i:50931805 original size:5 final size:5
Alignment explanation
Indices: 50931795--50931820 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
50931785 AAATAAATAT
50931795 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
50931821 ATTCTATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:50934777 original size:64 final size:66
Alignment explanation
Indices: 50934644--50934781 Score: 165
Period size: 64 Copynumber: 2.1 Consensus size: 66
50934634 AGATGTCTCC
* * *
50934644 TTCCCCTGCATAAAGATGACATAAAGATGACAAAGCAACATTTACACCTATGTTACCAAAAACTG
1 TTCCCCTGCATAAAGAT-AC--AAAGATGACAAAGCAACACTTACACCTATATTACCAAAAACTA
50934709 CTAT
63 CTAT
* * *
50934713 TTCCCCTGCATAAAGAT-C-AAGATGACAAAGCAACACTTACACTTCTATTACCATAAA-TCACT
1 TTCCCCTGCATAAAGATACAAAGATGACAAAGCAACACTTACACCTATATTACCAAAAACT-ACT
50934775 AT
65 AT
50934777 TTCCC
1 TTCCC
50934782 TATCAATTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
63 1 0.02
64 43 0.69
67 1 0.02
69 17 0.27
ACGTcount: A:0.38, C:0.26, G:0.09, T:0.26
Consensus pattern (66 bp):
TTCCCCTGCATAAAGATACAAAGATGACAAAGCAACACTTACACCTATATTACCAAAAACTACTA
T
Found at i:50942511 original size:24 final size:24
Alignment explanation
Indices: 50942479--50942564 Score: 136
Period size: 24 Copynumber: 3.6 Consensus size: 24
50942469 TCGTTCTGTG
*
50942479 GCAAAGGATGAATTGATGGTAAAT
1 GCAAAGGATGAATTGACGGTAAAT
50942503 GCAAAGGATGAATTGACGGTAAAT
1 GCAAAGGATGAATTGACGGTAAAT
* * *
50942527 TCAAAGGAAGAATTGACGGTAAAA
1 GCAAAGGATGAATTGACGGTAAAT
50942551 GCAAAGGATGAATT
1 GCAAAGGATGAATT
50942565 AATGGCAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 56 1.00
ACGTcount: A:0.44, C:0.07, G:0.28, T:0.21
Consensus pattern (24 bp):
GCAAAGGATGAATTGACGGTAAAT
Found at i:50942575 original size:48 final size:48
Alignment explanation
Indices: 50942480--50942575 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
50942470 CGTTCTGTGG
* * * * *
50942480 CAAAGGATGAATTGATGGTAAATGCAAAGGATGAATTGACGGTAAATT
1 CAAAGGAAGAATTGACGGTAAAAGCAAAGGATGAATTAACGGCAAATT
*
50942528 CAAAGGAAGAATTGACGGTAAAAGCAAAGGATGAATTAATGGCAAATT
1 CAAAGGAAGAATTGACGGTAAAAGCAAAGGATGAATTAACGGCAAATT
50942576 ACCCAAGTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.45, C:0.07, G:0.26, T:0.22
Consensus pattern (48 bp):
CAAAGGAAGAATTGACGGTAAAAGCAAAGGATGAATTAACGGCAAATT
Found at i:50942669 original size:20 final size:20
Alignment explanation
Indices: 50942640--50942695 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
50942630 TTTAGCTCTC
* *
50942640 ATGAGCTTCCATTAACTCAT
1 ATGAGTTTCCATTAACCCAT
* *
50942660 ATGAGTTTCCGTTCAACCCTT
1 ATGAGTTTCCATT-AACCCAT
*
50942681 ATGGGTTTCCATTAA
1 ATGAGTTTCCATTAA
50942696 GCTTTTTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (20 bp):
ATGAGTTTCCATTAACCCAT
Found at i:50942688 original size:21 final size:21
Alignment explanation
Indices: 50942659--50942849 Score: 73
Period size: 21 Copynumber: 9.1 Consensus size: 21
50942649 CATTAACTCA
50942659 TATGAGTTTCCGTTCAACCCT
1 TATGAGTTTCCGTTCAACCCT
* * **
50942680 TATGGGTTTCCATT-AAGCTTT
1 TATGAGTTTCCGTTCAA-CCCT
* ** * *
50942701 TTTGAACTTCAGTTTAACCCT
1 TATGAGTTTCCGTTCAACCCT
* *
50942722 TATGGGTTTCCGTTCAACTCT
1 TATGAGTTTCCGTTCAACCCT
* * * *
50942743 TTTGAGCTTCAC-TTTAGCCCT
1 TATGAGTTTC-CGTTCAACCCT
* * * *
50942764 TATGGGTTTCCATTCAGCTCT
1 TATGAGTTTCCGTTCAACCCT
* * * ** *
50942785 TTTAAGCTTCAATTTAACCCT
1 TATGAGTTTCCGTTCAACCCT
* * *
50942806 TATGGGTTTTCGTTCATCTCC-
1 TATGAGTTTCCGTTCAAC-CCT
*
50942827 TATGAGCTTCCGTTCAACCCT
1 TATGAGTTTCCGTTCAACCCT
50942848 TA
1 TA
50942850 CGGGTTTCTA
Statistics
Matches: 113, Mismatches: 51, Indels: 12
0.64 0.29 0.07
Matches are distributed among these distances:
20 5 0.04
21 103 0.91
22 5 0.04
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (21 bp):
TATGAGTTTCCGTTCAACCCT
Found at i:50942835 original size:42 final size:42
Alignment explanation
Indices: 50942674--50942857 Score: 208
Period size: 42 Copynumber: 4.4 Consensus size: 42
50942664 GTTTCCGTTC
* * *
50942674 AACCCTTATGGGTTTCCATT-AAGCTTTTTTGAACTTCAGTTT
1 AACCCTTATGGGTTTCCGTTCAA-CTCTTTTGAGCTTCAGTTT
*
50942716 AACCCTTATGGGTTTCCGTTCAACTCTTTTGAGCTTCACTTT
1 AACCCTTATGGGTTTCCGTTCAACTCTTTTGAGCTTCAGTTT
* * * * *
50942758 AGCCCTTATGGGTTTCCATTCAGCTCTTTTAAGCTTCAATTT
1 AACCCTTATGGGTTTCCGTTCAACTCTTTTGAGCTTCAGTTT
* * * * * *
50942800 AACCCTTATGGGTTTTCGTTCATCTCCTATGAGCTTCCGTTC
1 AACCCTTATGGGTTTCCGTTCAACTCTTTTGAGCTTCAGTTT
*
50942842 AACCCTTACGGGTTTC
1 AACCCTTATGGGTTTC
50942858 TATTTAGCAC
Statistics
Matches: 120, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
42 118 0.98
43 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (42 bp):
AACCCTTATGGGTTTCCGTTCAACTCTTTTGAGCTTCAGTTT
Found at i:50942878 original size:84 final size:84
Alignment explanation
Indices: 50942653--50942884 Score: 277
Period size: 84 Copynumber: 2.8 Consensus size: 84
50942643 AGCTTCCATT
* * * *
50942653 AACTCATATGAGTTTCCGTTCAACCCTTATGGGTTTCCATTAAGCTTTTTTGAACTTCAGTTTAA
1 AACTCCTATGAGCTTCCGTTCAACCCTTATGGGTTTCCATTAAGCTCTTTTGAGCTTCAGTTTAA
50942718 CCCTTATGGGTTTCCGTTC
66 CCCTTATGGGTTTCCGTTC
* * * * * * *
50942737 AACTCTTTTGAGCTTCAC-TTTAGCCCTTATGGGTTTCCATTCAGCTCTTTTAAGCTTCAATTTA
1 AACTCCTATGAGCTTC-CGTTCAACCCTTATGGGTTTCCATTAAGCTCTTTTGAGCTTCAGTTTA
*
50942801 ACCCTTATGGGTTTTCGTTC
65 ACCCTTATGGGTTTCCGTTC
* * * * * * *
50942821 ATCTCCTATGAGCTTCCGTTCAACCCTTACGGGTTTCTATTTAGCACTTATGTGCTTCAGTTTA
1 AACTCCTATGAGCTTCCGTTCAACCCTTATGGGTTTCCATTAAGCTCTTTTGAGCTTCAGTTTA
50942885 GCCTTCAGGC
Statistics
Matches: 122, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
83 1 0.01
84 120 0.98
85 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (84 bp):
AACTCCTATGAGCTTCCGTTCAACCCTTATGGGTTTCCATTAAGCTCTTTTGAGCTTCAGTTTAA
CCCTTATGGGTTTCCGTTC
Found at i:50945061 original size:22 final size:22
Alignment explanation
Indices: 50945026--50945095 Score: 72
Period size: 22 Copynumber: 3.2 Consensus size: 22
50945016 TATGCACAAG
*
50945026 TAAACGGAGAGCACCAAGGTGC
1 TAAACAGAGAGCACCAAGGTGC
*
50945048 TATAC-GAAGAGCA-CAAGCGTGC
1 TAAACAG-AGAGCACCAAG-GTGC
* *
50945070 TAAACAGAGAGCACTAATGTGC
1 TAAACAGAGAGCACCAAGGTGC
50945092 TAAA
1 TAAA
50945096 AAATAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
21 5 0.12
22 32 0.80
23 3 0.08
ACGTcount: A:0.40, C:0.20, G:0.26, T:0.14
Consensus pattern (22 bp):
TAAACAGAGAGCACCAAGGTGC
Found at i:50946678 original size:25 final size:25
Alignment explanation
Indices: 50946633--50946715 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
50946623 CAGCTCTCTT
**
50946633 GAGCTTCCTGATACTTGGCTCGCAA
1 GAGCTTCCTGATACTCAGCTCGCAA
* *
50946658 GAGCTTCCTGATA-TACAGCTCGTAT
1 GAGCTTCCTGATACT-CAGCTCGCAA
* * * * *
50946683 GAGCTTCCCGTTACTTAGCTCACAT
1 GAGCTTCCTGATACTCAGCTCGCAA
50946708 GAGCTTCC
1 GAGCTTCC
50946716 CATTATATGG
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 1 0.02
25 45 0.96
26 1 0.02
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.30
Consensus pattern (25 bp):
GAGCTTCCTGATACTCAGCTCGCAA
Found at i:50946728 original size:25 final size:25
Alignment explanation
Indices: 50946674--50946741 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
50946664 CCTGATATAC
* *
50946674 AGCTCGTATGAGCTTCCCGTTACTT
1 AGCTCGAATGAGCTTCCCATTACTT
50946699 AGCTC-ACATGAGCTTCCCATTA-TAT
1 AGCTCGA-ATGAGCTTCCCATTACT-T
* *
50946724 GGCTCGAAAGAGCTTCCC
1 AGCTCGAATGAGCTTCCC
50946742 GTTTACATGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
24 1 0.03
25 34 0.94
26 1 0.03
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (25 bp):
AGCTCGAATGAGCTTCCCATTACTT
Found at i:50951178 original size:57 final size:57
Alignment explanation
Indices: 50951067--50951208 Score: 171
Period size: 57 Copynumber: 2.4 Consensus size: 57
50951057 ATTGACGGTA
*
50951067 AAAAT-GATCTAGCCCGGACGAGTGATCTTATCCTGATATAGCCCTCCCGAAGAATATGTGTG
1 AAAATAGATCTAGCCCGGACGGGTGATC---T--TGATATAGCCCTCCCGAAGAATATGTG-G
* *
50951129 AAAA-AGATCTAGCCCGGATGGGTGATCTTGATATAGCCCTCCTGAAGAATATGTGG
1 AAAATAGATCTAGCCCGGACGGGTGATCTTGATATAGCCCTCCCGAAGAATATGTGG
* *
50951185 AAAATGGATTTAGCCCGGACGGGT
1 AAAATAGATCTAGCCCGGACGGGT
50951209 AATCCGAATT
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
56 5 0.07
57 42 0.58
59 1 0.01
62 24 0.33
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (57 bp):
AAAATAGATCTAGCCCGGACGGGTGATCTTGATATAGCCCTCCCGAAGAATATGTGG
Found at i:50951445 original size:67 final size:67
Alignment explanation
Indices: 50951337--50951466 Score: 251
Period size: 67 Copynumber: 1.9 Consensus size: 67
50951327 TTATATTACT
50951337 GGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGGAAGTGTGCTCTCTTG
1 GGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGGAAGTGTGCTCTCTTG
50951402 CA
66 CA
*
50951404 GGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGGGAGTGTGCTCTCT
1 GGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGGAAGTGTGCTCTCT
50951467 GAATTGAAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.20, C:0.19, G:0.34, T:0.27
Consensus pattern (67 bp):
GGGGATTTAGCCTGGACTGGTAATCCCGCTGTAAGAAATGAGGTTCGCGGAAGTGTGCTCTCTTG
CA
Found at i:50957900 original size:56 final size:50
Alignment explanation
Indices: 50957809--50958100 Score: 210
Period size: 50 Copynumber: 5.7 Consensus size: 50
50957799 GGGAATGAGA
* *
50957809 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATGAGATTATTAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-AT-AG---ATGAGAGG
* * *
50957865 TCTCATGTAAGACCATGTCTGGCACATGGCGTTGGCACGTAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACATAGATGAGAGG
* ** *
50957915 TCCCATGTAAGACCATGTCTGGGACATGGCGCTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACATAGATGAGAGG
** * * * * ** * **
50957965 TCCCCCGTAAGACCATGTCTAGGACATGGCATGGGTACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACATAGATGAGAGG
* * * * * * * * **
50958015 TCTCATGTAAGACCATATCTAGGATATGGCATTGGCA-GTACA-GAAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACATAGATG-AGAGG
* * *
50958064 TCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
50958101 TGTATTATCA
Statistics
Matches: 193, Mismatches: 42, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
48 1 0.01
49 34 0.18
50 120 0.62
53 2 0.01
54 1 0.01
55 1 0.01
56 34 0.18
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACATAGATGAGAGG
Found at i:50957914 original size:50 final size:50
Alignment explanation
Indices: 50957809--50958051 Score: 236
Period size: 50 Copynumber: 4.7 Consensus size: 50
50957799 GGGAATGAGA
* *
50957809 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCAATGAGATTATTAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
* * *
50957865 TCTCATGTAAGACCATGTCTGGCACATGGCGTTGGCA-CGTAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
** *
50957915 TCCCATGTAAGACCATGTCTGGGACATGGCGCTGGCACCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * * **
50957965 TCCCCCGTAAGACCATGTCTAGGACATGGCATGGGTACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * *
50958015 TCTCATGTAAGACCATATCTAGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
50958052 GTACAGAAAA
Statistics
Matches: 158, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
50 119 0.75
51 2 0.01
52 1 0.01
53 2 0.01
56 34 0.22
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:50958316 original size:4 final size:4
Alignment explanation
Indices: 50958300--50958338 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
50958290 ATGAGTTATT
* * *
50958300 TAAG TAAG CAAG TAAG TAAA TAAG TAAG TGAG TAAG TAA
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAA
50958339 AGAAGCGAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (4 bp):
TAAG
Found at i:50961440 original size:17 final size:17
Alignment explanation
Indices: 50961418--50961455 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
50961408 CATGGCCTAG
*
50961418 CACACGATTGTATGGCT
1 CACACGACTGTATGGCT
*
50961435 CACACGGCTGTATGGCT
1 CACACGACTGTATGGCT
50961452 CACA
1 CACA
50961456 TGGCCTGGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (17 bp):
CACACGACTGTATGGCT
Found at i:50962017 original size:10 final size:11
Alignment explanation
Indices: 50962003--50962032 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
50961993 AGAACAATAA
50962003 AAAGAAGAAGG
1 AAAGAAGAAGG
50962014 -AAGAAGAAGG
1 AAAGAAGAAGG
50962024 AAAGAAGAA
1 AAAGAAGAA
50962033 AAAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (11 bp):
AAAGAAGAAGG
Found at i:50972606 original size:3 final size:3
Alignment explanation
Indices: 50972600--50972682 Score: 94
Period size: 3 Copynumber: 27.7 Consensus size: 3
50972590 CTTTATTATT
* *
50972600 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ACC ACC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
* * * * * *
50972648 ACC ACC ACC ACC ACC ACC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
50972683 TGGCTCATTT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.34, C:0.42, G:0.00, T:0.24
Consensus pattern (3 bp):
ATC
Found at i:50975841 original size:13 final size:13
Alignment explanation
Indices: 50975823--50975852 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
50975813 TGCACATATT
50975823 ACATATAAATTCA
1 ACATATAAATTCA
50975836 ACATATAAATTCA
1 ACATATAAATTCA
50975849 ACAT
1 ACAT
50975853 TGATAAACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (13 bp):
ACATATAAATTCA
Found at i:50976399 original size:24 final size:24
Alignment explanation
Indices: 50976359--50976500 Score: 83
Period size: 24 Copynumber: 5.8 Consensus size: 24
50976349 GCCTTCTCTT
* *
50976359 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCAT-TAACGGGAAGCTCATGA
* **
50976384 GAGCCATTAACGGGAAGCTTATCC
1 GAGCCATTAACGGGAAGCTCATGA
* * *
50976408 GGGCTACA-TAACGAGAAGCTCATAA
1 GAGC--CATTAACGGGAAGCTCATGA
* * *
50976433 GAGCCA-TAATTGGGAAGCTCGTGC
1 GAGCCATTAA-CGGGAAGCTCATGA
* * *
50976457 GAGCCAATAACGGGTAGCTC-CGAA
1 GAGCCATTAACGGGAAGCTCATG-A
*
50976481 GAGCCATTGACGGGAAGCTC
1 GAGCCATTAACGGGAAGCTC
50976501 CAGATAACCA
Statistics
Matches: 90, Mismatches: 22, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
23 6 0.07
24 56 0.62
25 26 0.29
26 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.28, T:0.18
Consensus pattern (24 bp):
GAGCCATTAACGGGAAGCTCATGA
Found at i:50976556 original size:23 final size:23
Alignment explanation
Indices: 50976491--50976559 Score: 68
Period size: 23 Copynumber: 2.9 Consensus size: 23
50976481 GAGCCATTGA
* *
50976491 CGGGAAGCTCCAGATAACCACATAT
1 CGGGAAGCTTCAGA-AAGC-CATAT
* *
50976516 CGGGAAG-TTAAAGCAAGCCATAT
1 CGGGAAGCTT-CAGAAAGCCATAT
50976539 CGGGAAGCTTCAGAAAGCCAT
1 CGGGAAGCTTCAGAAAGCCAT
50976560 TAATCAGAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
23 21 0.58
24 6 0.17
25 9 0.25
ACGTcount: A:0.36, C:0.23, G:0.25, T:0.16
Consensus pattern (23 bp):
CGGGAAGCTTCAGAAAGCCATAT
Found at i:50980918 original size:8 final size:7
Alignment explanation
Indices: 50980889--50980916 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
50980879 GTATGCCTAC
50980889 ATTTTTT
1 ATTTTTT
50980896 ATTTTTT
1 ATTTTTT
50980903 ATTTTTT
1 ATTTTTT
50980910 ATTTTTT
1 ATTTTTT
50980917 TAAAGAATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
ATTTTTT
Found at i:50983555 original size:17 final size:16
Alignment explanation
Indices: 50983533--50983635 Score: 53
Period size: 17 Copynumber: 6.6 Consensus size: 16
50983523 AGTGGTTATC
50983533 TTAATATTAAATTTAAT
1 TTAATATT-AATTTAAT
*
50983550 TTAATA-T-ATTTTA-
1 TTAATATTAATTTAAT
50983563 TTAAT-TTAA--TAGAT
1 TTAATATTAATTTA-AT
50983577 TTAATATTAAATTTAAT
1 TTAATATT-AATTTAAT
* * *
50983594 CTAATATTTATCTTGA-
1 TTAATATTAAT-TTAAT
50983610 -TAAGTATT-ATATTAAT
1 TTAA-TATTAAT-TTAAT
50983626 TTAATATTAA
1 TTAATATTAA
50983636 AGTGATTAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 26
0.67 0.07 0.26
Matches are distributed among these distances:
12 1 0.02
13 7 0.11
14 11 0.17
15 10 0.15
16 13 0.20
17 22 0.33
18 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (16 bp):
TTAATATTAATTTAAT
Found at i:50983568 original size:18 final size:19
Alignment explanation
Indices: 50983545--50983593 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 19
50983535 AATATTAAAT
*
50983545 TTAATTTAATATATTT-TA
1 TTAATTTAATAGATTTATA
50983563 TTAATTTAATAGATTTAATA
1 TTAATTTAATAGATTT-ATA
50983583 TTAAATTTAAT
1 TT-AATTTAAT
50983594 CTAATATTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 15 0.56
20 4 0.15
21 8 0.30
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTAATTTAATAGATTTATA
Found at i:50985430 original size:5 final size:5
Alignment explanation
Indices: 50985416--50985531 Score: 216
Period size: 5 Copynumber: 23.4 Consensus size: 5
50985406 AAGTATTAAG
*
50985416 TATA- TATAT TATAT TACAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
50985465 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
50985515 TATAT TATAT TATAT TA
1 TATAT TATAT TATAT TA
50985532 AAACAAAATA
Statistics
Matches: 109, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
4 4 0.04
5 105 0.96
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:50986375 original size:18 final size:19
Alignment explanation
Indices: 50986339--50986381 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
50986329 GAATCGGTAT
50986339 ATATATTGAATATATATTGA
1 ATAT-TTGAATATATATTGA
* *
50986359 TTATTTGAATTTA-ATTGA
1 ATATTTGAATATATATTGA
50986377 ATATT
1 ATATT
50986382 GGTTGTGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 9 0.45
19 8 0.40
20 3 0.15
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (19 bp):
ATATTTGAATATATATTGA
Found at i:50986539 original size:41 final size:40
Alignment explanation
Indices: 50986489--50986601 Score: 133
Period size: 41 Copynumber: 2.9 Consensus size: 40
50986479 CTTCGACTTC
*
50986489 AATTTGATGAGACACTAGGTGTCAATTTACTACTTCGGTTT
1 AATTCGATGAGACACTAGGTGTCAATTTA-TACTTCGGTTT
* *
50986530 AATTCGATGAGGCACTAGGTGCCAA-TT-TACTTCGGTTT
1 AATTCGATGAGACACTAGGTGTCAATTTATACTTCGGTTT
** *
50986568 -AGCCGATGAGACACTGGGTGTCAATTTATTACTT
1 AATTCGATGAGACACTAGGTGTCAATTTA-TACTT
50986602 TGAATTATCC
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
37 19 0.31
38 13 0.21
40 7 0.11
41 22 0.36
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (40 bp):
AATTCGATGAGACACTAGGTGTCAATTTATACTTCGGTTT
Found at i:50986593 original size:37 final size:38
Alignment explanation
Indices: 50986494--50986595 Score: 125
Period size: 37 Copynumber: 2.6 Consensus size: 38
50986484 ACTTCAATTT
**
50986494 GATGAGACACTAGGTGTCAATTTACTACTTCGGTTTAATTC
1 GATGAGACACTAGGTGTCAA-TT--TACTTCGGTTTAAGCC
* *
50986535 GATGAGGCACTAGGTGCCAATTTACTTCGGTTT-AGCC
1 GATGAGACACTAGGTGTCAATTTACTTCGGTTTAAGCC
*
50986572 GATGAGACACTGGGTGTCAATTTA
1 GATGAGACACTAGGTGTCAATTTA
50986596 TTACTTTGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
37 23 0.43
38 11 0.20
40 2 0.04
41 18 0.33
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (38 bp):
GATGAGACACTAGGTGTCAATTTACTTCGGTTTAAGCC
Found at i:50988772 original size:27 final size:29
Alignment explanation
Indices: 50988719--50988772 Score: 67
Period size: 27 Copynumber: 1.9 Consensus size: 29
50988709 AAATTAAAAA
* *
50988719 TTTTATAAAAATTCAAAAAATTGAAAACT
1 TTTTATAAAAAATCAAAAAATTCAAAACT
*
50988748 TTTTA-AAAAAATC-AAAATTTCAAAA
1 TTTTATAAAAAATCAAAAAATTCAAAA
50988773 AATAACATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
27 10 0.45
28 7 0.32
29 5 0.23
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (29 bp):
TTTTATAAAAAATCAAAAAATTCAAAACT
Found at i:50997544 original size:34 final size:38
Alignment explanation
Indices: 50997492--50997567 Score: 88
Period size: 36 Copynumber: 2.1 Consensus size: 38
50997482 TGAAACATAG
*
50997492 AAAATATATAAAAGTATGT-GTATATATATAT-TTATA
1 AAAATATATAAAAATATGTAGTATATATATATATTATA
* *
50997528 AAAAT-TA-AAAAATATGTACTTATATGTATATATTATA
1 AAAATATATAAAAATATGTA-GTATATATATATATTATA
50997565 AAA
1 AAA
50997568 CGTATGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 9 0.26
35 2 0.06
36 15 0.44
37 8 0.24
ACGTcount: A:0.53, C:0.01, G:0.07, T:0.39
Consensus pattern (38 bp):
AAAATATATAAAAATATGTAGTATATATATATATTATA
Found at i:50998132 original size:23 final size:24
Alignment explanation
Indices: 50998100--50998167 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 24
50998090 AAATTAAATC
*
50998100 TCTAATATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
*
50998123 TCTAAGATTACATATATCATA---
1 TCTAAGATTACATAAATCATATCT
* *
50998144 TCTAAGATTGCATATATCATATCT
1 TCTAAGATTACATAAATCATATCT
50998168 AAGATTGCAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
21 20 0.53
23 11 0.29
24 7 0.18
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Found at i:50998149 original size:21 final size:21
Alignment explanation
Indices: 50998123--50998198 Score: 129
Period size: 21 Copynumber: 3.7 Consensus size: 21
50998113 AATCATATCT
*
50998123 TCTAAGATTACATATATCATA
1 TCTAAGATTGCATATATCATA
50998144 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCATATATCATA
50998165 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
50998184 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
50998199 CCTTGTAGAT
Statistics
Matches: 52, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
19 19 0.37
21 33 0.63
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.38
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:50998158 original size:19 final size:19
Alignment explanation
Indices: 50998136--50998199 Score: 110
Period size: 19 Copynumber: 3.3 Consensus size: 19
50998126 AAGATTACAT
50998136 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
50998155 ATATATCATATCTAAGATTGC
1 --ATATCATATCTAAGATTGC
50998176 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTGC
50998195 ATATC
1 ATATC
50998200 CTTGTAGATT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
19 24 0.56
21 19 0.44
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (19 bp):
ATATCATATCTAAGATTGC
Found at i:50998871 original size:44 final size:44
Alignment explanation
Indices: 50998693--50998871 Score: 107
Period size: 44 Copynumber: 4.1 Consensus size: 44
50998683 AAAGAGATAA
* *
50998693 GATTCGCTGCCTTTGATCTGT-TCCACTACTGCTTAGGGATACAG
1 GATTTGCTGCCTTTGATCT-TCTCCACTACTGCTTAGGGAGACAG
* * *** * * * *
50998737 GATCTACAATCTTTGACCTACTCCACTGCTGCTCAGGGAGA-AGG
1 GATTTGCTGCCTTTGATCTTCTCCACTACTGCTTAGGGAGACA-G
* * ** * * *
50998781 GA-TTGGTGGCTTAAATCTGCTTCC-CTACTACCTT-GGGAAGATAG
1 GATTTGCTGCCTTTGATCTTC-TCCACTACT-GCTTAGGG-AGACAG
*
50998825 GATTTGCTGCCTTCGATCTTCTCCACTACTGCTTAGGGAGACAG
1 GATTTGCTGCCTTTGATCTTCTCCACTACTGCTTAGGGAGACAG
50998869 GAT
1 GAT
50998872 CTACAATCTT
Statistics
Matches: 95, Mismatches: 31, Indels: 18
0.66 0.22 0.12
Matches are distributed among these distances:
43 16 0.17
44 57 0.60
45 22 0.23
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (44 bp):
GATTTGCTGCCTTTGATCTTCTCCACTACTGCTTAGGGAGACAG
Found at i:50998900 original size:132 final size:132
Alignment explanation
Indices: 50998687--50999022 Score: 503
Period size: 132 Copynumber: 2.5 Consensus size: 132
50998677 AACGCCAAAG
* * * *
50998687 AGATAAGATTCGCTGCCTTTGATCTGT-TCCACTACTGCTTAGGGATACAGGATCTACAATCTTT
1 AGATAAGATTTGCTGCCTTCGATCT-TCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTC
* * *
50998751 GACCTACTCCACTGCTGCTCAGGGAGAAGGGATTGGTGGCTTAAATCTGCTTCCCTACTACCTTG
65 AACCTACTCCACCGCTGCTCAGGGAGAAGGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTG
50998816 GGA
130 GGA
*
50998819 AGATAGGATTTGCTGCCTTCGATCTTCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCA
1 AGATAAGATTTGCTGCCTTCGATCTTCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCA
**
50998884 ACCTACTCCACCGCTGCTCAGGGAGATTGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
66 ACCTACTCCACCGCTGCTCAGGGAGAAGGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
50998949 GA
131 GA
* *** * *
50998951 AGATAAGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCA
1 AGATAAGATTTGCTGCCTTCGATCTTCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCA
*
50999016 ATCTACT
66 ACCTACT
50999023 TCGCTGCCAA
Statistics
Matches: 185, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 1 0.01
132 184 0.99
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.30
Consensus pattern (132 bp):
AGATAAGATTTGCTGCCTTCGATCTTCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCA
ACCTACTCCACCGCTGCTCAGGGAGAAGGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGG
GA
Found at i:50999047 original size:45 final size:45
Alignment explanation
Indices: 50998995--50999904 Score: 1212
Period size: 45 Copynumber: 20.4 Consensus size: 45
50998985 CTGCTTAGGG
* * * *
50998995 AGACAAGATCTACAATCTTCAATCTACTTCGCTGCCAATACAAGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* *
50999040 AGACAAGATCTGCTATCTTCAATCTACTTCGCTGCTAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
*
50999085 AGACAAGATCTGCTATCTTGGATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
*
50999130 AGACAAGATCTG----C-T--A--T-CTTCGCTGCCAGTACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
*
50999165 AGACAAGATTTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* * *
50999210 AGACAAAATCTGCTATCTTTGATCTACTTCGCTGCCAGTACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* **
50999255 AGACAAGATCTGCTATCTTCAATCTACTTTACTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* ** ** * *
50999300 AGATAAGATCTATTATCTTCGATCTACTTCGCT-ATAATATAAGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
** *
50999344 AGACAAGATCTGCTATCTTCGATCTACTTTACTGCCAGTACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
** * *
50999389 AGACAAGATCTGCTATCTTTAATCTACTTCGCTGCTAATACAGAA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* *
50999434 AGACAAGATCTGCTATCTTCAATCTAGTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* *
50999479 AGACAAGATCTGCTATCTTCGATCTACTTCACTACCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
*
50999524 AGACAAGATCTGCTATCTTCGATCTACTTCCCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* * *
50999569 AGACAAGATCTGCTATCTTCGATCTACTTTGCTGCCAGTATAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
**
50999614 AGACAAGATCTGCTATCTTTAATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* * *
50999659 AGATAAGATCTGCCACCTTCGATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* * * *
50999704 AGACAAGATCTGCTAACTTCAATCTACTTCGTTGTCAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* * *
50999749 AGACAAGATCTGCTATCTTCGATCTACTTTGCTGTCAATACAGAA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* * * *
50999794 AGACAAGATATGTTATCTTCGATCTACTTCGCTACCAATACAAGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
* * *
50999839 AGACAAGATCTGCTAACTTTGATCTACATCGCTGCCAAATACAGGA
1 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCC-AATACAGGA
* *
50999885 AGACAAAATCTGTTATCTTC
1 AGACAAGATCTGCTATCTTC
50999905 AACCTACTCC
Statistics
Matches: 753, Mismatches: 100, Indels: 23
0.86 0.11 0.03
Matches are distributed among these distances:
35 29 0.04
36 1 0.00
38 1 0.00
39 1 0.00
40 2 0.00
41 1 0.00
42 1 0.00
44 36 0.05
45 657 0.87
46 24 0.03
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (45 bp):
AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
Found at i:50999150 original size:35 final size:35
Alignment explanation
Indices: 50999111--50999185 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
50999101 CTTGGATCTA
50999111 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT
* *
50999146 CTTCGCTGCCAGTACAGGAAGACAAGATTTGCTAT
1 CTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT
50999181 CTTCG
1 CTTCG
50999186 ATCTACTTCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (35 bp):
CTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT
Found at i:51001331 original size:61 final size:60
Alignment explanation
Indices: 51001216--51001331 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 60
51001206 CCTTTGTTAA
* ** * * *
51001216 TTTTTTAGACTCAAAGCGCCCTTTGCGGGTTTTCACCTCGGTCTTCTTTTCTTTTTTCTT
1 TTTTTTAGACTCAAAGCACCCTTTGCGAATTTTCACCTCGATCTTCTCTCCTTTTTTCTT
*
51001276 TTTTTTAGGACTCAAAGCACCCTTTGCGAATTTTCACCTTGATCATT-TCTCCTTTT
1 TTTTTTA-GACTCAAAGCACCCTTTGCGAATTTTCACCTCGATC-TTCTCTCCTTTT
51001332 AGGTACTTCT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
60 7 0.15
61 38 0.81
62 2 0.04
ACGTcount: A:0.15, C:0.25, G:0.13, T:0.47
Consensus pattern (60 bp):
TTTTTTAGACTCAAAGCACCCTTTGCGAATTTTCACCTCGATCTTCTCTCCTTTTTTCTT
Found at i:51004937 original size:16 final size:16
Alignment explanation
Indices: 51004916--51004950 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
51004906 TTCTATGATG
*
51004916 AAATGTCATGCAGTCA
1 AAATGTCATGCAGCCA
51004932 AAATGTCATGCAGCCA
1 AAATGTCATGCAGCCA
51004948 AAA
1 AAA
51004951 CAAAACACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (16 bp):
AAATGTCATGCAGCCA
Found at i:51006626 original size:23 final size:22
Alignment explanation
Indices: 51006586--51006629 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
51006576 AAACTATAAA
*
51006586 ATATAAAAATATATATATGTAC
1 ATATAAAAAAATATATATGTAC
51006608 ATATAAGAAAAATATATATGTA
1 ATATAA-AAAAATATATATGTA
51006630 TGTGAATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAC
Found at i:51007362 original size:23 final size:22
Alignment explanation
Indices: 51007319--51007376 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
51007309 AACGGGTATC
* *
51007319 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
51007340 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
51007363 TGCATATCATATCT
1 TACAAATCATATCT
51007377 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:51007392 original size:21 final size:21
Alignment explanation
Indices: 51007355--51007409 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
51007345 AATCATATCT
51007355 TCTAAGATTGC--ATATCATA
1 TCTAAGATTGCATATATCATA
*
51007374 TCTAAGATTGTATATATCATA
1 TCTAAGATTGCATATATCATA
51007395 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
51007410 CCTTGAAGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 10 0.31
21 22 0.69
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (21 bp):
TCTAAGATTGCATATATCATA
Found at i:51007786 original size:35 final size:35
Alignment explanation
Indices: 51007747--51007817 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
51007737 CTAGCAAAAA
*
51007747 ACAATGATAATTAAAATATAAAACATCACATAATT
1 ACAATAATAATTAAAATATAAAACATCACATAATT
51007782 ACAATAATAATTAAAATATAAAACATCACATAATT
1 ACAATAATAATTAAAATATAAAACATCACATAATT
51007817 A
1 A
51007818 GTAGAGCCTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.59, C:0.11, G:0.01, T:0.28
Consensus pattern (35 bp):
ACAATAATAATTAAAATATAAAACATCACATAATT
Found at i:51012687 original size:16 final size:16
Alignment explanation
Indices: 51012666--51012699 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
51012656 AAAACATTTT
51012666 TTATAAATGTTATATA
1 TTATAAATGTTATATA
*
51012682 TTATAAATTTTATATA
1 TTATAAATGTTATATA
51012698 TT
1 TT
51012700 TTTGGCTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (16 bp):
TTATAAATGTTATATA
Found at i:51013543 original size:17 final size:16
Alignment explanation
Indices: 51013523--51013623 Score: 69
Period size: 17 Copynumber: 5.9 Consensus size: 16
51013513 TAACAATGAA
51013523 TTTTAGAATTTTTAAAT
1 TTTTA-AATTTTTAAAT
*
51013540 TTTTAATTTTTTTAAAT
1 TTTTAA-ATTTTTAAAT
51013557 TTTTAAATTTTTTAAAGAT
1 TTTTAAA-TTTTT-AA-AT
**
51013576 TTTTTTATTTTTAGAAT
1 TTTTAAATTTTTA-AAT
* *
51013593 TTTAAAGATTTTT-TAT
1 TTTTAA-ATTTTTAAAT
**
51013609 TTTTCTATTTTTAAA
1 TTTTAAATTTTTAAA
51013624 ACTATAATTT
Statistics
Matches: 65, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
15 6 0.09
16 7 0.11
17 31 0.48
18 14 0.22
19 7 0.11
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (16 bp):
TTTTAAATTTTTAAAT
Found at i:51013547 original size:7 final size:8
Alignment explanation
Indices: 51013523--51013623 Score: 69
Period size: 8 Copynumber: 11.9 Consensus size: 8
51013513 TAACAATGAA
51013523 TTTTAGAAT
1 TTTTA-AAT
51013532 TTTTAAAT
1 TTTTAAAT
*
51013540 TTTTAATTT
1 TTTTAA-AT
51013549 TTTTAAAT
1 TTTTAAAT
51013557 TTTTAAATT
1 TTTTAAA-T
51013566 TTTTAAAGAT
1 TTTT-AA-AT
**
51013576 TTTTTTAT
1 TTTTAAAT
51013584 TTTTAGAAT
1 TTTTA-AAT
*
51013593 TTTAAAGAT
1 TTTTAA-AT
*
51013602 TTTT-TAT
1 TTTTAAAT
**
51013609 TTTTCTAT
1 TTTTAAAT
51013617 TTTTAAA
1 TTTTAAA
51013624 ACTATAATTT
Statistics
Matches: 74, Mismatches: 11, Indels: 15
0.74 0.11 0.15
Matches are distributed among these distances:
7 6 0.08
8 32 0.43
9 28 0.38
10 7 0.09
11 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (8 bp):
TTTTAAAT
Found at i:51013620 original size:25 final size:26
Alignment explanation
Indices: 51013555--51013623 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 26
51013545 ATTTTTTTAA
*
51013555 ATTTTTAAATTTTTTAAAGATTTTTTT
1 ATTTTTAGA-TTTTTAAAGATTTTTTT
*
51013582 ATTTTTAGAATTTTAAAGA-TTTTTT
1 ATTTTTAGATTTTTAAAGATTTTTTT
**
51013607 ATTTTTCTATTTTTAAA
1 ATTTTTAGATTTTTAAA
51013624 ACTATAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 20 0.54
26 9 0.24
27 8 0.22
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (26 bp):
ATTTTTAGATTTTTAAAGATTTTTTT
Found at i:51015057 original size:12 final size:12
Alignment explanation
Indices: 51015040--51015064 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51015030 CCACTTTATA
51015040 AAAAAATCATTT
1 AAAAAATCATTT
51015052 AAAAAATCATTT
1 AAAAAATCATTT
51015064 A
1 A
51015065 TGATAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAAAATCATTT
Found at i:51015087 original size:22 final size:21
Alignment explanation
Indices: 51015061--51015113 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
51015051 TAAAAAATCA
*
51015061 TTTATGATAAAATACATAAGAT
1 TTTAT-ATAAAATACATAAAAT
51015083 TTTATA-AAAATACATAAAAT
1 TTTATATAAAATACATAAAAT
*
51015103 ATTATAATAAA
1 TTTAT-ATAAA
51015114 TGAATACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 17 0.63
21 2 0.07
22 8 0.30
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.36
Consensus pattern (21 bp):
TTTATATAAAATACATAAAAT
Found at i:51015094 original size:20 final size:20
Alignment explanation
Indices: 51015069--51015114 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
51015059 CATTTATGAT
* *
51015069 AAAATACATAAGATTTTATA
1 AAAATACATAAAATATTATA
51015089 AAAATACATAAAATATTATA
1 AAAATACATAAAATATTATA
51015109 ATAAAT
1 A-AAAT
51015115 GAATACCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAATACATAAAATATTATA
Found at i:51015700 original size:20 final size:20
Alignment explanation
Indices: 51015677--51015714 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51015667 TGGGTTTTCT
* *
51015677 TTTTTTTTATAAGATTATTA
1 TTTTATTTATAAAATTATTA
51015697 TTTTATTTATAAAATTAT
1 TTTTATTTATAAAATTAT
51015715 CATTATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTATTTATAAAATTATTA
Found at i:51015796 original size:23 final size:24
Alignment explanation
Indices: 51015765--51015818 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
51015755 AAAGATATCC
51015765 ATTTATTTATAAATATTTATAATA
1 ATTTATTTATAAATATTTATAATA
* * *
51015789 ATTT-TTTATATATTTTTATAAAA
1 ATTTATTTATAAATATTTATAATA
51015812 ATATTAT
1 AT-TTAT
51015819 GTATTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 18 0.72
24 6 0.24
25 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTTATTTATAAATATTTATAATA
Found at i:51018826 original size:5 final size:5
Alignment explanation
Indices: 51018819--51018856 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
51018809 TTAGTACTCT
*
51018819 CATCT CATCA CATCA CATCA CATCA CATCA CATCA CAT
1 CATCA CATCA CATCA CATCA CATCA CATCA CATCA CAT
51018857 GCATGTGATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (5 bp):
CATCA
Found at i:51019898 original size:6 final size:6
Alignment explanation
Indices: 51019889--51019917 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
51019879 ATATTTGCTC
51019889 AAAATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAAT
51019918 TTTTATCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:51026215 original size:16 final size:13
Alignment explanation
Indices: 51026179--51026210 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
51026169 AAGAAATTTG
51026179 AGAACAAATAATAA
1 AGAA-AAATAATAA
51026193 AGAAAAATAATAA
1 AGAAAAATAATAA
51026206 AGAAA
1 AGAAA
51026211 CAAAAGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.75, C:0.03, G:0.09, T:0.12
Consensus pattern (13 bp):
AGAAAAATAATAA
Found at i:51028125 original size:9 final size:9
Alignment explanation
Indices: 51028111--51028167 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
51028101 TTCAACCCAC
51028111 AATTTTTTT
1 AATTTTTTT
51028120 AATTTTTTT
1 AATTTTTTT
* *
51028129 TATCTTTTT
1 AATTTTTTT
*
51028138 ATCTTTTTCTT
1 A-ATTTTT-TT
*
51028149 GATTTTTGTT
1 AATTTTT-TT
51028159 AATTTTTTT
1 AATTTTTTT
51028168 GTGGGAAATA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
9 18 0.49
10 17 0.46
11 2 0.05
ACGTcount: A:0.16, C:0.05, G:0.04, T:0.75
Consensus pattern (9 bp):
AATTTTTTT
Found at i:51030246 original size:26 final size:26
Alignment explanation
Indices: 51030217--51030268 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
51030207 TTTAAGAAGA
51030217 GCTTTTGAAAAGTGATTTTCAGAAAT
1 GCTTTTGAAAAGTGATTTTCAGAAAT
* * *
51030243 GCTTTTGAGAAGTGCTTTTGAGAAAT
1 GCTTTTGAAAAGTGATTTTCAGAAAT
51030269 TTGGGTGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (26 bp):
GCTTTTGAAAAGTGATTTTCAGAAAT
Found at i:51030868 original size:12 final size:12
Alignment explanation
Indices: 51030851--51030880 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
51030841 GTCATTAACC
51030851 CTAGATTATATT
1 CTAGATTATATT
*
51030863 CTAGATTTTATT
1 CTAGATTATATT
51030875 CTAGAT
1 CTAGAT
51030881 CCAAATCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (12 bp):
CTAGATTATATT
Found at i:51038418 original size:21 final size:18
Alignment explanation
Indices: 51038393--51038438 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
51038383 ATATGATTTT
51038393 TTATTAAAATCTTAGTATTAA
1 TTATTAAAA--TTA-TATTAA
*
51038414 TTATTTAAATTATATTAA
1 TTATTAAAATTATATTAA
51038432 TTATTAA
1 TTATTAA
51038439 GTAATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 12 0.52
19 3 0.13
21 8 0.35
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
TTATTAAAATTATATTAA
Found at i:51038469 original size:14 final size:14
Alignment explanation
Indices: 51038450--51038501 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
51038440 TAATTAAAAC
51038450 AATAAAGTAAATAA
1 AATAAAGTAAATAA
51038464 AATAAAGTAAATAA
1 AATAAAGTAAATAA
* * *
51038478 AAGAAACTAAA-GA
1 AATAAAGTAAATAA
*
51038491 AATAAAATAAA
1 AATAAAGTAAA
51038502 GAAAGGAAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
13 10 0.30
14 23 0.70
ACGTcount: A:0.73, C:0.02, G:0.08, T:0.17
Consensus pattern (14 bp):
AATAAAGTAAATAA
Found at i:51038533 original size:9 final size:9
Alignment explanation
Indices: 51038463--51038533 Score: 56
Period size: 9 Copynumber: 7.9 Consensus size: 9
51038453 AAAGTAAATA
51038463 AAAT-AAAG
1 AAATAAAAG
51038471 TAAATAAAAG
1 -AAATAAAAG
51038481 AAACT-AAAG
1 AAA-TAAAAG
*
51038490 AAATAAAAT
1 AAATAAAAG
* *
51038499 AAAGAAAGG
1 AAATAAAAG
*
51038508 AAGTAAAAG
1 AAATAAAAG
*
51038517 AAGTAAAAG
1 AAATAAAAG
*
51038526 AAACAAAA
1 AAATAAAA
51038534 AGAACAGCAG
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
8 1 0.02
9 44 0.88
10 5 0.10
ACGTcount: A:0.72, C:0.03, G:0.14, T:0.11
Consensus pattern (9 bp):
AAATAAAAG
Found at i:51039467 original size:23 final size:23
Alignment explanation
Indices: 51039440--51039515 Score: 68
Period size: 23 Copynumber: 3.4 Consensus size: 23
51039430 AGCTTTACCG
51039440 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACTTTATGTGTCGTAT
* *
51039463 ATCAGACACTTTATTTG-CTGTAT
1 ATCAGGCACTTTATGTGTC-GTAT
* * **
51039486 TTCAGGCACCTCCTGTGTCG--T
1 ATCAGGCACTTTATGTGTCGTAT
51039507 ATCAGGCAC
1 ATCAGGCAC
51039516 CTCGTGTGTC
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
21 9 0.21
22 1 0.02
23 31 0.74
24 1 0.02
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.36
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCGTAT
Found at i:51039513 original size:21 final size:21
Alignment explanation
Indices: 51039487--51039536 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
51039477 TTGCTGTATT
51039487 TCAGGCACCTCCTGTGTCGTA
1 TCAGGCACCTCCTGTGTCGTA
* *
51039508 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCCTGTGTCGTA
*
51039529 TTAGGCAC
1 TCAGGCAC
51039537 AATGTGTCGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.14, C:0.30, G:0.26, T:0.30
Consensus pattern (21 bp):
TCAGGCACCTCCTGTGTCGTA
Found at i:51047527 original size:2 final size:2
Alignment explanation
Indices: 51047520--51047583 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
51047510 ATTTGGTTCT
51047520 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
51047562 AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG
51047584 GGAGGGAGGT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:51058422 original size:42 final size:42
Alignment explanation
Indices: 51058376--51058562 Score: 227
Period size: 41 Copynumber: 4.2 Consensus size: 42
51058366 GGCCCATTTT
51058376 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAA
51058418 TATTTTTAAAATATTTTAAAATTTTAAAAAATTAAAAAAGAGTATTTTAAAAA
1 TA--TTT----TA----AAAATTTTAAAAAATTAAAAAA-AGTATTTTAAAAA
51058471 TATTTT-AAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAA
* *
51058512 TATTTT-AAAATTTTAAAAAAATT-AAAAAAGTATGTAAAAAA
1 TATTTTAAAAATTTT-AAAAAATTAAAAAAAGTATTTTAAAAA
51058553 TATTTTAAAA
1 TATTTTAAAA
51058563 TTAAAAAATA
Statistics
Matches: 130, Mismatches: 2, Indels: 26
0.82 0.01 0.16
Matches are distributed among these distances:
41 49 0.38
42 35 0.27
44 3 0.02
47 1 0.01
48 2 0.02
51 3 0.02
52 22 0.17
53 15 0.12
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (42 bp):
TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:51058443 original size:52 final size:51
Alignment explanation
Indices: 51058376--51058562 Score: 200
Period size: 52 Copynumber: 3.8 Consensus size: 51
51058366 GGCCCATTTT
51058376 TATTTTAAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTTAAAA
1 TATTTT-AAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAATA-TTTTAAAA
51058429 TATTTTAAAATTTTAAAAAATTAAAAAAGAGTA-TTT-----TA----AAAA
1 TATTTTAAAATTTTAAAAAATTAAAAAA-AGTATTTTAAAAATATTTTAAAA
51058471 TATTTTAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAA
1 TATTTTAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAA
* ** *
51058522 T-TTTAAAAAAATTAAAAAAGTATGTAAAAAA-TATTTTAAAA
1 TATTTTAAAATTTTAAAAAA-T-T-AAAAAAAGTATTTTAAAA
51058563 TTAAAAAATA
Statistics
Matches: 116, Mismatches: 4, Indels: 29
0.78 0.03 0.19
Matches are distributed among these distances:
41 4 0.03
42 35 0.30
47 4 0.03
50 15 0.13
51 6 0.05
52 36 0.31
53 16 0.14
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (51 bp):
TATTTTAAAATTTTAAAAAATTAAAAAAAGTATTTTAAAAATATTTTAAAA
Found at i:51058489 original size:41 final size:41
Alignment explanation
Indices: 51058413--51058571 Score: 245
Period size: 41 Copynumber: 3.9 Consensus size: 41
51058403 AAAGTATTTT
*
51058413 AAAAA-TATTTTTAAAATATTTTAAAATTTTAAAAAATTAA
1 AAAAAGTATTTTAAAAATATTTTAAAATTTTAAAAAATTAA
51058453 AAAAGAGTATTTTAAAAATATTTTAAAATTTTAAAAAATTAA
1 AAAA-AGTATTTTAAAAATATTTTAAAATTTTAAAAAATTAA
51058495 AAAAAGTATTTTAAAAATATTTTAAAATTTTAAAAAAATT-A
1 AAAAAGTATTTTAAAAATATTTTAAAATTTT-AAAAAATTAA
* *
51058536 AAAAAGTATGTAAAAAATATTTTAAAA--TTAAAAAAT
1 AAAAAGTATTTTAAAAATATTTTAAAATTTTAAAAAAT
51058572 AAATATATTT
Statistics
Matches: 113, Mismatches: 3, Indels: 8
0.91 0.02 0.06
Matches are distributed among these distances:
38 7 0.06
39 2 0.02
40 4 0.04
41 54 0.48
42 46 0.41
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (41 bp):
AAAAAGTATTTTAAAAATATTTTAAAATTTTAAAAAATTAA
Found at i:51058598 original size:5 final size:5
Alignment explanation
Indices: 51058590--51058614 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
51058580 TTATTATATT
51058590 GGGCC GGGCC GGGCC GGGCC GGGCC
1 GGGCC GGGCC GGGCC GGGCC GGGCC
51058615 CAGGCCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.60, T:0.00
Consensus pattern (5 bp):
GGGCC
Found at i:51061423 original size:47 final size:50
Alignment explanation
Indices: 51061360--51061466 Score: 121
Period size: 51 Copynumber: 2.2 Consensus size: 50
51061350 AAAGATCTTG
* *
51061360 TTTATTTAATT-GTTT-TTCAGATTTGATG-TTTTAAATAAATATAAATA
1 TTTATTTAATTATTTTGTTCACATTTGATGTTTTTAAATAAATATAAATA
* * * *
51061407 TTTATTTATTTATTTTTGTTTACATTTGGTGTTTTTACATAAATATAAATA
1 TTTATTTAATTA-TTTTGTTCACATTTGATGTTTTTAAATAAATATAAATA
*
51061458 TTTGTTTAA
1 TTTATTTAA
51061467 AATCATCATT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
47 10 0.21
49 3 0.06
50 10 0.21
51 25 0.52
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.57
Consensus pattern (50 bp):
TTTATTTAATTATTTTGTTCACATTTGATGTTTTTAAATAAATATAAATA
Found at i:51062777 original size:14 final size:14
Alignment explanation
Indices: 51062760--51062874 Score: 101
Period size: 14 Copynumber: 8.1 Consensus size: 14
51062750 TGAGCCCATG
* *
51062760 TATGCGAAGCCCTG
1 TATGCGAACCCCTA
*
51062774 TATGCAAACCCCTA
1 TATGCGAACCCCTA
* * * *
51062788 TAAGCGAACACTTG
1 TATGCGAACCCCTA
*
51062802 TATGTGAACCCCTA
1 TATGCGAACCCCTA
51062816 TATGCGAACCCCTA
1 TATGCGAACCCCTA
51062830 TATGCGAACCCCCCATA
1 TATGCGAA--CCCC-TA
51062847 TATGCGAA-CCC-A
1 TATGCGAACCCCTA
51062859 TATGCAGAA-CCCTA
1 TATGC-GAACCCCTA
51062873 TA
1 TA
51062875 GGATTTAGTA
Statistics
Matches: 82, Mismatches: 14, Indels: 10
0.77 0.13 0.09
Matches are distributed among these distances:
12 6 0.07
13 6 0.07
14 56 0.68
16 4 0.05
17 10 0.12
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.22
Consensus pattern (14 bp):
TATGCGAACCCCTA
Found at i:51062805 original size:42 final size:42
Alignment explanation
Indices: 51062758--51062838 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
51062748 GGTGAGCCCA
* *
51062758 TGTATGCGAAGCCCTGTATGCAAACCCCTATAAGCGAACACT
1 TGTATGCGAACCCCTATATGCAAACCCCTATAAGCGAACACT
* * *
51062800 TGTATGTGAACCCCTATATGCGAACCCCTATATGCGAAC
1 TGTATGCGAACCCCTATATGCAAACCCCTATAAGCGAAC
51062839 CCCCCATATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (42 bp):
TGTATGCGAACCCCTATATGCAAACCCCTATAAGCGAACACT
Found at i:51062861 original size:29 final size:31
Alignment explanation
Indices: 51062810--51062870 Score: 92
Period size: 30 Copynumber: 2.0 Consensus size: 31
51062800 TGTATGTGAA
51062810 CCCCTATATGCGAACCCCTATATGC-GAACC
1 CCCCTATATGCGAACCCCTATATGCAGAACC
51062840 CCCCATATATGCGAA-CCC-ATATGCAGAACC
1 CCCC-TATATGCGAACCCCTATATGCAGAACC
51062870 C
1 C
51062871 TATAGGATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 6 0.21
30 13 0.45
31 10 0.34
ACGTcount: A:0.30, C:0.39, G:0.13, T:0.18
Consensus pattern (31 bp):
CCCCTATATGCGAACCCCTATATGCAGAACC
Found at i:51062995 original size:45 final size:45
Alignment explanation
Indices: 51062946--51063050 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
51062936 TATCTATTGA
*
51062946 AATATGCAAACCCTATATGTTATTTATGCAAACCCTACATGTGGT
1 AATATGCAAACCCTATATGTCATTTATGCAAACCCTACATGTGGT
*** * * * * *
51062991 AATATATGAGCCTTATATGTCGTTTATGCGAACCCTATATGTGGT
1 AATATGCAAACCCTATATGTCATTTATGCAAACCCTACATGTGGT
51063036 AATATGCAAACCCTA
1 AATATGCAAACCCTA
51063051 ATTGTTTATA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.33
Consensus pattern (45 bp):
AATATGCAAACCCTATATGTCATTTATGCAAACCCTACATGTGGT
Found at i:51063047 original size:23 final size:23
Alignment explanation
Indices: 51062946--51063050 Score: 90
Period size: 22 Copynumber: 4.7 Consensus size: 23
51062936 TATCTATTGA
51062946 AATATGCAAACCCTATATGT--T
1 AATATGCAAACCCTATATGTGGT
* *
51062967 ATTTATGCAAACCCTACATGTGGT
1 A-ATATGCAAACCCTATATGTGGT
*** * * *
51062991 AATATATGAGCCTTATATGTCGT
1 AATATGCAAACCCTATATGTGGT
* *
51063014 -TTATGCGAACCCTATATGTGGT
1 AATATGCAAACCCTATATGTGGT
51063036 AATATGCAAACCCTA
1 AATATGCAAACCCTA
51063051 ATTGTTTATA
Statistics
Matches: 62, Mismatches: 18, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
21 1 0.02
22 33 0.53
23 26 0.42
24 2 0.03
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.33
Consensus pattern (23 bp):
AATATGCAAACCCTATATGTGGT
Found at i:51063099 original size:16 final size:16
Alignment explanation
Indices: 51063078--51063117 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
51063068 ACTATATATG
51063078 TGCAAACCCTAATGTA
1 TGCAAACCCTAATGTA
* *
51063094 TGCAAACACTTATGTA
1 TGCAAACCCTAATGTA
51063110 TGCAAACC
1 TGCAAACC
51063118 TTAGGAATGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (16 bp):
TGCAAACCCTAATGTA
Found at i:51063127 original size:15 final size:16
Alignment explanation
Indices: 51063093--51063133 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
51063083 ACCCTAATGT
* *
51063093 ATGCAAACACTTATGT
1 ATGCAAACACTTAGGA
51063109 ATGCAAAC-CTTAGGA
1 ATGCAAACACTTAGGA
51063124 ATGCAAACAC
1 ATGCAAACAC
51063134 CTATGAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (16 bp):
ATGCAAACACTTAGGA
Found at i:51068192 original size:24 final size:24
Alignment explanation
Indices: 51068131--51068186 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
51068121 ACAAATGAAC
51068131 AAAGAAATGGAAGAATTTTGTAAA
1 AAAGAAATGGAAGAATTTTGTAAA
51068155 AAAGAAATGGAAGAATTTTGTAAA
1 AAAGAAATGGAAGAATTTTGTAAA
51068179 AAAGAAAT
1 AAAGAAAT
51068187 ATAAGATCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (24 bp):
AAAGAAATGGAAGAATTTTGTAAA
Found at i:51070477 original size:23 final size:22
Alignment explanation
Indices: 51070451--51070532 Score: 83
Period size: 23 Copynumber: 3.6 Consensus size: 22
51070441 CAGTGAATAA
51070451 TGAAGATTCTCTACGATGAACT
1 TGAAGATTCTCTACGATGAACT
* * * *
51070473 GTGAAAATTTTCTACAATGAACAA
1 -TGAAGATTCTCTACGATGAAC-T
*
51070497 TGAAGATTCTCTACGATTAACAT
1 TGAAGATTCTCTACGATGAAC-T
*
51070520 TGAAGGTTCTCTA
1 TGAAGATTCTCTA
51070533 AAAAATACAA
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
23 48 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (22 bp):
TGAAGATTCTCTACGATGAACT
Found at i:51070858 original size:15 final size:16
Alignment explanation
Indices: 51070829--51070925 Score: 85
Period size: 16 Copynumber: 6.1 Consensus size: 16
51070819 AAAACAAATC
51070829 AAATTTAAGTTTTCAA
1 AAATTTAAGTTTTCAA
*
51070845 AAATTT-ATTTTTC-A
1 AAATTTAAGTTTTCAA
51070859 AAATTTAAGTTTTCAAA
1 AAATTTAAGTTTTC-AA
* *
51070876 AAATTT-TGCTTT-AA
1 AAATTTAAGTTTTCAA
* *
51070890 AAAGTTTCTAGCTTTCAA
1 AAA-TTT-AAGTTTTCAA
*
51070908 AAATTTAAGTTTTTAA
1 AAATTTAAGTTTTCAA
51070924 AA
1 AA
51070926 CAAATCAAGT
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
14 12 0.18
15 15 0.23
16 19 0.29
17 15 0.23
18 5 0.08
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.45
Consensus pattern (16 bp):
AAATTTAAGTTTTCAA
Found at i:51074457 original size:17 final size:16
Alignment explanation
Indices: 51074389--51074459 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
51074379 AAAACAAATC
*
51074389 AAATTTGAGCTTTCAA
1 AAATTTTAGCTTTCAA
* **
51074405 AAATTTAAAATTTCAA
1 AAATTTTAGCTTTCAA
*
51074421 AAATTTTAGCTTTAAA
1 AAATTTTAGCTTTCAA
51074437 AAATTTCTAGCTTTCAA
1 AAATTT-TAGCTTTCAA
51074454 AAATTT
1 AAATTT
51074460 AAGTTTTTAA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
16 31 0.67
17 15 0.33
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.41
Consensus pattern (16 bp):
AAATTTTAGCTTTCAA
Found at i:51087763 original size:16 final size:16
Alignment explanation
Indices: 51087739--51087772 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51087729 TTGACTGAAC
51087739 AATTAGAAAAAAGATA
1 AATTAGAAAAAAGATA
* *
51087755 AATTCGAAAAAGGATA
1 AATTAGAAAAAAGATA
51087771 AA
1 AA
51087773 ACAAATTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.15, T:0.18
Consensus pattern (16 bp):
AATTAGAAAAAAGATA
Found at i:51092322 original size:29 final size:30
Alignment explanation
Indices: 51092278--51092351 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 30
51092268 GGCATTGAAA
* * *
51092278 TCCCTTAATTTTCTCCCCTAT-AGTTTTCG-
1 TCCCTTGATTTCCTCCCCTATAAG-TGTCGT
51092307 TCCCTTGATTTCCTCCCCTATAAGTGTCGT
1 TCCCTTGATTTCCTCCCCTATAAGTGTCGT
*
51092337 TCCCTTGATTCCCTC
1 TCCCTTGATTTCCTC
51092352 AAGGTTTTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
29 23 0.59
30 16 0.41
ACGTcount: A:0.12, C:0.35, G:0.09, T:0.43
Consensus pattern (30 bp):
TCCCTTGATTTCCTCCCCTATAAGTGTCGT
Found at i:51092950 original size:7 final size:7
Alignment explanation
Indices: 51092934--51092984 Score: 66
Period size: 7 Copynumber: 6.9 Consensus size: 7
51092924 ATAATAGTAC
*
51092934 ATTATCT
1 ATTATAT
51092941 ATTATAT
1 ATTATAT
51092948 ATTACATAAT
1 ATT--AT-AT
51092958 ATTATAT
1 ATTATAT
51092965 ATTATAT
1 ATTATAT
51092972 ATTATAT
1 ATTATAT
51092979 ATTATA
1 ATTATA
51092985 CATATTATTG
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
7 31 0.77
8 2 0.05
9 2 0.05
10 5 0.12
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (7 bp):
ATTATAT
Found at i:51092962 original size:17 final size:15
Alignment explanation
Indices: 51092940--51092992 Score: 63
Period size: 14 Copynumber: 3.4 Consensus size: 15
51092930 GTACATTATC
51092940 TATTATATATTACATAA
1 TATTATATATTA-AT-A
51092957 TATTATATATT-ATA
1 TATTATATATTAATA
*
51092971 TATTATATATTATACA
1 TATTATATATTA-ATA
51092987 TATTAT
1 TATTAT
51092993 TGTTTATTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
14 12 0.36
15 2 0.06
16 8 0.24
17 11 0.33
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTATATATTAATA
Found at i:51097091 original size:13 final size:13
Alignment explanation
Indices: 51097073--51097099 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51097063 TCTTAAGCCA
51097073 CTACAATGTTATT
1 CTACAATGTTATT
51097086 CTACAATGTTATT
1 CTACAATGTTATT
51097099 C
1 C
51097100 GTAATGTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.44
Consensus pattern (13 bp):
CTACAATGTTATT
Found at i:51098008 original size:36 final size:35
Alignment explanation
Indices: 51097953--51098023 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 35
51097943 CCATTGATTA
51097953 CATTAACATCATCATCATCAAATCACAACTTCATT
1 CATTAACATCATCATCATCAAATCACAACTTCATT
*
51097988 CATT-ACATTCATACATCATCAAATCGCAACTTCATT
1 CATTAACA-TCAT-CATCATCAAATCACAACTTCATT
51098024 GCTGCCACCC
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 3 0.09
35 8 0.24
36 22 0.67
ACGTcount: A:0.38, C:0.28, G:0.01, T:0.32
Consensus pattern (35 bp):
CATTAACATCATCATCATCAAATCACAACTTCATT
Found at i:51102944 original size:30 final size:32
Alignment explanation
Indices: 51102887--51102950 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 32
51102877 TAGTAATGGT
**
51102887 AAAATTATAATTTGGTCTTTCTAAAAATAATA
1 AAAATTATAATTTAATCTTTCTAAAAATAATA
*
51102919 AAAATT-TAATTTAATCTTT-TAAAAATTATA
1 AAAATTATAATTTAATCTTTCTAAAAATAATA
51102949 AA
1 AA
51102951 TATATAGATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 12 0.41
31 11 0.38
32 6 0.21
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (32 bp):
AAAATTATAATTTAATCTTTCTAAAAATAATA
Found at i:51105588 original size:30 final size:30
Alignment explanation
Indices: 51105554--51105631 Score: 84
Period size: 30 Copynumber: 2.6 Consensus size: 30
51105544 AACATAAGTT
* *
51105554 AGCTTGTGTGAGAAACTTTGATAAAAAGAC
1 AGCTTGTGTGAGCAACTTTAATAAAAAGAC
* ** * * *
51105584 AGCTTGTATGAGCAACCCTAATATAATGTC
1 AGCTTGTGTGAGCAACTTTAATAAAAAGAC
51105614 AGCTTGTGTGAGCAACTT
1 AGCTTGTGTGAGCAACTT
51105632 ATTCACCCAT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.29
Consensus pattern (30 bp):
AGCTTGTGTGAGCAACTTTAATAAAAAGAC
Found at i:51108868 original size:11 final size:11
Alignment explanation
Indices: 51108852--51108886 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
51108842 ATAAAAGCTT
*
51108852 AATTATAATTA
1 AATTATAAGTA
51108863 AATTATAAGTA
1 AATTATAAGTA
*
51108874 AATTATAGGTA
1 AATTATAAGTA
51108885 AA
1 AA
51108887 GGGACTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (11 bp):
AATTATAAGTA
Found at i:51110196 original size:17 final size:17
Alignment explanation
Indices: 51110174--51110207 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51110164 TTTGAAATGG
*
51110174 AAAATGTTATTGAAATA
1 AAAATGCTATTGAAATA
51110191 AAAATGCTATTGAAATA
1 AAAATGCTATTGAAATA
51110208 GCAAGTGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.32
Consensus pattern (17 bp):
AAAATGCTATTGAAATA
Found at i:51111138 original size:21 final size:21
Alignment explanation
Indices: 51111114--51111155 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
51111104 ATTTTATCAC
51111114 TTTTGAAATAAGGTATCGATA
1 TTTTGAAATAAGGTATCGATA
* **
51111135 TTTTGACATTTGGTATCGATA
1 TTTTGAAATAAGGTATCGATA
51111156 CTTGACCATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.31, C:0.07, G:0.19, T:0.43
Consensus pattern (21 bp):
TTTTGAAATAAGGTATCGATA
Found at i:51127157 original size:222 final size:222
Alignment explanation
Indices: 51126770--51127217 Score: 815
Period size: 222 Copynumber: 2.0 Consensus size: 222
51126760 GAAATATTCT
* *
51126770 GAGTTGTTTCGAAAACATAATGTGATGTTACACATTTAGAGCCAATGACTAACTCATGTGTGGGG
1 GAGTTGTTTCGAAAACATAATGTGATGTTACACATTTAGAGCCAATGACTAAATCAGGTGTGGGG
51126835 CATCACAAATAGGATGTGTTGGGATAGGTTCATCATATACTAACGGATAAGTAATCCGTTGATAG
66 CATCACAAATAGGATGTGTTGGGATAGGTTCATCATATACTAACGGATAAGTAATCCGTTGATAG
*
51126900 AAACCTACTTATACTTACAGAATTGGATTGTCAATAAAAGTAAGCATTGGTATATGATGAACTAT
131 AAACCTACTTATACTTACAGAATTGGATCGTCAATAAAAGTAAGCATTGGTATATGATGAACTAT
51126965 TTGTAGCAAGAAATCCTAAATAGAATG
196 TTGTAGCAAGAAATCCTAAATAGAATG
51126992 GAGTTGTTTCGAAAACATAATGTGATGTTACACATTTAGAGCCAATGACTAAATCAGGTGTGGGG
1 GAGTTGTTTCGAAAACATAATGTGATGTTACACATTTAGAGCCAATGACTAAATCAGGTGTGGGG
* * *
51127057 CGTCACAAATAGGATGTGTTGGGATAGGTTCATCATTTACTAATGGATAAGTAATCCGTTGATAG
66 CATCACAAATAGGATGTGTTGGGATAGGTTCATCATATACTAACGGATAAGTAATCCGTTGATAG
51127122 AAACCTACTTATACTTACAGAATTGGATCGTCAATAAAAGTAAGCATTGGTATATGATGAACTAT
131 AAACCTACTTATACTTACAGAATTGGATCGTCAATAAAAGTAAGCATTGGTATATGATGAACTAT
* **
51127187 TTTTAGTGAGAAATCCTAAATAGAATG
196 TTGTAGCAAGAAATCCTAAATAGAATG
51127214 GAGT
1 GAGT
51127218 AAAAATTTTC
Statistics
Matches: 217, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
222 217 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (222 bp):
GAGTTGTTTCGAAAACATAATGTGATGTTACACATTTAGAGCCAATGACTAAATCAGGTGTGGGG
CATCACAAATAGGATGTGTTGGGATAGGTTCATCATATACTAACGGATAAGTAATCCGTTGATAG
AAACCTACTTATACTTACAGAATTGGATCGTCAATAAAAGTAAGCATTGGTATATGATGAACTAT
TTGTAGCAAGAAATCCTAAATAGAATG
Found at i:51127528 original size:29 final size:29
Alignment explanation
Indices: 51127496--51127616 Score: 100
Period size: 29 Copynumber: 4.2 Consensus size: 29
51127486 TACAATCTAG
* * *
51127496 AGTGGTGGGTAGTCCAAAGTGTAAGTCAA
1 AGTGGTGGATAGTCCAAAGTGCAAGCCAA
* * ** *
51127525 AGTGATAGCCATTCCAAAGTGCAAGCCAA
1 AGTGGTGGATAGTCCAAAGTGCAAGCCAA
* *
51127554 AGTGGTGGATAGTCCAAAGTACAAGCTAA
1 AGTGGTGGATAGTCCAAAGTGCAAGCCAA
* * * * *
51127583 AGTGGCGAACAATCC-AAGTACAAGCCAA
1 AGTGGTGGATAGTCCAAAGTGCAAGCCAA
51127611 AGTGGT
1 AGTGGT
51127617 AGACAGTCTA
Statistics
Matches: 72, Mismatches: 20, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
28 17 0.24
29 55 0.76
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.19
Consensus pattern (29 bp):
AGTGGTGGATAGTCCAAAGTGCAAGCCAA
Found at i:51132099 original size:21 final size:20
Alignment explanation
Indices: 51132050--51132099 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
51132040 TTGGGTCCTT
51132050 ATTTATGTT-TTCTTATTTA
1 ATTTATGTTGTTCTTATTTA
51132069 ATTTAT-TTGTT-TTATTATA
1 ATTTATGTTGTTCTTATT-TA
51132088 ATTTATGCTTGT
1 ATTTATG-TTGT
51132100 AATTTTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 7 0.26
19 16 0.59
21 4 0.15
ACGTcount: A:0.22, C:0.04, G:0.08, T:0.66
Consensus pattern (20 bp):
ATTTATGTTGTTCTTATTTA
Found at i:51132238 original size:4 final size:4
Alignment explanation
Indices: 51132229--51132267 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
51132219 ACAAATTGTT
* * *
51132229 TTTA TTTA TTTA TTTA TTTA TTCA TTTG TTTG TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
51132268 TTTTTCTTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:51132355 original size:11 final size:11
Alignment explanation
Indices: 51132341--51132367 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
51132331 CGTTATTATA
51132341 TTATTATTTTC
1 TTATTATTTTC
51132352 TTATTATTTTC
1 TTATTATTTTC
51132363 TTATT
1 TTATT
51132368 TCTTTATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (11 bp):
TTATTATTTTC
Found at i:51132374 original size:19 final size:19
Alignment explanation
Indices: 51132321--51132381 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
51132311 TGCGCAATTA
* *
51132321 TTATTATTATCGTTATTATA
1 TTATTATTTTC-TTATTATT
51132341 TTATTATTTTCTTATTATT
1 TTATTATTTTCTTATTATT
*
51132360 TTCTTA-TTTCTTTATTTATT
1 TTATTATTTTC-TTA-TTATT
51132380 TT
1 TT
51132382 TGATATTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 4 0.11
19 15 0.42
20 17 0.47
ACGTcount: A:0.21, C:0.07, G:0.02, T:0.70
Consensus pattern (19 bp):
TTATTATTTTCTTATTATT
Found at i:51137293 original size:29 final size:29
Alignment explanation
Indices: 51137254--51137352 Score: 128
Period size: 29 Copynumber: 3.4 Consensus size: 29
51137244 ACGAACTATT
* *
51137254 TGGCGGACAGTCCAAAATACAAGCCAAAG
1 TGGCAGACAGTCCAAAGTACAAGCCAAAG
* * *
51137283 TGGCAGGCAGTTCAAAGTGCAAGCCAAAG
1 TGGCAGACAGTCCAAAGTACAAGCCAAAG
*
51137312 TGGCAGACAATCCAAAGTACAAGCCAAAG
1 TGGCAGACAGTCCAAAGTACAAGCCAAAG
51137341 TGGC-GAACAGTC
1 TGGCAG-ACAGTC
51137353 TAACTACGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 1 0.02
29 58 0.98
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.12
Consensus pattern (29 bp):
TGGCAGACAGTCCAAAGTACAAGCCAAAG
Found at i:51146211 original size:24 final size:24
Alignment explanation
Indices: 51146180--51146227 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
51146170 TGACTTTAAA
51146180 AATAATTTAATTGAGTCGATTTAT
1 AATAATTTAATTGAGTCGATTTAT
51146204 AATAATTTAATTGAGTCGATTTAT
1 AATAATTTAATTGAGTCGATTTAT
51146228 TCGATGTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (24 bp):
AATAATTTAATTGAGTCGATTTAT
Found at i:51151494 original size:24 final size:24
Alignment explanation
Indices: 51151466--51151521 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
51151456 TAAATATAGA
**
51151466 AATAAATAACAAAGATTTTATGCT
1 AATAAATAACAAAGATACTATGCT
** *
51151490 AATAAATGTCAAATATACTATGCT
1 AATAAATAACAAAGATACTATGCT
51151514 AATAAATA
1 AATAAATA
51151522 CTAAATCTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.09, G:0.07, T:0.32
Consensus pattern (24 bp):
AATAAATAACAAAGATACTATGCT
Found at i:51156481 original size:27 final size:26
Alignment explanation
Indices: 51156439--51156495 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
51156429 TCTTCTTCCT
*
51156439 TTTTTTCCATTTTAAAA-AATAGTTAA
1 TTTTTTCCATTTTAAAAGAA-ACTTAA
51156465 TTTTTT-CATTTTATAAAAGAAACTTAA
1 TTTTTTCCA-TTT-TAAAAGAAACTTAA
51156492 TTTT
1 TTTT
51156496 CAGTTTTACT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 2 0.07
26 9 0.33
27 14 0.52
28 2 0.07
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.53
Consensus pattern (26 bp):
TTTTTTCCATTTTAAAAGAAACTTAA
Found at i:51159229 original size:59 final size:60
Alignment explanation
Indices: 51159160--51159283 Score: 187
Period size: 59 Copynumber: 2.1 Consensus size: 60
51159150 AGAAATTGTG
* *
51159160 AAAATAGAGAAATGAGAAACATTTGGAAATAAAATGTGG-TTTTCTCCAAAATGAAAATA
1 AAAATAGAGAAATGAGAAACATTTAGAAATAAAATGTGGTTTTTCTCCAAAACGAAAATA
* * * *
51159219 AAAATTGAGAAATGAGAAACATTTAGAAATGAAATGTGGTTTTTCTCTAAAACGAAAATG
1 AAAATAGAGAAATGAGAAACATTTAGAAATAAAATGTGGTTTTTCTCCAAAACGAAAATA
51159279 AAAAT
1 AAAAT
51159284 GGATAATTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
59 36 0.62
60 22 0.38
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.27
Consensus pattern (60 bp):
AAAATAGAGAAATGAGAAACATTTAGAAATAAAATGTGGTTTTTCTCCAAAACGAAAATA
Found at i:51160431 original size:16 final size:15
Alignment explanation
Indices: 51160399--51160433 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
51160389 ATGTAAATAA
51160399 ATATAATAATAACAT
1 ATATAATAATAACAT
*
51160414 ATATAATCAATTACAT
1 ATATAAT-AATAACAT
51160430 ATAT
1 ATAT
51160434 TAAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATAATAACAT
Found at i:51170554 original size:18 final size:18
Alignment explanation
Indices: 51170531--51170566 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
51170521 TCACATTGAT
51170531 TGTAAGTGAGGTATTTGG
1 TGTAAGTGAGGTATTTGG
51170549 TGTAAGTGAGGTATTTGG
1 TGTAAGTGAGGTATTTGG
51170567 GAAAGTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (18 bp):
TGTAAGTGAGGTATTTGG
Found at i:51171142 original size:21 final size:21
Alignment explanation
Indices: 51171095--51171144 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
51171085 ACACTTGTAT
51171095 AATTAATAAAATATTTTAATA
1 AATTAATAAAATATTTTAATA
* *
51171116 ATTTAATAAAAT-TTTTGATTA
1 AATTAATAAAATATTTT-AATA
51171137 AATTAATA
1 AATTAATA
51171145 TATTTATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
AATTAATAAAATATTTTAATA
Found at i:51176057 original size:4 final size:4
Alignment explanation
Indices: 51176048--51176077 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
51176038 ATACTATAAT
51176048 TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TA
51176078 TAGCGTAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:51177127 original size:18 final size:18
Alignment explanation
Indices: 51177100--51177141 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
51177090 ACTTTTTTAT
51177100 TTTTTATTTT-ATAAATA-
1 TTTTTATTTTCAT-AATAC
51177117 TTTTTAGTTTTCATAATAC
1 TTTTTA-TTTTCATAATAC
51177136 TTTTTA
1 TTTTTA
51177142 AAGCCAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.27
18 8 0.36
19 8 0.36
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTATTTTCATAATAC
Found at i:51179261 original size:24 final size:24
Alignment explanation
Indices: 51179233--51179280 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
51179223 TTAAAGTAAA
51179233 AGATTCTACCATACTAAAGGTGTG
1 AGATTCTACCATACTAAAGGTGTG
51179257 AGATTCTACCATACTAAAGGTGTG
1 AGATTCTACCATACTAAAGGTGTG
51179281 GCAACATCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (24 bp):
AGATTCTACCATACTAAAGGTGTG
Found at i:51180018 original size:42 final size:42
Alignment explanation
Indices: 51179959--51180041 Score: 166
Period size: 42 Copynumber: 2.0 Consensus size: 42
51179949 TGGAAGAGGA
51179959 ACTGCCCTATCTATCTTGAAGAGGTCCAGAATGTAACACCCT
1 ACTGCCCTATCTATCTTGAAGAGGTCCAGAATGTAACACCCT
51180001 ACTGCCCTATCTATCTTGAAGAGGTCCAGAATGTAACACCC
1 ACTGCCCTATCTATCTTGAAGAGGTCCAGAATGTAACACCC
51180042 CTAACCCATA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (42 bp):
ACTGCCCTATCTATCTTGAAGAGGTCCAGAATGTAACACCCT
Found at i:51181602 original size:27 final size:27
Alignment explanation
Indices: 51181572--51181650 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 27
51181562 ATTCAAGGGT
* *
51181572 ACTCTTTAGAGCACATA-ATCAGGAAGC
1 ACTCTCTAGAGC-CATATAACAGGAAGC
*
51181599 ACTCTCTCGAGCCATATAACAGGAAG-
1 ACTCTCTAGAGCCATATAACAGGAAGC
* *
51181625 -CTCATGT-GAGCCATGTAACAGGAAGC
1 ACTC-TCTAGAGCCATATAACAGGAAGC
51181651 TTATCCGGGC
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
25 20 0.45
26 6 0.14
27 18 0.41
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.20
Consensus pattern (27 bp):
ACTCTCTAGAGCCATATAACAGGAAGC
Found at i:51181746 original size:24 final size:25
Alignment explanation
Indices: 51181719--51181767 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
51181709 TAACGGGTAA
*
51181719 CTCCGAAGAGCTAT-TATTAGGAAG
1 CTCCGAAGAGCTATATATCAGGAAG
*
51181743 CTCCGAATAGCTATATATCAGGAAG
1 CTCCGAAGAGCTATATATCAGGAAG
51181768 TTTAAGCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.24
Consensus pattern (25 bp):
CTCCGAAGAGCTATATATCAGGAAG
Done.