Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 164 of 211
Found at i:51182186 original size:12 final size:12
Alignment explanation
Indices: 51182169--51182194 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51182159 ATTCAATCAT
51182169 ATAAATATACAC
1 ATAAATATACAC
51182181 ATAAATATACAC
1 ATAAATATACAC
51182193 AT
1 AT
51182195 TCAATTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (12 bp):
ATAAATATACAC
Found at i:51182695 original size:161 final size:161
Alignment explanation
Indices: 51182430--51182744 Score: 605
Period size: 161 Copynumber: 2.0 Consensus size: 161
51182420 CTTGAATTTC
*
51182430 TTTCTCTTAGTTACGGTTTTCATAGAAAATTTGGGGAAGATGATGAAATAAAATTATTTTATTCA
1 TTTCTCTTAGCTACGGTTTTCATAGAAAATTTGGGGAAGATGATGAAATAAAATTATTTTATTCA
51182495 ATTAATTAACTTATCATCTTTTAATTTTTCAACTTTCCAATTTCATCATTTTCTTTTCTTGAATT
66 ATTAATTAACTTATCATCTTTTAATTTTTCAACTTTCCAATTTCATCATTTTCTTTTCTTGAATT
51182560 TCCATGAATGAGTCATTATAATTAGCTAGGG
131 TCCATGAATGAGTCATTATAATTAGCTAGGG
51182591 TTTCTCTTAGCTA-GGTTTTTCATAGAAAATTTGGGGAAGATGATGAAATAAAATTATTTTATTC
1 TTTCTCTTAGCTACGG-TTTTCATAGAAAATTTGGGGAAGATGATGAAATAAAATTATTTTATTC
51182655 AATTAATTAACTTATCATCTTTTAATTTTTCAACTTTCCAATTTCATCATTTTCTTTTCTTGAAT
65 AATTAATTAACTTATCATCTTTTAATTTTTCAACTTTCCAATTTCATCATTTTCTTTTCTTGAAT
51182720 TTCCATGAATGAGTCATTATAATTA
130 TTCCATGAATGAGTCATTATAATTA
51182745 TCTAATAATT
Statistics
Matches: 152, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
160 2 0.01
161 150 0.99
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.46
Consensus pattern (161 bp):
TTTCTCTTAGCTACGGTTTTCATAGAAAATTTGGGGAAGATGATGAAATAAAATTATTTTATTCA
ATTAATTAACTTATCATCTTTTAATTTTTCAACTTTCCAATTTCATCATTTTCTTTTCTTGAATT
TCCATGAATGAGTCATTATAATTAGCTAGGG
Found at i:51185249 original size:39 final size:38
Alignment explanation
Indices: 51185202--51185334 Score: 144
Period size: 39 Copynumber: 3.4 Consensus size: 38
51185192 CATATTCACT
*
51185202 TTTAAGCATATATCACGTTACACATATAATCATATAACA
1 TTTAAGCATATATCAC-TTACACATATAATCACATAACA
* * *
51185241 TTTAAGCATATATCACAATACTCATATAATCACATAATA
1 TTTAAGCATATATCAC-TTACACATATAATCACATAACA
* *
51185280 TTTAAGCATATAT-A-TCAACACTAATGTAATCACATAACA
1 TTTAAGCATATATCACT-TACAC--ATATAATCACATAACA
*
51185319 TTCAAGCATATATCAC
1 TTTAAGCATATATCAC
51185335 AATACTCAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
37 3 0.04
38 1 0.01
39 73 0.94
40 1 0.01
ACGTcount: A:0.44, C:0.19, G:0.05, T:0.32
Consensus pattern (38 bp):
TTTAAGCATATATCACTTACACATATAATCACATAACA
Found at i:51187376 original size:496 final size:495
Alignment explanation
Indices: 51186070--51190530 Score: 8562
Period size: 495 Copynumber: 9.0 Consensus size: 495
51186060 TTTTGAAAAA
51186070 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
* *
51186135 TTAAGAGGCAATTAGACCAGATTCTAAAATATAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
*
51186200 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCTAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
*
51186265 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATGAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51186330 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
*
51186395 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACTATTTTTTATTGAAAAAAAAGGGGACCGACTT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
51186460 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
391 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
*
51186525 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCA
456 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
51186565 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
*
51186630 TTAATAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
51186695 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51186760 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51186825 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
* *
51186890 TCAATCAAACGTTTGGTTTTCATTTGTTTAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
*
51186955 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTAAAAATGA
391 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
51187020 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
456 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
51187060 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
51187125 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAAACCCCCATTTATAGTTTTATTTT
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACT-AAAAACCCCCATTTATAGTTTTATTTT
51187190 CACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAAT
130 CACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAAT
*
51187255 TTTCTTTGCCAAACTTAAATTCATTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAA
195 TTTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAA
* * *
51187320 TTCAAGAAAAACACCTAAAAACACCATAGATTCCTCTATTGTCAAGCTTATTGGTTTTTTGGGTT
260 TCCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTT
*
51187385 TTCGATCAAACGTTTGGTATTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACT
325 TTCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACT
*
51187450 TTGAAAATAAAATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
390 TTGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
51187515 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
455 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
*
51187556 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTTAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
51187621 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
*
51187686 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATCCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
*
51187751 TTCCTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51187816 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
*
51187881 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAAGGGGATCGACT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTG-AAAAAAAAGGGGACCGACT
*
51187946 TTGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGCAAATG
390 TTGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
51188011 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
455 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
51188052 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
*
51188117 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATACTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
51188182 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51188247 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51188312 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
51188377 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAAGGGGACCGACT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTG-AAAAAAAAGGGGACCGACT
*
51188442 TTGAAAATAATATGAAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
390 TTGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
51188507 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
455 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
*
51188548 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAATGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
*
51188613 TTAAAAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
*
51188678 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATTCCTTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51188743 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51188808 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
*
51188873 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTTAAAAAAAAAGGGGACCGACT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTA-TTGAAAAAAAAGGGGACCGACT
*
51188938 TTGAAAATAAAATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
390 TTGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
51189003 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
455 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
51189044 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
*
51189109 TTAAGAGGCAATTAGACCAAATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
*
51189174 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCATTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51189239 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
*
51189304 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTGTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
51189369 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
*
51189434 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGCAAATGA
391 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
*
51189499 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTTG
456 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
51189539 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
51189604 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
51189669 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51189734 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51189799 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
*
51189864 TCGATCAAACGTTTGGTTTTCATTTGTTTAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
51189929 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
391 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
*
51189994 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCA
456 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
51190034 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
51190099 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
51190164 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51190229 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51190294 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
51190359 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
*
51190424 TGAAAATAATATGAAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
391 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
51190489 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
456 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
51190529 GT
1 GT
51190531 TACGCACGAG
Statistics
Matches: 3898, Mismatches: 65, Indels: 6
0.98 0.02 0.00
Matches are distributed among these distances:
495 1953 0.50
496 1943 0.50
497 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (495 bp):
GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCG
Found at i:51188160 original size:991 final size:990
Alignment explanation
Indices: 51186070--51190530 Score: 8562
Period size: 991 Copynumber: 4.5 Consensus size: 990
51186060 TTTTGAAAAA
51186070 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
* *
51186135 TTAAGAGGCAATTAGACCAGATTCTAAAATATAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
*
51186200 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCTAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
*
51186265 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATGAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51186330 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
*
51186395 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACTATTTTTTATTGAAAAAAAAGGGGACCGACTT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
51186460 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
391 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
*
51186525 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCAGTGTTTTAGAAACCTATAATTTTAA
456 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGTGTTTTAGAAACCTATAATTTTAA
*
51186590 AAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTTTTAATAGGCAATTAGACCAGATTTT
521 AAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTTTTAAGAGGCAATTAGACCAGATTTT
51186655 AAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTGT
586 AAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTGT
51186720 TCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATTTTCTTTGCCAAACTTAAATTCCTTT
651 TCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATTTTCTTTGCCAAACTTAAATTCCTTT
51186785 GATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACCA
716 GATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACCA
*
51186850 TAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCAATCAAACGTTTGGTTTTCATTT
781 TAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCGATCAAACGTTTGGTTTTCATTT
*
51186915 GTTTAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTTTGAAAATAATATGGAAATCGCCACC
846 GTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTTTGAAAATAATATGGAAATCGCCACC
*
51186980 GATCTTTTATTGAGATGTGATCGGATCACCTTAAAAATGATTTTGGTCTGCGAAATTTGAGAAAA
911 GATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGATTTTGGTCTGCGAAATTTGAGAAAA
51187045 TAGGTTCGGGAGTCG
976 TAGGTTCGGGAGTCG
51187060 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
51187125 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAAACCCCCATTTATAGTTTTATTTT
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACT-AAAAACCCCCATTTATAGTTTTATTTT
51187190 CACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAAT
130 CACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAAT
*
51187255 TTTCTTTGCCAAACTTAAATTCATTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAA
195 TTTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAA
* * *
51187320 TTCAAGAAAAACACCTAAAAACACCATAGATTCCTCTATTGTCAAGCTTATTGGTTTTTTGGGTT
260 TCCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTT
*
51187385 TTCGATCAAACGTTTGGTATTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACT
325 TTCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACT
*
51187450 TTGAAAATAAAATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
390 TTGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
51187515 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGTGTTTTAGAAACCTATAATTTTA
455 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGTGTTTTAGAAACCTATAATTTTA
*
51187580 AAAATAGGACTAATTTATAAAAGAGTCCAAACTTAGAGTTTTTAAGAGGCAATTAGACCAGATTT
520 AAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTTTTAAGAGGCAATTAGACCAGATTT
51187645 TAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTG
585 TAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTG
* *
51187710 TTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATCCAATTTTCCTTGCCAAACTTAAATTCCTT
650 TTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATTTTCTTTGCCAAACTTAAATTCCTT
51187775 TGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACC
715 TGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACC
51187840 ATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCGATCAAACGTTTGGTTTTCATT
780 ATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCGATCAAACGTTTGGTTTTCATT
*
51187905 TGTTGAAACCATTTTTTATTGAAAAAAAAAGGGGATCGACTTTGAAAATAATATGGAAATCGCCA
845 TGTTGAAACCATTTTTTATTG-AAAAAAAAGGGGACCGACTTTGAAAATAATATGGAAATCGCCA
*
51187970 CCGATCTTTTATTGAGATGTGATCGGATCACCTTGCAAATGATTTTGGTCTGCGAAATTTGAGAA
909 CCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGATTTTGGTCTGCGAAATTTGAGAA
51188035 AATAGGTTCGGGAGTCG
974 AATAGGTTCGGGAGTCG
51188052 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
*
51188117 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATACTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
51188182 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51188247 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51188312 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
51188377 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAAGGGGACCGACT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTG-AAAAAAAAGGGGACCGACT
*
51188442 TTGAAAATAATATGAAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
390 TTGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATG
51188507 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGTGTTTTAGAAACCTATAATTTTA
455 ATTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGTGTTTTAGAAACCTATAATTTTA
* *
51188572 AAAATAGGACTAATTTATAAATGAGTCCAAACTCAGAGTTTTTAAAAGGCAATTAGACCAGATTT
520 AAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTTTTAAGAGGCAATTAGACCAGATTT
51188637 TAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTG
585 TAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTG
*
51188702 TTCTTGCCATTCCTTTGTTCTCCCAATTCTTCCATTCAATTTTCTTTGCCAAACTTAAATTCCTT
650 TTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATTTTCTTTGCCAAACTTAAATTCCTT
51188767 TGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACC
715 TGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACC
51188832 ATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCGATCAAACGTTTGGTTTTCATT
780 ATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCGATCAAACGTTTGGTTTTCATT
* *
51188897 TGTTGAAACCATTTTTTATTTAAAAAAAAAGGGGACCGACTTTGAAAATAAAATGGAAATCGCCA
845 TGTTGAAACCATTTTTTA-TTGAAAAAAAAGGGGACCGACTTTGAAAATAATATGGAAATCGCCA
51188962 CCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGATTTTGGTCTGCGAAATTTGAGAA
909 CCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGATTTTGGTCTGCGAAATTTGAGAA
51189027 AATAGGTTCGGGAGTCG
974 AATAGGTTCGGGAGTCG
51189044 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
*
51189109 TTAAGAGGCAATTAGACCAAATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
*
51189174 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCATTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51189239 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
*
51189304 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTGTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
51189369 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
*
51189434 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGCAAATGA
391 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
*
51189499 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTTGGTGTTTTAGAAACCTATAATTTTAA
456 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGTGTTTTAGAAACCTATAATTTTAA
51189564 AAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTTTTAAGAGGCAATTAGACCAGATTTT
521 AAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTTTTAAGAGGCAATTAGACCAGATTTT
51189629 AAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTGT
586 AAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTGT
51189694 TCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATTTTCTTTGCCAAACTTAAATTCCTTT
651 TCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATTTTCTTTGCCAAACTTAAATTCCTTT
51189759 GATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACCA
716 GATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACCA
51189824 TAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCGATCAAACGTTTGGTTTTCATTT
781 TAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCGATCAAACGTTTGGTTTTCATTT
*
51189889 GTTTAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTTTGAAAATAATATGGAAATCGCCACC
846 GTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTTTGAAAATAATATGGAAATCGCCACC
51189954 GATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGATTTTGGTCTGCGAAATTTGAGAAAA
911 GATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGATTTTGGTCTGCGAAATTTGAGAAAA
*
51190019 TAGGTTCGGGAGTCA
976 TAGGTTCGGGAGTCG
51190034 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
1 GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
51190099 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
66 TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
51190164 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
131 ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
51190229 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
196 TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
51190294 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
261 CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
51190359 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
326 TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
*
51190424 TGAAAATAATATGAAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
391 TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
51190489 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGT
456 TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGT
51190531 TACGCACGAG
Statistics
Matches: 3408, Mismatches: 59, Indels: 8
0.98 0.02 0.00
Matches are distributed among these distances:
990 716 0.21
991 1494 0.44
992 1196 0.35
993 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (990 bp):
GTGTTTTAGAAACCTATAATTTTAAAAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTT
TTAAGAGGCAATTAGACCAGATTTTAAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTC
ACGTTAGTTCTTCTTGATAACTTGTTCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATT
TTCTTTGCCAAACTTAAATTCCTTTGATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAAT
CCAAGAAAAACACCCAAAAACACCATAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTT
TCGATCAAACGTTTGGTTTTCATTTGTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTT
TGAAAATAATATGGAAATCGCCACCGATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGA
TTTTGGTCTGCGAAATTTGAGAAAATAGGTTCGGGAGTCGGTGTTTTAGAAACCTATAATTTTAA
AAATAGGACTAATTTATAAAAGAGTCCAAACTCAGAGTTTTTAAGAGGCAATTAGACCAGATTTT
AAAATCTAAACTAAAAACCCCCATTTATAGTTTTATTTTCACGTTAGTTCTTCTTGATAACTTGT
TCTTGCCATCCCTTTGTTCTCCCAATTCTTCCATTCAATTTTCTTTGCCAAACTTAAATTCCTTT
GATTCCTATCATTTTCCAAATAATTAAACCTCCATAAAATCCAAGAAAAACACCCAAAAACACCA
TAGATTCCTCTATTGTCAAGCTTGTTGGTTTTTTGGGTTTTCGATCAAACGTTTGGTTTTCATTT
GTTGAAACCATTTTTTATTGAAAAAAAAGGGGACCGACTTTGAAAATAATATGGAAATCGCCACC
GATCTTTTATTGAGATGTGATCGGATCACCTTGAAAATGATTTTGGTCTGCGAAATTTGAGAAAA
TAGGTTCGGGAGTCG
Found at i:51194083 original size:46 final size:46
Alignment explanation
Indices: 51194013--51194259 Score: 408
Period size: 46 Copynumber: 5.4 Consensus size: 46
51194003 ACTTCTCATT
* * * *
51194013 AGTGACAAAGTGATAAGTGTTAGCTTTAGCTATAGTTATCTGATAA
1 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
51194059 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
1 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
*
51194105 AGTGACAAAGTGATAAGTGTTAGCTTTAGCTACACTTATCTGATCA
1 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
*
51194151 AGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATCA
1 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
*
51194197 AGTGACAAAGTGATAAGTGGTAGCCTTAGCTACACTTATCTGATC-
1 AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
*
51194242 AGGGAC-AAGTGATAAGTG
1 AGTGACAAAGTGATAAGTG
51194260 ATCATACGTA
Statistics
Matches: 193, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
44 12 0.06
45 5 0.03
46 176 0.91
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (46 bp):
AGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCA
Found at i:51194965 original size:15 final size:15
Alignment explanation
Indices: 51194945--51194980 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
51194935 AACAACATGA
*
51194945 AATAATAGGAATAAT
1 AATAATAGCAATAAT
51194960 AATAATAGCAATAAT
1 AATAATAGCAATAAT
51194975 AATAAT
1 AATAAT
51194981 GATAAAAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (15 bp):
AATAATAGCAATAAT
Found at i:51198757 original size:24 final size:24
Alignment explanation
Indices: 51198726--51198796 Score: 83
Period size: 24 Copynumber: 2.9 Consensus size: 24
51198716 GAGCTTTCTA
51198726 ATTTTGGCTCTCTTGAGCTTCCC-
1 ATTTTGGCTCTCTTGAGCTTCCCG
51198749 ATTTATGGCTCT-TATGAGCTTCCCG
1 ATTT-TGGCTCTCT-TGAGCTTCCCG
* *
51198774 ATATTTGGCTCGCATGAGCTTCC
1 AT-TTTGGCTCTCTTGAGCTTCC
51198797 AGTTACATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
23 5 0.12
24 17 0.41
25 17 0.41
26 2 0.05
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39
Consensus pattern (24 bp):
ATTTTGGCTCTCTTGAGCTTCCCG
Found at i:51198790 original size:25 final size:23
Alignment explanation
Indices: 51198726--51198796 Score: 88
Period size: 25 Copynumber: 3.0 Consensus size: 23
51198716 GAGCTTTCTA
*
51198726 ATTTTGGCTCTCTTGAGCTTCCC
1 ATTTTGGCTCTCATGAGCTTCCC
*
51198749 ATTTATGGCTCTTATGAGCTTCCC
1 ATTT-TGGCTCTCATGAGCTTCCC
*
51198773 GATATTTGGCTCGCATGAGCTTCC
1 -AT-TTTGGCTCTCATGAGCTTCC
51198797 AGTTACATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.10
24 17 0.41
25 18 0.44
26 2 0.05
ACGTcount: A:0.14, C:0.27, G:0.20, T:0.39
Consensus pattern (23 bp):
ATTTTGGCTCTCATGAGCTTCCC
Found at i:51200515 original size:39 final size:39
Alignment explanation
Indices: 51200461--51200562 Score: 159
Period size: 39 Copynumber: 2.6 Consensus size: 39
51200451 CATGTTTTTT
*
51200461 TGAGTATTGTGATATATGCTTGAATATTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATATTATGTGATTATA
*
51200500 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATATTATGTGATTATA
* * *
51200539 AGTGTAATGTGATATATGCTTAAA
1 TGAGTATTGTGATATATGCTTAAA
51200563 AGTGAATATG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.32, C:0.03, G:0.21, T:0.44
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATATTATGTGATTATA
Found at i:51202874 original size:22 final size:21
Alignment explanation
Indices: 51202849--51202889 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
51202839 TTTTTACCCC
*
51202849 TAATTTCAAAATTTATACAATT
1 TAATCTCAAAATTT-TACAATT
*
51202871 TAATCTCTAAATTTTACAA
1 TAATCTCAAAATTTTACAA
51202890 AATCATCAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (21 bp):
TAATCTCAAAATTTTACAATT
Found at i:51205787 original size:55 final size:55
Alignment explanation
Indices: 51205677--51205812 Score: 150
Period size: 55 Copynumber: 2.5 Consensus size: 55
51205667 ATTTCCCAAA
* ** * *
51205677 AATATTGCTTCTTTTGGATTTATT-TTTTTATATTTAAATCGACTTTCTTATTGG
1 AATATTGCTTCTTTTGAATCAATTGTTTATATATTTAAATCGACTTTCATATTGG
* * *
51205731 AATATTGCTTCTTTTGAATCGATTGTTTATATGTTTAAATCGA-TTATCATGTTGG
1 AATATTGCTTCTTTTGAATCAATTGTTTATATATTTAAATCGACTT-TCATATTGG
* * *
51205786 AATACTACTTATTTTGAATCAATTGTT
1 AATATTGCTTCTTTTGAATCAATTGTT
51205813 ATGGATGAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
54 23 0.33
55 46 0.67
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.52
Consensus pattern (55 bp):
AATATTGCTTCTTTTGAATCAATTGTTTATATATTTAAATCGACTTTCATATTGG
Found at i:51205898 original size:61 final size:60
Alignment explanation
Indices: 51205798--51205954 Score: 190
Period size: 61 Copynumber: 2.6 Consensus size: 60
51205788 TACTACTTAT
* * * * *
51205798 TTTGAATCAATTGTTATGGAT-GAATACTACTTCTCCTTCTTTTGAATTGATTGTTTATATG
1 TTTGAATCGATTGTTATGG-TGGAATA-TTCTTCTTCTTCTTTTGAATCGACTGTTTATATG
* *
51205859 TTTGAATTGATTGTTATGGTGGAATATTGCTTCTTCTTCTTTTGAATCGACTGTTTGTATG
1 TTTGAATCGATTGTTATGGTGGAATATT-CTTCTTCTTCTTTTGAATCGACTGTTTATATG
* *
51205920 TTTAAATCGATTGTTATGTTGGAATACTTCTTCTT
1 TTTGAATCGATTGTTATGGTGGAATA-TTCTTCTT
51205955 TTGAATCGAT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
60 2 0.02
61 79 0.95
62 2 0.02
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.50
Consensus pattern (60 bp):
TTTGAATCGATTGTTATGGTGGAATATTCTTCTTCTTCTTTTGAATCGACTGTTTATATG
Found at i:51205954 original size:55 final size:56
Alignment explanation
Indices: 51205833--51205968 Score: 166
Period size: 61 Copynumber: 2.4 Consensus size: 56
51205823 ACTACTTCTC
* * *
51205833 CTTCTTTTGAATTGATTGTTTATATGTTTGAATTGATTGTTATGGTGGAATATTGCTTCTT
1 CTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGGTGGAATA-----TCTT
* * *
51205894 CTTCTTTTGAATCGACTGTTTGTATGTTTAAATCGATTGTTATGTTGGAATA-CTT
1 CTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGGTGGAATATCTT
51205949 CTTCTTTTGAATCGATTGTT
1 CTTCTTTTGAATCGATTGTT
51205969 ATTGTGGAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
55 22 0.32
61 46 0.68
ACGTcount: A:0.20, C:0.10, G:0.18, T:0.52
Consensus pattern (56 bp):
CTTCTTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGGTGGAATATCTT
Found at i:51205967 original size:34 final size:36
Alignment explanation
Indices: 51205924--51206008 Score: 104
Period size: 34 Copynumber: 2.3 Consensus size: 36
51205914 TGTATGTTTA
51205924 AATCGATTGTTA-TGTTGGAATA-CTTCTTC-TTTTG
1 AATCGATTGTTATTG-TGGAATATCTTCTTCTTTTTG
51205958 AATCGATTGTTATTGTGGAATATTGCTTCTTCTTATTTTG
1 AATCGATTGTTATTGTGGAATA-T-CTTCTTC-T-TTTTG
51205998 AATCGATTGTT
1 AATCGATTGTT
51206009 TATATATTTA
Statistics
Matches: 44, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
34 19 0.43
35 2 0.05
37 7 0.16
40 16 0.36
ACGTcount: A:0.21, C:0.11, G:0.18, T:0.51
Consensus pattern (36 bp):
AATCGATTGTTATTGTGGAATATCTTCTTCTTTTTG
Found at i:51205976 original size:95 final size:95
Alignment explanation
Indices: 51205859--51206065 Score: 333
Period size: 95 Copynumber: 2.2 Consensus size: 95
51205849 TGTTTATATG
* * * *
51205859 TTTGAATTGATTGTTATGGTGGAATATTGCTTCTTCTTCTTTTGAATCGACTGTTTGTATGTTTA
1 TTTGAATCGATTGTTATGGTGGAATATTGCTTCTTCTTATTTTGAATCGACTGTTTATATATTTA
51205924 AATCGATTGTTATGTTGGAATACTTCTTCT
66 AATCGATTGTTATGTTGGAATACTTCTTCT
* *
51205954 TTTGAATCGATTGTTATTGTGGAATATTGCTTCTTCTTATTTTGAATCGATTGTTTATATATTTA
1 TTTGAATCGATTGTTATGGTGGAATATTGCTTCTTCTTATTTTGAATCGACTGTTTATATATTTA
* *
51206019 AATCGATTGTTATGTTGGATTATTTCTTCT
66 AATCGATTGTTATGTTGGAATACTTCTTCT
*
51206049 ATTGAATCGATTGTTAT
1 TTTGAATCGATTGTTAT
51206066 ATGTTTAAAT
Statistics
Matches: 103, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
95 103 1.00
ACGTcount: A:0.22, C:0.09, G:0.17, T:0.52
Consensus pattern (95 bp):
TTTGAATCGATTGTTATGGTGGAATATTGCTTCTTCTTATTTTGAATCGACTGTTTATATATTTA
AATCGATTGTTATGTTGGAATACTTCTTCT
Found at i:51205979 original size:156 final size:152
Alignment explanation
Indices: 51205705--51206240 Score: 632
Period size: 156 Copynumber: 3.5 Consensus size: 152
51205695 TTTATTTTTT
*
51205705 TATATTTAAATCGACTT-TCT-TATTGGAATATTG---CTTCTTTTGAATCGATTGTTTATATGT
1 TATATTTAAATCGA-TTGT-TATGTTGGAATATTGTTTCTTCTTTTGAATCGATTGTTTATATGT
* * *
51205765 TTAAATCGATTATCATGTTGGAATACTACTTATTTTGAATCAATTGTTATGGAT-GAATACTACT
64 TTAAATCGATTATTATGTTGGAATACTTCTTCTTTTGAATCAATTGTTATGG-TGGAATACT-CT
* *
51205829 TCTCCTTCTTTTGAATTGATTGTTTA
127 TCTTCTTCTTTTGAATCGATTGTTTA
* * * * * *
51205855 TATGTTTGAATTGATTGTTATGGTGGAATATTGCTTCTTCTTCTTTTGAATCGACTGTTTGTATG
1 TATATTTAAATCGATTGTTATGTTGGAATATTG--T-TTCTTCTTTTGAATCGATTGTTTATATG
* * * *
51205920 TTTAAATCGATTGTTATGTTGGAATACTTCTTCTTTTGAATCGATTGTTATTGTGGAATATTGCT
63 TTTAAATCGATTATTATGTTGGAATACTTCTTCTTTTGAATCAATTGTTATGGTGGAATACT-CT
*
51205985 TCTTCTTATTTTGAATCGATTGTTTA
127 TCTTCTTCTTTTGAATCGATTGTTTA
* *
51206011 TATATTTAAATCGATTGTTATGTTGG---ATTATTTCTTCTATTGAATCGATTG-TTATATGTTT
1 TATATTTAAATCGATTGTTATGTTGGAATATTGTTTCTTCTTTTGAATCGATTGTTTATATGTTT
*
51206072 AAATCGATTATTATGTTAGAATACTGT-TTCTTTTGAATCAATTGTTATGGTGGAATATTGCTCT
66 AAATCGATTATTATGTTGGAATACT-TCTTCTTTTGAATCAATTGTTATGGTGGAATA---CTC-
* *
51206136 TTTTTTTTCTTTTGAATCGATTGTTTA
126 TTCTTCTTCTTTTGAATCGATTGTTTA
* *
51206163 TATATTTAAATCGATTGTTATGTTGGAATATTG---CTTCTTTTGAATTGATTGTTTATATGTTC
1 TATATTTAAATCGATTGTTATGTTGGAATATTGTTTCTTCTTTTGAATCGATTGTTTATATGTTT
*
51206225 AAATCGATTGTTATGT
66 AAATCGATTATTATGT
51206241 AGCACGTCTA
Statistics
Matches: 329, Mismatches: 39, Indels: 33
0.82 0.10 0.08
Matches are distributed among these distances:
149 63 0.19
150 42 0.13
151 2 0.01
152 67 0.20
153 27 0.08
155 4 0.01
156 124 0.38
ACGTcount: A:0.24, C:0.09, G:0.16, T:0.51
Consensus pattern (152 bp):
TATATTTAAATCGATTGTTATGTTGGAATATTGTTTCTTCTTTTGAATCGATTGTTTATATGTTT
AAATCGATTATTATGTTGGAATACTTCTTCTTTTGAATCAATTGTTATGGTGGAATACTCTTCTT
CTTCTTTTGAATCGATTGTTTA
Found at i:51206054 original size:55 final size:54
Alignment explanation
Indices: 51205993--51206240 Score: 241
Period size: 55 Copynumber: 4.8 Consensus size: 54
51205983 CTTCTTCTTA
* *
51205993 TTTTGAATCGATTGTTTATATATTTAAATCGATTGTTATGTTGGATTATTTCTTC
1 TTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATATTT-TTC
* * * *
51206048 TATTGAATCGATTG-TTATATGTTTAAATCGATTATTATGTTAGAATACTGTTTC
1 TTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATA-TTTTTC
* * ** * *
51206102 TTTTGAATCAATTG--T-TATGGTGGAAT--ATTGCTCT-TT----T-TTTTTC
1 TTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATATTTTTC
* *
51206145 TTTTGAATCGATTGTTTATATATTTAAATCGATTGTTATGTTGGAATATTGCTTC
1 TTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATATT-TTTC
* *
51206200 TTTTGAATTGATTGTTTATATGTTCAAATCGATTGTTATGT
1 TTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGT
51206241 AGCACGTCTA
Statistics
Matches: 154, Mismatches: 26, Indels: 26
0.75 0.13 0.13
Matches are distributed among these distances:
43 18 0.12
45 2 0.01
46 7 0.05
48 6 0.04
49 4 0.03
50 5 0.03
52 8 0.05
53 2 0.01
54 46 0.30
55 56 0.36
ACGTcount: A:0.25, C:0.07, G:0.16, T:0.52
Consensus pattern (54 bp):
TTTTGAATCGATTGTTTATATGTTTAAATCGATTGTTATGTTGGAATATTTTTC
Found at i:51208380 original size:39 final size:39
Alignment explanation
Indices: 51208337--51208472 Score: 152
Period size: 39 Copynumber: 3.5 Consensus size: 39
51208327 CATTTTCACT
*
51208337 TTTAAGCATATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
51208376 TTTAAGCATATATCATAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* * *
51208415 TTCAAGCATATAT-ATCAACA-ATCATGTAATCACATAACA
1 TTTAAGCATATATCA-CAATACA-CATATAATCACATAACA
* * *
51208454 TTCAAGAATAT-TCTCAATA
1 TTTAAGCATATATCACAATA
51208473 TTCAAAAACA
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
38 6 0.07
39 77 0.93
ACGTcount: A:0.46, C:0.19, G:0.04, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:51211203 original size:16 final size:16
Alignment explanation
Indices: 51211182--51211214 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
51211172 AAGCTAAAAC
*
51211182 TTAATCGACAACTTTA
1 TTAATCCACAACTTTA
51211198 TTAATCCACAACTTTA
1 TTAATCCACAACTTTA
51211214 T
1 T
51211215 ATTTCAACCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.21, G:0.03, T:0.39
Consensus pattern (16 bp):
TTAATCCACAACTTTA
Found at i:51219957 original size:19 final size:19
Alignment explanation
Indices: 51219935--51219974 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
51219925 GAAGGGTGGC
*
51219935 AATATCAAATCTGGGTGAA
1 AATATCAAATCCGGGTGAA
*
51219954 AATATCATATCCGGGTGAA
1 AATATCAAATCCGGGTGAA
51219973 AA
1 AA
51219975 GAGGTTTCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (19 bp):
AATATCAAATCCGGGTGAA
Found at i:51221508 original size:22 final size:22
Alignment explanation
Indices: 51221480--51221537 Score: 98
Period size: 22 Copynumber: 2.6 Consensus size: 22
51221470 CATACCCTTT
51221480 AAAAATTCTCTCAATTTACTTC
1 AAAAATTCTCTCAATTTACTTC
*
51221502 AAAAATTCTCTCAATTTCCTTC
1 AAAAATTCTCTCAATTTACTTC
*
51221524 CAAAATTCTCTCAA
1 AAAAATTCTCTCAA
51221538 ACTCTCAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.36, C:0.26, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAAATTCTCTCAATTTACTTC
Found at i:51221545 original size:30 final size:30
Alignment explanation
Indices: 51221509--51221567 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51221499 TTCAAAAATT
*
51221509 CTCTCAATTTCCTTCCAAAATTC-TCTCAAA
1 CTCTCAAATTCCTTCCAAAA-TCGTCTCAAA
51221539 CTCTCAAATTCCTTCCAAAATCGTCTCAA
1 CTCTCAAATTCCTTCCAAAATCGTCTCAA
51221568 TTTCCTTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.31, C:0.34, G:0.02, T:0.34
Consensus pattern (30 bp):
CTCTCAAATTCCTTCCAAAATCGTCTCAAA
Found at i:51221566 original size:52 final size:51
Alignment explanation
Indices: 51221487--51221589 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
51221477 TTTAAAAATT
* * *
51221487 CTCTCAATTTACTTCAAAAATTCTCTCAATTTCCTTCCAAAATTCTCTCAAA
1 CTCTCAAATTACTTCAAAAATTCTCTCAATTTCCTTCAAAAAATCTC-CAAA
* *
51221539 CTCTCAAATTCCTTCCAAAA-TCGTCTCAATTTCCTTCAAAAAATCTCCAAA
1 CTCTCAAATTACTTCAAAAATTC-TCTCAATTTCCTTCAAAAAATCTCCAAA
51221590 TCCATATTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 6 0.13
52 39 0.87
ACGTcount: A:0.34, C:0.30, G:0.01, T:0.35
Consensus pattern (51 bp):
CTCTCAAATTACTTCAAAAATTCTCTCAATTTCCTTCAAAAAATCTCCAAA
Found at i:51221679 original size:29 final size:30
Alignment explanation
Indices: 51221618--51221680 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
51221608 TTCCATTCAA
51221618 TTTTATTTTTTTAAAGAAAATTTTAAATAT
1 TTTTATTTTTTTAAAGAAAATTTTAAATAT
*
51221648 TTTTATTTTTTTAAA-ATAATTTTAAA-AT
1 TTTTATTTTTTTAAAGAAAATTTTAAATAT
51221676 TTTTA
1 TTTTA
51221681 ATATTTTCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 7 0.22
29 10 0.31
30 15 0.47
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (30 bp):
TTTTATTTTTTTAAAGAAAATTTTAAATAT
Found at i:51221687 original size:29 final size:30
Alignment explanation
Indices: 51221618--51221687 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
51221608 TTCCATTCAA
*
51221618 TTTTATTTTTTTAAAGAAAATTTTAAATAT
1 TTTTATATTTTTAAAGAAAATTTTAAATAT
* *
51221648 TTTTATTTTTTTAAA-ATAATTTTAAA-AT
1 TTTTATATTTTTAAAGAAAATTTTAAATAT
51221676 TTTTAATATTTT
1 TTTT-ATATTTT
51221688 CAATAATGGC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 6 0.16
29 16 0.43
30 15 0.41
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (30 bp):
TTTTATATTTTTAAAGAAAATTTTAAATAT
Found at i:51223993 original size:23 final size:23
Alignment explanation
Indices: 51223967--51224291 Score: 364
Period size: 23 Copynumber: 13.3 Consensus size: 23
51223957 ATTTGATTAA
**
51223967 AATTAAAAACCCTAATTTAATTT
1 AATTAAAAACCCTAACCTAATTT
* *
51223990 AATT-AAATCCCTAACTTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
51224012 AATTTAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
51224035 AATTAAAAACCCTAACCTAATTTAATTT
1 AATTAAAAACCCTAACC-----TAATTT
51224063 AATTAAAAACCCTAACCTAATTTAATTT
1 AATTAAAAACCCTAACC-----TAATTT
51224091 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
51224114 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
51224137 AATTAAAATCCCTAACCCTAACCTAATTT
1 AATT-AAA-----AACCCTAACCTAATTT
*
51224166 AATTAAAAACCCTAACCTAACTT
1 AATTAAAAACCCTAACCTAATTT
51224189 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
51224212 AATTTAATTTAAAACCCTAACCTAATTT
1 AA-TT-A---AAAACCCTAACCTAATTT
*
51224240 AATTAAAAACTCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
* * *
51224263 AGTTAAAATCCCTAACATAATTT
1 AATTAAAAACCCTAACCTAATTT
51224286 AATTAA
1 AATTAA
51224292 TGTAAAAACC
Statistics
Matches: 272, Mismatches: 13, Indels: 34
0.85 0.04 0.11
Matches are distributed among these distances:
22 20 0.07
23 149 0.55
24 5 0.02
25 1 0.00
26 1 0.00
27 2 0.01
28 74 0.27
29 20 0.07
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (23 bp):
AATTAAAAACCCTAACCTAATTT
Found at i:51224072 original size:51 final size:51
Alignment explanation
Indices: 51223967--51224263 Score: 373
Period size: 51 Copynumber: 5.9 Consensus size: 51
51223957 ATTTGATTAA
** *
51223967 AATTAAAAACCCTAATTTAATTTAATT-AAATCCCTAA-C----TTAATTT
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTT
*
51224012 AATTTAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTT
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTT
51224063 AATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAACC-----TAATTT
1 AATTAAAAACCCTAACC-----TAATTTAATTAAAAACCCTAACCTAATTTAATTT
* **
51224114 AATTAAAAACCCTAACCTAATTTAATTAAAATCCCTAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA-CCTAATTTAATTT
*
51224166 AATTAAAAACCCTAACCTAACTTAATTAAAAACCCTAACCTAATTTAATTT
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTT
* *
51224217 AATTTAAAACCCTAACCTAATTTAATTAAAAACTCTAACCTAATTTA
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTA
51224264 GTTAAAATCC
Statistics
Matches: 222, Mismatches: 13, Indels: 28
0.84 0.05 0.11
Matches are distributed among these distances:
45 24 0.11
46 29 0.13
47 3 0.01
51 101 0.45
52 42 0.19
56 23 0.10
ACGTcount: A:0.46, C:0.20, G:0.00, T:0.34
Consensus pattern (51 bp):
AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAATTT
Found at i:51224289 original size:51 final size:51
Alignment explanation
Indices: 51223977--51224306 Score: 316
Period size: 51 Copynumber: 6.6 Consensus size: 51
51223967 AATTAAAAAC
* * *
51223977 CCTAATTTAATTTAATT-AAATCCCTAACTTAATTTAATTTAAAACCCTAA
1 CCTAATTTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
51224027 CC-----TAATTTAATTAAAAACCCTAACCTAATTTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTTAATTAAAAACCCTAACC-----TAATTTAATTAAAAACCCTAA
51224078 CCTAATTTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
* ****
51224129 CCTAATTTAATTAAAATCCCTAACCCTAACCTAATTTAATTAAAAACCCTAA
1 CCTAATTTAATT-TAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
*
51224181 CC-----TAACTTAATTAAAAACCCTAACCTAATTTAATTTAATTTAAAACCCTAA
1 CCTAATTTAATTTAATTAAAAACCCTAACCTAATTTAA-TT-A---AAAACCCTAA
* * *
51224232 CC-----TAATTTAATTAAAAACTCTAACCTAATTTAGTTAAAATCCCTAA
1 CCTAATTTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
*
51224278 CATAATTTAA-TTAATGTAAAAACCCTAAC
1 CCTAATTTAATTTAAT-TAAAAACCCTAAC
51224307 ATAACTCAGC
Statistics
Matches: 237, Mismatches: 20, Indels: 45
0.78 0.07 0.15
Matches are distributed among these distances:
45 10 0.04
46 41 0.17
47 6 0.03
48 1 0.00
49 1 0.00
50 9 0.04
51 110 0.46
52 36 0.15
56 23 0.10
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (51 bp):
CCTAATTTAATTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAA
Found at i:51224390 original size:56 final size:57
Alignment explanation
Indices: 51224319--51224428 Score: 161
Period size: 56 Copynumber: 1.9 Consensus size: 57
51224309 AACTCAGCGG
* ** *
51224319 ATTTGATAATCTTACTAACCATTAACACACTTTTTTGGGCT-TAATAATTTTACATA
1 ATTTGATAATCTTACTAACCATTAACAAAAGTTTTTGGGATGTAATAATTTTACATA
51224375 ATTTGATAAGT-TTACTAACCATTAACAAAAGTTTTTGGGATGTAATAATTTTAC
1 ATTTGATAA-TCTTACTAACCATTAACAAAAGTTTTTGGGATGTAATAATTTTAC
51224429 CTAGTTTTAC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
56 35 0.73
57 13 0.27
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (57 bp):
ATTTGATAATCTTACTAACCATTAACAAAAGTTTTTGGGATGTAATAATTTTACATA
Found at i:51227800 original size:126 final size:125
Alignment explanation
Indices: 51227572--51227805 Score: 441
Period size: 126 Copynumber: 1.9 Consensus size: 125
51227562 GCAATTTGAC
51227572 ACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGT
1 ACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGT
* *
51227637 CCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTTGTATCAGCGATTTTAT
66 CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTTGTATCAGCGATTTTAT
51227697 ACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCG
1 ACTATTTGCTCAG-AAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCG
51227762 TCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCT
65 TCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCT
51227806 GCTGGAGGCG
Statistics
Matches: 106, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
125 13 0.12
126 93 0.88
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (125 bp):
ACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAAATCGCGT
CCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTTGTATCAGCGATTTTAT
Found at i:51227817 original size:126 final size:124
Alignment explanation
Indices: 51227565--51227844 Score: 436
Period size: 126 Copynumber: 2.2 Consensus size: 124
51227555 CGAGGGCGCA
*
51227565 ATTTGACACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAA
1 ATTTCACACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAA
* * *
51227630 ATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCATATAGCATCCTTGTATCAGCG
66 ATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTTGGA-CAGCG
* *
51227690 ATTTTATACTATTTGCTCAGAAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGA
1 ATTTCACACTATTTGCTCAG-AAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGA
*
51227755 AATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGCTGGA-GGCG
65 AATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCT--TGGACAGCG
* *
51227816 ATTTCCCACTATTTGATCAGAAACGTCAA
1 ATTTCACACTATTTGCTCAGAAACGTCAA
51227845 CTCGAAAAAA
Statistics
Matches: 142, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
125 27 0.19
126 112 0.79
128 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (124 bp):
ATTTCACACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGCGAA
ATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTTGGACAGCG
Found at i:51229392 original size:26 final size:26
Alignment explanation
Indices: 51229342--51229391 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
51229332 TCCATTTCTT
51229342 TTAAATTGGTACTTATAGTTTTTTTC
1 TTAAATTGGTACTTATAGTTTTTTTC
51229368 TTAAATTGGTA-TTCA-AGTTTTTTT
1 TTAAATTGGTACTT-ATAGTTTTTTT
51229392 TTATGTCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.24, C:0.06, G:0.12, T:0.58
Consensus pattern (26 bp):
TTAAATTGGTACTTATAGTTTTTTTC
Found at i:51234838 original size:22 final size:22
Alignment explanation
Indices: 51234813--51234857 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
51234803 TTCAGGGGAA
51234813 CAGAAACCATTTAGCAAAAGGG
1 CAGAAACCATTTAGCAAAAGGG
*
51234835 CAGAAACCATTTAGCTAAAGGG
1 CAGAAACCATTTAGCAAAAGGG
51234857 C
1 C
51234858 CTTGGTAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.20, G:0.22, T:0.16
Consensus pattern (22 bp):
CAGAAACCATTTAGCAAAAGGG
Found at i:51245612 original size:20 final size:21
Alignment explanation
Indices: 51245579--51245620 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
51245569 TAATTAAATG
*
51245579 ATTATTATAATTCAT-TTTAA
1 ATTATAATAATTCATATTTAA
*
51245599 ATTATAATATTTCATATTTAA
1 ATTATAATAATTCATATTTAA
51245620 A
1 A
51245621 AAACCATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTATAATAATTCATATTTAA
Found at i:51249074 original size:20 final size:20
Alignment explanation
Indices: 51249051--51249088 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51249041 GGTTTTTCTC
51249051 CTAATGGATAATTTTTTTTT
1 CTAATGGATAATTTTTTTTT
* *
51249071 CTAATGGCTAGTTTTTTT
1 CTAATGGATAATTTTTTT
51249089 GCTATATAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.58
Consensus pattern (20 bp):
CTAATGGATAATTTTTTTTT
Found at i:51249894 original size:20 final size:20
Alignment explanation
Indices: 51249869--51249907 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
51249859 CGCCGCCAAC
**
51249869 GTCACGTCGTCACCACCACG
1 GTCACGTCACCACCACCACG
51249889 GTCACGTCACCACCACCAC
1 GTCACGTCACCACCACCAC
51249908 TTGCGCCGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.49, G:0.15, T:0.13
Consensus pattern (20 bp):
GTCACGTCACCACCACCACG
Found at i:51250794 original size:3 final size:3
Alignment explanation
Indices: 51250786--51250872 Score: 52
Period size: 3 Copynumber: 28.3 Consensus size: 3
51250776 TTAGCATTTT
* * *
51250786 TTA TTA TTA TTTA GTTA TTA TTA TTA TTG TCA TTA TTA TCT- TTA CTA
1 TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * * *
51250833 TTT TTA TTA TTA -TA TTTA TTA ATA CTA TTG TTA GTA TTA T
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T
51250873 GTTTTCTTAT
Statistics
Matches: 63, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
2 3 0.05
3 51 0.81
4 9 0.14
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:51251302 original size:16 final size:16
Alignment explanation
Indices: 51251281--51251330 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
51251271 CGTACATACC
51251281 TATATTTTATATTTTT
1 TATATTTTATATTTTT
* **
51251297 TATATTTTATAATCCT
1 TATATTTTATATTTTT
*
51251313 TATA-TTTATATCTTT
1 TATATTTTATATTTTT
51251328 TAT
1 TAT
51251331 TTATTTTCTT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
15 10 0.37
16 17 0.63
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (16 bp):
TATATTTTATATTTTT
Found at i:51256456 original size:23 final size:23
Alignment explanation
Indices: 51256430--51256477 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
51256420 TTCTTGAGTA
*
51256430 ATGGATCTCTGGAACTTCCCGAT
1 ATGGATCGCTGGAACTTCCCGAT
* *
51256453 ATGGCTCGCTTGAACTTCCCGAT
1 ATGGATCGCTGGAACTTCCCGAT
51256476 AT
1 AT
51256478 ATGGCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (23 bp):
ATGGATCGCTGGAACTTCCCGAT
Found at i:51260300 original size:9 final size:9
Alignment explanation
Indices: 51260286--51260310 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
51260276 TACAATGACT
51260286 AAATCGTAA
1 AAATCGTAA
51260295 AAATCGTAA
1 AAATCGTAA
51260304 AAATCGT
1 AAATCGT
51260311 TGTTGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (9 bp):
AAATCGTAA
Found at i:51262763 original size:71 final size:71
Alignment explanation
Indices: 51262639--51262773 Score: 180
Period size: 71 Copynumber: 1.9 Consensus size: 71
51262629 GGGCTTCCAA
* * **
51262639 TTCACGGTAGTTATATAGTCATGGGTTGAAGTATAACCAGGGCTCCCAATTGACTGTGGTTATGT
1 TTCACGATAGTTATATAGTCACGGGTTGAAGTATAACCAGGGCTCCCAATTGACAATGGTTATGT
51262704 GGTCAG
66 GGTCAG
* * * ** *
51262710 TTCACGATGGTTATATGGTCACGGGTTGAAGTATAACTAGGGCTCTTAGTTGACAATGGTTATG
1 TTCACGATAGTTATATAGTCACGGGTTGAAGTATAACCAGGGCTCCCAATTGACAATGGTTATG
51262774 CGATCACGAG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
71 54 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.33
Consensus pattern (71 bp):
TTCACGATAGTTATATAGTCACGGGTTGAAGTATAACCAGGGCTCCCAATTGACAATGGTTATGT
GGTCAG
Found at i:51266301 original size:49 final size:49
Alignment explanation
Indices: 51266248--51266342 Score: 118
Period size: 49 Copynumber: 1.9 Consensus size: 49
51266238 GAGGCCCGAG
* * * *
51266248 TTATACTTGAATCTGTGACTGCATAACCATCGCAAACTAGGAGCCCTAA
1 TTATACTTCAACCCGTGACCGCATAACCATCGCAAACTAGGAGCCCTAA
* ** *
51266297 TTATACTTCAACCCGTGACCGTATAACCATCGTGAACTGGGAGCCC
1 TTATACTTCAACCCGTGACCGCATAACCATCGCAAACTAGGAGCCC
51266343 GAGTTGTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
49 38 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TTATACTTCAACCCGTGACCGCATAACCATCGCAAACTAGGAGCCCTAA
Found at i:51281511 original size:17 final size:18
Alignment explanation
Indices: 51281479--51281512 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51281469 AATTTCTTTT
51281479 CAATTTATACCCTAATTC
1 CAATTTATACCCTAATTC
*
51281497 CAATTTA-ATCCTAATT
1 CAATTTATACCCTAATT
51281513 AACTCATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.24, G:0.00, T:0.41
Consensus pattern (18 bp):
CAATTTATACCCTAATTC
Found at i:51281997 original size:3 final size:3
Alignment explanation
Indices: 51281982--51282032 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
51281972 ATATATTAGT
* *
51281982 TAA TAA TAT TAA TAA TAA TACA TTA TAA TAA T-A TAA T-A TAA T-A
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
51282025 TAA TAA TA
1 TAA TAA TA
51282033 TTTAATTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
2 6 0.15
3 32 0.80
4 2 0.05
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:51282030 original size:13 final size:13
Alignment explanation
Indices: 51281982--51282033 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
51281972 ATATATTAGT
*
51281982 TAATAATATTA-A
1 TAATAATATAATA
* *
51281994 TAATAATACATTA
1 TAATAATATAATA
51282007 TAATAATATAATA
1 TAATAATATAATA
51282020 TAAT-ATAATAATA
1 TAATAAT-ATAATA
51282033 T
1 T
51282034 TTAATTTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
12 10 0.30
13 23 0.70
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATAATATAATA
Found at i:51284633 original size:54 final size:54
Alignment explanation
Indices: 51284569--51284677 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
51284559 TATTGTATAC
* * * * *
51284569 AGAAGATCGTGATCGTAAATCATTAGATC-GTGAGATTTGTAAAATCTCGAAAGT
1 AGAAGATCGTGATCGTAAATCAAT-GAGCAATGAGATTCGTAAAATCTCAAAAGT
*
51284623 AGAAGGTCGTGATCGTAAATCAATGAGCAATGAGATTCGTAAAATCTCAAAAGT
1 AGAAGATCGTGATCGTAAATCAATGAGCAATGAGATTCGTAAAATCTCAAAAGT
51284677 A
1 A
51284678 AAATGTTATA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
53 3 0.06
54 45 0.94
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (54 bp):
AGAAGATCGTGATCGTAAATCAATGAGCAATGAGATTCGTAAAATCTCAAAAGT
Found at i:51284946 original size:54 final size:54
Alignment explanation
Indices: 51284735--51285152 Score: 276
Period size: 54 Copynumber: 8.0 Consensus size: 54
51284725 GAACCAACAA
* * * *
51284735 ACCGTAAGATTCGTAAAATCTCAAAAGT---AGGTCGTGATTGTATATCAACGG
1 ACCGTGAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATTGTAAATCAGCGG
* * * *
51284786 ACAAG-GAGATTCGTAAAATCT-AGAAAGTAGAAGGACATGATCT-TAAATCGGCGA
1 AC-CGTGAGATTCGTAAAATCTCA-AAAGTAGAAGGTCATGAT-TGTAAATCAGCGG
* * * * *
51284840 ACCGTGACATTCGTGAAATCTC----G-A-AAGGTCGTGATTGTAAATTAGCAG
1 ACCGTGAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATTGTAAATCAGCGG
* * * **
51284888 ACCGTGAGATTCGTAAAATCTCAAAAGTTGAAGGTCGTGATCGTAAATCAATGG
1 ACCGTGAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATTGTAAATCAGCGG
* * * * * **
51284942 ACCGTAAGATTCCTAAAATCTCAAAAGT---AGGTCATAATCGTAAACCAGCAA
1 ACCGTGAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATTGTAAATCAGCGG
* * * ***
51284993 ACGGTTAGATTCGTAAAATCTCGAAAGTAGAAGG-CAATGATTGTAAATCAATAG
1 ACCGTGAGATTCGTAAAATCTCAAAAGTAGAAGGTC-ATGATTGTAAATCAGCGG
** * * ** * *
51285047 ACTATGAGCTTTGTAAAATCTCGAAAA-TAGAAGGTTGTGATTGTAAATCAGTGA
1 ACCGTGAGATTCGTAAAATCTC-AAAAGTAGAAGGTCATGATTGTAAATCAGCGG
* * * * *
51285101 ACCGTAAGATTCATAAAATTTCTAATGTAGAAGGTCATGATTGTAAATCAGC
1 ACCGTGAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATTGTAAATCAGC
51285153 ATGACAACCC
Statistics
Matches: 278, Mismatches: 67, Indels: 41
0.72 0.17 0.11
Matches are distributed among these distances:
47 1 0.00
48 36 0.13
49 1 0.00
50 2 0.01
51 62 0.22
52 2 0.01
53 4 0.01
54 166 0.60
55 4 0.01
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26
Consensus pattern (54 bp):
ACCGTGAGATTCGTAAAATCTCAAAAGTAGAAGGTCATGATTGTAAATCAGCGG
Found at i:51284946 original size:102 final size:103
Alignment explanation
Indices: 51284791--51285044 Score: 244
Period size: 105 Copynumber: 2.4 Consensus size: 103
51284781 AACGGACAAG
* *** * * *
51284791 GAGATTCGTAAAATCT-AGAAAGTAGAAGGACATGATCTTAAATCGGCGAACCGTGACATTCGTG
1 GAGATTCGTAAAATCTCA-AAAGTAGAAGG-CATGATCGTAAATCAATGAACCGTAACATTCCTA
* * * * ** *
51284855 AAATCTC-GAA-AGGTCGTGATTGTAAATTAGCAGACCGT
64 AAATCTCAAAAGAGGTCATAATCGTAAACCAGCAAACCGT
* * * *
51284893 GAGATTCGTAAAATCTCAAAAGTTGAAGGTCGTGATCGTAAATCAATGGACCGTAAGATTCCTAA
1 GAGATTCGTAAAATCTCAAAAGTAGAAGG-CATGATCGTAAATCAATGAACCGTAACATTCCTAA
*
51284958 AATCTCAAAAGTAGGTCATAATCGTAAACCAGCAAACGGT
65 AATCTCAAAAG-AGGTCATAATCGTAAACCAGCAAACCGT
* * *
51284998 TAGATTCGTAAAATCTCGAAAGTAGAAGGCAATGATTGTAAATCAAT
1 GAGATTCGTAAAATCTCAAAAGTAGAAGGC-ATGATCGTAAATCAAT
51285045 AGACTATGAG
Statistics
Matches: 122, Mismatches: 25, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
102 57 0.47
103 3 0.02
104 1 0.01
105 61 0.50
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (103 bp):
GAGATTCGTAAAATCTCAAAAGTAGAAGGCATGATCGTAAATCAATGAACCGTAACATTCCTAAA
ATCTCAAAAGAGGTCATAATCGTAAACCAGCAAACCGT
Found at i:51290561 original size:11 final size:12
Alignment explanation
Indices: 51290540--51290568 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
51290530 ATAAACACCA
51290540 AAAATATATTTT
1 AAAATATATTTT
51290552 AAAA-ATATTTT
1 AAAATATATTTT
51290563 AAAATA
1 AAAATA
51290569 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AAAATATATTTT
Found at i:51293042 original size:22 final size:21
Alignment explanation
Indices: 51293008--51293048 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
51292998 TCCCCCCCCC
*
51293008 AATTGATAGAAAATGAAAAAAA
1 AATTGAAAGAAAA-GAAAAAAA
*
51293030 AATTGAAATAAAAGAAAAA
1 AATTGAAAGAAAAGAAAAA
51293049 CAGAAAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (21 bp):
AATTGAAAGAAAAGAAAAAAA
Found at i:51297908 original size:13 final size:13
Alignment explanation
Indices: 51297890--51297921 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
51297880 CTTTCTAGCC
51297890 TTCTACTTTTCCA
1 TTCTACTTTTCCA
51297903 TTCTACTTTTCCA
1 TTCTACTTTTCCA
*
51297916 CTCTAC
1 TTCTAC
51297922 CAAACACACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.16, C:0.34, G:0.00, T:0.50
Consensus pattern (13 bp):
TTCTACTTTTCCA
Found at i:51303313 original size:18 final size:19
Alignment explanation
Indices: 51303273--51303316 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
51303263 GATTAAGTTA
51303273 AAAATGTTTTAATTATGATT
1 AAAAT-TTTTAATTATGATT
*
51303293 AAAATTTTTAATTATTA-T
1 AAAATTTTTAATTATGATT
51303311 AAAATT
1 AAAATT
51303317 AAAAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.30
19 11 0.48
20 5 0.22
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (19 bp):
AAAATTTTTAATTATGATT
Found at i:51303810 original size:31 final size:31
Alignment explanation
Indices: 51303758--51303838 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
51303748 CATCACTTAA
**
51303758 TTAAAAAATTAAAGTTT-AGTCATTAAAATA-
1 TTAAAAAATTTTA-TTTAAGTCATTAAAATAT
* * *
51303788 TTCAAAAATTTTCATTTAAGTCATTGAACTAT
1 TTAAAAAATTTT-ATTTAAGTCATTAAAATAT
51303820 TTAAAAAATTTTATTTAAG
1 TTAAAAAATTTTATTTAAG
51303839 CTACTTAGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
30 12 0.29
31 19 0.45
32 11 0.26
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (31 bp):
TTAAAAAATTTTATTTAAGTCATTAAAATAT
Found at i:51304268 original size:20 final size:20
Alignment explanation
Indices: 51304243--51304280 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
51304233 AAATATTTTG
51304243 AATTTTAAAAATTATTTTAA
1 AATTTTAAAAATTATTTTAA
*
51304263 AATTTTGAAAATTATTTT
1 AATTTTAAAAATTATTTT
51304281 GATTCTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (20 bp):
AATTTTAAAAATTATTTTAA
Found at i:51304452 original size:16 final size:16
Alignment explanation
Indices: 51304413--51304458 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 16
51304403 ATTCAACTCG
* *
51304413 ACTCAAAACTCGAATA
1 ACTCAAAATTCGATTA
51304429 ACTC--AATTCGATTA
1 ACTCAAAATTCGATTA
51304443 ACTCAAAATTCAGATT
1 ACTCAAAATTC-GATT
51304459 TTTTTTTTCG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 12 0.48
16 9 0.36
17 4 0.16
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (16 bp):
ACTCAAAATTCGATTA
Found at i:51306117 original size:30 final size:31
Alignment explanation
Indices: 51306081--51306149 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
51306071 TGATTTCAAT
51306081 TCAGTCACTCAACT-TT-CAAAAAA-TGACAAA
1 TCAGTCACT-AA-TGTTACAAAAAAGTGACAAA
*
51306111 TCAGTCACTAATGTTATAAAAAAGTGACAAA
1 TCAGTCACTAATGTTACAAAAAAGTGACAAA
51306142 TCAGTCAC
1 TCAGTCAC
51306150 CCACAAATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
28 1 0.03
29 4 0.11
30 15 0.43
31 15 0.43
ACGTcount: A:0.45, C:0.20, G:0.10, T:0.25
Consensus pattern (31 bp):
TCAGTCACTAATGTTACAAAAAAGTGACAAA
Found at i:51307930 original size:21 final size:21
Alignment explanation
Indices: 51307904--51308030 Score: 121
Period size: 21 Copynumber: 6.0 Consensus size: 21
51307894 TTTGGGTGGA
*
51307904 TCAGCTTTCACAAGCTTCTGT
1 TCAGCTTTCACGAGCTTCTGT
51307925 TCAGCTTTCACGAGCTTCTGT
1 TCAGCTTTCACGAGCTTCTGT
*
51307946 TCAGCTCTCACGAGCTTCTGT
1 TCAGCTTTCACGAGCTTCTGT
* * *
51307967 TAAGCTCTT-ACGAGTTTTTGT
1 TCAGCT-TTCACGAGCTTCTGT
* * * ** *
51307988 TTAGCTTTTATGATTTTATGT
1 TCAGCTTTCACGAGCTTCTGT
* *
51308009 TCAGCTCTCATGAGCTTCTGT
1 TCAGCTTTCACGAGCTTCTGT
51308030 T
1 T
51308031 GGAGTGTTCG
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
20 2 0.02
21 85 0.97
22 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (21 bp):
TCAGCTTTCACGAGCTTCTGT
Found at i:51308301 original size:17 final size:17
Alignment explanation
Indices: 51308279--51308314 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
51308269 TAATATATAT
51308279 AATGATATAT-TGAAATG
1 AATGATATATGT-AAATG
51308296 AATGATATATGTAAATG
1 AATGATATATGTAAATG
51308313 AA
1 AA
51308315 GAAATAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.94
18 1 0.06
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (17 bp):
AATGATATATGTAAATG
Found at i:51315095 original size:50 final size:50
Alignment explanation
Indices: 51314987--51315283 Score: 285
Period size: 50 Copynumber: 5.8 Consensus size: 50
51314977 ATTTGGGTAA
* * *
51314987 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* *
51315043 AGAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
51315093 AGAGGTCCCATGTAAGGCCATGTCTGGGACATGG-AGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TTGGCACCGAGATG
*** * * *
51315143 AGAGGTCCCCCATAAGACCATGTCTAGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
51315193 AGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* ** * * * *
51315242 AAACATTCCATGTAAGACCATGTTTGGGACATGACTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
51315284 TGTTATTATC
Statistics
Matches: 204, Mismatches: 34, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.00
49 37 0.18
50 123 0.60
51 1 0.00
53 3 0.01
55 1 0.00
56 38 0.19
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:51317514 original size:6 final size:6
Alignment explanation
Indices: 51317503--51317533 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
51317493 TGTACTAATA
*
51317503 AAAATG AAAATG AAAGTG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG AAAATG A
51317534 TGAGCTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:51326935 original size:42 final size:42
Alignment explanation
Indices: 51326839--51326926 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
51326829 GCCAGTGTGA
* *
51326839 TCAGGCCGTGTGGCTCACACGGTCAAGAGACACACCTGTGTC
1 TCAGACCGTGTGGCTCACACGGTCAAGAGACACACCTGTATC
*
51326881 TCAGACCGTGTGGTTCACACGGTCAAGAGACACACCTGTATC
1 TCAGACCGTGTGGCTCACACGGTCAAGAGACACACCTGTATC
51326923 TCAG
1 TCAG
51326927 GTTGTGTGGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (42 bp):
TCAGACCGTGTGGCTCACACGGTCAAGAGACACACCTGTATC
Found at i:51328118 original size:33 final size:34
Alignment explanation
Indices: 51328063--51328138 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 34
51328053 TGGCCCTGCC
* * * *
51328063 ATGGTCTTA-CATTCGTAGTGCCATAACCCAATT
1 ATGGTCTTATCATTAGTAATGCCACAACCCAACT
* *
51328096 ATGGTCTTATCATTAG-AATGCCACAGCCCAGCT
1 ATGGTCTTATCATTAGTAATGCCACAACCCAACT
51328129 ATGGTCTTAT
1 ATGGTCTTAT
51328139 GTGCAAATGC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
33 31 0.86
34 5 0.14
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (34 bp):
ATGGTCTTATCATTAGTAATGCCACAACCCAACT
Found at i:51329705 original size:3 final size:3
Alignment explanation
Indices: 51329697--51329744 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
51329687 ATTCCCACTC
* * * *
51329697 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51329745 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:51329745 original size:18 final size:18
Alignment explanation
Indices: 51329698--51329746 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
51329688 TTCCCACTCA
*
51329698 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
51329716 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
51329734 TAATATTAATACT
1 TAATAATAATACT
51329747 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:51329746 original size:12 final size:12
Alignment explanation
Indices: 51329697--51329744 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
51329687 ATTCCCACTC
*
51329697 ATAATAATAATA
1 ATAATACTAATA
51329709 ATAATACTAATA
1 ATAATACTAATA
51329721 ATAATACTAATA
1 ATAATACTAATA
* *
51329733 CTAATATTAATA
1 ATAATACTAATA
51329745 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:51335926 original size:21 final size:21
Alignment explanation
Indices: 51335884--51335926 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
51335874 TTCACTATAC
*
51335884 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
51335905 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
51335926 A
1 A
51335927 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:51337037 original size:39 final size:37
Alignment explanation
Indices: 51336970--51337062 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
51336960 ACCAGAATGG
* *
51336970 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
51337009 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
51337046 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
51337063 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:51337263 original size:23 final size:25
Alignment explanation
Indices: 51337206--51337273 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 25
51337196 ACATATATTC
*
51337206 TCAATTCAATCACAATTTT-CACACTT
1 TCAATTCAAT-A-ATTTTTCCACACTT
*
51337232 TCAATTCAATCATTTTTCCAC-CTT
1 TCAATTCAATAATTTTTCCACACTT
51337256 TCAA-TCAATAATTATTTC
1 TCAATTCAATAATT-TTTC
51337274 ACAATTCACA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 8 0.22
24 16 0.43
25 3 0.08
26 10 0.27
ACGTcount: A:0.32, C:0.25, G:0.00, T:0.43
Consensus pattern (25 bp):
TCAATTCAATAATTTTTCCACACTT
Found at i:51337424 original size:3 final size:3
Alignment explanation
Indices: 51337416--51337463 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
51337406 ATTCCCACTC
* * * *
51337416 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51337464 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:51337464 original size:18 final size:18
Alignment explanation
Indices: 51337417--51337465 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
51337407 TTCCCACTCA
*
51337417 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
51337435 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
51337453 TAATATTAATACT
1 TAATAATAATACT
51337466 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:51337465 original size:12 final size:12
Alignment explanation
Indices: 51337416--51337463 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
51337406 ATTCCCACTC
*
51337416 ATAATAATAATA
1 ATAATACTAATA
51337428 ATAATACTAATA
1 ATAATACTAATA
51337440 ATAATACTAATA
1 ATAATACTAATA
* *
51337452 CTAATATTAATA
1 ATAATACTAATA
51337464 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:51338132 original size:11 final size:11
Alignment explanation
Indices: 51338116--51338141 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51338106 CTTTTTCTTC
51338116 TTTCTCCCCTG
1 TTTCTCCCCTG
51338127 TTTCTCCCCTG
1 TTTCTCCCCTG
51338138 TTTC
1 TTTC
51338142 GTCTCTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:51338523 original size:21 final size:21
Alignment explanation
Indices: 51338499--51338541 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
51338489 AATAATAACT
51338499 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
51338520 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
51338541 A
1 A
51338542 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:51343608 original size:21 final size:21
Alignment explanation
Indices: 51343566--51343608 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
51343556 TTCACTATAC
*
51343566 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
51343587 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
51343608 A
1 A
51343609 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:51344719 original size:39 final size:37
Alignment explanation
Indices: 51344652--51344744 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
51344642 ACCAGAATGG
* *
51344652 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
51344691 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
51344728 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
51344745 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:51344900 original size:21 final size:21
Alignment explanation
Indices: 51344869--51344918 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
51344859 TTAATAGGGT
*
51344869 ATTTAAATCACATATATTCTCA-
1 ATTTCAATCACA-AT-TTCTCAC
51344891 A-TTCAATCACAATTTCTCAC
1 ATTTCAATCACAATTTCTCAC
51344911 ATTTCAAT
1 ATTTCAAT
51344919 TCAATCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 6 0.24
20 3 0.12
21 15 0.60
22 1 0.04
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTTCAATCACAATTTCTCAC
Found at i:51345104 original size:3 final size:3
Alignment explanation
Indices: 51345096--51345140 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
51345086 ATTCCCACTC
* * * *
51345096 ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
51345141 CTTACCTCAC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:51345141 original size:18 final size:18
Alignment explanation
Indices: 51345096--51345142 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
51345086 ATTCCCACTC
*
51345096 ATAATAATAATAATACTA
1 ATAATAATACTAATACTA
51345114 ATAATAATACTAATACTA
1 ATAATAATACTAATACTA
*
51345132 ATATTAATACT
1 ATAATAATACT
51345143 TACCTCACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAATAATACTAATACTA
Found at i:51345142 original size:12 final size:12
Alignment explanation
Indices: 51345100--51345140 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
51345090 CCACTCATAA
51345100 TAATAATAATAC
1 TAATAATAATAC
51345112 TAATAATAATAC
1 TAATAATAATAC
* *
51345124 TAATACTAATAT
1 TAATAATAATAC
51345136 TAATA
1 TAATA
51345141 CTTACCTCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (12 bp):
TAATAATAATAC
Found at i:51345808 original size:11 final size:11
Alignment explanation
Indices: 51345794--51345819 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
51345784 CTTTTTCTTC
51345794 TTTCTCCCCTG
1 TTTCTCCCCTG
51345805 TTTCTCCCCTG
1 TTTCTCCCCTG
51345816 TTTC
1 TTTC
51345820 GTCTCTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:51346201 original size:21 final size:21
Alignment explanation
Indices: 51346177--51346219 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
51346167 AATAATAACT
51346177 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
51346198 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
51346219 A
1 A
51346220 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:51346982 original size:19 final size:20
Alignment explanation
Indices: 51346953--51346993 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
51346943 CATAATTTCC
51346953 ATGTATCAACATATCAAGAT
1 ATGTATCAACATATCAAGAT
51346973 ATGTAT-AACATATCAAGAT
1 ATGTATCAACATATCAAGAT
51346992 AT
1 AT
51346994 TAATATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.46, C:0.12, G:0.10, T:0.32
Consensus pattern (20 bp):
ATGTATCAACATATCAAGAT
Found at i:51347019 original size:12 final size:12
Alignment explanation
Indices: 51347002--51347036 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
51346992 ATTAATATAT
51347002 ATACATATCATG
1 ATACATATCATG
51347014 ATACATATCATG
1 ATACATATCATG
51347026 ATACATATCAT
1 ATACATATCAT
51347037 TCTCTTACTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (12 bp):
ATACATATCATG
Found at i:51347181 original size:21 final size:21
Alignment explanation
Indices: 51347140--51347183 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
51347130 AAAGCTGAAA
*
51347140 AGCTGAACAAAAACTCGTAAG
1 AGCTGAACAAAAACTCATAAG
* *
51347161 AGCTGAACAGAAACTTATAAG
1 AGCTGAACAAAAACTCATAAG
51347182 AG
1 AG
51347184 TTAAATAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.48, C:0.16, G:0.20, T:0.16
Consensus pattern (21 bp):
AGCTGAACAAAAACTCATAAG
Found at i:51349008 original size:62 final size:60
Alignment explanation
Indices: 51348895--51349009 Score: 133
Period size: 62 Copynumber: 1.9 Consensus size: 60
51348885 GTACAAACTG
* * ***
51348895 TTTTTATATTGTTTCATTTAATAAAATAAAATTTGTTTTGAATATTTTAATAGTCAATTA
1 TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAGTCAATTA
* *
51348955 TTTTTATATT-TTGTCCTATTTAATAAAATAGAAGTTCTTTTGGATAAGGTAATAG
1 TTTTTATATTGTT-T-C-ATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAG
51349010 AAATAATACA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
59 2 0.04
60 11 0.24
61 1 0.02
62 31 0.69
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.50
Consensus pattern (60 bp):
TTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAAGGTAATAGTCAATTA
Found at i:51352362 original size:125 final size:126
Alignment explanation
Indices: 51351997--51352515 Score: 693
Period size: 125 Copynumber: 4.1 Consensus size: 126
51351987 GCCAAGCAGG
* * * *
51351997 AACTACTGTAGAAAAAGGGCATCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAATGCATCT
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * ** *
51352062 TGCTTAAAGCGTTTTTGACACTATTTTTTCAAAATCACCTTCTGAAAATTATTTTTTCA-A
66 TGCTTGAAGCGTTTTTGACACTATTTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAGA
* * * *
51352122 GAACTACTGTATAAAAAGAGCGTCTACATGGGAGCTTTTTTCAGTAATTTTTGTTGACAGTGCAT
1 -AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAA-TTTTGCTGACAGTGCAT
* * * *
51352187 TCTGCTTGAAGCGTTTTTAACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTTCGGA
64 CCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAGA
*
51352250 AACTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTT-AGTAATTTTGCTGACAGTGCATCC
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * * * *
51352314 TGTTTGAAGCGTTTTTGACATTATTTTTTTAGAATTGTCTTCTTAAAATTATTTTTTCAGA
66 TGCTTGAAGCGTTTTTGACACTATTTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAGA
* * * * * * * *
51352375 AACTACTATAGAAAAATAACGTCCAAGTGGGAG-TTTTTTCAGTACTTTTGCTAATAGTGCATCT
1 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
* * *
51352439 TGCTTGAAGCGTTTTTGTCACTATTTTTTCATAATCGTCTTCTCAAAATTAATTTTTCAGA
66 TGCTTGAAGCGTTTTTGACACTATTTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAGA
51352500 AACTACTGTAGAAAAA
1 AACTACTGTAGAAAAA
51352516 AAAATACAAA
Statistics
Matches: 341, Mismatches: 49, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
124 6 0.02
125 186 0.55
126 46 0.13
127 102 0.30
128 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (126 bp):
AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAGA
Found at i:51352661 original size:32 final size:33
Alignment explanation
Indices: 51352612--51352690 Score: 99
Period size: 32 Copynumber: 2.4 Consensus size: 33
51352602 ATTATTTTAA
51352612 AAAACCTCTAAAGCCTAAGTTAATTAAT-TTTCTT
1 AAAACCT-TAAA-CCTAAGTTAATTAATGTTTCTT
* *
51352646 AAAACCTTAAACCTAATTTAATTAATGTTTTTT
1 AAAACCTTAAACCTAAGTTAATTAATGTTTCTT
*
51352679 AAATCC-TAAACC
1 AAAACCTTAAACC
51352691 CTAATTTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
32 20 0.49
33 14 0.34
34 7 0.17
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.38
Consensus pattern (33 bp):
AAAACCTTAAACCTAAGTTAATTAATGTTTCTT
Found at i:51352694 original size:33 final size:31
Alignment explanation
Indices: 51352619--51352698 Score: 97
Period size: 33 Copynumber: 2.5 Consensus size: 31
51352609 TAAAAAACCT
*
51352619 CTAAAGCCTAAGTTAATTAATTTTCTTAAAAC
1 CTAAA-CCTAATTTAATTAATTTTCTTAAAAC
* *
51352651 CTTAAACCTAATTTAATTAATGTTTTTTAAATC
1 C-TAAACCTAATTTAATTAAT-TTTCTTAAAAC
51352684 CTAAACCCTAATTTA
1 CTAAA-CCTAATTTA
51352699 TTTTTTAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
32 19 0.45
33 23 0.55
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (31 bp):
CTAAACCTAATTTAATTAATTTTCTTAAAAC
Found at i:51352711 original size:27 final size:28
Alignment explanation
Indices: 51352673--51352750 Score: 133
Period size: 28 Copynumber: 2.9 Consensus size: 28
51352663 TTAATTAATG
51352673 TTTTTT-AAAT-CCTAAACCCTAATTTA
1 TTTTTTAAAATCCCTAAACCCTAATTTA
*
51352699 TTTTTTAAAATCCCCAAACCCTAATTTA
1 TTTTTTAAAATCCCTAAACCCTAATTTA
51352727 TTTTTTAAAATCCCTAAACCCTAA
1 TTTTTTAAAATCCCTAAACCCTAA
51352751 ATAAATAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.12
27 4 0.08
28 38 0.79
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (28 bp):
TTTTTTAAAATCCCTAAACCCTAATTTA
Found at i:51355777 original size:35 final size:35
Alignment explanation
Indices: 51355731--51355803 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
51355721 CTTCTTGGCC
51355731 TAACGACATTATATGTTTACTTCAAAAAATCTACG
1 TAACGACATTATATGTTTACTTCAAAAAATCTACG
51355766 TAACGACATTATATGTTTACTTCAAAAAATCTACG
1 TAACGACATTATATGTTTACTTCAAAAAATCTACG
51355801 TAA
1 TAA
51355804 TGAATTCAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.34
Consensus pattern (35 bp):
TAACGACATTATATGTTTACTTCAAAAAATCTACG
Found at i:51358614 original size:22 final size:22
Alignment explanation
Indices: 51358592--51358644 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
51358582 GTGATGCTGT
51358592 TTTTTGTGCTG-TTTGGTGTTG
1 TTTTTGTGCTGTTTTGGTGTTG
51358613 -TTTTGATGCTGTTTTGGTGTTG
1 TTTTTG-TGCTGTTTTGGTGTTG
51358635 TTTTTGTGCT
1 TTTTTGTGCT
51358645 ACTTTTTGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.17
21 5 0.17
22 14 0.48
23 5 0.17
ACGTcount: A:0.02, C:0.06, G:0.30, T:0.62
Consensus pattern (22 bp):
TTTTTGTGCTGTTTTGGTGTTG
Found at i:51358625 original size:11 final size:11
Alignment explanation
Indices: 51358557--51358644 Score: 70
Period size: 11 Copynumber: 7.9 Consensus size: 11
51358547 TTTTGTAGGT
51358557 TTTTGGTGCTG
1 TTTTGGTGCTG
* *
51358568 TTTTGTTGTTG
1 TTTTGGTGCTG
* *
51358579 TTGGTGATGCTG
1 TT-TTGGTGCTG
*
51358591 TTTTTTGTGCTG
1 -TTTTGGTGCTG
*
51358603 -TTTGGTGTTG
1 TTTTGGTGCTG
*
51358613 TTTTGATGCTG
1 TTTTGGTGCTG
*
51358624 TTTTGGTGTTG
1 TTTTGGTGCTG
*
51358635 TTTTTGTGCT
1 TTTTGGTGCT
51358645 ACTTTTTGTG
Statistics
Matches: 58, Mismatches: 16, Indels: 6
0.73 0.20 0.08
Matches are distributed among these distances:
10 8 0.14
11 36 0.62
12 12 0.21
13 2 0.03
ACGTcount: A:0.02, C:0.06, G:0.32, T:0.60
Consensus pattern (11 bp):
TTTTGGTGCTG
Found at i:51358650 original size:23 final size:23
Alignment explanation
Indices: 51358603--51358661 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
51358593 TTTTGTGCTG
*
51358603 TTTGGTGTTG-TTTTGATGCTGT
1 TTTGGTGTTGTTTTTGATGCTCT
51358625 TTTGGTGTTGTTTTTG-TGCTACT
1 TTTGGTGTTGTTTTTGATGCT-CT
* *
51358648 TTTTGTGGTGTTTT
1 TTTGGTGTTGTTTT
51358662 ATTGTTCTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.44
23 18 0.56
ACGTcount: A:0.03, C:0.05, G:0.29, T:0.63
Consensus pattern (23 bp):
TTTGGTGTTGTTTTTGATGCTCT
Found at i:51358661 original size:11 final size:11
Alignment explanation
Indices: 51358555--51358661 Score: 58
Period size: 11 Copynumber: 9.5 Consensus size: 11
51358545 TATTTTGTAG
51358555 GTTTTTGGTGCT
1 GTTTTT-GTGCT
*
51358567 G-TTTTGTTGTT
1 GTTTTTG-TGCT
**
51358578 GTTGGTGATGCT
1 GTTTTTG-TGCT
51358590 GTTTTTTGTGCT
1 G-TTTTTGTGCT
* *
51358602 G-TTTGGTGTT
1 GTTTTTGTGCT
51358612 G-TTTTGATGCT
1 GTTTTTG-TGCT
* *
51358623 GTTTTGGTGTT
1 GTTTTTGTGCT
51358634 GTTTTTGTGCT
1 GTTTTTGTGCT
* *
51358645 ACTTTTTGTGGT
1 -GTTTTTGTGCT
51358657 GTTTT
1 GTTTT
51358662 ATTGTTCTTT
Statistics
Matches: 71, Mismatches: 18, Indels: 13
0.70 0.18 0.13
Matches are distributed among these distances:
10 13 0.18
11 28 0.39
12 26 0.37
13 4 0.06
ACGTcount: A:0.03, C:0.06, G:0.31, T:0.61
Consensus pattern (11 bp):
GTTTTTGTGCT
Found at i:51358673 original size:56 final size:56
Alignment explanation
Indices: 51358557--51358673 Score: 128
Period size: 56 Copynumber: 2.1 Consensus size: 56
51358547 TTTTGTAGGT
* * ** * *
51358557 TTTTGGTGCTGTTTTGTTGTTGTTGGTGATGCTGTTTTTTGTGCTGTTTGGTGTTG
1 TTTTGATGCTGTTTTGGTGTTGTTGGTGATGCTACTTTTTGTGCTGTTTAGTGTTC
** * *
51358613 TTTTGATGCTGTTTTGGTGTTGTTTTTG-TGCTACTTTTTGTGGTGTTTTATTGTTC
1 TTTTGATGCTGTTTTGGTGTTGTTGGTGATGCTACTTTTTGTGCTG-TTTAGTGTTC
51358669 TTTTG
1 TTTTG
51358674 CAGCTATTTA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
55 14 0.28
56 36 0.72
ACGTcount: A:0.03, C:0.06, G:0.29, T:0.62
Consensus pattern (56 bp):
TTTTGATGCTGTTTTGGTGTTGTTGGTGATGCTACTTTTTGTGCTGTTTAGTGTTC
Found at i:51360306 original size:23 final size:23
Alignment explanation
Indices: 51360280--51360324 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
51360270 GTTATAACTT
51360280 TTTTTTATTTACCAAAATATATA
1 TTTTTTATTTACCAAAATATATA
51360303 TTTTTTATTTACCAAAATATAT
1 TTTTTTATTTACCAAAATATAT
51360325 CAAAAAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (23 bp):
TTTTTTATTTACCAAAATATATA
Found at i:51360475 original size:27 final size:27
Alignment explanation
Indices: 51360388--51360462 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
51360378 CACCAATGGG
*
51360388 ATTGGCGGCACCAAAT-GTGCCAA-AGCA
1 ATTGGCGGCACC-AATGGTGCCAATA-CT
51360415 ATTGGCGGCACCAATGGTGCCAATACT
1 ATTGGCGGCACCAATGGTGCCAATACT
51360442 ATTGGCGGCACCAATGGTGCC
1 ATTGGCGGCACCAATGGTGCC
51360463 GTATTGATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
26 3 0.07
27 41 0.91
28 1 0.02
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.19
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAATACT
Found at i:51360578 original size:11 final size:11
Alignment explanation
Indices: 51360562--51360601 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
51360552 GTTGTTGTGG
51360562 AAAAGAAGAGA
1 AAAAGAAGAGA
51360573 AAAAG-AGAGA
1 AAAAGAAGAGA
*
51360583 AAAAGAGGAGA
1 AAAAGAAGAGA
51360594 AAAAGAAG
1 AAAAGAAG
51360602 GTATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 10 0.38
11 16 0.62
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:51360717 original size:3 final size:3
Alignment explanation
Indices: 51360701--51360741 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
51360691 AAAATAATAG
* *
51360701 TAT TAGT TAG TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT T
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
51360742 GTTGTTGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:51360746 original size:3 final size:3
Alignment explanation
Indices: 51360740--51360768 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51360730 ACTATTATTA
51360740 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
51360769 AGTATTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:51361575 original size:18 final size:18
Alignment explanation
Indices: 51361552--51361589 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
51361542 GGTTGGTGGT
*
51361552 GAAGAAGAAGGTGCTGGC
1 GAAGAAGAAGGTGATGGC
51361570 GAAGAAGAAGGTGATGGC
1 GAAGAAGAAGGTGATGGC
51361588 GA
1 GA
51361590 TCATTGGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.37, C:0.08, G:0.45, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGATGGC
Found at i:51366292 original size:28 final size:24
Alignment explanation
Indices: 51366238--51366284 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
51366228 GTTTTTTTTG
*
51366238 ATATATTTTGGTAAATAAAAATAT
1 ATATATTTTGGTAAATAAAAAAAT
51366262 ATATATTTTGGTAAATAAAAAAA
1 ATATATTTTGGTAAATAAAAAAA
51366285 AACTTATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (24 bp):
ATATATTTTGGTAAATAAAAAAAT
Found at i:51367069 original size:27 final size:29
Alignment explanation
Indices: 51367018--51367078 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
51367008 AAATACCGTT
51367018 TCTT-TTCTTTTTTTTTCCTTCCTTC-CC
1 TCTTCTTCTTTTTTTTTCCTTCCTTCTCC
*
51367045 TCTTCTTCTTCTTTTTT--TTCTCTTCTCC
1 TCTTCTTCTTTTTTTTTCCTTC-CTTCTCC
51367073 T-TTCTT
1 TCTTCTT
51367079 TTTATTTCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 3 0.10
27 13 0.43
28 14 0.47
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (29 bp):
TCTTCTTCTTTTTTTTTCCTTCCTTCTCC
Found at i:51367092 original size:41 final size:40
Alignment explanation
Indices: 51367046--51367199 Score: 151
Period size: 40 Copynumber: 3.9 Consensus size: 40
51367036 TTCCTTCCCT
51367046 CTTCTTCTTCTTTTTTTTCTCTTCTCCTTTCTTTTTATTTC
1 CTTCTTCTTCTTTTTTTTCTCTTCTCCTTTCTTTTT-TTTC
51367087 CTTC-T-TTCTTTCTTTTT-TCTTCTCCTTTCCTTTTCTTCTTC
1 CTTCTTCTTCTTT-TTTTTCTCTTCTCCTTT-CTTTT-TT-TTC
* * *
51367128 TTTCTTTCTT-TCTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTC-TTCTTCTTTTTTTTCTCTTCTCCTTT-CTTTTTTTTC
* *
51367169 CTTCTTTTTC-TTTCTTTC-C-TCTCCTTTCTTT
1 CTTCTTCTTCTTTTTTTTCTCTTCTCCTTTCTTT
51367200 CTTTCCCTCT
Statistics
Matches: 97, Mismatches: 7, Indels: 22
0.77 0.06 0.17
Matches are distributed among these distances:
37 4 0.04
38 8 0.08
39 18 0.19
40 22 0.23
41 17 0.18
42 6 0.06
43 20 0.21
44 2 0.02
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (40 bp):
CTTCTTCTTCTTTTTTTTCTCTTCTCCTTTCTTTTTTTTC
Found at i:51367093 original size:18 final size:18
Alignment explanation
Indices: 51367021--51367199 Score: 89
Period size: 18 Copynumber: 9.4 Consensus size: 18
51367011 TACCGTTTCT
*
51367021 TTTCTTTTTTTTTCCTTCC
1 TTTCTTTTTCTTTCCTT-C
* * *
51367040 TTCCCTCTTC-TT-CTTC
1 TTTCTTTTTCTTTCCTTC
*
51367056 TTTTTTTTCTCTTCTCCTTTC
1 TTTCTTTT-TCTT-TCC-TTC
* *
51367077 TTT-TTATTTCCTTCTTTC
1 TTTCTT-TTTCTTTCCTTC
51367095 TTTCTTTTTTCTTCTCCTTTCC
1 TTTC-TTTTTCTT-TCC-TT-C
* *
51367117 TTTTCTTCTTCTTTCTTTC
1 -TTTCTTTTTCTTTCCTTC
*
51367136 TTTCTTTTTTCTCTT-CTCC
1 TTTC-TTTTTCT-TTCCTTC
*
51367155 TTTCCTTTTCTTTCCTTC
1 TTTCTTTTTCTTTCCTTC
51367173 TTT-TTCTTTCTTTCCTCTCC
1 TTTCTT-TTTCTTTCCT-T-C
51367193 TTTCTTT
1 TTTCTTT
51367200 CTTTCCCTCT
Statistics
Matches: 121, Mismatches: 20, Indels: 37
0.68 0.11 0.21
Matches are distributed among these distances:
16 5 0.04
17 8 0.07
18 35 0.29
19 28 0.23
20 19 0.16
21 14 0.12
22 8 0.07
23 4 0.03
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTCTTTTTCTTTCCTTC
Found at i:51367095 original size:4 final size:4
Alignment explanation
Indices: 51367083--51367204 Score: 78
Period size: 4 Copynumber: 30.0 Consensus size: 4
51367073 TTTCTTTTTA
*
51367083 TTTC CTTC TTTC TTTC TTT- TTTC TTCTCC TTTCC TTT- TCTTC -TTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C TTTC T-TTC TTTC
* *
51367128 TTTC TTTC TTTC TTT- TTTC TCTTC -TCC TTTCC TTTTC TTTC CTTC -TT-
1 TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TTT-C -TTTC TTTC TTTC TTTC
*
51367175 TTTC TTTC TTTCC TCTCC TTTC TTTC TTTC
1 TTTC TTTC TTT-C T-TTC TTTC TTTC TTTC
51367205 CCTCTCCTTC
Statistics
Matches: 96, Mismatches: 7, Indels: 30
0.72 0.05 0.23
Matches are distributed among these distances:
3 16 0.17
4 57 0.59
5 16 0.17
6 7 0.07
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (4 bp):
TTTC
Found at i:51367126 original size:48 final size:43
Alignment explanation
Indices: 51367073--51367166 Score: 134
Period size: 43 Copynumber: 2.1 Consensus size: 43
51367063 TCTCTTCTCC
* *
51367073 TTTCTTTTTATTTCCTTCTTTCTTTCTTTTTTCTTCTCCTTTCCT
1 TTTCTTCTTATTTCCTTCTTTC-TT-TTTTCTCTTCTCCTTTCCT
* *
51367118 TTTCTTCTTCTTTCTTTCTTTCTTTTTTCTCTTCTCCTTTCCT
1 TTTCTTCTTATTTCCTTCTTTCTTTTTTCTCTTCTCCTTTCCT
51367161 TTTCTT
1 TTTCTT
51367167 TCCTTCTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
43 24 0.53
44 2 0.04
45 19 0.42
ACGTcount: A:0.01, C:0.28, G:0.00, T:0.71
Consensus pattern (43 bp):
TTTCTTCTTATTTCCTTCTTTCTTTTTTCTCTTCTCCTTTCCT
Found at i:51367165 original size:33 final size:32
Alignment explanation
Indices: 51367118--51367204 Score: 104
Period size: 33 Copynumber: 2.7 Consensus size: 32
51367108 CTCCTTTCCT
* *
51367118 TTTCTTCTTCTTTCTTTCTTTCTTTTT-TCTC
1 TTTCCTCTCCTTTCTTTCTTTCTTTTTCTCTC
* * *
51367149 TTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTC
1 TT-TCCTCTCC-TTTCTTTCTTTCTTTTTCTCTC
51367183 TTTCCTCTCCTTTCTTTCTTTC
1 TTTCCTCTCCTTTCTTTCTTTC
51367205 CCTCTCCTTC
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
31 2 0.04
32 16 0.35
33 23 0.50
34 5 0.11
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (32 bp):
TTTCCTCTCCTTTCTTTCTTTCTTTTTCTCTC
Found at i:51367210 original size:19 final size:19
Alignment explanation
Indices: 51367135--51367213 Score: 83
Period size: 18 Copynumber: 4.2 Consensus size: 19
51367125 TTCTTTCTTT
*
51367135 CTTTCTTT-TTTCTCTTCTC
1 CTTTCTTTCTTTC-CCTCTC
*
51367154 CTTTCCTTTTCTTTCCTTCT-
1 CTTT-C-TTTCTTTCCCTCTC
*
51367174 TTTTCTTTCTTT-CCTCTC
1 CTTTCTTTCTTTCCCTCTC
51367192 CTTTCTTTCTTTCCCTCTC
1 CTTTCTTTCTTTCCCTCTC
51367211 CTT
1 CTT
51367214 CTGGTCCCCC
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
17 4 0.08
18 18 0.35
19 14 0.27
20 4 0.08
21 8 0.15
22 4 0.08
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (19 bp):
CTTTCTTTCTTTCCCTCTC
Found at i:51367286 original size:27 final size:27
Alignment explanation
Indices: 51367248--51367344 Score: 160
Period size: 27 Copynumber: 3.6 Consensus size: 27
51367238 CCCTAATAAA
51367248 CATTGGTGCCGCCAATGGTATTGGCAC
1 CATTGGTGCCGCCAATGGTATTGGCAC
*
51367275 CATTGGTGCCGCCAATGGTAGTGGCAC
1 CATTGGTGCCGCCAATGGTATTGGCAC
51367302 CATTGGTGCCGCCAATGGCT-TTGGCAC
1 CATTGGTGCCGCCAATGG-TATTGGCAC
*
51367329 CTTTGGTGCCGCCAAT
1 CATTGGTGCCGCCAAT
51367345 CCCATTGGCG
Statistics
Matches: 66, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
27 65 0.98
28 1 0.02
ACGTcount: A:0.16, C:0.28, G:0.30, T:0.26
Consensus pattern (27 bp):
CATTGGTGCCGCCAATGGTATTGGCAC
Found at i:51368134 original size:25 final size:26
Alignment explanation
Indices: 51368090--51368141 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
51368080 ATTTTATCTA
*
51368090 TTTATATATATTATAAATTTCTAATT
1 TTTATATATATTATAAATTTATAATT
*
51368116 TTTATAT-TTTTATAAATTTATAATT
1 TTTATATATATTATAAATTTATAATT
51368141 T
1 T
51368142 GTTTTAGATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (26 bp):
TTTATATATATTATAAATTTATAATT
Found at i:51368395 original size:11 final size:10
Alignment explanation
Indices: 51368364--51368426 Score: 58
Period size: 10 Copynumber: 6.2 Consensus size: 10
51368354 TTTAATAAAA
51368364 TTTAT-ATTAT
1 TTTATAATT-T
51368374 TTT-TAATTTT
1 TTTATAA-TTT
*
51368384 TTTATAAATT
1 TTTATAATTT
51368394 TTTATAATTTT
1 TTTATAA-TTT
*
51368405 TTTATGATTT
1 TTTATAATTT
*
51368415 TTAATAATTT
1 TTTATAATTT
51368425 TT
1 TT
51368427 AAATTTTAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
9 1 0.02
10 30 0.68
11 13 0.30
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.70
Consensus pattern (10 bp):
TTTATAATTT
Found at i:51368403 original size:21 final size:20
Alignment explanation
Indices: 51368364--51368426 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 20
51368354 TTTAATAAAA
*
51368364 TTTAT-ATTATTTTTAATTTT
1 TTTATAATT-TTTATAATTTT
51368384 TTTATAAATTTTTATAATTTT
1 TTTAT-AATTTTTATAATTTT
*
51368405 TTTATGATTTTTAATAATTTT
1 TTTATAATTTTT-ATAATTTT
51368426 T
1 T
51368427 AAATTTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
20 11 0.29
21 24 0.63
22 3 0.08
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTATAATTTTTATAATTTT
Found at i:51368415 original size:9 final size:9
Alignment explanation
Indices: 51368382--51368433 Score: 52
Period size: 10 Copynumber: 5.4 Consensus size: 9
51368372 ATTTTTAATT
51368382 TTTTTATAAA
1 TTTTTAT-AA
51368392 TTTTTATAA
1 TTTTTATAA
*
51368401 TTTTTTTATGA
1 --TTTTTATAA
51368412 TTTTTAATAA
1 TTTTT-ATAA
51368422 TTTTTA-AA
1 TTTTTATAA
51368430 TTTT
1 TTTT
51368434 AAAAAGACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
8 6 0.16
9 8 0.22
10 15 0.41
11 8 0.22
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:51368427 original size:10 final size:10
Alignment explanation
Indices: 51368353--51368428 Score: 50
Period size: 10 Copynumber: 7.6 Consensus size: 10
51368343 TATCGTTATC
*
51368353 TTTTAATAAA
1 TTTTAATAAT
* *
51368363 ATTTATATTAT
1 TTTTA-ATAAT
51368374 TTTTAAT--T
1 TTTTAATAAT
*
51368382 TTTTTATAAAT
1 TTTTAAT-AAT
51368393 TTTT-ATAATT
1 TTTTAATAA-T
* *
51368403 TTTTTATGAT
1 TTTTAATAAT
51368413 TTTTAATAAT
1 TTTTAATAAT
51368423 TTTTAA
1 TTTTAA
51368429 ATTTTAAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
8 7 0.13
9 2 0.04
10 28 0.54
11 15 0.29
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:51371803 original size:7 final size:7
Alignment explanation
Indices: 51371791--51371826 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
51371781 GACAGAACTA
51371791 ACAATTT
1 ACAATTT
51371798 ACAATTT
1 ACAATTT
51371805 ACAATTT
1 ACAATTT
*
51371812 ACACTTT
1 ACAATTT
*
51371819 ACACTTT
1 ACAATTT
51371826 A
1 A
51371827 GTCCTTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (7 bp):
ACAATTT
Found at i:51377253 original size:15 final size:16
Alignment explanation
Indices: 51377220--51377255 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
51377210 TATTTTAGCT
*
51377220 AAATTTAAAATTATAA
1 AAATTTAAATTTATAA
51377236 AAATTTAAATTTATAA
1 AAATTTAAATTTATAA
51377252 AAAT
1 AAAT
51377256 AAAATTTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AAATTTAAATTTATAA
Found at i:51377260 original size:15 final size:16
Alignment explanation
Indices: 51377224--51377263 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
51377214 TTAGCTAAAT
51377224 TTAAAA-TTATAAAAA
1 TTAAAATTTATAAAAA
*
51377239 TTTAAATTTATAAAAA
1 TTAAAATTTATAAAAA
51377255 -TAAAATTTA
1 TTAAAATTTA
51377264 ACATAGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
TTAAAATTTATAAAAA
Found at i:51377306 original size:8 final size:8
Alignment explanation
Indices: 51377293--51377318 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
51377283 ATTAGCAAAT
51377293 AATATAAA
1 AATATAAA
51377301 AATATAAA
1 AATATAAA
51377309 AATATAAA
1 AATATAAA
51377317 AA
1 AA
51377319 ATTCATAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATATAAA
Done.