Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 208 of 211
Found at i:64488999 original size:177 final size:174
Alignment explanation
Indices: 64488646--64489017 Score: 412
Period size: 177 Copynumber: 2.1 Consensus size: 174
64488636 TTAAATTTTT
* *
64488646 TTTTTTTATAAAAATTATAATTTCTTGAGTAATGACGTGGTACAACATGAACCAAAACTCAGAAA
1 TTTTTTTATAAAAATTATAATTTCTTCAGTAATGACATGGTACAACATGAACCAAAACTCAGAAA
* * *****
64488711 AGTTGACAAATTTCAAGATGGATGTGTAGTCTTGAAACTTGACATTTTTTTTTCAATTTTGATCC
66 AGTTGACAAATTTCAAGATGAACGTGTAGTCTTGAAACTTGACAAAAAATTTTCAATTTTGATCC
* * *
64488776 CTATGATGACATGACACTCTAATATTGTACCATGTCATCACTTAA
131 CTATGATGACATGACACCCTAAGATTGTA-CACGTCATCACTTAA
* * **
64488821 TTTTTTTCAATAAAAACTATAATTTCTTCAGTAATGACATGGTACAATATGGGCCAAAACT-AGG
1 TTTTTTT--ATAAAAATTATAATTTCTTCAGTAATGACATGGTACAACATGAACCAAAACTCA-G
* * * *
64488885 ACAAGTTGAGAAGTTTCGAGACT-AACGTGTAGTCTTGAAACTTGGTA-AAAAAATTTT-AATTT
63 AAAAGTTGACAAATTTCAAGA-TGAACGTGTAGTCTTGAAACTT-G-ACAAAAAATTTTCAATTT
* * **
64488947 TGATCCCTATGATGATATGACACCCTAAGACTATGT-CACGTTATTTCTTAA
125 TGATCCCTATGATGACATGACACCCTAAGA-T-TGTACACGTCATCACTTAA
64488998 TTTTTTTATAAAAATTATAA
1 TTTTTTTATAAAAATTATAA
64489018 ATATAAACCA
Statistics
Matches: 164, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
175 19 0.12
176 1 0.01
177 132 0.80
178 8 0.05
179 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (174 bp):
TTTTTTTATAAAAATTATAATTTCTTCAGTAATGACATGGTACAACATGAACCAAAACTCAGAAA
AGTTGACAAATTTCAAGATGAACGTGTAGTCTTGAAACTTGACAAAAAATTTTCAATTTTGATCC
CTATGATGACATGACACCCTAAGATTGTACACGTCATCACTTAA
Found at i:64490455 original size:30 final size:31
Alignment explanation
Indices: 64490419--64490502 Score: 93
Period size: 30 Copynumber: 2.8 Consensus size: 31
64490409 AATAGTCTAT
*
64490419 ATTTTTATAATTTTTAAAAATTTAAATTA-A
1 ATTTTTATAATTTTTAAAAATTTAAAGTACA
* *
64490449 ATTTTTATCATTTTTAAAAA-CTAAAGTACA
1 ATTTTTATAATTTTTAAAAATTTAAAGTACA
* *
64490479 A-TTTTATTATTATTTAAAATTTTA
1 ATTTTTATAATT-TTTAAAAATTTA
64490503 TCAATTATAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 15 0.33
30 28 0.62
31 2 0.04
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.52
Consensus pattern (31 bp):
ATTTTTATAATTTTTAAAAATTTAAAGTACA
Found at i:64499022 original size:51 final size:51
Alignment explanation
Indices: 64498937--64499087 Score: 194
Period size: 51 Copynumber: 3.0 Consensus size: 51
64498927 ATTCAGTCTT
* * * *
64498937 AACGCTAAGGAAATAAGATTCGCTGCCTTCAGCTTTAATCTGCTCCGCTGC
1 AACGCTAAGGAAATAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACTAC
* * * * *
64498988 AACGCTAGGGAAACAAGATTTGCTACCTTTAGCTTTAATCTGTTCCACTAT
1 AACGCTAAGGAAATAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACTAC
* * *
64499039 AACGCCAAGGAGATAGGATTCGCTACCTTTAGCTTTAATCTGCTCCACT
1 AACGCTAAGGAAATAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACT
64499088 TCAGCTTTAA
Statistics
Matches: 84, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 84 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (51 bp):
AACGCTAAGGAAATAAGATTCGCTACCTTTAGCTTTAATCTGCTCCACTAC
Found at i:64499106 original size:21 final size:21
Alignment explanation
Indices: 64499069--64499108 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64499059 CGCTACCTTT
*
64499069 AGCTTTAATCTGCTCCACTTC
1 AGCTTTAATCTACTCCACTTC
*
64499090 AGCTTTAATCTATTCCACT
1 AGCTTTAATCTACTCCACT
64499109 GTAATGCCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.30, G:0.07, T:0.40
Consensus pattern (21 bp):
AGCTTTAATCTACTCCACTTC
Found at i:64503922 original size:29 final size:29
Alignment explanation
Indices: 64503889--64503948 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
64503879 GATTTTAACC
*
64503889 ATAGGATCTTTTGGTGGACTTTAATGCAT
1 ATAGGATCTTTTGGTAGACTTTAATGCAT
64503918 ATAGGATCTTTTGGTAGACTTTAATGCAT
1 ATAGGATCTTTTGGTAGACTTTAATGCAT
64503947 AT
1 AT
64503949 GATATAATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.42
Consensus pattern (29 bp):
ATAGGATCTTTTGGTAGACTTTAATGCAT
Found at i:64507921 original size:3 final size:3
Alignment explanation
Indices: 64507915--64507961 Score: 85
Period size: 3 Copynumber: 15.7 Consensus size: 3
64507905 GATGAAAATG
*
64507915 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ACA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
64507962 GGTGATAATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:64531667 original size:20 final size:22
Alignment explanation
Indices: 64531638--64531683 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
64531628 AAAAAAAGTG
64531638 TTAAAGTTAGAT-TTT-GTTAA
1 TTAAAGTTAGATATTTAGTTAA
* *
64531658 TTAAATTTAGATATTTATTTAA
1 TTAAAGTTAGATATTTAGTTAA
64531680 TTAA
1 TTAA
64531684 CGAAATCGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 11 0.50
21 3 0.14
22 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (22 bp):
TTAAAGTTAGATATTTAGTTAA
Found at i:64534573 original size:4 final size:4
Alignment explanation
Indices: 64534556--64534594 Score: 51
Period size: 4 Copynumber: 9.0 Consensus size: 4
64534546 ACCTAAATCA
64534556 AATT AATTT AAATT AATT AATT AATT AATT AATTT AATT
1 AATT AA-TT -AATT AATT AATT AATT AATT AA-TT AATT
64534595 TTATCCGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 22 0.69
5 8 0.25
6 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (4 bp):
AATT
Found at i:64535808 original size:24 final size:24
Alignment explanation
Indices: 64535769--64535815 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
64535759 AAAAAAAGAG
64535769 TATATTTTTGTAATTAAATTTAAATA
1 TATATTTTTGTAATT--ATTTAAATA
64535795 TATATTTTT-T-ATTATTTAAAT
1 TATATTTTTGTAATTATTTAAAT
64535816 TAAAATTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 8 0.38
24 3 0.14
25 1 0.05
26 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (24 bp):
TATATTTTTGTAATTATTTAAATA
Found at i:64540478 original size:59 final size:58
Alignment explanation
Indices: 64540298--64540581 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
64540288 ATGATAAATT
* ** * *
64540298 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
64540357 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
64540418 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
64540477 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
64540539 T
58 C
*
64540540 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
64540582 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:64540505 original size:120 final size:122
Alignment explanation
Indices: 64540291--64540581 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
64540281 TAGTATGATG
* **
64540291 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
64540356 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
64540412 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
64540475 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
64540533 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
64540582 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:64540560 original size:18 final size:19
Alignment explanation
Indices: 64540525--64540561 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
64540515 ATTATTAAGA
64540525 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
64540544 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
64540562 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:64540791 original size:44 final size:45
Alignment explanation
Indices: 64540726--64540816 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
64540716 ACCTCTATTC
* * *
64540726 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
64540770 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
64540815 CA
1 CA
64540817 CTTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:64540831 original size:17 final size:16
Alignment explanation
Indices: 64540797--64540849 Score: 88
Period size: 16 Copynumber: 3.2 Consensus size: 16
64540787 GATTAGCTAT
64540797 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
64540813 TACACTTCTAATCCCAA
1 TACACCTCTAAT-CCAA
64540830 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
64540846 TACA
1 TACA
64540850 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
16 19 0.56
17 15 0.44
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:64559838 original size:36 final size:36
Alignment explanation
Indices: 64559772--64559840 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
64559762 TAGAAAATAT
* * *
64559772 AAAAGATATAAATTACTAATAATTTAAAAATTAAAG
1 AAAAGATAAAAAATAATAATAATTTAAAAATTAAAG
*
64559808 AAAAGATAAAAAATAATAA-AATTTGGAAAATTA
1 AAAAGATAAAAAATAATAATAATTT-AAAAATTA
64559841 TATTAAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 5 0.18
36 23 0.82
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.28
Consensus pattern (36 bp):
AAAAGATAAAAAATAATAATAATTTAAAAATTAAAG
Found at i:64563346 original size:15 final size:15
Alignment explanation
Indices: 64563310--64563348 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
64563300 TTTTCCCTCA
*
64563310 TCTTTTATTCAAACT
1 TCTTTTATTTAAACT
*
64563325 T-TTTTATTTAAATT
1 TCTTTTATTTAAACT
64563339 TCTTTTATTT
1 TCTTTTATTT
64563349 TTTCCTCGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.23, C:0.10, G:0.00, T:0.67
Consensus pattern (15 bp):
TCTTTTATTTAAACT
Found at i:64578897 original size:23 final size:21
Alignment explanation
Indices: 64578871--64578924 Score: 54
Period size: 23 Copynumber: 2.5 Consensus size: 21
64578861 ATTTGGTTGG
*
64578871 ACTTGAATATCATTTATTTAAGA
1 ACTTGAATATCACTTATTT--GA
* * *
64578894 ACTTAAATCTGACTTATTTGA
1 ACTTGAATATCACTTATTTGA
64578915 ACTTGAATAT
1 ACTTGAATAT
64578925 GAATATATAC
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 10 0.40
23 15 0.60
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (21 bp):
ACTTGAATATCACTTATTTGA
Found at i:64581987 original size:20 final size:20
Alignment explanation
Indices: 64581962--64581999 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
64581952 GAAAAACCGA
*
64581962 ATTAAATTAATTATTTTACT
1 ATTAAATTAATTAATTTACT
*
64581982 ATTAAATTGATTAATTTA
1 ATTAAATTAATTAATTTA
64582000 GTATATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (20 bp):
ATTAAATTAATTAATTTACT
Found at i:64583129 original size:17 final size:17
Alignment explanation
Indices: 64583107--64583142 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
64583097 TTTCTTACGA
*
64583107 TTCAATCCTCAATCAAT
1 TTCAATCATCAATCAAT
*
64583124 TTCAATCATCAATCTAT
1 TTCAATCATCAATCAAT
64583141 TT
1 TT
64583143 TTAAATCGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (17 bp):
TTCAATCATCAATCAAT
Found at i:64590780 original size:12 final size:12
Alignment explanation
Indices: 64590763--64590798 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
64590753 TTTCAGGCAT
64590763 TGGTTCCGGTTC
1 TGGTTCCGGTTC
* *
64590775 TGGTTCTGATTC
1 TGGTTCCGGTTC
64590787 TGGTTCCGGTTC
1 TGGTTCCGGTTC
64590799 CTTCTTAACT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.03, C:0.22, G:0.31, T:0.44
Consensus pattern (12 bp):
TGGTTCCGGTTC
Found at i:64592359 original size:16 final size:16
Alignment explanation
Indices: 64592323--64592369 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
64592313 ACCTTATAAA
64592323 ATTAAATTTTATTATT
1 ATTAAATTTTATTATT
*
64592339 -GTAAATATTTATT-TT
1 ATTAAAT-TTTATTATT
*
64592354 ATTAAATTATATTATT
1 ATTAAATTTTATTATT
64592370 GCCTTTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTAAATTTTATTATT
Found at i:64593340 original size:3 final size:3
Alignment explanation
Indices: 64593332--64593360 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
64593322 GCAGCTTCGG
64593332 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
64593361 ACAACAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:64607267 original size:21 final size:20
Alignment explanation
Indices: 64607220--64607268 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
64607210 AAAACCTGTT
*
64607220 ATTTTTACTGTTGTTTTTCC
1 ATTTTTACTGTTGTTTTCCC
64607240 ATATTTTACTGTTGTTTTCCC
1 AT-TTTTACTGTTGTTTTCCC
64607261 ACTTTTTA
1 A-TTTTTA
64607269 TCCTTGTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 23 0.88
22 1 0.04
ACGTcount: A:0.14, C:0.16, G:0.08, T:0.61
Consensus pattern (20 bp):
ATTTTTACTGTTGTTTTCCC
Found at i:64630354 original size:27 final size:27
Alignment explanation
Indices: 64630320--64630372 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
64630310 AAAAAATAAC
64630320 CAAAATATTATAACTTTTTTTATTTAT
1 CAAAATATTATAACTTTTTTTATTTAT
*
64630347 CAAAATATTATAATTTTTTTTATTTA
1 CAAAATATTATAACTTTTTTTATTTA
64630373 CTAAACTATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.57
Consensus pattern (27 bp):
CAAAATATTATAACTTTTTTTATTTAT
Found at i:64630541 original size:18 final size:18
Alignment explanation
Indices: 64630518--64630581 Score: 92
Period size: 18 Copynumber: 3.5 Consensus size: 18
64630508 TAAAATAGAG
64630518 TTATTAAATGAGAATAGT
1 TTATTAAATGAGAATAGT
* * *
64630536 TTATTAAATTAAAATAGAG
1 TTATTAAATGAGAATAG-T
64630555 TTATTAAATGAGAATAGT
1 TTATTAAATGAGAATAGT
64630573 TTATTAAAT
1 TTATTAAAT
64630582 TAAAATAGAG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 24 0.62
19 15 0.38
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (18 bp):
TTATTAAATGAGAATAGT
Found at i:64630544 original size:37 final size:37
Alignment explanation
Indices: 64630502--64630597 Score: 192
Period size: 37 Copynumber: 2.6 Consensus size: 37
64630492 GCTTAATTTT
64630502 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
64630539 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
64630576 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
64630598 CTTAATTAGA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
Found at i:64630602 original size:18 final size:19
Alignment explanation
Indices: 64630502--64630597 Score: 124
Period size: 19 Copynumber: 5.2 Consensus size: 19
64630492 GCTTAATTTT
64630502 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
64630521 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
64630539 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
64630558 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
64630576 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
64630595 TTA
1 TTA
64630598 CTTAATTAGA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
18 30 0.48
19 33 0.52
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:64631240 original size:19 final size:20
Alignment explanation
Indices: 64631216--64631267 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
64631206 AAATTTGAAT
64631216 TAGTTTATACTTT-T-TAAAA
1 TAGTTT-TACTTTATGTAAAA
64631235 TAGTTTTACTTTATGTAAAA
1 TAGTTTTACTTTATGTAAAA
64631255 TA-TATTTACTTTA
1 TAGT-TTTACTTTA
64631268 ATAATAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.20
19 8 0.27
20 16 0.53
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (20 bp):
TAGTTTTACTTTATGTAAAA
Found at i:64631278 original size:22 final size:20
Alignment explanation
Indices: 64631216--64631278 Score: 60
Period size: 20 Copynumber: 3.1 Consensus size: 20
64631206 AAATTTGAAT
64631216 TAGTTTATACTTT-T-TAAAA
1 TAGTTT-TACTTTATATAAAA
*
64631235 TAGTTTTACTTTATGTAAAA
1 TAGTTTTACTTTATATAAAA
64631255 TA-TATTTACTTTAATAATAAAA
1 TAGT-TTTACTTT-AT-ATAAAA
64631277 TA
1 TA
64631279 AAGGGCTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
18 6 0.16
19 8 0.21
20 15 0.39
21 2 0.05
22 7 0.18
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (20 bp):
TAGTTTTACTTTATATAAAA
Found at i:64631621 original size:27 final size:27
Alignment explanation
Indices: 64631534--64631612 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
64631524 CATTTTAGTC
64631534 CTTTGGCACCATTGGTGCCGCCAATCT
1 CTTTGGCACCATTGGTGCCGCCAATCT
*
64631561 CTTTGGCACCATTGATGCCGCCAATCT
1 CTTTGGCACCATTGGTGCCGCCAATCT
* *
64631588 CTTTGGCACCTTTGGTGCCTCCAAT
1 CTTTGGCACCATTGGTGCCGCCAAT
64631613 GTGATTGGCC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.15, C:0.33, G:0.20, T:0.32
Consensus pattern (27 bp):
CTTTGGCACCATTGGTGCCGCCAATCT
Found at i:64631729 original size:26 final size:27
Alignment explanation
Indices: 64631678--64631740 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
64631668 TTTTTTAGGT
64631678 ATATTTTGGTAAATAAAAAAATTTATA
1 ATATTTTGGTAAATAAAAAAATTTATA
64631705 ATATTTTGGTAAATAAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAATTTATA
64631731 ATATTTTGGT
1 ATATTTTGGT
64631741 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 15 0.42
27 21 0.58
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (27 bp):
ATATTTTGGTAAATAAAAAAATTTATA
Found at i:64635991 original size:25 final size:27
Alignment explanation
Indices: 64635963--64636020 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 27
64635953 CTTGTACTTT
64635963 TTAACTCTAAGC-T-ATACTTGCTAAA
1 TTAACTCTAAGCATAATACTTGCTAAA
64635988 TTAACTCTAAGCAAGTAATACTTGCTAAA
1 TTAACTCTAAGC-A-TAATACTTGCTAAA
64636017 TTAA
1 TTAA
64636021 TGTCCATCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 12 0.41
28 1 0.03
29 16 0.55
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (27 bp):
TTAACTCTAAGCATAATACTTGCTAAA
Found at i:64641782 original size:18 final size:17
Alignment explanation
Indices: 64641743--64641776 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
64641733 TTAATGTAAG
64641743 TAATA-TTTAAAATAAA
1 TAATATTTTAAAATAAA
64641759 TAATATTTTATAAATAAA
1 TAATATTTTA-AAATAAA
64641777 ATATATGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATATTTTAAAATAAA
Found at i:64661708 original size:14 final size:14
Alignment explanation
Indices: 64661689--64661719 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
64661679 TGCTACCATT
64661689 TTACTATTATGTTG
1 TTACTATTATGTTG
*
64661703 TTACTATTTTGTTG
1 TTACTATTATGTTG
64661717 TTA
1 TTA
64661720 TAGTTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:64664324 original size:15 final size:15
Alignment explanation
Indices: 64664288--64664364 Score: 50
Period size: 15 Copynumber: 5.1 Consensus size: 15
64664278 ACCACCGGTT
* *
64664288 ACAGTCCCTCCAGTC
1 ACAGTCCCACCAGTG
*
64664303 ACTGTCCCACCAGTG
1 ACAGTCCCACCAGTG
* *
64664318 ACAGTCCCTCCAATAG
1 ACAGTCCCACCAGT-G
** *
64664334 TA-A-AACCACCAGTT
1 -ACAGTCCCACCAGTG
64664348 ACAGTCCCACCAGTG
1 ACAGTCCCACCAGTG
64664363 AC
1 AC
64664365 TGTTCCTCCT
Statistics
Matches: 44, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
13 1 0.02
14 1 0.02
15 39 0.89
16 2 0.05
17 1 0.02
ACGTcount: A:0.29, C:0.39, G:0.14, T:0.18
Consensus pattern (15 bp):
ACAGTCCCACCAGTG
Found at i:64664398 original size:72 final size:72
Alignment explanation
Indices: 64664309--64664517 Score: 260
Period size: 72 Copynumber: 2.9 Consensus size: 72
64664299 AGTCACTGTC
* *
64664309 CCACCAG-TGACAGTCCCTCCAATAGTAAAACCA-CCAGTTACAGTCCCACCAGTGACTGTTCCT
1 CCACCAGTTGA-ACTCCCTCCAATAGCAAAACCACCCA-TTACAGTCCCACCAGTGACTGTTCCT
*
64664372 CCTGTGAAG
64 CCTGTAAAG
* *
64664381 CCACCAGTTGAACTCCCTCCGATTGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
1 CCACCAGTTGAACTCCCTCCAATAGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
64664446 TGTAAAG
66 TGTAAAG
* * * * * * * * *
64664453 CCACCTGTTGATCTCCCTCCAATTGCTAAGCCACCCATTACGGTTCCACCAGTGACCGTCCCTCC
1 CCACCAGTTGAACTCCCTCCAATAGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
64664518 AGTGACTGTT
Statistics
Matches: 121, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
72 115 0.95
73 6 0.05
ACGTcount: A:0.24, C:0.38, G:0.15, T:0.22
Consensus pattern (72 bp):
CCACCAGTTGAACTCCCTCCAATAGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCC
TGTAAAG
Found at i:64664557 original size:87 final size:87
Alignment explanation
Indices: 64664423--64664609 Score: 320
Period size: 87 Copynumber: 2.1 Consensus size: 87
64664413 ACCCATTACA
* *
64664423 GTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCTAAGCCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACC
*
64664488 CATTACGGTTCCACCAGTGACC
66 CATTACAGTTCCACCAGTGACC
64664510 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACC
*
64664575 CATTACAGTTCCACCAGTGACT
66 CATTACAGTTCCACCAGTGACC
* *
64664597 GTTCCTCCTGTGA
1 GTCCCTCCAGTGA
64664610 ATCCACCTGT
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 94 1.00
ACGTcount: A:0.20, C:0.37, G:0.16, T:0.27
Consensus pattern (87 bp):
GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACC
CATTACAGTTCCACCAGTGACC
Found at i:64664628 original size:159 final size:159
Alignment explanation
Indices: 64664339--64664631 Score: 487
Period size: 159 Copynumber: 1.8 Consensus size: 159
64664329 AATAGTAAAA
* * *
64664339 CCACCAGTTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAACTCCCTCCGAT
1 CCACCAGTGACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAACTCCCTCCAAT
64664404 TGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCC
66 TGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCC
64664469 CTCCAATTGCTAAGCCACCCATTACGGTT
131 CTCCAATTGCTAAGCCACCCATTACGGTT
* * * *
64664498 CCACCAGTGACCGTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAAT
1 CCACCAGTGACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAACTCCCTCCAAT
* * * *
64664563 TGCAAAGCCACCCATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAATCCACCTGTTGATCTCC
66 TGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCC
64664628 CTCC
131 CTCC
64664632 GGTGACTGTT
Statistics
Matches: 123, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
159 123 1.00
ACGTcount: A:0.22, C:0.38, G:0.15, T:0.26
Consensus pattern (159 bp):
CCACCAGTGACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAACTCCCTCCAAT
TGCAAAACCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCC
CTCCAATTGCTAAGCCACCCATTACGGTT
Found at i:64664637 original size:42 final size:42
Alignment explanation
Indices: 64664591--64664673 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
64664581 AGTTCCACCA
* * *
64664591 GTGACTGTTCCTCCTGTGAATCCACCTGTTGATCTCCCTCCG
1 GTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCG
64664633 GTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCC
1 GTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCC
64664674 AATTGCAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.13, C:0.36, G:0.20, T:0.30
Consensus pattern (42 bp):
GTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCG
Found at i:64664646 original size:114 final size:114
Alignment explanation
Indices: 64664498--64664742 Score: 402
Period size: 114 Copynumber: 2.1 Consensus size: 114
64664488 CATTACGGTT
* *
64664498 CCACCAG-TGACCGTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAA
1 CCACCAGTTGACC-TCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAA
* *
64664562 TTGCAAAGCCACCCATTACAGTTCCACCAGTGACTGTTCCTCCTGTGAAT
65 TTGCAAAGCCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAG
* * * *
64664612 CCACCTGTTGATCTCCCTCCGGTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAAT
1 CCACCAGTTGACCTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAAT
64664677 TGCAAAGCCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAG
66 TGCAAAGCCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAG
64664726 CCACCAGTTGACCTCCC
1 CCACCAGTTGACCTCCC
64664743 CCCAATTGCA
Statistics
Matches: 120, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
114 116 0.97
115 4 0.03
ACGTcount: A:0.20, C:0.38, G:0.17, T:0.25
Consensus pattern (114 bp):
CCACCAGTTGACCTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGAGCTCCCTCCAAT
TGCAAAGCCACCCATTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAG
Found at i:64664688 original size:72 final size:71
Alignment explanation
Indices: 64664633--64664781 Score: 226
Period size: 72 Copynumber: 2.1 Consensus size: 71
64664623 TCTCCCTCCG
* *
64664633 GTGACTGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCCATTACAGT
1 GTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCCCCAATTGCAAAGCCACCCATTACA-T
64664698 CCCACCA
65 CCCACCA
* * *
64664705 GTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCCCCAATTGCAAAACCGCCCATCACAGT
1 GTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCCCCAATTGCAAAGCCACCCATTACA-T
*
64664770 CCCTCCA
65 CCCACCA
64664777 GTGAC
1 GTGAC
64664782 CCTCCCAGTC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.23, C:0.39, G:0.17, T:0.21
Consensus pattern (71 bp):
GTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCCCCAATTGCAAAGCCACCCATTACATC
CCACCA
Found at i:64664809 original size:15 final size:15
Alignment explanation
Indices: 64664789--64664826 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
64664779 GACCCTCCCA
*
64664789 GTCCCTCCAGTTACT
1 GTCCCTCCAGTGACT
64664804 GTCCCTCCAGTGACT
1 GTCCCTCCAGTGACT
*
64664819 GTTCCTCC
1 GTCCCTCC
64664827 TGTAAAGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.11, C:0.42, G:0.16, T:0.32
Consensus pattern (15 bp):
GTCCCTCCAGTGACT
Found at i:64664838 original size:108 final size:108
Alignment explanation
Indices: 64664691--64664889 Score: 344
Period size: 108 Copynumber: 1.8 Consensus size: 108
64664681 AAGCCACCCA
*
64664691 TTACAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCCCCAATTGCAAAA
1 TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCCCCAATTGCAAAA
* *
64664756 CCGCCCATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAG
66 CCACCCATCACAGTCCCACCAGTGACCCTCCCAGTCCCTCCAG
* * *
64664799 TTACTGTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAA
1 TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCCCCAATTGCAAAA
64664864 CCACCCATCACAGTCCCACCAGTGAC
66 CCACCCATCACAGTCCCACCAGTGAC
64664890 TGTTCCTCCT
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
108 85 1.00
ACGTcount: A:0.23, C:0.42, G:0.14, T:0.22
Consensus pattern (108 bp):
TTACAGTCCCACCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCCCCAATTGCAAAA
CCACCCATCACAGTCCCACCAGTGACCCTCCCAGTCCCTCCAG
Found at i:64664854 original size:180 final size:180
Alignment explanation
Indices: 64664510--64664991 Score: 671
Period size: 180 Copynumber: 2.6 Consensus size: 180
64664500 ACCAGTGACC
* * * * *
64664510 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCTGTTGATCTCCCTCCAATTGCAAAGCCACC
1 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
* * * * * * * * *
64664575 CATTACAGTTCCACCAGTGACTGTTCCT-CCTGTGAATCCACCTGTTGA-TCTCCCTCCGGTGAC
66 CATCACAGTCCCTCCAGTGAC----CCTCCCAGT---CCCTCCAGTT-ACTGTCCCTCCAGTGAC
* * * *
64664638 TGTTCCTCCTGTGAAGCCACCAGTTGAGCTCCCTCCAATTGCAAAGCCACCCATTACA
123 TGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCACA
* *
64664696 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCCCCAATTGCAAAACCGCC
1 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
64664761 CATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCTCCAGTGACTGTTCCTC
66 CATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCTCCAGTGACTGTTCCTC
64664826 CTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCACA
131 CTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCACA
64664876 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
* * *
64664941 CATCACAGTCCCTCCGGTGACCGTCCCAGTCCCTCCAGTTACTGTTCCTCC
66 CATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCTCC
64664992 CGTAAAGCCA
Statistics
Matches: 269, Mismatches: 25, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
179 1 0.00
180 185 0.69
182 3 0.01
183 4 0.01
186 76 0.28
ACGTcount: A:0.21, C:0.40, G:0.15, T:0.24
Consensus pattern (180 bp):
GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
CATCACAGTCCCTCCAGTGACCCTCCCAGTCCCTCCAGTTACTGTCCCTCCAGTGACTGTTCCTC
CTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACCCATCACA
Found at i:64664890 original size:72 final size:72
Alignment explanation
Indices: 64664804--64664961 Score: 289
Period size: 72 Copynumber: 2.2 Consensus size: 72
64664794 TCCAGTTACT
64664804 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
64664869 CATCACA
66 CATCACA
* *
64664876 GTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
1 GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
64664941 CATCACA
66 CATCACA
*
64664948 GTCCCTCCGGTGAC
1 GTCCCTCCAGTGAC
64664962 CGTCCCAGTC
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 82 1.00
ACGTcount: A:0.23, C:0.41, G:0.15, T:0.22
Consensus pattern (72 bp):
GTCCCTCCAGTGACTGTTCCTCCTGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCACC
CATCACA
Found at i:64664988 original size:93 final size:93
Alignment explanation
Indices: 64664874--64665096 Score: 383
Period size: 93 Copynumber: 2.4 Consensus size: 93
64664864 CCACCCATCA
64664874 CAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCA
1 CAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCA
* *
64664939 CCCATCACAGTCCCTCCGGTGACCGTCC
66 CCCATCACAGTCCCACCAGTGACCGTCC
* * * *
64664967 CAGTCCCTCCAGTTACTGTTCCTCCCGTAAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCA
1 CAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCA
64665032 CCCATCACAGTCCCACCAGTGACCGTCC
66 CCCATCACAGTCCCACCAGTGACCGTCC
*
64665060 CAGTCCCACCAGTGACTGTTCCTCCTGTGAAACCACC
1 CAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACC
64665097 TATCAACCTC
Statistics
Matches: 119, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 119 1.00
ACGTcount: A:0.22, C:0.42, G:0.15, T:0.21
Consensus pattern (93 bp):
CAGTCCCACCAGTGACTGTTCCTCCTGTGAAGCCACCAGTTGACCTCCCTCCAATTGCAAAACCA
CCCATCACAGTCCCACCAGTGACCGTCC
Found at i:64693762 original size:19 final size:20
Alignment explanation
Indices: 64693727--64693765 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
64693717 ATTTTGATAC
64693727 AATTTATAATGTTATTCATT
1 AATTTATAATGTTATTCATT
64693747 AATTT-TAAT-TTGATTCATT
1 AATTTATAATGTT-ATTCATT
64693766 TATATACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 11 0.61
20 5 0.28
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (20 bp):
AATTTATAATGTTATTCATT
Found at i:64702805 original size:18 final size:18
Alignment explanation
Indices: 64702782--64702817 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
64702772 TGATCAATGG
64702782 TTTTGAGTTCATTTTCTA
1 TTTTGAGTTCATTTTCTA
64702800 TTTTGAGTTCATTTTCTA
1 TTTTGAGTTCATTTTCTA
64702818 AAGTTTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.11, T:0.61
Consensus pattern (18 bp):
TTTTGAGTTCATTTTCTA
Found at i:64708595 original size:12 final size:12
Alignment explanation
Indices: 64708578--64708603 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64708568 TACATATATG
64708578 TACACACATACA
1 TACACACATACA
64708590 TACACACATACA
1 TACACACATACA
64708602 TA
1 TA
64708604 TAGCTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (12 bp):
TACACACATACA
Found at i:64715409 original size:18 final size:17
Alignment explanation
Indices: 64715382--64715415 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
64715372 ACAACTGATC
*
64715382 TCAAATTTCAAAATTCAT
1 TCAAAGTTC-AAATTCAT
64715400 TCAAAGTTCAAATTCA
1 TCAAAGTTCAAATTCA
64715416 GTGAGGGAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.35
Consensus pattern (17 bp):
TCAAAGTTCAAATTCAT
Found at i:64717782 original size:21 final size:21
Alignment explanation
Indices: 64717757--64717798 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
64717747 CGATATTATC
*
64717757 TATTTGTATCGTTTTATATTT
1 TATTTGTATCGTATTATATTT
* *
64717778 TATTTTTTTCGTATTATATTT
1 TATTTGTATCGTATTATATTT
64717799 ATATATATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.19, C:0.05, G:0.07, T:0.69
Consensus pattern (21 bp):
TATTTGTATCGTATTATATTT
Found at i:64743229 original size:29 final size:31
Alignment explanation
Indices: 64743161--64743244 Score: 77
Period size: 31 Copynumber: 2.8 Consensus size: 31
64743151 AATTAAAATT
* *
64743161 AAAATTTCATATATATATTTA-ATCCACAATA
1 AAAATTTTATATATATAATTACA-CCACAATA
*
64743192 AAAACTTTATATATATAATTACACCA-AAT-
1 AAAATTTTATATATATAATTACACCACAATA
* *
64743221 CAAATTTTATTTATCA-AATTACAC
1 AAAATTTTATATAT-ATAATTACAC
64743245 ATTAAATTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
29 19 0.42
30 4 0.09
31 21 0.47
32 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (31 bp):
AAAATTTTATATATATAATTACACCACAATA
Found at i:64749878 original size:102 final size:106
Alignment explanation
Indices: 64749686--64749884 Score: 325
Period size: 102 Copynumber: 1.9 Consensus size: 106
64749676 GTAAGGATGA
** *
64749686 GAGAGCATCATCCAAGCAGAATTGAGAATCAGATGCATATATATAAAGTGTATCTTAAGATCGGC
1 GAGAGCATCATCCAAGCAGAACCGAGAATCAGATGCATATATATAAAGTGTATCTTAAGATCAGC
*
64749751 TTCCAAGTTTCAACTTGACAAAACTTATCAACCCGATGCGT
66 TTCCAAGTTTCAACTAGACAAAACTTATCAACCCGATGCGT
*
64749792 GAGAGCATCATCCAAGCAGAACCGAGAATCAGATTCAT-T-TATAAA-TGTATCTT-AGATCAGC
1 GAGAGCATCATCCAAGCAGAACCGAGAATCAGATGCATATATATAAAGTGTATCTTAAGATCAGC
64749853 TTCCAAGTTTCAACTAGACAAAACTTATCAAC
66 TTCCAAGTTTCAACTAGACAAAACTTATCAAC
64749885 TGATCTGGAC
Statistics
Matches: 88, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
102 38 0.43
103 8 0.09
104 6 0.07
105 1 0.01
106 35 0.40
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (106 bp):
GAGAGCATCATCCAAGCAGAACCGAGAATCAGATGCATATATATAAAGTGTATCTTAAGATCAGC
TTCCAAGTTTCAACTAGACAAAACTTATCAACCCGATGCGT
Found at i:64750200 original size:69 final size:67
Alignment explanation
Indices: 64750061--64750200 Score: 163
Period size: 69 Copynumber: 2.1 Consensus size: 67
64750051 GATAGACTAC
* * * * * * *
64750061 GGGATTTCATGAAATCCCCTATTCTAGACATGCAGTGGAAAGAAACTATCATCTTGGCTGAAATG
1 GGGATTCCATGAAATCACCTATTCTAAACATGCAATGGAAAGAAACTATCATCTTAGCTAAAAAG
*
64750126 TT
66 CT
* * *
64750128 GGGATTCCATGAAATCATCTATTCTAAACATATGCAATGGGAAGCAACTATCATCTTAGCTAAAA
1 GGGATTCCATGAAATCACCTATTCTAAAC--ATGCAATGGAAAGAAACTATCATCTTAGCTAAAA
64750193 AGCT
64 AGCT
64750197 GGGA
1 GGGA
64750201 GATTCCGACA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
67 25 0.42
69 35 0.58
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (67 bp):
GGGATTCCATGAAATCACCTATTCTAAACATGCAATGGAAAGAAACTATCATCTTAGCTAAAAAG
CT
Found at i:64751388 original size:176 final size:177
Alignment explanation
Indices: 64750979--64751423 Score: 533
Period size: 176 Copynumber: 2.5 Consensus size: 177
64750969 AAAGCTTTCG
* * *** * *
64750979 AAAAATAAAGCATACTCG-TATTGGACACGTACCCGTATCCAGTACTTACCCAAGTCGGAGTAAT
1 AAAAATAAAGCATACTCGCT-TTGGACATGTACCCGTAGCCAGTACTTACATGAGTCCGAGTAAC
* * *
64751043 ATATTAATT-AGTTATAATTAGACCCTAAAAGGACAGTCTCTTCATAAACATACAAATTAAAGGC
65 ATGTTAATTAATTTATAATTAGACCCTAAAAAGACAGTCTCTTCATAAACATACAAATTAAAGGC
* * * * *
64751107 ACATATATATAGATAGATATCGATACGATCCTTCAAATAGATAGAAAAACCTTC
130 ACACACACACAGATACATATC-A-ACGATCCTTCAAATAGATAGAAAAA----C
* *
64751161 GAAAAATAAAGCATACTCACTTTGGACATGTACCCGTAGCCTGTACTTACATGAGTCCGAGTAAC
1 -AAAAATAAAGCATACTCGCTTTGGACATGTACCCGTAGCCAGTACTTACATGAGTCCGAGTAAC
* *
64751226 ATGTTAATTAATTATATAATTCGACCCTAAAAAGACAGTCTCTTCATAAACATACAAATTAGAGG
65 ATGTTAATTAATT-TATAATTAGACCCTAAAAAGACAGTCTCTTCATAAACATACAAATTAAAGG
* *
64751291 CGCACACACACATATACATA-C-ACGATCCTTCAAATAGATA-AAAAA-
129 CACACACACACAGATACATATCAACGATCCTTCAAATAGATAGAAAAAC
*
64751336 AAAACTATAAAGCATACTCGCTTTGGACATGTACCCGTAGCCGGTACTTACATGAGTCCGAGTAA
1 AAAA--ATAAAGCATACTCGCTTTGGACATGTACCCGTAGCCAGTACTTACATGAGTCCGAGTAA
*
64751401 CATGCTAATTAATTTTATAATTA
64 CATGTTAATTAA-TTTATAATTA
64751424 TCTGTTCATA
Statistics
Matches: 231, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
174 4 0.02
176 75 0.32
177 2 0.01
180 5 0.02
181 19 0.08
183 61 0.26
184 4 0.02
185 61 0.26
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (177 bp):
AAAAATAAAGCATACTCGCTTTGGACATGTACCCGTAGCCAGTACTTACATGAGTCCGAGTAACA
TGTTAATTAATTTATAATTAGACCCTAAAAAGACAGTCTCTTCATAAACATACAAATTAAAGGCA
CACACACACAGATACATATCAACGATCCTTCAAATAGATAGAAAAAC
Found at i:64754480 original size:24 final size:23
Alignment explanation
Indices: 64754449--64754493 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
64754439 TATACATGAA
*
64754449 TTAATAAAATATATAAAGTATATT
1 TTAATAAAATAAATAAA-TATATT
64754473 TTAATAAAATAAATAAATATA
1 TTAATAAAATAAATAAATATA
64754494 CGTATATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
TTAATAAAATAAATAAATATATT
Found at i:64754916 original size:22 final size:22
Alignment explanation
Indices: 64754860--64754916 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 22
64754850 ATATAAGTAT
64754860 ATATATATTATA-AGAATAATGC
1 ATATATA-TATACAGAATAATGC
* *
64754882 ATGTATGTCATACA-AATATATGC
1 ATATATAT-ATACAGAATA-ATGC
64754905 ATATATATATAC
1 ATATATATATAC
64754917 GTACCAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
21 1 0.04
22 16 0.57
23 11 0.39
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (22 bp):
ATATATATATACAGAATAATGC
Found at i:64754968 original size:3 final size:3
Alignment explanation
Indices: 64754960--64754992 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
64754950 AATAGGAAGA
64754960 AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA
64754993 AAGATGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:64755686 original size:16 final size:16
Alignment explanation
Indices: 64755667--64755711 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
64755657 ATAAATAAAT
64755667 AAATAAATAAAAATAA
1 AAATAAATAAAAATAA
* *
64755683 AAATAAACAACAATAA
1 AAATAAATAAAAATAA
* *
64755699 AAAGAGATAAAAA
1 AAATAAATAAAAA
64755712 AAGAAAGAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.78, C:0.04, G:0.04, T:0.13
Consensus pattern (16 bp):
AAATAAATAAAAATAA
Found at i:64758532 original size:11 final size:11
Alignment explanation
Indices: 64758516--64758548 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
64758506 TTTAATGTAC
*
64758516 ATTTTATAAAT
1 ATTTTAGAAAT
64758527 ATTTTAGAAAT
1 ATTTTAGAAAT
64758538 ATTTTAGAAAT
1 ATTTTAGAAAT
64758549 TATTACATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48
Consensus pattern (11 bp):
ATTTTAGAAAT
Found at i:64758848 original size:15 final size:15
Alignment explanation
Indices: 64758828--64758856 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
64758818 TATATCCTAA
64758828 AAAAATACTCAATAT
1 AAAAATACTCAATAT
64758843 AAAAATACTCAATA
1 AAAAATACTCAATA
64758857 ATTGTATACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.62, C:0.14, G:0.00, T:0.24
Consensus pattern (15 bp):
AAAAATACTCAATAT
Found at i:64760987 original size:11 final size:11
Alignment explanation
Indices: 64760971--64761035 Score: 53
Period size: 11 Copynumber: 5.6 Consensus size: 11
64760961 TAGGCAACTT
64760971 TTTTTTTGCGC
1 TTTTTTTGCGC
*
64760982 TTTTTTTGCGTTTT
1 TTTTTTTGCG---C
64760996 TTTTTTTGCGC
1 TTTTTTTGCGC
*
64761007 TTTTTACTT--TC
1 TTTTT--TTGCGC
64761018 TTTTTTTGCGC
1 TTTTTTTGCGC
64761029 TTTTTTT
1 TTTTTTT
64761036 CTTTTTTGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
9 2 0.05
11 29 0.67
13 2 0.05
14 10 0.23
ACGTcount: A:0.02, C:0.14, G:0.12, T:0.72
Consensus pattern (11 bp):
TTTTTTTGCGC
Found at i:64760988 original size:14 final size:14
Alignment explanation
Indices: 64760969--64761011 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
64760959 GGTAGGCAAC
64760969 TTTTTTTTTGCGC-
1 TTTTTTTTTGCGCT
*
64760982 --TTTTTTTGCGTT
1 TTTTTTTTTGCGCT
64760994 TTTTTTTTTGCGCT
1 TTTTTTTTTGCGCT
64761008 TTTT
1 TTTT
64761012 ACTTTCTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
11 10 0.40
14 15 0.60
ACGTcount: A:0.00, C:0.12, G:0.14, T:0.74
Consensus pattern (14 bp):
TTTTTTTTTGCGCT
Found at i:64761002 original size:25 final size:25
Alignment explanation
Indices: 64760969--64761072 Score: 108
Period size: 25 Copynumber: 4.2 Consensus size: 25
64760959 GGTAGGCAAC
64760969 TTTTTTTTTGCGCTTTTTTTGCGTT
1 TTTTTTTTTGCGCTTTTTTTGCGTT
*
64760994 TTTTTTTTTGCGC--TTTTTAC-TT
1 TTTTTTTTTGCGCTTTTTTTGCGTT
* *
64761016 TCTTTTTTTGCGCTTTTTTT-CTTT
1 TTTTTTTTTGCGCTTTTTTTGCGTT
** *
64761040 TTTGTTTTTTTTGCTGTTTTTGCTGTT
1 TTT-TTTTTTGCGCTTTTTTTGC-GTT
64761067 TTTTTT
1 TTTTTT
64761073 GTTTTTATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
22 14 0.21
23 7 0.11
24 9 0.14
25 27 0.41
26 4 0.06
27 5 0.08
ACGTcount: A:0.01, C:0.12, G:0.12, T:0.75
Consensus pattern (25 bp):
TTTTTTTTTGCGCTTTTTTTGCGTT
Found at i:64771722 original size:28 final size:28
Alignment explanation
Indices: 64771690--64771745 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
64771680 GTTCACCTCT
64771690 AACCTTAAGTTGTATTTTTGAATCCACC
1 AACCTTAAGTTGTATTTTTGAATCCACC
64771718 AACCTTAAGTTGTATTTTTGAATCCACC
1 AACCTTAAGTTGTATTTTTGAATCCACC
64771746 GCTGATTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.11, T:0.39
Consensus pattern (28 bp):
AACCTTAAGTTGTATTTTTGAATCCACC
Found at i:64776208 original size:98 final size:97
Alignment explanation
Indices: 64776026--64776209 Score: 244
Period size: 98 Copynumber: 1.9 Consensus size: 97
64776016 GGTACTGTTG
** * * *
64776026 ATTTTTGTTCATTTCATTTAAAAGGTATAATTTTAATTTTGGTCCCTATACTATGCAGTTATTTT
1 ATTTTTGTTCATTTCATTTAAAAAATATAATTTTAATTTTGATCCCTATACTAGGCAGTTATTTG
*
64776091 CATTTCGAGATCTCGTTGGTTGTTAATTGCCA
66 CATTTCGAGATCTCATTGGTTGTTAATTGCCA
* * * **
64776123 ATTTTTGTTCTTTTCATTTAAGAAAATATAATTTTTATTTTGATCCCTCTTTTAGGCAGTTATTT
1 ATTTTTGTTCATTTCATTTAA-AAAATATAATTTTAATTTTGATCCCTATACTAGGCAGTTATTT
64776188 GCATTTCGAGATCGT-ATTGGTT
65 GCATTTCGAGATC-TCATTGGTT
64776210 AATAAATGAT
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
97 20 0.27
98 53 0.72
99 1 0.01
ACGTcount: A:0.23, C:0.12, G:0.14, T:0.50
Consensus pattern (97 bp):
ATTTTTGTTCATTTCATTTAAAAAATATAATTTTAATTTTGATCCCTATACTAGGCAGTTATTTG
CATTTCGAGATCTCATTGGTTGTTAATTGCCA
Found at i:64776729 original size:10 final size:10
Alignment explanation
Indices: 64776714--64776761 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
64776704 TTAAAATATT
64776714 AAAATTATAA
1 AAAATTATAA
64776724 AAAATTATAA
1 AAAATTATAA
* *
64776734 AAATAGTAAAA
1 AAA-ATTATAA
64776745 AAAATTAT-A
1 AAAATTATAA
64776754 AAAATTAT
1 AAAATTAT
64776762 CATACCAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
9 9 0.27
10 16 0.48
11 8 0.24
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (10 bp):
AAAATTATAA
Found at i:64776756 original size:8 final size:9
Alignment explanation
Indices: 64776714--64776761 Score: 51
Period size: 9 Copynumber: 4.9 Consensus size: 9
64776704 TTAAAATATT
64776714 AAAATTATAA
1 AAAATTAT-A
64776724 AAAATTATA
1 AAAATTATA
*
64776733 AAAATAGTAAAA
1 AAAAT--T-ATA
64776745 AAAATTATA
1 AAAATTATA
64776754 AAAATTAT
1 AAAATTAT
64776762 CATACCAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
9 16 0.48
10 9 0.27
11 1 0.03
12 7 0.21
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (9 bp):
AAAATTATA
Found at i:64777029 original size:8 final size:8
Alignment explanation
Indices: 64777018--64777042 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
64777008 CTAATTTTAA
64777018 TAATATTT
1 TAATATTT
64777026 TAATATTT
1 TAATATTT
64777034 TAATATTT
1 TAATATTT
64777042 T
1 T
64777043 TATTAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TAATATTT
Found at i:64777180 original size:13 final size:14
Alignment explanation
Indices: 64777162--64777193 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
64777152 AATTAAAGAC
64777162 GGTTAACT-TTAAA
1 GGTTAACTATTAAA
64777175 GGTTAACTATTAAA
1 GGTTAACTATTAAA
64777189 -GTTAA
1 GGTTAA
64777194 TGGTCAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 13 0.72
14 5 0.28
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (14 bp):
GGTTAACTATTAAA
Found at i:64777302 original size:87 final size:90
Alignment explanation
Indices: 64777202--64777447 Score: 263
Period size: 91 Copynumber: 2.8 Consensus size: 90
64777192 AATGGTCAAT
* * * *
64777202 GAGT-TTTTTTGATGTATTTTGGCAA-TTTAAGTACCCAATCGAGTGCAAAGAAAAC-AGAGGCT
1 GAGTCTTTTTTGATGTATTTT-GAAAGTTTAAGTACCCAATTGAGTGAAAAAAAAACAAG-GGCT
*
64777264 TAA-TTGGTTT-TTTTTTTATGTTTGA
64 TAATTTGGTTTATTTTTTTAAGTTTGA
* * **
64777289 GAG-CTTTTTTGATGCATTTTGAAAGTTCAAGTACTTAATTGAGTGAAAAAAAAAAACAAGGGCT
1 GAGTCTTTTTTGATGTATTTTGAAAGTTTAAGTACCCAATTGAGTG--AAAAAAAAACAAGGGCT
**
64777353 TAATTTTTTTTATTTTTTTAAGTTTGA
64 TAATTTGGTTTATTTTTTTAAGTTTGA
* * * * *
64777380 GGGTCTTTTTT-ATGTATTTTAAAAGTTTAAGTACCCAATTGAGTGAAAAAAAAATAAAGACTTA
1 GAGTCTTTTTTGATGTATTTTGAAAGTTTAAGTACCCAATTGAGTGAAAAAAAAACAAGGGCTTA
64777444 ATTT
66 ATTT
64777448 TTTTTTGAAA
Statistics
Matches: 131, Mismatches: 20, Indels: 14
0.79 0.12 0.08
Matches are distributed among these distances:
86 3 0.02
87 34 0.26
89 35 0.27
90 7 0.05
91 45 0.34
92 7 0.05
ACGTcount: A:0.33, C:0.08, G:0.17, T:0.41
Consensus pattern (90 bp):
GAGTCTTTTTTGATGTATTTTGAAAGTTTAAGTACCCAATTGAGTGAAAAAAAAACAAGGGCTTA
ATTTGGTTTATTTTTTTAAGTTTGA
Found at i:64780070 original size:27 final size:28
Alignment explanation
Indices: 64780022--64780075 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
64780012 TAAAATAGGA
* *
64780022 AAAATAATATATTTGGTAATAATAATAT
1 AAAATAATATATATGGTAATAAAAATAT
64780050 AAAATAATA-ATAT-GTACATAAAAATA
1 AAAATAATATATATGGTA-ATAAAAATA
64780076 CATATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.13
27 11 0.48
28 9 0.39
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (28 bp):
AAAATAATATATATGGTAATAAAAATAT
Found at i:64780138 original size:37 final size:38
Alignment explanation
Indices: 64780038--64780139 Score: 95
Period size: 37 Copynumber: 2.6 Consensus size: 38
64780028 ATATATTTGG
64780038 TAATAATAATA--TAAAATAATAA-TATGTACATAAAAA
1 TAATAATAATATCTAAAATAA-AAGTATGTACATAAAAA
* *
64780074 TACATATATATATATGCATATAATAAAAGTATGTA-ATAATAA
1 TA-ATA-ATA-ATAT-C-TAAAATAAAAGTATGTACATAAAAA
*
64780116 TAATAATAATATCTACAATAAAAG
1 TAATAATAATATCTAAAATAAAAG
64780140 AAAATATTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 13 0.24
38 4 0.07
39 7 0.13
40 3 0.05
41 3 0.05
42 10 0.18
43 13 0.24
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (38 bp):
TAATAATAATATCTAAAATAAAAGTATGTACATAAAAA
Found at i:64780988 original size:26 final size:26
Alignment explanation
Indices: 64780924--64780986 Score: 96
Period size: 25 Copynumber: 2.5 Consensus size: 26
64780914 TTTTTTGGGG
64780924 GGGTTAGG-TTTTTCTTTTTCTTTTT
1 GGGTTAGGTTTTTTCTTTTTCTTTTT
64780949 GGGTTAGGTTTTTTCTTTTT-TTTTT
1 GGGTTAGGTTTTTTCTTTTTCTTTTT
*
64780974 -GGTTAGATTTTTT
1 GGGTTAGGTTTTTT
64780987 TTTGGGGAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
24 12 0.33
25 13 0.36
26 11 0.31
ACGTcount: A:0.06, C:0.05, G:0.21, T:0.68
Consensus pattern (26 bp):
GGGTTAGGTTTTTTCTTTTTCTTTTT
Found at i:64781484 original size:37 final size:37
Alignment explanation
Indices: 64781433--64781523 Score: 137
Period size: 37 Copynumber: 2.5 Consensus size: 37
64781423 CTTCAATATG
*
64781433 CTCTTCTATCGCTTCAGTGAGATAAGGTTTTGGTCTT
1 CTCTTCTGTCGCTTCAGTGAGATAAGGTTTTGGTCTT
* *
64781470 CTCTTCTGTTGCTTCCGTGAGATAAGGTTTTGGTCTT
1 CTCTTCTGTCGCTTCAGTGAGATAAGGTTTTGGTCTT
* *
64781507 CTCTTCTGCCACTTCAG
1 CTCTTCTGTCGCTTCAG
64781524 AAAGGCAAGA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.43
Consensus pattern (37 bp):
CTCTTCTGTCGCTTCAGTGAGATAAGGTTTTGGTCTT
Found at i:64781778 original size:89 final size:88
Alignment explanation
Indices: 64781634--64781932 Score: 270
Period size: 88 Copynumber: 3.4 Consensus size: 88
64781624 GTGATCCTGA
* * * *
64781634 GCTCAACTCATTTCTCGCAATATGAATTGACTTTTAAAAACTAGATATTAAAAACAGAAATTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACTAGATATTAAAAACAGAAATTG-A
* *
64781699 AAATAGCTCAGCACGTGAGCAAAG
65 AAATACCTCAGCACGTGACCAAAG
* ** **
64781723 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAC-AGAATTTTCCAAACAGATTTTGA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACTAG-ATATTAAAAACAGAAATTGA
* * **
64781787 AAATACCTCGGCATGTGACCCGAG
65 AAATACCTCAGCACGTGACCAAAG
* ** * *
64781811 GCTCAACTCACCTCTCATAATATGAGTTGATTCTTGAAAAGCATA-A-ATTGAAAAA-ATATTAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAA-C-TAGATATT-AAAAACAGA--AA
**
64781873 TTGAAAATACCTCA--ACGTG-CCTCGAG
61 TTGAAAATACCTCAGCACGTGACC-AAAG
*
64781899 GCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTT
64781933 GACGAACAGA
Statistics
Matches: 172, Mismatches: 30, Indels: 17
0.79 0.14 0.08
Matches are distributed among these distances:
87 2 0.01
88 100 0.58
89 56 0.33
90 13 0.08
91 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (88 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACTAGATATTAAAAACAGAAATTGAA
AATACCTCAGCACGTGACCAAAG
Found at i:64782192 original size:14 final size:14
Alignment explanation
Indices: 64782156--64782206 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
64782146 GAGTTGATTT
* *
64782156 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
64782170 TTGAAAAAAACAGAAA
1 TTG--AAAAACAGAAA
*
64782186 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
64782200 TT-AAAAA
1 TTGAAAAA
64782207 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
16 12 0.39
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:64782319 original size:76 final size:73
Alignment explanation
Indices: 64782186--64782425 Score: 315
Period size: 76 Copynumber: 3.2 Consensus size: 73
64782176 AAAACAGAAA
* * *
64782186 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATAT
64782251 GAGTTAATTT
64 GAGTTAATTT
* *
64782261 TTGACAAACAGAAATTGAAAAGTACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAG-ACCTCAGCATGT-AGCC-AGGCTCAACTCACCTCTCGCAATA
*
64782326 TGAGTTGATTTT
63 TGAGTT-AATTT
* *
64782338 TTGAAAAATAGAAATTGAAAACACCTCAGCATGT-G--AGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATGA
*
64782400 GTTGATTT
66 GTTAATTT
*
64782408 TTGAAAAACATAAATTGA
1 TTGAAAAACAGAAATTGA
64782426 GCAGAAATTG
Statistics
Matches: 147, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
70 19 0.13
71 30 0.20
74 1 0.01
75 19 0.13
76 55 0.37
77 23 0.16
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCATGTAGCCAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTT
Found at i:64782543 original size:70 final size:71
Alignment explanation
Indices: 64782430--64782563 Score: 225
Period size: 70 Copynumber: 1.9 Consensus size: 71
64782420 AATTGAGCAG
* *
64782430 AAATTGAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTT-ATTTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTT
64782494 GATGAT
66 GATGAT
* *
64782500 AAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTT
64782564 GAATTAAAAC
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
70 53 0.90
71 6 0.10
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGGGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTT
GATGAT
Found at i:64782550 original size:154 final size:152
Alignment explanation
Indices: 64782306--64782660 Score: 432
Period size: 154 Copynumber: 2.3 Consensus size: 152
64782296 AAGCCAAGGC
64782306 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCATG
1 TCAACTCACCTCTCGCAATATGAGTT-ATTTTTTG-AAAATA-AAATTGAAAACACCTCAGCATG
* * *
64782371 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-A-AAAACATAAATTG-AGCAGAAA
63 TGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAATAAAACAGAAATTGAAACAGAAA
* *
64782433 TTGAAAATACCTCAACGGGTCTTGAGGT
128 -TGAAAACACCTC-A-GCGTCTTGAGGT
** * *
64782461 TCAACTCACCTCTCGCAATATGAGTTATTTTTTGATGAT-AAATTGAAAATACCTCAATGTGACT
1 TCAACTCACCTCTCGCAATATGAGTTATTTTTTGAAAATAAAATTGAAAACACCTC-A-G-CA-T
* *
64782525 -TGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTTTGAATTAAAACAGAAATTGAAAATAG
62 GTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAA-TAAAACAGAAATTG-AAACAG
*
64782589 AAATGGAAACACCTCAGCGTCTTGAGGT
125 AAATGAAAACACCTCAGCGTCTTGAGGT
*
64782617 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAACATAAA
1 TCAACTCACCTCTCGCAATATGAG-TTATTTTTTGAAA-ATAAA
64782661 TTAAAAAAAA
Statistics
Matches: 173, Mismatches: 15, Indels: 20
0.83 0.07 0.10
Matches are distributed among these distances:
151 15 0.09
152 1 0.01
153 4 0.02
154 47 0.27
155 28 0.16
156 35 0.20
157 23 0.13
158 12 0.07
159 8 0.05
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (152 bp):
TCAACTCACCTCTCGCAATATGAGTTATTTTTTGAAAATAAAATTGAAAACACCTCAGCATGTGA
GGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAATAAAACAGAAATTGAAACAGAAATGA
AAACACCTCAGCGTCTTGAGGT
Found at i:64782796 original size:74 final size:72
Alignment explanation
Indices: 64782709--64782985 Score: 353
Period size: 74 Copynumber: 3.8 Consensus size: 72
64782699 CGACATGTGG
*
64782709 CCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTAAAAAGCAAAAATTGAAAATACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTAAAAA-CAAAAATTGAAAATACC
64782774 TCAGCGTGT
64 TCAGCGTGT
* * *
64782783 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAA-AGAATTTGAAAATATC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT-A-AAAACAAAAATTGAAAATACC
64782847 TCAGCGTGT
64 TCAGCGTGT
* * * *
64782856 CATGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAAC-AAAATTGAAATTACCT
1 C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCT
*
64782920 CAGCGTCT
65 CAGCGTGT
* * ** * *
64782928 -TGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAACATAAATTAAAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAA
64782986 ACGAAAATTG
Statistics
Matches: 179, Mismatches: 19, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
70 42 0.23
71 8 0.04
72 22 0.12
73 28 0.16
74 75 0.42
75 4 0.02
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.30
Consensus pattern (72 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAAAAATTGAAAATACCTC
AGCGTGT
Found at i:64782898 original size:403 final size:402
Alignment explanation
Indices: 64782305--64783043 Score: 987
Period size: 403 Copynumber: 1.8 Consensus size: 402
64782295 TAAGCCAAGG
* *
64782305 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAACACCTCAGCAT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAACACCTCAGCAT
64782370 GTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATTGAGCAGAAATT
66 GTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG----A-ATAAA-T-A-CAGAAATT
* * **
64782435 GAAAATACCTCAACGGGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTATTTTTTGA-TGA
123 GAAAATACCTCAACGGGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTATTTTTTGACAAA
* * *
64782499 -TAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCACAATATGAGTTGATTTT
188 CAAAATTGAAAATACCTC-A-GCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
* * *
64782563 TGAATTAAAACAGAAATTGAAAATA-G-AAA-TGGAAACACCTCAGCGTCT-TGAGGTTCAACTC
251 T---TTAAAACAGAAATT-AAAAAACGAAAATTGAAAACACCTCAGCGTCTCTGAGGCTCAACTC
64782624 ACCTCTCGCAATATGAGCTGATTTTTTGAAACATAAATTAAAAAAAATAAATTAAAATAGAATTT
312 ACCTCTCGCAATATGAGCTGATTTTTTGAAACATAAATTAAAAAAAATAAATTAAAATAGAATTT
64782689 GAAAGGACCTCGACATGTGGCCGAGA
377 GAAAGGACCTCGACATGTGGCCGAGA
*
64782715 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTT-AAAAAGCAAAAATTGAAAATACCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAAA-CAAAAATTGAAAACACCTCAGC
* *
64782779 GTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-ATAAA-A-AGAATTTGAA
64 ATGT--GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAATAAATACAGAAATTGAA
* * *
64782841 AATATCTCAGCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACA
126 AATACCTCAACGGGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTT-ATTTTTTGACAAACA
* * * * *
64782905 AAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTG
190 AAATTGAAAATACCTCAGCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTA
* * *
64782970 AAACATAAATTAAAAAACGAAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCG
255 AAACAGAAATTAAAAAACGAAAATTGAAAACACCTCAGCGTCTCTGAGGCTCAACTCACCTCTCG
64783035 CAATATGAG
320 CAATATGAG
64783044 TTGAAATTAA
Statistics
Matches: 291, Mismatches: 26, Indels: 31
0.84 0.07 0.09
Matches are distributed among these distances:
399 5 0.02
400 13 0.04
401 3 0.01
402 16 0.05
403 129 0.44
404 3 0.01
405 16 0.05
408 5 0.02
410 36 0.12
411 26 0.09
413 33 0.11
414 6 0.02
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (402 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAACACCTCAGCAT
GTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAATAAATACAGAAATTGAAAATAC
CTCAACGGGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTATTTTTTGACAAACAAAATTG
AAAATACCTCAGCGACTTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTTTAAAACAG
AAATTAAAAAACGAAAATTGAAAACACCTCAGCGTCTCTGAGGCTCAACTCACCTCTCGCAATAT
GAGCTGATTTTTTGAAACATAAATTAAAAAAAATAAATTAAAATAGAATTTGAAAGGACCTCGAC
ATGTGGCCGAGA
Found at i:64783090 original size:71 final size:71
Alignment explanation
Indices: 64782976--64783114 Score: 233
Period size: 71 Copynumber: 2.0 Consensus size: 71
64782966 TTTGAAACAT
* * *
64782976 AAATTAAAAAACGAAAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATAT
64783041 GAGTTG
66 GAGTTG
* *
64783047 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTTGCAATAT
1 AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATAT
64783112 GAG
66 GAG
64783115 CTGATTTTGA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.22
Consensus pattern (71 bp):
AAATTAAAAAACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATAT
GAGTTG
Found at i:64783140 original size:156 final size:155
Alignment explanation
Indices: 64782836--64783126 Score: 419
Period size: 156 Copynumber: 1.9 Consensus size: 155
64782826 TAAAAAGAAT
* ** *
64782836 TTGAAAATATCTCAGCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
1 TTGAAAATACCTCAGCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAA
* ** * *
64782901 AACAAAATTGAAATTACCTCAGCGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
66 AACAAAATTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA--TT
64782966 TTTGAAACATAAATTAAAAAACGAAAA
129 TTTGAAACATAAATTAAAAAACGAAAA
64782993 TTGAAAATACCTCAGCGTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-AATT-AAA
1 TTGAAAATACCTCAGCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAA
*
64783055 ACACAAAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA-
66 A-AC-AAAATTGAAAATACCTCAGCGT-CCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
64783119 TTTTGAAA
128 TTTTGAAA
64783127 AGTAGAAATT
Statistics
Matches: 121, Mismatches: 10, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
154 11 0.09
155 4 0.03
156 55 0.45
157 51 0.42
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (155 bp):
TTGAAAATACCTCAGCGTGTCATGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTGAAA
AACAAAATTGAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TGAAACATAAATTAAAAAACGAAAA
Found at i:64783561 original size:73 final size:73
Alignment explanation
Indices: 64783267--64783601 Score: 435
Period size: 73 Copynumber: 4.5 Consensus size: 73
64783257 AGTGTGTAAT
*
64783267 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTT-AAAACAGAAATTGAAAATAC
*
64783332 CTCAGCATGTGAAC
63 CTCAGC--GTG-TC
*
64783346 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAACAGAAATTGAAAATACCT
*
64783410 CAACGTGTC
65 CAGCGTGTC
* ** * * * *
64783419 TTGAGGCT-AACTCATTTCTCGCAATATAAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAAATACCTC
64783482 AGCGTGTC
66 AGCGTGTC
** *
64783490 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTAACAA-AGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAA-AACAGAAATTGAAAATACCT
64783554 CAGCGTGTC
65 CAGCGTGTC
*
64783563 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
64783602 GAAAACAAAA
Statistics
Matches: 234, Mismatches: 18, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
71 40 0.17
72 25 0.11
73 93 0.40
74 11 0.05
76 25 0.11
77 8 0.03
78 31 0.13
79 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.32
Consensus pattern (73 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAACAGAAATTGAAAATACCTC
AGCGTGTC
Found at i:64783576 original size:145 final size:145
Alignment explanation
Indices: 64783307--64783618 Score: 418
Period size: 144 Copynumber: 2.2 Consensus size: 145
64783297 GTTGATTTTT
*
64783307 TTTTAAAAACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCA-GTGAACCGAGGCTCAACTCACCTCTCGCAATA
* **
64783372 TAAGTTGATTTTTTTTAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTAACTCATTTC
65 TAAGTTGATTTTTTTTAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTAACTCACCTC
*
64783437 TCGCAATATAAGTTGAA
130 TAGCAATATAAGTTG-A
* * **
64783454 TTTTGAAAACAGAAATTGAAATTACCTCAGC-GTG-TCCTGAGGCTCAACTCATTTCTCGCAATA
1 TTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
* * *
64783517 TGAGTTGA-TTTTTTTAACAA-AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
65 TAAGTTGATTTTTTTTAA-AACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCT-AACTCACC
*
64783580 TCTAGCAATATGAGTTGA
128 TCTAGCAATATAAGTTGA
*
64783598 TTTTGAAAACAAAAATT-AAAA
1 TTTTGAAAACAGAAATTGAAAA
64783619 GGCTTAACTC
Statistics
Matches: 147, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
143 3 0.02
144 59 0.40
145 56 0.38
147 29 0.20
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (145 bp):
TTTTGAAAACAGAAATTGAAAATACCTCAGCAGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
AAGTTGATTTTTTTTAAAACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTAACTCACCTCT
AGCAATATAAGTTGA
Found at i:64783764 original size:71 final size:70
Alignment explanation
Indices: 64783618--64783793 Score: 203
Period size: 71 Copynumber: 2.5 Consensus size: 70
64783608 AAAAATTAAA
* * * * * * * **
64783618 AGGCTTAACTCACCTATCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
64783682 CCCCG
66 CCCCG
*
64783687 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGT
* **
64783752 GTCTTG
65 GCCCCG
64783758 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
64783794 CCTTGGAAAG
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
69 25 0.27
70 6 0.07
71 60 0.66
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:64792117 original size:12 final size:12
Alignment explanation
Indices: 64792097--64792132 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
64792087 TCGGATATGC
*
64792097 AATGTATGAATG
1 AATGCATGAATG
64792109 AATGCATGAATG
1 AATGCATGAATG
64792121 AATGCATGAATG
1 AATGCATGAATG
64792133 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:64793796 original size:27 final size:28
Alignment explanation
Indices: 64793748--64793819 Score: 67
Period size: 28 Copynumber: 2.5 Consensus size: 28
64793738 TAAAATAGGA
* *
64793748 AAAATAATATATTTGGTAATAATAATAT
1 AAAATAATATATATGGTAATAAAAATAT
*
64793776 AAAATAATA-ATAT-GTACATAAAAATAC
1 AAAATAATATATATGGTA-ATAAAAATAT
*
64793803 ATATATATATATATATG
1 A-AAATA-ATATATATG
64793820 CATATAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
26 3 0.09
27 12 0.34
28 13 0.37
29 3 0.09
30 4 0.11
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.36
Consensus pattern (28 bp):
AAAATAATATATATGGTAATAAAAATAT
Found at i:64794679 original size:25 final size:25
Alignment explanation
Indices: 64794646--64794706 Score: 97
Period size: 25 Copynumber: 2.4 Consensus size: 25
64794636 GGTTTCTTGG
64794646 TTTTTTTTTGGGGTTAGG-TTTTTC
1 TTTTTTTTTGGGGTTAGGTTTTTTC
*
64794670 TTTTTCTTTTTGGGTTAGGTTTTTTC
1 TTTTT-TTTTGGGGTTAGGTTTTTTC
64794696 TTTTTTTTTGG
1 TTTTTTTTTGG
64794707 TTAGATTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 5 0.15
25 17 0.52
26 11 0.33
ACGTcount: A:0.03, C:0.05, G:0.21, T:0.70
Consensus pattern (25 bp):
TTTTTTTTTGGGGTTAGGTTTTTTC
Found at i:64794679 original size:26 final size:25
Alignment explanation
Indices: 64794646--64794717 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
64794636 GGTTTCTTGG
*
64794646 TTTTTTTTTGGGGTTAGG-TTTTTC
1 TTTTTTTTTTGGGTTAGGTTTTTTC
64794670 TTTTTCTTTTTGGGTTAGGTTTTTTC
1 TTTTT-TTTTTGGGTTAGGTTTTTTC
*
64794696 -TTTTTTTTT-GGTTAGATTTTTT
1 TTTTTTTTTTGGGTTAGGTTTTTT
64794718 TTTGGGAGGG
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 12 0.27
24 10 0.23
25 16 0.36
26 6 0.14
ACGTcount: A:0.06, C:0.04, G:0.19, T:0.71
Consensus pattern (25 bp):
TTTTTTTTTTGGGTTAGGTTTTTTC
Found at i:64794717 original size:25 final size:23
Alignment explanation
Indices: 64794646--64794720 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 23
64794636 GGTTTCTTGG
**
64794646 TTTTTTTTTGGGGTTAGGTTTTTCT
1 TTTTTTTTTTTGGTTA-GTTTTT-T
* * *
64794671 TTTTCTTTTTGGGTTAGGTTTTT
1 TTTTTTTTTTTGGTTAGTTTTTT
* *
64794694 TCTTTTTTTTTGGTTAGATTTTT
1 TTTTTTTTTTTGGTTAGTTTTTT
64794717 TTTT
1 TTTT
64794721 GGGAGGGCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
23 23 0.55
24 5 0.12
25 14 0.33
ACGTcount: A:0.05, C:0.04, G:0.19, T:0.72
Consensus pattern (23 bp):
TTTTTTTTTTTGGTTAGTTTTTT
Found at i:64796963 original size:91 final size:89
Alignment explanation
Indices: 64796857--64797227 Score: 377
Period size: 91 Copynumber: 4.1 Consensus size: 89
64796847 TTCTCCTCTG
* *
64796857 TTTTT-TTTTTTAAATTTTCATTTCGAGA-TCTTAGTTAGGCTTATCGTAGGATTTGATTTTCAT
1 TTTTTATTTTTTAAATTTTCATTTCGA-ACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCAT
64796920 TTCTTTATAGGCCGGATCTTCAATTA
65 TTCTTTATAGG-CGGATCTTCAATTA
* * * *
64796946 TTATTTATTTTTGAAATTTTCACTTCGAACACTTAGTTAAGCTTATCGTAGCATTTGACTTTCAT
1 TT-TTTATTTTTTAAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCAT
*
64797011 TTCTTTACATGGCGGATCTTCAAATTTTTTTA
65 TTCTTTATA-GGCGGATCTTC-AA-----TTA
* * *
64797043 TTTCTTGGCTTTTTTTTTTAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTTATT
1 --T-TT---TTATTTTTTAAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATT
* *
64797108 TTCA-TT-TATAT-GGCGGATCATC-A--A
60 TTCATTTCTTTATAGGCGGATCTTCAATTA
*
64797132 TTTTTA-TTTCT-AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATT
1 TTTTTATTTTTTAAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATT
* *
64797195 TCTTAATATGTCGGATCTTCAATT-
66 TCTTTATA-GGCGGATCTTCAATTA
64797219 TTTTTATTT
1 TTTTTATTT
64797228 CTCTCTCTCT
Statistics
Matches: 234, Mismatches: 24, Indels: 49
0.76 0.08 0.16
Matches are distributed among these distances:
81 49 0.21
82 6 0.03
83 5 0.02
85 9 0.04
86 3 0.01
87 7 0.03
88 2 0.01
89 3 0.01
90 4 0.02
91 67 0.29
92 4 0.02
96 1 0.00
97 3 0.01
98 10 0.04
99 2 0.01
100 4 0.02
101 2 0.01
102 53 0.23
ACGTcount: A:0.22, C:0.14, G:0.12, T:0.52
Consensus pattern (89 bp):
TTTTTATTTTTTAAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTGATTTTCATT
TCTTTATAGGCGGATCTTCAATTA
Found at i:64797166 original size:183 final size:192
Alignment explanation
Indices: 64796858--64797300 Score: 577
Period size: 183 Copynumber: 2.3 Consensus size: 192
64796848 TCTCCTCTGT
* * *
64796858 TTTTTTTTTTAAATTTTCATTTCGAGA-TCTTAGTTAGGCTTATCGTAGGATTTGATTTTCATTT
1 TTTTTTTTTTAAATTTTCATTTCGA-ACTCTTAGTTAAGCTTATCGTAGCATTTAATTTTCA-TT
* * *
64796922 CTTTATAGGCCGGATCTTCAATTATTATTTATTTTTGAAATTTTCACTTCGAACACTTAGTTAAG
64 -TATATAGGCCGGATCATCAA-TATTATTTATTTCT-AAATTTTCACTTCGAACACTTAGTTAAG
*
64796987 CTTATCGTAGCATTTGACTTTCATTTCTTTACATGGCGGATCTTCAAATTTTTTTA-TT-TCT-T
126 CTTATCGTAGCATTTGACTTTCATTTCTTAACATGGCGGATCTTC-AATTTTTTTATTTCTCTCT
*
64797049 GGC
190 CGC
*
64797052 TTTTTTTTTT-AATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTTATTTTCATTTA
1 TTTTTTTTTTAAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTAATTTTCATTTA
* *
64797116 TAT-GG-CGGATCATC-A-ATT-TTTATTTCT-AATTTTCATTTCGAACTCTTAGTTAAGCTTAT
66 TATAGGCCGGATCATCAATATTATTTATTTCTAAATTTTCACTTCGAACACTTAGTTAAGCTTAT
* * * *
64797175 CGTAGCATTTGATTTTCATTTCTTAATATGTCGGATCTTCAATTTTTTTATTTCTCTCTCTC
131 CGTAGCATTTGACTTTCATTTCTTAACATGGCGGATCTTCAATTTTTTTATTTCTCTCTCGC
* * *
64797237 TTTTTTTTTTAAATTTTCATTTTGAACAT-TTACTTAAGCTTATCGAAGCATTTAATTTTCATTT
1 TTTTTTTTTTAAATTTTCATTTCGAAC-TCTTAGTTAAGCTTATCGTAGCATTTAATTTTCATTT
64797301 CTTACTTAAG
Statistics
Matches: 225, Mismatches: 18, Indels: 20
0.86 0.07 0.08
Matches are distributed among these distances:
182 10 0.04
183 68 0.30
184 3 0.01
185 20 0.09
186 50 0.22
187 1 0.00
188 1 0.00
189 8 0.04
190 2 0.01
191 4 0.02
192 3 0.01
193 45 0.20
194 10 0.04
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.52
Consensus pattern (192 bp):
TTTTTTTTTTAAATTTTCATTTCGAACTCTTAGTTAAGCTTATCGTAGCATTTAATTTTCATTTA
TATAGGCCGGATCATCAATATTATTTATTTCTAAATTTTCACTTCGAACACTTAGTTAAGCTTAT
CGTAGCATTTGACTTTCATTTCTTAACATGGCGGATCTTCAATTTTTTTATTTCTCTCTCGC
Found at i:64808184 original size:4 final size:4
Alignment explanation
Indices: 64808175--64808210 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
64808165 CAATAAGCGC
* *
64808175 CATA CATA CATG CATG CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA
64808211 TATATACCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.44, C:0.25, G:0.06, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:64810746 original size:34 final size:34
Alignment explanation
Indices: 64810698--64810769 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
64810688 TTTACGGTCG
* * * *
64810698 TCCATGTTTGAAGTCTGTGATTGTGACGGCTCTT
1 TCCATGTTTAAAGTCCGTAACTGTGACGGCTCTT
* *
64810732 TCCATGTTTAAAGTCCGTAACTGTGACTGTTCTT
1 TCCATGTTTAAAGTCCGTAACTGTGACGGCTCTT
64810766 TCCA
1 TCCA
64810770 ACAATATCGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (34 bp):
TCCATGTTTAAAGTCCGTAACTGTGACGGCTCTT
Found at i:64813442 original size:44 final size:44
Alignment explanation
Indices: 64813394--64813525 Score: 210
Period size: 44 Copynumber: 3.0 Consensus size: 44
64813384 TACAAAAAAC
64813394 TAAATCCACAAGGATTAATAGCAGAATTTGACCATTTTTAGCAT
1 TAAATCCACAAGGATTAATAGCAGAATTTGACCATTTTTAGCAT
*
64813438 TAAATCCACAAGGATTAGTAGCAGAATTTGACCATTTTTAGCAT
1 TAAATCCACAAGGATTAATAGCAGAATTTGACCATTTTTAGCAT
* * * * *
64813482 TAAATTCACAAGGACTAATATCAGAACTTGACCATTTTAAGCAT
1 TAAATCCACAAGGATTAATAGCAGAATTTGACCATTTTTAGCAT
64813526 AGAAAGAGGA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 81 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (44 bp):
TAAATCCACAAGGATTAATAGCAGAATTTGACCATTTTTAGCAT
Found at i:64813685 original size:247 final size:248
Alignment explanation
Indices: 64813234--64813727 Score: 760
Period size: 247 Copynumber: 2.0 Consensus size: 248
64813224 AATAAAAAAC
* * * *
64813234 TAAATCCACAAGGACTAATAGCAAAATTTGACCATTTTTAGCATATAATCAGGATTTGCCTTACT
1 TAAATCCACAAGGACTAATAGCAAAACTTGACCATTTTAAGCATAGAAACAGGATTTGCCTTACT
* * * *
64813299 GGATCAAGACGAAGGTAAACAATCCTTTTGCATGGTTCATTGAAGCTTCAAAAACTATAAGGACT
66 GGATCAAGACGAAGGTAAACAATCCTCTTCCATGGTTCATTGAAGCTTCAAAAACAATAAGAACT
* *
64813364 AAAACTGACCAAATTTAGAGTACAAAAAACTAAATCCACAAGGATTAATAGCAGAATTTGACCAT
131 AAAACTGACCAAATTTAGAATACAAAAAACTAAATCCACAAGGATTAATAGCAAAATTTGACCAT
* *
64813429 TTTTAGCATTAAATCCACAAGGATTAGTAGCAGAATTTGACCATTTTTAGCAT
196 TTTTAGCATTAAATCCACAAGGATTAATAACAGAATTTGACCATTTTTAGCAT
* * * *
64813482 TAAATTCACAAGGACTAATATCAGAACTTGACCATTTTAAGCATAGAAAGAGGATTTGCCTTACT
1 TAAATCCACAAGGACTAATAGCAAAACTTGACCATTTTAAGCATAGAAACAGGATTTGCCTTACT
* *
64813547 GGATCAAGAC-AAGGGT-AACAATCCTCTTCCATGGTTCATTGGAGCTTTCAAAAAGAATAAGAA
66 GGATCAAGACGAA-GGTAAACAATCCTCTTCCATGGTTCATTGAAGC-TTCAAAAACAATAAGAA
* * *
64813610 CTAAAACTGAGCAAA-TTAGAATACAGAAAACTAAATCCACAAGGATTAATAGCAAAATTTGAGC
129 CTAAAACTGACCAAATTTAGAATACAAAAAACTAAATCCACAAGGATTAATAGCAAAATTTGACC
64813674 ATTTTTAGCATTAAATCCACAAGGATTAATAACAGAATTTGACCATTTTTAGCA
194 ATTTTTAGCATTAAATCCACAAGGATTAATAACAGAATTTGACCATTTTTAGCA
64813728 ATATAAGAGG
Statistics
Matches: 223, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
247 125 0.56
248 98 0.44
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (248 bp):
TAAATCCACAAGGACTAATAGCAAAACTTGACCATTTTAAGCATAGAAACAGGATTTGCCTTACT
GGATCAAGACGAAGGTAAACAATCCTCTTCCATGGTTCATTGAAGCTTCAAAAACAATAAGAACT
AAAACTGACCAAATTTAGAATACAAAAAACTAAATCCACAAGGATTAATAGCAAAATTTGACCAT
TTTTAGCATTAAATCCACAAGGATTAATAACAGAATTTGACCATTTTTAGCAT
Found at i:64813690 original size:44 final size:44
Alignment explanation
Indices: 64813641--64813727 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
64813631 TACAGAAAAC
* *
64813641 TAAATCCACAAGGATTAATAGCAAAATTTGAGCATTTTTAGCAT
1 TAAATCCACAAGGATTAATAACAAAATTTGACCATTTTTAGCAT
*
64813685 TAAATCCACAAGGATTAATAACAGAATTTGACCATTTTTAGCA
1 TAAATCCACAAGGATTAATAACAAAATTTGACCATTTTTAGCA
64813728 ATATAAGAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (44 bp):
TAAATCCACAAGGATTAATAACAAAATTTGACCATTTTTAGCAT
Found at i:64814731 original size:20 final size:21
Alignment explanation
Indices: 64814696--64814737 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
64814686 TAAAAAAATT
64814696 AAATTTAAATGAAAATT-TTG
1 AAATTTAAATGAAAATTGTTG
64814716 AAATTTAGAATG-AAATTGTTG
1 AAATTTA-AATGAAAATTGTTG
64814737 A
1 A
64814738 TGTCTTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.48, C:0.00, G:0.14, T:0.38
Consensus pattern (21 bp):
AAATTTAAATGAAAATTGTTG
Found at i:64819180 original size:24 final size:23
Alignment explanation
Indices: 64819153--64819197 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
64819143 ATATATATTA
64819153 TTTTTAATTTAACATTTTAAATAG
1 TTTTTAATTTAA-ATTTTAAATAG
*
64819177 TTTTTTATTTAAATTTTAAAT
1 TTTTTAATTTAAATTTTAAAT
64819198 TTAGACAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (23 bp):
TTTTTAATTTAAATTTTAAATAG
Found at i:64821851 original size:19 final size:18
Alignment explanation
Indices: 64821804--64821843 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 18
64821794 AAGCACTTGT
64821804 TTTAATGTGTAAAAAAATG
1 TTTAAT-TGTAAAAAAATG
*
64821823 TTTCATTGTAAAAGAAATG
1 TTTAATTGTAAAA-AAATG
64821842 TT
1 TT
64821844 AATATGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (18 bp):
TTTAATTGTAAAAAAATG
Found at i:64822279 original size:51 final size:49
Alignment explanation
Indices: 64822224--64822329 Score: 115
Period size: 49 Copynumber: 2.1 Consensus size: 49
64822214 GTCCTTAAAG
* * *
64822224 TTTACAAATTCTATCAATTTGGTCTTGATTTAACAAATTTAGCCC-CAAACA
1 TTTACAAACTCTACCAATTTGG--TTGATTTAACAAATTTAACCCGC-AACA
* ** *
64822275 TTTACACACTCTACCGTTTTGGTTGGTTTAACAAATTTAACCCGCAACA
1 TTTACAAACTCTACCAATTTGGTTGATTTAACAAATTTAACCCGCAACA
64822324 TTTACA
1 TTTACA
64822330 CATTTTGTTA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
49 29 0.62
50 1 0.02
51 17 0.36
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (49 bp):
TTTACAAACTCTACCAATTTGGTTGATTTAACAAATTTAACCCGCAACA
Found at i:64827199 original size:16 final size:16
Alignment explanation
Indices: 64827167--64827199 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
64827157 AATTAAGATA
64827167 ATTAAGAAAATAAATT
1 ATTAAGAAAATAAATT
64827183 ATTAA-AAAATAATATT
1 ATTAAGAAAATAA-ATT
64827199 A
1 A
64827200 AAAATCTGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (16 bp):
ATTAAGAAAATAAATT
Found at i:64828903 original size:16 final size:18
Alignment explanation
Indices: 64828871--64828904 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
64828861 AATTCTTTGA
64828871 AAGTAATTTATTATCAAT
1 AAGTAATTTATTATCAAT
64828889 AAGTAA-TTA-TATCAAT
1 AAGTAATTTATTATCAAT
64828905 TGTAATAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 3 0.19
18 6 0.38
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (18 bp):
AAGTAATTTATTATCAAT
Found at i:64831400 original size:91 final size:93
Alignment explanation
Indices: 64831204--64831616 Score: 385
Period size: 94 Copynumber: 4.4 Consensus size: 93
64831194 TTGTTGGGTC
* ** * * * * *
64831204 AAATTATGATTTTGGTCCTTTTACTATGCTCAAATTTGAATATATAGTAAGCAAAACAAG-TTAA
1 AAATTATGATTTTGGTCCCTCAACTATGCTC-AATTTGGATGTATAATAAGAAAAACGAGTTTAA
* * * * *
64831268 TACTAAAGAAATTAAACAAGGTTTTTGGTT
65 -AGTGATGAAACTAAACAAGTTTTTTGGTT
* * * * * *
64831298 AAATTTTGATTTTAGTCCGTCTATTATGCTCTAATTTGGATGTA-AA-AAAAAAAACGAGTTTAA
1 AAATTATGATTTTGGTCCCTCAACTATGCTC-AATTTGGATGTATAATAAGAAAAACGAGTTTAA
*
64831361 AGTGATGAAATTAAACAA-TTTTTTGGTT
65 AGTGATGAAACTAAACAAGTTTTTTGGTT
*
64831389 AAATTATGATTTTGGTCCCTCAACTATGCTC---TTCGATGTATAATAAGAAAAACGAG-TTAAA
1 AAATTATGATTTTGGTCCCTCAACTATGCTCAATTTGGATGTATAATAAGAAAAACGAGTTTAAA
*
64831450 ATGATG-AACTAAACAAGTTTTTGTGTGTT
66 GTGATGAAACTAAACAAGTTTTT-TG-GTT
* * * * * *
64831479 AAATTGTGGTTTTGGTCCCACTACTATGCTCAAATTTGGATTTATAATAAGAAAAACGAGTTAAA
1 AAATTATGATTTTGGTCCCTCAACTATGCTC-AATTTGGATGTATAATAAGAAAAACGAGTTTAA
* *
64831544 AGTGATCAAACTAAAGAAGGTTTTTCTTTGGTT
65 AGTGATGAAACTAAACAA-G--TTT-TTTGGTT
*
64831577 AAATTCTGATTTTGGTCCCTCAACTATGCTCAAGTTTGGA
1 AAATTATGATTTTGGTCCCTCAACTATGCTCAA-TTTGGA
64831617 ATTTAACCTT
Statistics
Matches: 263, Mismatches: 39, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
87 17 0.06
88 17 0.06
89 13 0.05
90 30 0.11
91 35 0.13
92 24 0.09
93 5 0.02
94 59 0.22
95 8 0.03
96 9 0.03
97 3 0.01
98 36 0.14
99 5 0.02
100 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (93 bp):
AAATTATGATTTTGGTCCCTCAACTATGCTCAATTTGGATGTATAATAAGAAAAACGAGTTTAAA
GTGATGAAACTAAACAAGTTTTTTGGTT
Found at i:64831493 original size:90 final size:90
Alignment explanation
Indices: 64831280--64831608 Score: 310
Period size: 91 Copynumber: 3.6 Consensus size: 90
64831270 CTAAAGAAAT
* * * * * * *
64831280 TAAACAAGGTTTTTG-GTTAAATTTTGATTTTAGTCCGTCTATTATGCTCTAATTTGGATGTA-A
1 TAAACAAGTTTTTTGTGTTAAATTATGATTTTGGTCCCTCAACTATGCTC--A-TTCGATGTATA
* * *
64831343 A-AAAAAAAACGAGTTTAAAGTGATGAAAT
63 ATAAGAAAAACGAG-TTAAAATGATG-AAC
64831372 TAAACAA-TTTTTTG-GTTAAATTATGATTTTGGTCCCTCAACTATGCTC-TTCGATGTATAATA
1 TAAACAAGTTTTTTGTGTTAAATTATGATTTTGGTCCCTCAACTATGCTCATTCGATGTATAATA
64831434 AGAAAAACGAGTTAAAATGATGAAC
66 AGAAAAACGAGTTAAAATGATGAAC
* * * * * *
64831459 TAAACAAGTTTTTGTGTGTTAAATTGTGGTTTTGGTCCCACTACTATGCTCAAATTTGGATTTAT
1 TAAACAAGTTTTT-TGTGTTAAATTATGATTTTGGTCCCTCAACTATGCTC--A-TTCGATGTAT
*
64831524 AATAAGAAAAACGAGTTAAAAGTGATCAAAC
62 AATAAGAAAAACGAGTTAAAA-TGAT-GAAC
* * *
64831555 TAAAGAAGGTTTTTCTTTGGTTAAATTCTGATTTTGGTCCCTCAACTATGCTCA
1 TAAACAA-GTTTTT-TGT-GTTAAATTATGATTTTGGTCCCTCAACTATGCTCA
64831609 AGTTTGGAAT
Statistics
Matches: 200, Mismatches: 24, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
87 17 0.09
88 17 0.09
89 13 0.06
90 30 0.15
91 35 0.17
92 7 0.04
94 29 0.14
95 4 0.02
96 10 0.05
97 8 0.04
98 30 0.15
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (90 bp):
TAAACAAGTTTTTTGTGTTAAATTATGATTTTGGTCCCTCAACTATGCTCATTCGATGTATAATA
AGAAAAACGAGTTAAAATGATGAAC
Found at i:64838570 original size:9 final size:9
Alignment explanation
Indices: 64838556--64838585 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
64838546 TAAAAAGGTC
64838556 TTTCTTTCT
1 TTTCTTTCT
*
64838565 TTTCTTTTT
1 TTTCTTTCT
64838574 TTTCTTTCT
1 TTTCTTTCT
64838583 TTT
1 TTT
64838586 TTTAGTGACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
TTTCTTTCT
Found at i:64838581 original size:13 final size:14
Alignment explanation
Indices: 64838560--64838588 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
64838550 AAGGTCTTTC
64838560 TTTCTTTTCTTTTT
1 TTTCTTTTCTTTTT
64838574 TTTC-TTTCTTTTT
1 TTTCTTTTCTTTTT
64838587 TT
1 TT
64838589 AGTGACAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTCTTTTCTTTTT
Found at i:64841494 original size:21 final size:21
Alignment explanation
Indices: 64841470--64841509 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64841460 TATTTCTTGC
**
64841470 TATTTTCTTTTTATTTTTTAT
1 TATTTTCTTACTATTTTTTAT
64841491 TATTTTCTTACTATTTTTT
1 TATTTTCTTACTATTTTTT
64841510 CCGTTGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (21 bp):
TATTTTCTTACTATTTTTTAT
Found at i:64853966 original size:20 final size:19
Alignment explanation
Indices: 64853925--64853966 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
64853915 TTATTTAAAT
*
64853925 AAATTATTAAAAATACATA
1 AAATTATTAAAAATACAAA
*
64853944 AAATTATTTAAAAATAGAAA
1 AAATTA-TTAAAAATACAAA
64853964 AAA
1 AAA
64853967 ACCCAATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
AAATTATTAAAAATACAAA
Found at i:64855342 original size:15 final size:15
Alignment explanation
Indices: 64855287--64855343 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
64855277 TTTATACTAC
64855287 AAAATATTTATTATT
1 AAAATATTTATTATT
** *
64855302 ACTATATTTATAACTGT
1 AAAATATTTATTA-T-T
64855319 AATAAATATTTATTATT
1 -A-AAATATTTATTATT
64855336 AAAATATT
1 AAAATATT
64855344 AATATTGATA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
15 17 0.53
16 2 0.06
17 2 0.06
18 2 0.06
19 9 0.28
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.49
Consensus pattern (15 bp):
AAAATATTTATTATT
Found at i:64855384 original size:16 final size:17
Alignment explanation
Indices: 64855365--64855401 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
64855355 TTTTGAATAA
64855365 TATTATTTAAAA-TTAT
1 TATTATTTAAAATTTAT
64855381 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
64855397 TATTA
1 TATTA
64855402 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:64858942 original size:30 final size:30
Alignment explanation
Indices: 64858906--64858971 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
64858896 CAGTTGGACA
* ** *
64858906 TAAATTTTGAAATCTAAAAAGTAGAGAGAC
1 TAAATTTTCAAAAATAAAAAATAGAGAGAC
*
64858936 TAAATTTTCAAAAATAAAAAATATAGAGAC
1 TAAATTTTCAAAAATAAAAAATAGAGAGAC
64858966 TAAATT
1 TAAATT
64858972 CTAAATTTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.55, C:0.06, G:0.11, T:0.29
Consensus pattern (30 bp):
TAAATTTTCAAAAATAAAAAATAGAGAGAC
Found at i:64865318 original size:179 final size:176
Alignment explanation
Indices: 64864973--64865357 Score: 540
Period size: 179 Copynumber: 2.1 Consensus size: 176
64864963 AGGATATGAT
64864973 CCTCCAAGAGCATGCATGTATATATGTGTTTATGTATGCCATTTGGATTTTGTATGATTCCCTTG
1 CCTCCAA-AGCATGCATGTATATATGTGTTTATGTATGCCATTTGGATTTTGTATGATTCCCTTG
* * *
64865038 TTAATGTCATTCCCTTGTGTTAATGTGTTTATCTTTTGTCAATGCATGCATGCCTGCATGTCATT
65 TTAATGTCATTACCTTGTGTTAATGTGTTCATCTTTTGTCAATGCATGCATGCATGCATGTCATT
* *
64865103 TGGTTTTTATGGATTTTCTATGGTTCCCGGGATATGATTCTCCAAGAAC
130 TGGTTTTTATGGACTTTCTATGGTT-CC-GGATATGATCCTCCAAGAAC
* *
64865152 CCTCCAAATGCATGCATGTATATATGTGTTTATGTATGTCATTTGGATTTTGTATGGTTCCCTTG
1 CCTCCAAA-GCATGCATGTATATATGTGTTTATGTATGCCATTTGGATTTTGTATGATTCCCTTG
* * * *
64865217 TTAATGTTATTACCTTGTGTTATTGTGTTCATCTTTTGTCAATGTATGTATGTATGCATGCATGT
65 TTAATGTCATTACCTTGTGTTAATGTGTTCATCTTTTGTC-A---ATGCATGCATGCATGCATGT
* *
64865282 CATTTGTTTTTTATGGACTTTGTATGGTT-C-GATATGATCCTCCAAGAAC
126 CATTTGGTTTTTATGGACTTTCTATGGTTCCGGATATGATCCTCCAAGAAC
* *
64865331 CCTCCAAAAGCATGCATGCATGTATGT
1 CCTCC-AAAGCATGCATGTATATATGT
64865358 ATATATGTGT
Statistics
Matches: 185, Mismatches: 15, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
178 1 0.01
179 136 0.74
180 4 0.02
181 1 0.01
183 43 0.23
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.43
Consensus pattern (176 bp):
CCTCCAAAGCATGCATGTATATATGTGTTTATGTATGCCATTTGGATTTTGTATGATTCCCTTGT
TAATGTCATTACCTTGTGTTAATGTGTTCATCTTTTGTCAATGCATGCATGCATGCATGTCATTT
GGTTTTTATGGACTTTCTATGGTTCCGGATATGATCCTCCAAGAAC
Found at i:64866194 original size:24 final size:24
Alignment explanation
Indices: 64866167--64866225 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
64866157 TTGATTGAAA
64866167 TTGGTGCTAAAAAATTTGGGATTT
1 TTGGTGCTAAAAAATTTGGGATTT
64866191 TTGGTGCTAAAAAATTTGGGATTT
1 TTGGTGCTAAAAAATTTGGGATTT
64866215 TTGGTGCTAAA
1 TTGGTGCTAAA
64866226 GTGGTGACCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.29, C:0.05, G:0.25, T:0.41
Consensus pattern (24 bp):
TTGGTGCTAAAAAATTTGGGATTT
Found at i:64876949 original size:18 final size:20
Alignment explanation
Indices: 64876926--64876967 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
64876916 AATTATTTTC
64876926 ATTATTTTA-AATATAA-AA
1 ATTATTTTATAATATAATAA
*
64876944 ATTATTTTATATTATAATAA
1 ATTATTTTATAATATAATAA
64876964 ATTA
1 ATTA
64876968 AAATTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.43
19 6 0.29
20 6 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTATTTTATAATATAATAA
Found at i:64876969 original size:27 final size:27
Alignment explanation
Indices: 64876916--64876970 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
64876906 ATCAATTTTG
**
64876916 AATTATTTTCATTATTTTAAATATAAA
1 AATTATTTTCATTATAATAAATATAAA
*
64876943 AATTATTTTATATTATAATAAAT-TAAA
1 AATTATTTT-CATTATAATAAATATAAA
64876970 A
1 A
64876971 TTAATTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (27 bp):
AATTATTTTCATTATAATAAATATAAA
Found at i:64885971 original size:25 final size:27
Alignment explanation
Indices: 64885939--64885996 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
64885929 ATTTTTGAAA
*
64885939 TTTTTTAGAATTT-AA-ATAATAATTT
1 TTTTTTAGAATTTAAATATAAGAATTT
64885964 TTTTTTAGAATTTAGAATATAAGAATTT
1 TTTTTTAGAATTTA-AATATAAGAATTT
64885992 TTTTT
1 TTTTT
64885997 ACCATAACCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 13 0.45
27 2 0.07
28 14 0.48
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (27 bp):
TTTTTTAGAATTTAAATATAAGAATTT
Found at i:64889500 original size:31 final size:29
Alignment explanation
Indices: 64889397--64889496 Score: 87
Period size: 31 Copynumber: 3.4 Consensus size: 29
64889387 TAAACCCTTC
* *
64889397 AAATTTT-GAATTTTTACTTAAATCC-CA
1 AAATTTTAAAATTTTTAATTAAATCCTCA
* * *
64889424 AAATTTTTAAAATTTCTAAATAAACCCTACA
1 AAA-TTTTAAAATTTTTAATTAAATCCT-CA
* *
64889455 AAAGTTTTGAAATTTTTAATTAAATCCTTTA
1 AAA-TTTTAAAATTTTTAATTAAATCC-TCA
64889486 AAATTTTAAAA
1 AAATTTTAAAA
64889497 ATTTCTCAGT
Statistics
Matches: 56, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
27 3 0.05
28 4 0.07
29 13 0.23
30 7 0.12
31 28 0.50
32 1 0.02
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.42
Consensus pattern (29 bp):
AAATTTTAAAATTTTTAATTAAATCCTCA
Done.