Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 210 of 211
Found at i:65260044 original size:31 final size:29
Alignment explanation
Indices: 65260009--65260081 Score: 87
Period size: 31 Copynumber: 2.5 Consensus size: 29
65259999 TCAATTTTAA
*
65260009 TATTTAATATTTTTTATAATTTGTTTTGAAT
1 TATTTAATATTTTTTATAATTT-TTCTG-AT
*
65260040 TATTTTAT-TTTATTTATAATTTTTCTGAT
1 TATTTAATATTT-TTTATAATTTTTCTGAT
65260069 T-TTTAATATTTTT
1 TATTTAATATTTTT
65260082 ATGAGAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
28 7 0.19
29 6 0.16
30 7 0.19
31 17 0.46
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.68
Consensus pattern (29 bp):
TATTTAATATTTTTTATAATTTTTCTGAT
Found at i:65260311 original size:5 final size:5
Alignment explanation
Indices: 65260301--65260352 Score: 104
Period size: 5 Copynumber: 10.4 Consensus size: 5
65260291 CATATAAACC
65260301 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
65260351 TA
1 TA
65260353 ACTTGTGACA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:65260753 original size:3 final size:3
Alignment explanation
Indices: 65260745--65260783 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
65260735 TAAAATAACC
*
65260745 GCT GCT GCT GCT GCT GCT ACT GCT GCT GCT GCT GCT GCT
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT
65260784 ATAATCCAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.03, C:0.33, G:0.31, T:0.33
Consensus pattern (3 bp):
GCT
Found at i:65261812 original size:22 final size:23
Alignment explanation
Indices: 65261787--65261836 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
65261777 AATTTTAATT
65261787 TTTTATTATTCAAA-AATA-AATA
1 TTTTA-TATTCAAATAATAGAATA
*
65261809 TTTTATATTTAAATAATAGAATA
1 TTTTATATTCAAATAATAGAATA
*
65261832 ATTTA
1 TTTTA
65261837 AAAACTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 9 0.38
23 8 0.33
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTTTATATTCAAATAATAGAATA
Found at i:65261982 original size:13 final size:13
Alignment explanation
Indices: 65261964--65262010 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
65261954 AAAGCTTGCC
*
65261964 AAAATAAATCTAA
1 AAAATAAATATAA
*
65261977 AAAATAAAAATAA
1 AAAATAAATATAA
* *
65261990 AAAATTAATATGA
1 AAAATAAATATAA
65262003 AAAATAAA
1 AAAATAAA
65262011 AAATCAAATC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (13 bp):
AAAATAAATATAA
Found at i:65263575 original size:17 final size:17
Alignment explanation
Indices: 65263542--65263575 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
65263532 TTTTATTTAT
* *
65263542 CAAAATAATACAAAAAA
1 CAAAAAAATAAAAAAAA
65263559 CAAAAAAATAAAAAAAA
1 CAAAAAAATAAAAAAAA
65263576 GCTATTGGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.82, C:0.09, G:0.00, T:0.09
Consensus pattern (17 bp):
CAAAAAAATAAAAAAAA
Found at i:65263686 original size:10 final size:10
Alignment explanation
Indices: 65263671--65263733 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 10
65263661 AGGAGAAGAA
65263671 AAAAAGAAAG
1 AAAAAGAAAG
65263681 AAAAAGAAAG
1 AAAAAGAAAG
*
65263691 AAAGA-AAAG
1 AAAAAGAAAG
* * *
65263700 GAAAGGAGA-
1 AAAAAGAAAG
65263709 AAAAAGAAAG
1 AAAAAGAAAG
65263719 AGAAAA-AGAAG
1 A-AAAAGA-AAG
65263730 AAAA
1 AAAA
65263734 TGTAATTTTT
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
9 12 0.29
10 21 0.51
11 8 0.20
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:65263690 original size:14 final size:14
Alignment explanation
Indices: 65263669--65263732 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 14
65263659 AAAGGAGAAG
65263669 AAAA-AAAGAAAGA
1 AAAAGAAAGAAAGA
65263682 AAAAGAAAGAAAGA
1 AAAAGAAAGAAAGA
* *
65263696 AAAGGAAAG-GAGAA
1 AAAAGAAAGAAAG-A
65263710 AAAAGAAAG--AGA
1 AAAAGAAAGAAAGA
65263722 AAAAG-AAGAAA
1 AAAAGAAAGAAA
65263733 ATGTAATTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
11 3 0.07
12 6 0.14
13 9 0.20
14 26 0.59
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (14 bp):
AAAAGAAAGAAAGA
Found at i:65264401 original size:154 final size:155
Alignment explanation
Indices: 65264037--65264493 Score: 496
Period size: 152 Copynumber: 3.0 Consensus size: 155
65264027 AAAAATTGTA
* *
65264037 TATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATTAGA
1 TATTT-AAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
65264102 AAATTAGAAAATAGTATA-TTTT-TTAAAGTAATAAAATGTAGAGAAAATAATACGAACAAAATG
65 AAATTAGAAAATAGTATATTTTTATTAAAGTAATAAAATGTAGAGAAAATAATACGAACAAAATG
*
65264165 CCAAAGTAAGGGTTTTTTACTAAATT
130 CCAAAATAAGGGTTTTTTACTAAATT
** * * * * *
65264191 T-TAAAAAAAAAGAATTAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
1 TATTTAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
* * * **
65264255 AA-TACGAAAATAATATATTTTTATTGAAAGTAATAAAAT-TTGGGAAAA-AATACG-AGTAAAT
66 AATTA-GAAAATAGTATATTTTTATT-AAAGTAATAAAATGTAGAGAAAATAATACGAACAAAAT
* * **
65264316 GGCAGAAATGA-GGTTTTTGTTTTAAATT
129 GCCA-AAATAAGGGTTTTT-TACTAAATT
*
65264344 TATTTAAAAACACACTAAATTAATAAATTTCAAACAGT-GTGTACTAAAATAATGTAAAATAATA
1 TATTTAAAAACACACTAAATTAATAAATTTCAAACA-TAATGTACTAAAATAATGTAAAATAATA
* * * **
65264408 AAATTAGAAAATAG--TA-TTTT-TTAAA-TAATAAAAT-TCG-GAAAAAAAATATGAACAAAGG
65 AAATTAGAAAATAGTATATTTTTATTAAAGTAATAAAATGTAGAG-AAAATAATACGAACAAAAT
* *
65264466 GCCGAAATAATGGTTTTTTACTAAATT
129 GCCAAAATAAGGGTTTTTTACTAAATT
65264493 T
1 T
65264494 TTTTTTGAAG
Statistics
Matches: 251, Mismatches: 39, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
147 1 0.00
148 15 0.06
149 21 0.08
150 14 0.06
151 6 0.02
152 83 0.33
153 23 0.09
154 72 0.29
155 16 0.06
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (155 bp):
TATTTAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
AATTAGAAAATAGTATATTTTTATTAAAGTAATAAAATGTAGAGAAAATAATACGAACAAAATGC
CAAAATAAGGGTTTTTTACTAAATT
Found at i:65268890 original size:242 final size:234
Alignment explanation
Indices: 65268431--65268899 Score: 521
Period size: 248 Copynumber: 1.9 Consensus size: 234
65268421 TTCAAAATCT
* * *
65268431 TATATATATGAACTAGAAGATCAAACATCACCAGAACTCCTTCACTATGTATGCACTATGAACTT
1 TATATATATGAACTAGAAGATCAAACATCACCAGAACTCCATCACTATGCATGAACTATGAACTT
* * * * **
65268496 ACGATTGTTATATTTTGCTACTAAAATCTACACCTGAAATAAATTACAGTTTCATTTCAAATTTT
66 ACCACTGTTATATTTTACTACTAAAATCTACACCTGAAATAAATTACAGTTTCATTCCAAATTCA
* *
65268561 AAACTTTCTCAAATTTCCGTTCAAACTTTCATATGATACTAATCAAGTTAAAAAATTAGCCAAAA
131 AAACTTTCTCAAATTTCCATTCAAACTCTCATATGATACTAATCAAGTT-AAAAATTAGCCAAAA
*
65268626 AACTTCAAAATATTATATATTATGTGTGTGTGTGTGTATATA
195 AAC-ACAAAATA-TATATATTATGTGTGTGTGTGTGTATATA
* * * * *
65268668 TATATATATGACCTAGAAGATCAATAAAACATCACTAGCACTTCATCACTATGCATGAATTATGA
1 TATATATATGAACTAGAAGATC----AAACATCACCAGAACTCCATCACTATGCATGAACTATGA
*
65268733 ACTTAACCACTGTTATATTTTACTACTAAAATCTACACCTGAACCTCATATAAATTACAGTTTTA
62 ACTT-ACCACTGTTATATTTTACTACTAAAATCTACACCTG-A----A-ATAAATTACAGTTTCA
*
65268798 TTCCAAGTTCAAAAC-TTCTCAAATAGGTTCCATTCAAACTCTCATATGATA-TCAATCAAGTT-
120 TTCCAAATTCAAAACTTTCTCAAAT---TTCCATTCAAACTCTCATATGATACT-AATCAAGTTA
* * *
65268860 AAATTTAGCAAAAGAAACAGAAAAATATTATATATATATG
181 AAAATTAGCCAAA-AAACA-CAAAATA-TATATAT-TATG
65268900 AACTAGTAGA
Statistics
Matches: 192, Mismatches: 22, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
237 21 0.11
241 36 0.19
242 33 0.17
243 1 0.01
247 10 0.05
248 37 0.19
249 19 0.10
250 35 0.18
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (234 bp):
TATATATATGAACTAGAAGATCAAACATCACCAGAACTCCATCACTATGCATGAACTATGAACTT
ACCACTGTTATATTTTACTACTAAAATCTACACCTGAAATAAATTACAGTTTCATTCCAAATTCA
AAACTTTCTCAAATTTCCATTCAAACTCTCATATGATACTAATCAAGTTAAAAATTAGCCAAAAA
ACACAAAATATATATATTATGTGTGTGTGTGTGTATATA
Found at i:65270552 original size:9 final size:9
Alignment explanation
Indices: 65270540--65270602 Score: 54
Period size: 10 Copynumber: 6.6 Consensus size: 9
65270530 TTTTATGATT
65270540 TTTTTATAA
1 TTTTTATAA
65270549 TTTTTATAA
1 TTTTTATAA
*
65270558 GTTTATATCAA
1 -TTTTTAT-AA
* *
65270569 TTTTAATATT
1 TTTTTATA-A
65270579 TTTTTCATAA
1 TTTTT-ATAA
*
65270589 TTTTTACAA
1 TTTTTATAA
65270598 TTTTT
1 TTTTT
65270603 TTTATTATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
9 18 0.42
10 20 0.47
11 5 0.12
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:65270554 original size:20 final size:19
Alignment explanation
Indices: 65270529--65270615 Score: 75
Period size: 20 Copynumber: 4.3 Consensus size: 19
65270519 CTAATTCAAG
65270529 TTTTTATGATTTTTTTATAA
1 TTTTTAT-ATTTTTTTATAA
** *
65270549 TTTTTATAAGTTTATATCAA
1 TTTTTATATTTTTTTAT-AA
*
65270569 TTTTAATATTTTTTTCATAA
1 TTTTTATATTTTTTT-ATAA
* *
65270589 TTTTTACAATTTTTTTTATTA
1 TTTTTA-TA-TTTTTTTATAA
65270610 TTTTTA
1 TTTTTA
65270616 AAGTATTATG
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
19 7 0.13
20 27 0.51
21 12 0.23
22 7 0.13
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTTTATATTTTTTTATAA
Found at i:65270600 original size:21 final size:21
Alignment explanation
Indices: 65270576--65270615 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
65270566 CAATTTTAAT
65270576 ATTTTTTTCATAATTTTTACA
1 ATTTTTTTCATAATTTTTACA
* *
65270597 ATTTTTTTTATTATTTTTA
1 ATTTTTTTCATAATTTTTA
65270616 AAGTATTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTTTTTCATAATTTTTACA
Found at i:65270777 original size:31 final size:29
Alignment explanation
Indices: 65270735--65270816 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 29
65270725 CTTTACATCA
65270735 ATTTTAA-TATTTAATGTTTTTTATAATTT
1 ATTTTAATTATTTAAT-TTTTTTATAATTT
*
65270764 ATTTTGAATTATTTTATTTTATTTATAATTT
1 ATTTT-AATTATTTAATTTT-TTTATAATTT
65270795 -TTTT-ATT-TTTAATATTTTTTAT
1 ATTTTAATTATTTAAT-TTTTTTAT
65270817 GAGAATATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
27 10 0.21
28 6 0.13
29 5 0.11
30 9 0.19
31 17 0.36
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (29 bp):
ATTTTAATTATTTAATTTTTTTATAATTT
Found at i:65270786 original size:20 final size:20
Alignment explanation
Indices: 65270761--65270803 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
65270751 TTTTTTATAA
65270761 TTTATTT-TGAATTATTTTAT
1 TTTATTTAT-AATTATTTTAT
*
65270781 TTTATTTATAATTTTTTTAT
1 TTTATTTATAATTATTTTAT
65270801 TTT
1 TTT
65270804 TAATATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTATTTATAATTATTTTAT
Found at i:65270798 original size:15 final size:16
Alignment explanation
Indices: 65270754--65270816 Score: 62
Period size: 15 Copynumber: 4.1 Consensus size: 16
65270744 TTTAATGTTT
65270754 TTTATAATTTATTTTGA
1 TTTATAATTTATTTT-A
*
65270771 ATTAT--TTTATTTTA
1 TTTATAATTTATTTTA
65270785 TTTATAATTT-TTTTA
1 TTTATAATTTATTTTA
*
65270800 TTTTTAATATT-TTTTA
1 TTTATAAT-TTATTTTA
65270816 T
1 T
65270817 GAGAATATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
14 5 0.12
15 20 0.50
16 11 0.28
17 4 0.10
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTATAATTTATTTTA
Found at i:65271050 original size:5 final size:5
Alignment explanation
Indices: 65271033--65271093 Score: 106
Period size: 5 Copynumber: 12.4 Consensus size: 5
65271023 CATATAAACC
*
65271033 TATTA TA-TA TATTA TATTA TATTA TGTTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
65271082 TATTA TATTA TA
1 TATTA TATTA TA
65271094 ACTTGTGACA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
4 4 0.08
5 49 0.92
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:65275084 original size:38 final size:38
Alignment explanation
Indices: 65275033--65275109 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
65275023 AAAACTACAA
65275033 GAGATTCTCAAATGTCAGTTTTTTAATAAATGCCAAAT
1 GAGATTCTCAAATGTCAGTTTTTTAATAAATGCCAAAT
65275071 GAGATTCTCAAATGTCAGTTTTTTAATAAATGCCAAAT
1 GAGATTCTCAAATGTCAGTTTTTTAATAAATGCCAAAT
65275109 G
1 G
65275110 CTAATGACAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (38 bp):
GAGATTCTCAAATGTCAGTTTTTTAATAAATGCCAAAT
Found at i:65288335 original size:154 final size:152
Alignment explanation
Indices: 65288158--65288767 Score: 918
Period size: 154 Copynumber: 4.0 Consensus size: 152
65288148 TTTTTTATTG
* * *
65288158 AAAGTGATAAAATCCGGTA-AAAAAATATGAACAAATGGCCGAAATAAGGGTTTTTTTTTTAAAT
1 AAAGTAATAAAATCCGG-AGAAAAAATACGAACAAAGGGCCGAAATAAGGG---TTTTTTTAAAT
65288222 TTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAT
62 TTATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAT
65288287 AAAATTAGAAAATAGTATATTTTTT-
127 AAAATTAGAAAATAGTATATTTTTTA
65288312 AAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTATTTTTTAAATT
1 AAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGCCGAAATAAGGG--T-TTTTTTAAATT
*
65288377 TATTTAAAAAACTCACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
63 TATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
65288442 AAATTAGAAAATAGTATATTTTTTA
128 AAATTAGAAAATAGTATATTTTTTA
* *
65288467 AAAGTAATAAAATTCGGAG-AAAAATACGAACAAAGGGCGGAAATAAGGG-TTTTTTAAATTTAT
1 AAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTAT
* *
65288530 TT-AAAAA-ACA-TAAATCAATATATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
66 TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
* *
65288592 -TACGAAAATATTATATTTTTATTG
131 TTA-GAAAATAGTATA-TTTT-TTA
*
65288616 AAAGTAATAAAATCC-G-GAAAAAATACGAACAAAGGGACGAAATAAGGGTTTTTTT-AATTTAT
1 AAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTAT
* *
65288678 TTAAAAAACGCACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATTATAAAA
66 TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
* *
65288743 TTATAAAATAGTATTTTTTTTA
131 TTAGAAAATAGTATATTTTTTA
65288765 AAA
1 AAA
65288768 ATGTATTCAT
Statistics
Matches: 422, Mismatches: 22, Indels: 29
0.89 0.05 0.06
Matches are distributed among these distances:
146 2 0.00
147 62 0.15
148 44 0.10
149 37 0.09
150 22 0.05
151 58 0.14
152 2 0.00
153 4 0.01
154 173 0.41
155 18 0.04
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (152 bp):
AAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTAT
TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
TTAGAAAATAGTATATTTTTTA
Found at i:65288729 original size:298 final size:305
Alignment explanation
Indices: 65288158--65288767 Score: 945
Period size: 298 Copynumber: 2.0 Consensus size: 305
65288148 TTTTTTATTG
* * *
65288158 AAAGTGATAAAATCCGGTAAAAAAATATGAACAAATGGCCGAAATAAGGGTTTTTTTTTTAAATT
1 AAAGTAATAAAATCCGGTAAAAAAATACGAACAAAGGGCCGAAATAAGGG---TTTTTTTAAATT
*
65288223 TATTTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
63 TATTTAAAAAACACACTAAATCAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
*
65288288 AAATTAGAAAATAGTATATTTTTTAAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGCCG
128 AAATTAGAAAATAGTATATTTTTTAAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGACG
*
65288353 AAATAAGGGTTTATTTTTTAAATTTATTTAAAAAACTCACTAAATGAATACATTTCAAACATAAT
193 AAATAAGGG-TTATTTTTTAAATTTATTTAAAAAACGCACTAAATGAATACATTTCAAACATAAT
65288418 GTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTA
257 GTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTA
* * *
65288467 AAAGTAATAAAATTCGG-AGAAAAATACGAACAAAGGGCGGAAATAAGGG-TTTTTTAAATTTAT
1 AAAGTAATAAAATCCGGTAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTAT
*
65288530 TT-AAAAA-ACA-TAAATCAATATATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
66 TTAAAAAACACACTAAATCAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
*
65288592 -TACGAAAATATTATATTTTTATTGAAAGTAATAAAATCC-G-GAAAAAATACGAACAAAGGGAC
131 TTA-GAAAATAGTATA-TTTT-TT-AAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGAC
65288654 GAAATAAGGG-T-TTTTTT-AATTTATTTAAAAAACGCACTAAATGAATACATTTCAAACATAAT
192 GAAATAAGGGTTATTTTTTAAATTTATTTAAAAAACGCACTAAATGAATACATTTCAAACATAAT
* * *
65288716 GTACTAAAATAATGTAAAATTATAAAATTATAAAATAGTATTTTTTTTA
257 GTACTAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTA
65288765 AAA
1 AAA
65288768 ATGTATTCAT
Statistics
Matches: 283, Mismatches: 14, Indels: 19
0.90 0.04 0.06
Matches are distributed among these distances:
298 93 0.33
299 6 0.02
300 3 0.01
301 61 0.22
302 38 0.13
303 8 0.03
304 31 0.11
308 28 0.10
309 15 0.05
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (305 bp):
AAAGTAATAAAATCCGGTAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTAAATTTAT
TTAAAAAACACACTAAATCAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
TTAGAAAATAGTATATTTTTTAAAGTAATAAAATCCGGAGAAAAAATACGAACAAAGGGACGAAA
TAAGGGTTATTTTTTAAATTTATTTAAAAAACGCACTAAATGAATACATTTCAAACATAATGTAC
TAAAATAATGTAAAATAATAAAATTAGAAAATAGTATATTTTTTA
Found at i:65289347 original size:157 final size:155
Alignment explanation
Indices: 65288766--65289478 Score: 1058
Period size: 149 Copynumber: 4.7 Consensus size: 155
65288756 TTTTTTTTAA
* ** *
65288766 AAATGTATTCATTTAGTGTGTTTTTTAAATAAATTT-AAAAAAATTCTTATTTCGACCCTTTGTT
1 AAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTT
**
65288830 CGTATTTTTTT-CCGGATTTTATTACTTTCAATAAAAATATGTTATTTTC-ATATTTTATTATTT
66 CGTATTTTTTTCCCGGATTTTATTACTTTCAATAAAAATATACTATTTTCTA-ATTTTATTATTT
65288893 TACATTATTTTAGTACATTATGTTTG
130 TACATTATTTTAGTACATTATGTTTG
* *
65288919 AAATGTATTAATTTACTGTGTTTTTTAAATAAATTT-AAAAAAATCCTTATTTCGGCCC--T-TT
1 AAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTT
* *
65288980 -GT-TTTTTTTCTCAGATTTTATTACTTTCAATAAAAATATACTATTTTCTAATTTTATTATTTT
66 CGTATTTTTTTCCCGGATTTTATTACTTTCAATAAAAATATACTATTTTCTAATTTTATTATTTT
*
65289043 ACATTATTCTAGTACATTATGTTTG
131 ACATTATTTTAGTACATTATGTTTG
* *
65289068 AAATGTATTCATTTAGTGTGTTTTTTAAATAAA-TTAAAAAAAACCCTTATTTCGGCCTTTTGTT
1 AAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTT
* *
65289132 CGTATTTTTTTTCCGGATTTTATTACTTTCAATAAAAATATACTATTTT-TGTATTTTATTATTT
66 CGTATTTTTTTCCCGGATTTTATTACTTTCAATAAAAATATACTATTTTCT-AATTTTATTATTT
*
65289196 TACATTGTTTTAGTACATTATGTTTG
130 TACATTATTTTAGTACATTATGTTTG
* *
65289222 AAATGTATTAATTTACTGTGTTTTTTAAATAAATTTTTAAAAAAAACCCTTATTTCGGCCATTTG
1 AAATGTATTAATTTAGTGTGTTTTTTAAATAAA--TTTAAAAAAAACCCTTATTTCGGCCCTTTG
* *
65289287 TTCATATTTTTTTCCCTGGATTTTATTACTTT-AAAAAAAATATACTATTTTCTAATTTTATTAT
64 TTCGTATTTTTTTCCC-GGATTTTATTACTTTCAATAAAAATATACTATTTTCTAATTTTATTAT
65289351 TTTACATTATTTTAGTACATTATGTTTG
128 TTTACATTATTTTAGTACATTATGTTTG
* *
65289379 AAATGTATTAATTTAGTGTG-TTTTTAAATAAATTTAAGAAAAA-CCTTATTTCGTCCCTTTGTT
1 AAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTT
** *
65289442 CGTATTTTTTTATCGAATTTTATTACTTTCAATAAAA
66 CGTATTTTTTTCCCGGATTTTATTACTTTCAATAAAA
65289479 CACACACTAA
Statistics
Matches: 509, Mismatches: 36, Indels: 30
0.89 0.06 0.05
Matches are distributed among these distances:
148 9 0.02
149 124 0.24
150 3 0.01
151 2 0.00
152 16 0.03
153 92 0.18
154 119 0.23
156 12 0.02
157 116 0.23
158 16 0.03
ACGTcount: A:0.31, C:0.10, G:0.08, T:0.51
Consensus pattern (155 bp):
AAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAAAACCCTTATTTCGGCCCTTTGTT
CGTATTTTTTTCCCGGATTTTATTACTTTCAATAAAAATATACTATTTTCTAATTTTATTATTTT
ACATTATTTTAGTACATTATGTTTG
Found at i:65295272 original size:15 final size:15
Alignment explanation
Indices: 65295252--65295332 Score: 60
Period size: 15 Copynumber: 5.3 Consensus size: 15
65295242 ATACTACAAA
65295252 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
65295267 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
65295284 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
65295301 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
*
65295314 ATATTT-TTCAGTAAT
1 ATATTTATT-ATTAAT
65295329 ATAT
1 ATAT
65295333 GAAGAATATA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
13 4 0.08
14 15 0.28
15 16 0.30
16 1 0.02
17 7 0.13
18 1 0.02
19 9 0.17
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:65296028 original size:27 final size:25
Alignment explanation
Indices: 65295976--65296028 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
65295966 TATGTTTTAT
*
65295976 ATATATTATTTTATTATATAATATA
1 ATATATTATTTTATTATATAACATA
*
65296001 ATATATTATATTGTATTATATTACATA
1 ATATATTAT-TT-TATTATATAACATA
65296028 A
1 A
65296029 ATTAAATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 9 0.38
26 2 0.08
27 13 0.54
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (25 bp):
ATATATTATTTTATTATATAACATA
Found at i:65296218 original size:19 final size:17
Alignment explanation
Indices: 65296178--65296218 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 17
65296168 ATAATAAAAG
65296178 AAAAAAAGTAAAGTAAAT
1 AAAAAAAGTAAAG-AAAT
65296196 AAAAGAAAGTAAAGAAAT
1 AAAA-AAAGTAAAGAAAT
65296214 AAAAA
1 AAAAA
65296219 CAAAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 1 0.05
18 12 0.55
19 9 0.41
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (17 bp):
AAAAAAAGTAAAGAAAT
Found at i:65296261 original size:15 final size:17
Alignment explanation
Indices: 65296243--65296274 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
65296233 CAGAATAGAA
65296243 AGAA-CAAA-GAAACAG
1 AGAAGCAAACGAAACAG
65296258 AGAAGCAAACGAAACAG
1 AGAAGCAAACGAAACAG
65296275 GGGAAGAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 4 0.27
17 7 0.47
ACGTcount: A:0.62, C:0.16, G:0.22, T:0.00
Consensus pattern (17 bp):
AGAAGCAAACGAAACAG
Found at i:65296928 original size:6 final size:6
Alignment explanation
Indices: 65296866--65296924 Score: 57
Period size: 6 Copynumber: 9.8 Consensus size: 6
65296856 GTGAAGTAAG
* * * *
65296866 TATTAA TATTAG TATTAA TATAAA TATTAG TATTAA TA-TAA TTATTAG
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA -TATTAA
*
65296914 TATTAT TATTA
1 TATTAA TATTA
65296925 TTATGAGTGG
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
5 3 0.07
6 38 0.88
7 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (6 bp):
TATTAA
Found at i:65296928 original size:18 final size:18
Alignment explanation
Indices: 65296870--65296918 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
65296860 AGTAAGTATT
65296870 AATATTAGTATTAATATA
1 AATATTAGTATTAATATA
65296888 AATATTAGTATTAATATA
1 AATATTAGTATTAATATA
*
65296906 ATTATTAGTATTA
1 AATATTAGTATTA
65296919 TTATTATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
AATATTAGTATTAATATA
Found at i:65304242 original size:96 final size:96
Alignment explanation
Indices: 65304117--65304310 Score: 379
Period size: 96 Copynumber: 2.0 Consensus size: 96
65304107 AATACTGAAT
65304117 TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAGAGTGAATTGAAGATGGAAATTATGAAATTG
1 TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAGAGTGAATTGAAGATGGAAATTATGAAATTG
65304182 AAGCAAAAAAATGATGAATCTAATGATAAAC
66 AAGCAAAAAAATGATGAATCTAATGATAAAC
*
65304213 TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAGAGTGAATTGAAGATGGAAATTGTGAAATTG
1 TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAGAGTGAATTGAAGATGGAAATTATGAAATTG
65304278 AAGCAAAAAAATGATGAATCTAATGATAAAC
66 AAGCAAAAAAATGATGAATCTAATGATAAAC
65304309 TG
1 TG
65304311 AGTGTTTTCG
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.45, C:0.05, G:0.25, T:0.25
Consensus pattern (96 bp):
TGGAAGCTGAGATTGGGATTTTGAAGAAAAATCAGAGTGAATTGAAGATGGAAATTATGAAATTG
AAGCAAAAAAATGATGAATCTAATGATAAAC
Found at i:65304603 original size:42 final size:41
Alignment explanation
Indices: 65304557--65304771 Score: 198
Period size: 42 Copynumber: 5.3 Consensus size: 41
65304547 CTTCAATGAA
* **
65304557 CCTATGGAGACTGACCGGAGGGGGACCAAGAACTTGCCTGAG
1 CCTATGG-GACTGACCAGAGGGTCACCAAGAACTTGCCTGAG
* *
65304599 CCTATAGG---G-----AGGGTCACCAAGAACTTGCCTGGG
1 CCTATGGGACTGACCAGAGGGTCACCAAGAACTTGCCTGAG
* * * * *
65304632 CCTATGGGGAAT-AGCCAAAGTGTCACAAAGAGCTTGCCTGAG
1 CCTAT-GGGACTGA-CCAGAGGGTCACCAAGAACTTGCCTGAG
65304674 CCTATAGGGACTGACCAGAGGGTCACCAAGAACTTGCCTGAG
1 CCTAT-GGGACTGACCAGAGGGTCACCAAGAACTTGCCTGAG
65304716 CCTATGGAGACTGACCAGAGGGTCACCAA-AGACTTGCCTGAG
1 CCTATGG-GACTGACCAGAGGGTCACCAAGA-ACTTGCCTGAG
*
65304758 CCTACGGGGACTGA
1 CCTA-TGGGACTGA
65304772 GCAAAGTGTC
Statistics
Matches: 143, Mismatches: 16, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
33 26 0.18
34 2 0.01
38 1 0.01
41 4 0.03
42 107 0.75
43 3 0.02
ACGTcount: A:0.27, C:0.25, G:0.31, T:0.17
Consensus pattern (41 bp):
CCTATGGGACTGACCAGAGGGTCACCAAGAACTTGCCTGAG
Found at i:65304752 original size:84 final size:84
Alignment explanation
Indices: 65304607--65304816 Score: 239
Period size: 84 Copynumber: 2.5 Consensus size: 84
65304597 AGCCTATAGG
* * * *
65304607 GAGGGTCACCAAGAACTTGCCTGGGCCTATGGGGAAT-AGCCAAAGTGTCACAAAGAGCTTGCCT
1 GAGGGTCACCAAGAACTTGCCTGAGCCTATGGAGACTGA-CCAAAGGGTCACAAAGAGCTTGCCT
*
65304671 GAGCCTATAGGGACTGACCA
65 GAGCCTACAGGGACTGACCA
*
65304691 GAGGGTCACCAAGAACTTGCCTGAGCCTATGGAGACTGACCAGAGGGTCACCAAAGA-CTTGCCT
1 GAGGGTCACCAAGAACTTGCCTGAGCCTATGGAGACTGACCAAAGGGTCA-CAAAGAGCTTGCCT
* *
65304755 GAGCCTACGGGGACTGAGCA
65 GAGCCTACAGGGACTGACCA
* * * * *
65304775 AAGTGTC-CCAA-ATACCTTGCCTAAGCCAATGGAGACCGACCA
1 GAGGGTCACCAAGA-A-CTTGCCTGAGCCTATGGAGACTGACCA
65304817 CACAAAGACC
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
82 1 0.01
83 5 0.05
84 96 0.88
85 7 0.06
ACGTcount: A:0.29, C:0.26, G:0.28, T:0.17
Consensus pattern (84 bp):
GAGGGTCACCAAGAACTTGCCTGAGCCTATGGAGACTGACCAAAGGGTCACAAAGAGCTTGCCTG
AGCCTACAGGGACTGACCA
Found at i:65304794 original size:42 final size:42
Alignment explanation
Indices: 65304608--65304816 Score: 203
Period size: 42 Copynumber: 5.0 Consensus size: 42
65304598 GCCTATAGGG
* *
65304608 AGGGTCACC-AAGAACTTGCCTGGGCCTATGGGGAAT-AGCCAA
1 AGGGTCACCAAAG-ACTTGCCTGAGCCTATGGGGACTGA-CCAA
* * *
65304650 AGTGTCA-CAAAGAGCTTGCCTGAGCCTATAGGGACTGACCAG
1 AGGGTCACCAAAGA-CTTGCCTGAGCCTATGGGGACTGACCAA
* *
65304692 AGGGTCACC-AAGAACTTGCCTGAGCCTATGGAGACTGACCAG
1 AGGGTCACCAAAG-ACTTGCCTGAGCCTATGGGGACTGACCAA
* *
65304734 AGGGTCACCAAAGACTTGCCTGAGCCTACGGGGACTGAGCAA
1 AGGGTCACCAAAGACTTGCCTGAGCCTATGGGGACTGACCAA
* * * * * *
65304776 AGTGTC-CCAAATACCTTGCCTAAGCCAATGGAGACCGACCA
1 AGGGTCACCAAAGA-CTTGCCTGAGCCTATGGGGACTGACCA
65304817 CACAAAGACC
Statistics
Matches: 140, Mismatches: 20, Indels: 14
0.80 0.11 0.08
Matches are distributed among these distances:
41 8 0.06
42 126 0.90
43 6 0.04
ACGTcount: A:0.29, C:0.26, G:0.28, T:0.17
Consensus pattern (42 bp):
AGGGTCACCAAAGACTTGCCTGAGCCTATGGGGACTGACCAA
Found at i:65309963 original size:20 final size:20
Alignment explanation
Indices: 65309940--65309979 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
65309930 AATAAACATC
*
65309940 AAAAATTTATTTTAAAAATA
1 AAAAATTTATTTCAAAAATA
65309960 AAAAATTTATTTCAAAAATA
1 AAAAATTTATTTCAAAAATA
65309980 TTTTAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATTTATTTCAAAAATA
Found at i:65313467 original size:16 final size:18
Alignment explanation
Indices: 65313429--65313464 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
65313419 TTTTAAATGT
*
65313429 TAAAAATTACATAATATA
1 TAAAAATAACATAATATA
65313447 TAAAAATAACATAATATA
1 TAAAAATAACATAATATA
65313465 AAATATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAAATAACATAATATA
Found at i:65314817 original size:25 final size:25
Alignment explanation
Indices: 65314789--65314844 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
65314779 TTGTTCCTAG
*
65314789 TGTTTTGGTGCTGTTATTTTT-CTGT
1 TGTTTT-GTGCTGTTATTTTTGCTAT
* *
65314814 TGTTTTTTGTTGTTATTTTTGCTAT
1 TGTTTTGTGCTGTTATTTTTGCTAT
65314839 TGTTTT
1 TGTTTT
65314845 TGTTATTTGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.05, C:0.05, G:0.20, T:0.70
Consensus pattern (25 bp):
TGTTTTGTGCTGTTATTTTTGCTAT
Found at i:65314824 original size:21 final size:23
Alignment explanation
Indices: 65314800--65314852 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
65314790 GTTTTGGTGC
*
65314800 TGTTATTTTT-CTGTTGTTTTTTGT
1 TGTTATTTTTGCTATTG--TTTTGT
65314824 TGTTATTTTTGCTATTG-TTT-T
1 TGTTATTTTTGCTATTGTTTTGT
65314845 TGTTATTT
1 TGTTATTT
65314853 GCACTGGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 9 0.33
22 3 0.11
24 10 0.37
25 5 0.19
ACGTcount: A:0.08, C:0.04, G:0.15, T:0.74
Consensus pattern (23 bp):
TGTTATTTTTGCTATTGTTTTGT
Found at i:65321958 original size:29 final size:31
Alignment explanation
Indices: 65321888--65321960 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 31
65321878 AAGTTTTAAA
* * *
65321888 TATACATTTGAACCATAATTAGAGTTCAACG
1 TATACAATTGCACCATAATTAAAGTTCAACG
* * *
65321919 TGTATAATTGCACCA-AATTAAAGTT-AATG
1 TATACAATTGCACCATAATTAAAGTTCAACG
65321948 TATACAATTGCAC
1 TATACAATTGCAC
65321961 ATTAAATCAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
29 14 0.41
30 9 0.26
31 11 0.32
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (31 bp):
TATACAATTGCACCATAATTAAAGTTCAACG
Found at i:65321985 original size:29 final size:27
Alignment explanation
Indices: 65321919--65321985 Score: 62
Period size: 31 Copynumber: 2.3 Consensus size: 27
65321909 GAGTTCAACG
* *
65321919 TGTATAATTGCACCAAATTAAAGTTAA
1 TGTATAATTGCACCAAATCAAAATTAA
* *
65321946 TGTATACAATTGCACATTAAATCAAAATTCA
1 TGTAT--AATTGCAC--CAAATCAAAATTAA
65321977 TGTATAATT
1 TGTATAATT
65321986 TTGAGATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
27 5 0.16
29 12 0.38
31 15 0.47
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (27 bp):
TGTATAATTGCACCAAATCAAAATTAA
Found at i:65327155 original size:21 final size:22
Alignment explanation
Indices: 65327131--65327171 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
65327121 ATAATTAAAA
*
65327131 TATTTCAT-TACAATAAACTTT
1 TATTTAATATACAATAAACTTT
65327152 TATTTAATATACAATAAACT
1 TATTTAATATACAATAAACT
65327172 AATAATTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (22 bp):
TATTTAATATACAATAAACTTT
Found at i:65327499 original size:8 final size:7
Alignment explanation
Indices: 65327472--65327497 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
65327462 TTTTTCTCTA
65327472 TTTTTAT
1 TTTTTAT
65327479 TTTTTAT
1 TTTTTAT
65327486 TTTTTAT
1 TTTTTAT
65327493 TTTTT
1 TTTTT
65327498 TAATAAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:65329398 original size:141 final size:141
Alignment explanation
Indices: 65329144--65329438 Score: 545
Period size: 141 Copynumber: 2.1 Consensus size: 141
65329134 CCTGCAACAC
*
65329144 CGCCACCTCCGCCTCCTGCAGCTGCATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCTG
1 CGCCACCTCCGCCTCCTGCAGCTGCATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGG
65329209 AAAGAGAATGTGAATAATACTCAAAAGTTTCATGTTGAGTACGATGGAAGTGAGTCTCCGGCTCC
66 AAAGAGAATGTGAATAATACTCAAAAGTTTCATGTTGAGTACGATGGAAGTGAGTCTCCGGCTCC
65329274 GCAGCCAGTAA
131 GCAGCCAGTAA
* *
65329285 CGCCACCGCCGCCTCCTGCAGCTGGATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGG
1 CGCCACCTCCGCCTCCTGCAGCTGCATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGG
*
65329350 AAAGAGAATGTGAATAATGCTCAAAAGTTTCATGTTGAGTACGATGGAAGTGAGTCTCCGGCTCC
66 AAAGAGAATGTGAATAATACTCAAAAGTTTCATGTTGAGTACGATGGAAGTGAGTCTCCGGCTCC
*
65329415 TCAGCCAGTAA
131 GCAGCCAGTAA
65329426 CGCCACCTCCGCC
1 CGCCACCTCCGCC
65329439 GCCTCCTCCT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 148 1.00
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22
Consensus pattern (141 bp):
CGCCACCTCCGCCTCCTGCAGCTGCATATCGTAAACCAAGGCGAAGTTATCAAGCTGTTGGCCGG
AAAGAGAATGTGAATAATACTCAAAAGTTTCATGTTGAGTACGATGGAAGTGAGTCTCCGGCTCC
GCAGCCAGTAA
Found at i:65341352 original size:16 final size:15
Alignment explanation
Indices: 65341327--65341358 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
65341317 TAAGTGGGGA
65341327 ATATACCTTAAAGAT
1 ATATACCTTAAAGAT
65341342 ATATAACCTTAAAGAT
1 ATAT-ACCTTAAAGAT
65341358 A
1 A
65341359 GTGGCTTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (15 bp):
ATATACCTTAAAGAT
Found at i:65342837 original size:22 final size:21
Alignment explanation
Indices: 65342810--65342851 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
65342800 AAAATTCAAA
*
65342810 TAAAATTAATATTTATGGTTT
1 TAAAAATAATATTTATGGTTT
* *
65342831 TAAAAATATTATTTATTGTTT
1 TAAAAATAATATTTATGGTTT
65342852 AATAGAGTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (21 bp):
TAAAAATAATATTTATGGTTT
Found at i:65353949 original size:32 final size:32
Alignment explanation
Indices: 65353893--65353959 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
65353883 TAAAAGATGG
**
65353893 TTAATACAAATCCTTGAAGTAATTAAGATTGA
1 TTAATACAAATCCTTGAAAAAATTAAGATTGA
* *
65353925 TTAATACAAA-CCTTTGAAAAAATTAGGGTTGA
1 TTAATACAAATCC-TTGAAAAAATTAAGATTGA
65353957 TTA
1 TTA
65353960 GAAATTTAGC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 2 0.07
32 28 0.93
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.34
Consensus pattern (32 bp):
TTAATACAAATCCTTGAAAAAATTAAGATTGA
Found at i:65363324 original size:13 final size:13
Alignment explanation
Indices: 65363302--65363343 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
65363292 TTGAATAAAT
65363302 AAAACC-AATATA
1 AAAACCAAATATA
65363314 AAAACCAAATACTA
1 AAAACCAAATA-TA
**
65363328 AAGCCCAAATATA
1 AAAACCAAATATA
65363341 AAA
1 AAA
65363344 TAAAACAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
12 6 0.24
13 8 0.32
14 11 0.44
ACGTcount: A:0.64, C:0.19, G:0.02, T:0.14
Consensus pattern (13 bp):
AAAACCAAATATA
Found at i:65364448 original size:13 final size:14
Alignment explanation
Indices: 65364420--65364454 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
65364410 ATATTGCATC
65364420 ATTATTATTGTATT
1 ATTATTATTGTATT
*
65364434 ATTATT-TTTTATT
1 ATTATTATTGTATT
65364447 ATTATTAT
1 ATTATTAT
65364455 AACCATGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (14 bp):
ATTATTATTGTATT
Found at i:65382711 original size:23 final size:22
Alignment explanation
Indices: 65382680--65382727 Score: 53
Period size: 22 Copynumber: 2.1 Consensus size: 22
65382670 TTATGAATAT
65382680 ATTAAAATA-ATATAAACTTAAAA
1 ATTAAAATACATATAAA--TAAAA
* *
65382703 ATTAGAATACTTATAAATAAAA
1 ATTAAAATACATATAAATAAAA
65382725 ATT
1 ATT
65382728 CTAATGAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 8 0.36
23 8 0.36
24 6 0.27
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (22 bp):
ATTAAAATACATATAAATAAAA
Found at i:65384362 original size:19 final size:19
Alignment explanation
Indices: 65384334--65384380 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
65384324 ACTTGCTTTG
*
65384334 AATTTTTTATAAGTT-TTAT
1 AATTTATTAT-AGTTGTTAT
*
65384353 AATTTATTATTGTTGTTAT
1 AATTTATTATAGTTGTTAT
65384372 AATTTATTA
1 AATTTATTA
65384381 CATCTTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 3 0.12
19 22 0.88
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
AATTTATTATAGTTGTTAT
Found at i:65386076 original size:3 final size:3
Alignment explanation
Indices: 65386068--65386094 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
65386058 GTTATTTTGG
65386068 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
65386095 ATTTTTTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:65387939 original size:19 final size:19
Alignment explanation
Indices: 65387907--65387946 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
65387897 TACATCCCAC
*
65387907 AATTTATTTATTTTTTATA
1 AATTTATTTATTTTCTATA
65387926 AATTATATTT-TTTTCTATA
1 AATT-TATTTATTTTCTATA
65387945 AA
1 AA
65387947 CGTAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (19 bp):
AATTTATTTATTTTCTATA
Found at i:65388099 original size:31 final size:30
Alignment explanation
Indices: 65388042--65388099 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
65388032 ATGATGCATA
* *
65388042 ATTATATTATTGTAATTTGTGTTATGGTTT
1 ATTATATTATTGTAAATTGTGCTATGGTTT
65388072 ATTATTATTATT-TAAATTGTCGCTATGG
1 ATTA-TATTATTGTAAATTGT-GCTATGG
65388100 ATATCGTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 11 0.46
31 13 0.54
ACGTcount: A:0.26, C:0.03, G:0.16, T:0.55
Consensus pattern (30 bp):
ATTATATTATTGTAAATTGTGCTATGGTTT
Found at i:65389824 original size:27 final size:25
Alignment explanation
Indices: 65389784--65389833 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 25
65389774 TATGAAAAGG
65389784 GCAAAATGCAAAAAATACATTTCAACA
1 GCAAAATGCAAAAAAT-C-TTTCAACA
65389811 GCAAAAT-CATAAAAATCTTTCAA
1 GCAAAATGCA-AAAAATCTTTCAA
65389834 AATATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 6 0.27
26 3 0.14
27 13 0.59
ACGTcount: A:0.54, C:0.18, G:0.06, T:0.22
Consensus pattern (25 bp):
GCAAAATGCAAAAAATCTTTCAACA
Found at i:65392625 original size:16 final size:17
Alignment explanation
Indices: 65392604--65392639 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
65392594 AAATTTTATA
65392604 AAATAGT-TTAAAAATT
1 AAATAGTATTAAAAATT
*
65392620 AAATAGTATTGAAAATT
1 AAATAGTATTAAAAATT
65392637 AAA
1 AAA
65392640 ATGCTAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.58, C:0.00, G:0.08, T:0.33
Consensus pattern (17 bp):
AAATAGTATTAAAAATT
Found at i:65395947 original size:16 final size:17
Alignment explanation
Indices: 65395926--65395958 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
65395916 TTGGCCTCGG
65395926 GGCAAAA-AATTAATTT
1 GGCAAAATAATTAATTT
*
65395942 GGCAAAATCATTAATTT
1 GGCAAAATAATTAATTT
65395959 ATTTTGGAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.33
Consensus pattern (17 bp):
GGCAAAATAATTAATTT
Found at i:65398027 original size:29 final size:28
Alignment explanation
Indices: 65397986--65398040 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
65397976 CGGAAGTTTG
*
65397986 CTGGTATTCTGTTGGTTTTGTTTTGAGT
1 CTGGTATTCTGTTGGTTTTATTTTGAGT
*
65398014 CTGGTTTTGCTGTTGGTTTTATTTTGA
1 CTGGTATT-CTGTTGGTTTTATTTTGA
65398041 TGAACTGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.07, C:0.07, G:0.27, T:0.58
Consensus pattern (28 bp):
CTGGTATTCTGTTGGTTTTATTTTGAGT
Found at i:65399020 original size:17 final size:17
Alignment explanation
Indices: 65398998--65399031 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
65398988 TAAATTTATG
65398998 TTTATTTAGAATAAAAT
1 TTTATTTAGAATAAAAT
**
65399015 TTTATTTTTAATAAAAT
1 TTTATTTAGAATAAAAT
65399032 ATAATGAGAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TTTATTTAGAATAAAAT
Found at i:65401065 original size:42 final size:42
Alignment explanation
Indices: 65401007--65401093 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
65400997 CTTTACTCCA
65401007 AAAATGTGTAATAAATTAAATCTATAGGTTAGATTAAAGAAC
1 AAAATGTGTAATAAATTAAATCTATAGGTTAGATTAAAGAAC
65401049 AAAATGTGTAATAAATTAAATCTATAGGTTAGATTAAAGAAC
1 AAAATGTGTAATAAATTAAATCTATAGGTTAGATTAAAGAAC
65401091 AAA
1 AAA
65401094 TTAATCCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.52, C:0.05, G:0.14, T:0.30
Consensus pattern (42 bp):
AAAATGTGTAATAAATTAAATCTATAGGTTAGATTAAAGAAC
Found at i:65414849 original size:192 final size:192
Alignment explanation
Indices: 65414511--65414909 Score: 602
Period size: 192 Copynumber: 2.1 Consensus size: 192
65414501 CCACCTTGCT
* *
65414511 CAACACTGAGCATGCTACTTGCTAGTTCATTAATCAATGATCCGATCTGTTCACTGGAATCGTGA
1 CAACACTGAGCATGCTACTTGCTAGTTCAATAATCAATGATCCGATCTGTTCACTAGAATCGTGA
* * * *
65414576 TTGTAAACCGATGTGTGAATGATGTTATTCATTATGATTTGAAGCGTCGGAAACTCTTTAGTTTG
66 TTGTAAACCGATGCGTGAATGATGTTATTCATTATGATTTGAAGAGTCCGAAACTCTTTACTTTG
* * * *
65414641 ATGCTTAGTCTGTTTCGGTATGAGAGGAATTGTTGAAAAACTGAATCAGTGACTGCATCGAC
131 ATGCATAGTCTGTTTCGGTACGAGAAGAATTGTTGAAAAACTGAATCAGTAACTGCATCGAC
*
65414703 CAACACTGAGCATGCTACTTGTTAGTTCAATAATCAATGATCCGATCTGTTCACTAGAATCGTGA
1 CAACACTGAGCATGCTACTTGCTAGTTCAATAATCAATGATCCGATCTGTTCACTAGAATCGTGA
* * * *
65414768 TTGTAAATCGATGCGTGAATGATGTTACTT-TTTATGATTTGAAGAGTCCGAAGCTTTTTACTTT
66 TTGTAAACCGATGCGTGAATGATGTTA-TTCATTATGATTTGAAGAGTCCGAAACTCTTTACTTT
* * * *
65414832 GATGCATATTTTGTTTCGGTACGAGAAGAATTGTTGAAAAATTGAATCAGTAACTGCATCGAT
130 GATGCATAGTCTGTTTCGGTACGAGAAGAATTGTTGAAAAACTGAATCAGTAACTGCATCGAC
*
65414895 CAACACAGAGCATGC
1 CAACACTGAGCATGC
65414910 AAATGCGTAA
Statistics
Matches: 186, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
192 184 0.99
193 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (192 bp):
CAACACTGAGCATGCTACTTGCTAGTTCAATAATCAATGATCCGATCTGTTCACTAGAATCGTGA
TTGTAAACCGATGCGTGAATGATGTTATTCATTATGATTTGAAGAGTCCGAAACTCTTTACTTTG
ATGCATAGTCTGTTTCGGTACGAGAAGAATTGTTGAAAAACTGAATCAGTAACTGCATCGAC
Found at i:65417156 original size:53 final size:53
Alignment explanation
Indices: 65417094--65417201 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
65417084 TCAATTACTC
65417094 TTAACAATTTCAATTGAATTAATCCAAAGGTAAAAACTATGCTCATATCCAAA
1 TTAACAATTTCAATTGAATTAATCCAAAGGTAAAAACTATGCTCATATCCAAA
65417147 TTAACAATTTCAATTGAATTAATCCAAAGGTAAAAACTATGCTCATATCCAAA
1 TTAACAATTTCAATTGAATTAATCCAAAGGTAAAAACTATGCTCATATCCAAA
65417200 TT
1 TT
65417202 CCAATAGGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.31
Consensus pattern (53 bp):
TTAACAATTTCAATTGAATTAATCCAAAGGTAAAAACTATGCTCATATCCAAA
Found at i:65417199 original size:25 final size:25
Alignment explanation
Indices: 65417115--65417199 Score: 66
Period size: 25 Copynumber: 3.3 Consensus size: 25
65417105 AATTGAATTA
65417115 ATCCAAAGGTAAAAACTATGCTCAT
1 ATCCAAAGGTAAAAACTATGCTCAT
* * * * *
65417140 ATCCAAA-TTAACAATTTCAATTGAATTA-
1 ATCCAAAGGTAA-AA--ACTA-TG-CTCAT
65417168 ATCCAAAGGTAAAAACTATGCTCAT
1 ATCCAAAGGTAAAAACTATGCTCAT
65417193 ATCCAAA
1 ATCCAAA
65417200 TTCCAATAGG
Statistics
Matches: 43, Mismatches: 10, Indels: 14
0.64 0.15 0.21
Matches are distributed among these distances:
24 5 0.12
25 18 0.42
26 2 0.05
27 2 0.05
28 11 0.26
29 5 0.12
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (25 bp):
ATCCAAAGGTAAAAACTATGCTCAT
Found at i:65417847 original size:14 final size:16
Alignment explanation
Indices: 65417828--65417859 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
65417818 TTATTAATAA
65417828 ATTTGTTT-AT-ATTT
1 ATTTGTTTGATAATTT
65417842 ATTTGTTTGATAATTT
1 ATTTGTTTGATAATTT
65417858 AT
1 AT
65417860 ATAAAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (16 bp):
ATTTGTTTGATAATTT
Found at i:65422908 original size:78 final size:78
Alignment explanation
Indices: 65422779--65422965 Score: 356
Period size: 78 Copynumber: 2.4 Consensus size: 78
65422769 TCATTCAACA
*
65422779 AAGCTATGCCATGTTGGCAAAGGCAGAGGCCCTGGTCCCAAGTACTCGGGTTCAAAACTCATCAT
1 AAGCTATGCCATGTTGGCGAAGGCAGAGGCCCTGGTCCCAAGTACTCGGGTTCAAAACTCATCAT
65422844 GAGCAATTACCAT
66 GAGCAATTACCAT
*
65422857 AAGCTATGCCATGTTGGCGAAGGCAGAGGCCCTGGTCCCAAGTACTCGGGTTCGAAACTCATCAT
1 AAGCTATGCCATGTTGGCGAAGGCAGAGGCCCTGGTCCCAAGTACTCGGGTTCAAAACTCATCAT
65422922 GAGCAATTACCAT
66 GAGCAATTACCAT
65422935 AAGCTATGCCATGTTGGCGAAGGCAGAGGCC
1 AAGCTATGCCATGTTGGCGAAGGCAGAGGCC
65422966 TATGTGTGGG
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 107 1.00
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (78 bp):
AAGCTATGCCATGTTGGCGAAGGCAGAGGCCCTGGTCCCAAGTACTCGGGTTCAAAACTCATCAT
GAGCAATTACCAT
Found at i:65428467 original size:17 final size:17
Alignment explanation
Indices: 65428445--65428478 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
65428435 AAAAAGTATT
*
65428445 TTAAAAATATTTTAAAA
1 TTAAAAAAATTTTAAAA
65428462 TTAAAAAAATTTTAAAA
1 TTAAAAAAATTTTAAAA
65428479 AATAAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAAAATTTTAAAA
Found at i:65428491 original size:18 final size:17
Alignment explanation
Indices: 65428446--65428491 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
65428436 AAAAGTATTT
*
65428446 TAAAAATATTTTAAAAT
1 TAAAAATATTTTAAAAA
*
65428463 TAAAAAAATTTTAAAAAA
1 TAAAAATATTTT-AAAAA
*
65428481 TAAATATATTT
1 TAAAAATATTT
65428492 ATTATATCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAAAAATATTTTAAAAA
Found at i:65434078 original size:20 final size:20
Alignment explanation
Indices: 65434055--65434093 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
65434045 AGCTTTTGAG
* *
65434055 TGCTTTGCAAATCTTTGAAA
1 TGCTTTGAAAATATTTGAAA
65434075 TGCTTTGAAAATATTTGAA
1 TGCTTTGAAAATATTTGAA
65434094 CACTAAACGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
TGCTTTGAAAATATTTGAAA
Found at i:65443489 original size:84 final size:84
Alignment explanation
Indices: 65443367--65443522 Score: 242
Period size: 84 Copynumber: 1.9 Consensus size: 84
65443357 GTGTTGATCT
* * *
65443367 TTTTTAAGTATGGGTTGTCATATTAGTACAATGATAAATGCTGTATACGGATAACAAACATCCTC
1 TTTTTAAGTATGGATTGTCATATTAGTACAACGATAAATGCTGTATACGGATAACAAACATCCAC
65443432 TAACTCACATAAGGTTATC
66 TAACTCACATAAGGTTATC
* * *
65443451 TTTTTAAGTATGGATTGTCATATTAAG-ACAACGGTAAATGCTGTATACGGATGACAGACATCCA
1 TTTTTAAGTATGGATTGTCATATT-AGTACAACGATAAATGCTGTATACGGATAACAAACATCCA
65443515 CTAACTCA
65 CTAACTCA
65443523 TAGAGGATTG
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
84 63 0.97
85 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.33
Consensus pattern (84 bp):
TTTTTAAGTATGGATTGTCATATTAGTACAACGATAAATGCTGTATACGGATAACAAACATCCAC
TAACTCACATAAGGTTATC
Found at i:65449263 original size:37 final size:38
Alignment explanation
Indices: 65449215--65449287 Score: 121
Period size: 38 Copynumber: 1.9 Consensus size: 38
65449205 TATAATAAAT
*
65449215 ATATTTTTTTA-TTTTTTAATTTTAAAATACTTTTTAA
1 ATATTTTTTTATTTTTTTAATTTTAAAATAATTTTTAA
*
65449252 ATATTTTTTTATTTTTTTATTTTTAAAATAATTTTT
1 ATATTTTTTTATTTTTTTAATTTTAAAATAATTTTT
65449288 TAATGTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
37 11 0.33
38 22 0.67
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.68
Consensus pattern (38 bp):
ATATTTTTTTATTTTTTTAATTTTAAAATAATTTTTAA
Found at i:65449296 original size:26 final size:26
Alignment explanation
Indices: 65449245--65449298 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
65449235 TTTAAAATAC
* * *
65449245 TTTTTAAATATTTTTTTATTTTTTTA
1 TTTTTAAATAATTTTTTATATGTTTA
65449271 TTTTTAAAATAATTTTTTA-ATGTTTA
1 TTTTT-AAATAATTTTTTATATGTTTA
65449297 TT
1 TT
65449299 AAAAATAGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (26 bp):
TTTTTAAATAATTTTTTATATGTTTA
Found at i:65451352 original size:6 final size:6
Alignment explanation
Indices: 65451343--65451370 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
65451333 ATATATATGC
65451343 ATGTAT ATGTAT ATGTAT ATGTAT ATGT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGT
65451371 TGTTATTGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:65455932 original size:26 final size:27
Alignment explanation
Indices: 65455880--65455933 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
65455870 AGATAAAAAT
* *
65455880 TTTAATAAAAAATTAATTTATTTTTAA
1 TTTAATAAAAAATTAATTTACTCTTAA
65455907 TTTAAT-AAAAA-TAATTTAACTCTTAA
1 TTTAATAAAAAATTAATTT-ACTCTTAA
65455933 T
1 T
65455934 AAATTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.25
26 12 0.50
27 6 0.25
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (27 bp):
TTTAATAAAAAATTAATTTACTCTTAA
Found at i:65459888 original size:29 final size:29
Alignment explanation
Indices: 65459846--65459901 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
65459836 CTTGGATTTA
65459846 AAATAATTAATTTTAATTTTAGTCAAAAC
1 AAATAATTAATTTTAATTTTAGTCAAAAC
65459875 AAATAATTAATTTTAATTTTAGTCAAA
1 AAATAATTAATTTTAATTTTAGTCAAA
65459902 TAATTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.43
Consensus pattern (29 bp):
AAATAATTAATTTTAATTTTAGTCAAAAC
Found at i:65464210 original size:158 final size:158
Alignment explanation
Indices: 65463922--65464221 Score: 546
Period size: 158 Copynumber: 1.9 Consensus size: 158
65463912 GTCCTTATAT
*
65463922 ATCCTTCTCCTTTCCAATGTGTTTAGAATTAGAATGGTGGTTGAATCAGTCAAGCCATCAGTCCG
1 ATCCTTCTCCTTTCCAATGTGTTTAGAATCAGAATGGTGGTTGAATCAGTCAAGCCATCAGTCCG
65463987 TCGATCTAATTAGTCTGTTTGATTCGATTAACAAGCCATTAAAGAAATCATAGAAAATATAAAAT
66 TCGATCTAATTAGTCTGTTTGATTCGATTAACAAGCCATTAAAGAAATCATAGAAAATATAAAAT
65464052 ATTAAAAATCTGTTTAGAAAAAACAAAA
131 ATTAAAAATCTGTTTAGAAAAAACAAAA
* * **
65464080 ATCCTTCTCCTTTCCAATGTGTTTAGAATCAGATTGGTGGTTGAATCGGTCAAGCCATCAGTTTG
1 ATCCTTCTCCTTTCCAATGTGTTTAGAATCAGAATGGTGGTTGAATCAGTCAAGCCATCAGTCCG
*
65464145 TCGATCTGATTAGTCTGTTTGATTCGATTAACAAGCCATTAAAGAAATCATAGAAAATATAAAAT
66 TCGATCTAATTAGTCTGTTTGATTCGATTAACAAGCCATTAAAGAAATCATAGAAAATATAAAAT
65464210 ATTAAAAATCTG
131 ATTAAAAATCTG
65464222 GTTCAACTAC
Statistics
Matches: 136, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
158 136 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (158 bp):
ATCCTTCTCCTTTCCAATGTGTTTAGAATCAGAATGGTGGTTGAATCAGTCAAGCCATCAGTCCG
TCGATCTAATTAGTCTGTTTGATTCGATTAACAAGCCATTAAAGAAATCATAGAAAATATAAAAT
ATTAAAAATCTGTTTAGAAAAAACAAAA
Found at i:65467546 original size:9 final size:10
Alignment explanation
Indices: 65467515--65467562 Score: 51
Period size: 10 Copynumber: 4.4 Consensus size: 10
65467505 AATATTTAAC
65467515 TTTAAATGTGTT
1 TTTAAAT-T-TT
65467527 TTTAAATTTT
1 TTTAAATTTT
65467537 TTTAAATTTT
1 TTTAAATTTT
*
65467547 TTAATAATATTT
1 TTTA-AAT-TTT
65467559 TTTA
1 TTTA
65467563 GTCCATATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
10 15 0.47
11 4 0.12
12 13 0.41
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (10 bp):
TTTAAATTTT
Found at i:65486198 original size:31 final size:31
Alignment explanation
Indices: 65486163--65486225 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
65486153 CTTAACAACC
*
65486163 TAGTGTCTTAAAT-AAAAGATTTCAAATAGTT
1 TAGTGACTTAAATGAAAA-ATTTCAAATAGTT
* *
65486194 TAGTGACTTAAATGAAAACTTTTAAATAGTT
1 TAGTGACTTAAATGAAAAATTTCAAATAGTT
65486225 T
1 T
65486226 GTCAACCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 24 0.86
32 4 0.14
ACGTcount: A:0.41, C:0.06, G:0.13, T:0.40
Consensus pattern (31 bp):
TAGTGACTTAAATGAAAAATTTCAAATAGTT
Found at i:65501034 original size:40 final size:40
Alignment explanation
Indices: 65500979--65501058 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
65500969 TATTTATAGT
65500979 GATGGAGTAAGCTCTTTATTAAATCAATTATCTATGATAA
1 GATGGAGTAAGCTCTTTATTAAATCAATTATCTATGATAA
65501019 GATGGAGTAAGCTCTTTATTAAATCAATTATCTATGATAA
1 GATGGAGTAAGCTCTTTATTAAATCAATTATCTATGATAA
65501059 CATATCGTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (40 bp):
GATGGAGTAAGCTCTTTATTAAATCAATTATCTATGATAA
Found at i:65507810 original size:10 final size:10
Alignment explanation
Indices: 65507797--65507836 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
65507787 CCATTTATTT
65507797 TAATTTTTTA
1 TAATTTTTTA
65507807 TAA-TTTTTA
1 TAATTTTTTA
*
65507816 TGAATTTTTAA
1 T-AATTTTTTA
65507827 TAATTTTTTA
1 TAATTTTTTA
65507837 ATAGAACTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 7 0.27
10 13 0.50
11 6 0.23
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (10 bp):
TAATTTTTTA
Found at i:65508539 original size:26 final size:28
Alignment explanation
Indices: 65508489--65508540 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
65508479 TAAACAATCT
*
65508489 TGGATTTTGAAAATTCCAAATTTTAAAA
1 TGGATTTTGAAAATTCCAAAATTTAAAA
*
65508517 TGGATTTTG-TAA-TCCAAAATTTAA
1 TGGATTTTGAAAATTCCAAAATTTAA
65508541 CTCTCATGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 11 0.50
27 2 0.09
28 9 0.41
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (28 bp):
TGGATTTTGAAAATTCCAAAATTTAAAA
Found at i:65511746 original size:83 final size:81
Alignment explanation
Indices: 65511604--65511779 Score: 250
Period size: 83 Copynumber: 2.1 Consensus size: 81
65511594 TTTTTCCCTC
*
65511604 TTTG-TTGAATATGAATTACATGGACTTAAAGATCTTGTTTTTATTTAATGTGTTGTGATATTTT
1 TTTGATTGAATATGAATTACATGGACTTAAAGATCTTGTTTTTATTTAATGTGTTGTGATA-TCT
65511668 TTTATGGGTTTTGCTTG
65 TTTATGGGTTTTGCTTG
* *
65511685 TTTTGATTGAATATGAATTACTTGGACTTAAAGATCTTGTTTTTATTT-GT-TGTATGATGATAT
1 -TTTGATTGAATATGAATTACATGGACTTAAAGATCTTGTTTTTATTTAATGTGT-TG-TGATAT
*
65511748 CTTTTCTGGGTTTTGCTTG
63 CTTTTATGGGTTTTGCTTG
65511767 TTTGAATTGAATA
1 TTTG-ATTGAATA
65511780 CTGTTAGGTA
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
81 7 0.08
82 33 0.38
83 46 0.53
ACGTcount: A:0.23, C:0.06, G:0.19, T:0.52
Consensus pattern (81 bp):
TTTGATTGAATATGAATTACATGGACTTAAAGATCTTGTTTTTATTTAATGTGTTGTGATATCTT
TTATGGGTTTTGCTTG
Found at i:65515587 original size:3 final size:3
Alignment explanation
Indices: 65515579--65515603 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
65515569 GAAGTGAGCA
65515579 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
65515604 TTAAGGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:65518994 original size:50 final size:50
Alignment explanation
Indices: 65518875--65518995 Score: 145
Period size: 50 Copynumber: 2.4 Consensus size: 50
65518865 TATATAAGCG
* * *
65518875 TTGACAGGATGTGCAAATATTGTAGGTTAAATTTGTTAAATCATGACTAAA
1 TTGACAGAATGTGCAAAT-TTGTAGGTTAAACTTGTTAAATCATGACCAAA
** * *
65518926 TTGAGGGAATGTGTAAATTTGTGGGTTAAACTTGTTAAATCAAT-ACCAAA
1 TTGACAGAATGTGCAAATTTGTAGGTTAAACTTGTTAAATC-ATGACCAAA
*
65518976 TTGACATAATGTGCAAATTT
1 TTGACAGAATGTGCAAATTT
65518996 TAAGAGATGA
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
50 42 0.72
51 16 0.28
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (50 bp):
TTGACAGAATGTGCAAATTTGTAGGTTAAACTTGTTAAATCATGACCAAA
Found at i:65519204 original size:22 final size:22
Alignment explanation
Indices: 65519162--65519204 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
65519152 TAAGAAAATA
*
65519162 ATATATTTTTAATTGATATTTT
1 ATATATTTTTAATTGAAATTTT
*
65519184 ATATCTTTTATAATT-AAATTT
1 ATATATTTT-TAATTGAAATTT
65519205 AAAATAGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
ATATATTTTTAATTGAAATTTT
Found at i:65524301 original size:125 final size:127
Alignment explanation
Indices: 65524068--65524395 Score: 375
Period size: 126 Copynumber: 2.6 Consensus size: 127
65524058 AACAAAAAGA
* ** * *
65524068 ATCCAACCGAAACAAATTTTTGAAGCTATAAATACACTAATGAAATGCAAACAATGAAAGCTTTA
1 ATCCAACCAAAACAAATTCCTGAAGCTATAAATAAACTAATGAAATGCAAACAATCAAAGCTTTA
* * **
65524133 CCGTAAAGCACAAATCATAACATGGTCCAATTCG-GGGGGAAAA-AACATCAAGCTAAGAGC
66 CCATAAAGCACAAATCATAACACGGTCCAATTCGAGGGAAAAAACAACATCAAGCTAAGAGC
* *
65524193 ATCCAACCAAAACAAATTCCTGTAGCTATAAGTAAACTAATGAAATGCAAACAA-CACAAGCTTT
1 ATCCAACCAAAACAAATTCCTGAAGCTATAAATAAACTAATGAAATGCAAACAATCA-AAGC-TT
*
65524257 TACCATAAAGCACAAATCATAACACGGTCCACTTC-AGGGAAAAAACAACATCAAGCTAAGAGC
64 TACCATAAAGCACAAATCATAACACGGTCCAATTCGAGGGAAAAAACAACATCAAGCTAAGAGC
* * * * *
65524320 ATCCACATC-TAAGAAATTCTTCAAGCTATGAAATACAA-TAAT-AAATGCAAACAA-CAAAAGC
1 ATCCA-ACCAAAACAAATTCCTGAAGCTAT-AAATA-AACTAATGAAATGCAAACAATC-AAAGC
* *
65524381 TTTACCTTTAAGCAC
62 TTTACCATAAAGCAC
65524396 GAACCAAAAA
Statistics
Matches: 174, Mismatches: 21, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
124 1 0.01
125 52 0.30
126 54 0.31
127 54 0.31
128 11 0.06
129 2 0.01
ACGTcount: A:0.46, C:0.21, G:0.12, T:0.20
Consensus pattern (127 bp):
ATCCAACCAAAACAAATTCCTGAAGCTATAAATAAACTAATGAAATGCAAACAATCAAAGCTTTA
CCATAAAGCACAAATCATAACACGGTCCAATTCGAGGGAAAAAACAACATCAAGCTAAGAGC
Found at i:65524348 original size:127 final size:125
Alignment explanation
Indices: 65524068--65524383 Score: 388
Period size: 127 Copynumber: 2.5 Consensus size: 125
65524058 AACAAAAAGA
* * * *
65524068 ATCCAACCGAAACAAATTTTTGAAGCTATAAATACACTAATGAAATGCAAACAATGAAAGC-TTT
1 ATCCAACCAAAACAAATTCTTGAAGCTATAAATAAACTAATGAAATGCAAACAA-CAAAGCTTTT
* * * **
65524132 ACCGTAAAGCACAAATCATAACATGGTCCAATTCGGGGGGAAAAAACATCAAGCTAAGAGC
65 ACCATAAAGCACAAATCATAACACGGTCCAATTCAGGGAAAAAAAACATCAAGCTAAGAGC
* * *
65524193 ATCCAACCAAAACAAATTCCTGTAGCTATAAGTAAACTAATGAAATGCAAACAACACAAGCTTTT
1 ATCCAACCAAAACAAATTCTTGAAGCTATAAATAAACTAATGAAATGCAAACAACA-AAGCTTTT
*
65524258 ACCATAAAGCACAAATCATAACACGGTCCACTTCAGGGAAAAAACAACATCAAGCTAAGAGC
65 ACCATAAAGCACAAATCATAACACGGTCCAATTCAGGGAAAAAA-AACATCAAGCTAAGAGC
* * * *
65524320 ATCCACATC-TAAGAAATTCTTCAAGCTATGAAATACAA-TAAT-AAATGCAAACAACAAAAGCT
1 ATCCA-ACCAAAACAAATTCTTGAAGCTAT-AAATA-AACTAATGAAATGCAAACAAC-AAAGCT
65524382 TT
62 TT
65524384 ACCTTTAAGC
Statistics
Matches: 164, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
124 1 0.01
125 52 0.32
126 41 0.25
127 57 0.35
128 11 0.07
129 2 0.01
ACGTcount: A:0.46, C:0.21, G:0.13, T:0.20
Consensus pattern (125 bp):
ATCCAACCAAAACAAATTCTTGAAGCTATAAATAAACTAATGAAATGCAAACAACAAAGCTTTTA
CCATAAAGCACAAATCATAACACGGTCCAATTCAGGGAAAAAAAACATCAAGCTAAGAGC
Found at i:65526065 original size:16 final size:16
Alignment explanation
Indices: 65526041--65526071 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
65526031 GCAAGCCTTT
65526041 AAAACAAAAAAAAAGA
1 AAAACAAAAAAAAAGA
*
65526057 AAAAGAAAAAAAAAG
1 AAAACAAAAAAAAAG
65526072 TATATATAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAACAAAAAAAAAGA
Found at i:65534305 original size:17 final size:18
Alignment explanation
Indices: 65534283--65534323 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
65534273 TTAGAAATTT
65534283 AATAAA-TA-TTAAATAAA
1 AATAAATTATTTAAA-AAA
65534300 AATAAATTATTTAAAAAA
1 AATAAATTATTTAAAAAA
65534318 AATAAA
1 AATAAA
65534324 AAATATGGGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.27
18 11 0.50
19 5 0.23
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAAATTATTTAAAAAA
Found at i:65536346 original size:18 final size:18
Alignment explanation
Indices: 65536319--65536411 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
65536309 TACGACTGTT
65536319 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
65536337 TACGGCACTATTCACATA
1 TACGGTACTATTCACGTA
* *
65536355 CACGGTACTATTCATGTA
1 TACGGTACTATTCACGTA
* *
65536373 TATGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
65536391 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
65536409 TAC
1 TAC
65536412 AGTAGTTGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:65536367 original size:36 final size:36
Alignment explanation
Indices: 65536320--65536411 Score: 139
Period size: 36 Copynumber: 2.6 Consensus size: 36
65536310 ACGACTGTTT
65536320 ACGGTACTATTCACGTATACGGCACTATTCACATAC
1 ACGGTACTATTCACGTATACGGCACTATTCACATAC
* * * *
65536356 ACGGTACTATTCATGTATATGGCACTATTCACGTAT
1 ACGGTACTATTCACGTATACGGCACTATTCACATAC
*
65536392 ACGGTACTGTTCACGTATAC
1 ACGGTACTATTCACGTATAC
65536412 AGTAGTTGGG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (36 bp):
ACGGTACTATTCACGTATACGGCACTATTCACATAC
Found at i:65541030 original size:18 final size:18
Alignment explanation
Indices: 65541003--65541095 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
65540993 TACGACTGTT
65541003 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
65541021 TACGGCACTATTCACATA
1 TACGGTACTATTCACGTA
* *
65541039 CACGGTACTATTCATGTA
1 TACGGTACTATTCACGTA
* * *
65541057 TATGGCACTATTCATGTA
1 TACGGTACTATTCACGTA
*
65541075 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
65541093 TAC
1 TAC
65541096 AGTAGTTGGG
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:65541051 original size:36 final size:36
Alignment explanation
Indices: 65541004--65541095 Score: 130
Period size: 36 Copynumber: 2.6 Consensus size: 36
65540994 ACGACTGTTT
65541004 ACGGTACTATTCACGTATACGGCACTATTCACATAC
1 ACGGTACTATTCACGTATACGGCACTATTCACATAC
* * ** *
65541040 ACGGTACTATTCATGTATATGGCACTATTCATGTAT
1 ACGGTACTATTCACGTATACGGCACTATTCACATAC
*
65541076 ACGGTACTGTTCACGTATAC
1 ACGGTACTATTCACGTATAC
65541096 AGTAGTTGGG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (36 bp):
ACGGTACTATTCACGTATACGGCACTATTCACATAC
Found at i:65548369 original size:22 final size:21
Alignment explanation
Indices: 65548344--65548402 Score: 57
Period size: 22 Copynumber: 2.8 Consensus size: 21
65548334 TATTTTTTTG
65548344 TATTTTTTAAATTTAAGTCACT
1 TATTTTTTAAATTTAAGTCA-T
* *
65548366 TATTTTTATGAGTTT-AGTCAT
1 TATTTTT-TAAATTTAAGTCAT
* *
65548387 TAATTTTTAAAATTAA
1 TATTTTTTAAATTTAA
65548403 AATTTTAAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
20 4 0.14
21 8 0.28
22 12 0.41
23 5 0.17
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (21 bp):
TATTTTTTAAATTTAAGTCAT
Found at i:65558715 original size:15 final size:16
Alignment explanation
Indices: 65558695--65558724 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
65558685 GATTGTAACA
65558695 GTTATATTT-TTTCAT
1 GTTATATTTGTTTCAT
65558710 GTTATATTTGTTTCA
1 GTTATATTTGTTTCA
65558725 ATCGTTCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.20, C:0.07, G:0.10, T:0.63
Consensus pattern (16 bp):
GTTATATTTGTTTCAT
Found at i:65566222 original size:31 final size:31
Alignment explanation
Indices: 65566135--65566222 Score: 72
Period size: 31 Copynumber: 2.9 Consensus size: 31
65566125 TGTATTCATG
** *
65566135 AACTTTAA-TTTGATGCAATCATACACTGGA
1 AACTTTAATTTTGATTAAATCATATACTGGA
* * * * *
65566165 AACTCTAATTGTGGTTCAAAT-GTATACTTGA
1 AACTTTAATTTTGATT-AAATCATATACTGGA
*
65566196 AACTTTAATTTTGATTTAATCATATAC
1 AACTTTAATTTTGATTAAATCATATAC
65566223 ATTTAAAGAA
Statistics
Matches: 42, Mismatches: 13, Indels: 5
0.70 0.22 0.08
Matches are distributed among these distances:
30 10 0.24
31 29 0.69
32 3 0.07
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (31 bp):
AACTTTAATTTTGATTAAATCATATACTGGA
Found at i:65569199 original size:2 final size:2
Alignment explanation
Indices: 65569192--65569221 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
65569182 ACATTACCAA
*
65569192 GT GT GT GT GT GT GT GT GT GT GT GA GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
65569222 TGAAACATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.03, C:0.00, G:0.50, T:0.47
Consensus pattern (2 bp):
GT
Found at i:65569255 original size:25 final size:26
Alignment explanation
Indices: 65569221--65569276 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
65569211 TGTGAGTGTG
*
65569221 TTGAAACATGTT-ATAGTAATAGATC
1 TTGAAACATGTTAATAGTAATAGAGC
65569246 TTGAAACATGTTAATAGTAATAGAGC
1 TTGAAACATGTTAATAGTAATAGAGC
65569272 TTGAA
1 TTGAA
65569277 CTTCCATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 12 0.41
26 17 0.59
ACGTcount: A:0.41, C:0.07, G:0.18, T:0.34
Consensus pattern (26 bp):
TTGAAACATGTTAATAGTAATAGAGC
Found at i:65574732 original size:3 final size:3
Alignment explanation
Indices: 65574724--65574767 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
65574714 TCTCAATGTG
65574724 ATA ATA ATA ATA AT- ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
65574768 TTTAACTACA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:65575357 original size:21 final size:22
Alignment explanation
Indices: 65575333--65575373 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
65575323 ATATTTTTAG
*
65575333 AATATTTAAATA-TCAATATAA
1 AATATTAAAATATTCAATATAA
65575354 AATATTAAAATATTCAATAT
1 AATATTAAAATATTCAATAT
65575374 TATTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AATATTAAAATATTCAATATAA
Found at i:65581639 original size:14 final size:14
Alignment explanation
Indices: 65581593--65581649 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
65581583 AATCACAATC
65581593 AAATTTATATATATA
1 AAATTTATATAT-TA
* * *
65581608 TAATTATATAAAAATA
1 AAATT-TAT-ATATTA
65581624 AAATTTATATATTA
1 AAATTTATATATTA
65581638 AAATTTATATAT
1 AAATTTATATAT
65581650 AACTTTTTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
14 16 0.47
15 7 0.21
16 9 0.26
17 2 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AAATTTATATATTA
Found at i:65597079 original size:28 final size:28
Alignment explanation
Indices: 65597039--65597093 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
65597029 AGGGTTAAAG
65597039 TTGTTATTATGCCAAATTTAAAAGCTAA
1 TTGTTATTATGCCAAATTTAAAAGCTAA
*
65597067 TTGTTATTATGCCAATTTTAAAAGCTA
1 TTGTTATTATGCCAAATTTAAAAGCTA
65597094 CCACGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (28 bp):
TTGTTATTATGCCAAATTTAAAAGCTAA
Found at i:65597207 original size:60 final size:60
Alignment explanation
Indices: 65597133--65597265 Score: 178
Period size: 60 Copynumber: 2.2 Consensus size: 60
65597123 GACGACATTG
* * *
65597133 AATAATTGGGTGATCATTCTATAACTTTTCATAGTTGGGTGACCAAAAAA-AATATATACT
1 AATAGTTGGGTGATCATTCTATAACTTTTCATAATTGAGTGACCAAAAAAGAA-ATATACT
* * * * *
65597193 AATAGTTGGGTGATCGTTTTGTAACTTTTCATAATTGATTGACCAAAAAAGAAATTTACT
1 AATAGTTGGGTGATCATTCTATAACTTTTCATAATTGAGTGACCAAAAAAGAAATATACT
65597253 AATAGTTGGGTGA
1 AATAGTTGGGTGA
65597266 CTACTAGTGT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
60 62 0.97
61 2 0.03
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (60 bp):
AATAGTTGGGTGATCATTCTATAACTTTTCATAATTGAGTGACCAAAAAAGAAATATACT
Found at i:65619279 original size:674 final size:675
Alignment explanation
Indices: 65615347--65626793 Score: 22671
Period size: 675 Copynumber: 17.0 Consensus size: 675
65615337 TTTGTAAATA
65615347 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65615412 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65615477 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65615542 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
*
65615607 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATTTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65615672 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65615737 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65615802 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65615867 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTTATAATAAAATGATTCTCCTTTGAATA
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTA-TTTTTTTTATAATAAAATGATTCTCCTTTGAATA
65615932 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
585 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
65615997 TATTATTCCAAATCATCAACTTTATC
650 TATTATTCCAAATCATCAACTTTATC
65616023 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65616088 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
*
65616153 TGGTTTATTGGCTGTGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65616218 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
*
65616283 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATTTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65616348 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65616413 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65616478 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65616543 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65616608 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65616673 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65616698 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65616763 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65616828 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65616893 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
*
65616958 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATTTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65617023 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65617088 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65617153 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65617218 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65617283 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65617348 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65617373 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65617438 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65617503 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65617568 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65617633 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65617698 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65617763 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65617828 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65617893 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTTATAATAAAATGATTCTCCTTTGAATA
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTA-TTTTTTTTATAATAAAATGATTCTCCTTTGAATA
65617958 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
585 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
65618023 TATTATTCCAAATCATCAACTTTATC
650 TATTATTCCAAATCATCAACTTTATC
65618049 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65618114 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65618179 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65618244 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65618309 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAAT-TTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65618373 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65618438 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65618503 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65618568 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65618633 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65618698 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65618723 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65618788 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65618853 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65618918 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65618983 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65619048 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65619113 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65619178 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65619243 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65619308 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65619373 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65619398 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65619463 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65619528 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65619593 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65619658 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAAT-TTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65619722 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65619787 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65619852 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65619917 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65619982 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65620047 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65620072 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65620137 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65620202 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65620267 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65620332 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65620397 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65620462 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65620527 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65620592 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65620657 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65620722 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65620747 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65620812 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65620877 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65620942 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65621007 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65621072 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65621137 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65621202 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65621267 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65621332 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65621397 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65621422 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65621487 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65621552 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65621617 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65621682 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65621747 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65621812 GAAAGTGTAACCCTCTTATACTTCT--A-----AACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65621870 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65621935 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65622000 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65622065 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65622090 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65622155 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65622220 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65622285 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65622350 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65622415 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65622480 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65622545 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65622610 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65622675 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65622740 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65622765 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65622830 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65622895 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65622960 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65623025 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65623090 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65623155 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65623220 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65623285 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65623350 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65623415 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65623440 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65623505 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65623570 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65623635 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65623700 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65623765 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65623830 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65623895 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65623960 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
65624025 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
586 TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
65624090 ATTATTCCAAATCATCAACTTTATC
651 ATTATTCCAAATCATCAACTTTATC
65624115 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65624180 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65624245 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65624310 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65624375 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65624440 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
* *
65624505 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTTAGCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
*
65624570 TAAATAAAAAGAAGAGAAGAAGAAGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65624635 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTTATAATAAAATGATTCTCCTTTGAATA
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTA-TTTTTTTTATAATAAAATGATTCTCCTTTGAATA
65624700 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
585 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
65624765 TATTATTCCAAATCATCAACTTTATC
650 TATTATTCCAAATCATCAACTTTATC
65624791 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65624856 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65624921 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65624986 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65625051 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65625116 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65625181 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65625246 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
65625311 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTTATAATAAAATGATTCTCCTTTGAATA
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTA-TTTTTTTTATAATAAAATGATTCTCCTTTGAATA
65625376 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
585 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
65625441 TATTATTCCAAATCATCAACTTTATC
650 TATTATTCCAAATCATCAACTTTATC
65625467 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65625532 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65625597 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65625662 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
65625727 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAAT-TTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65625791 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65625856 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65625921 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
* *
65625986 GGAGGGGTCGCCTAAATTTGGAAATTTGTATTTTTTTTTATAATAAAACGATTCTCCTTTGAATA
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTA-TTTTTTTTATAATAAAATGATTCTCCTTTGAATA
65626051 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
585 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
65626116 TATTATTCCAAATCATCAACTTTATC
650 TATTATTCCAAATCATCAACTTTATC
65626142 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
1 CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
65626207 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
66 TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
65626272 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
131 TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
65626337 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
196 ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
*
65626402 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATTTTATTAACCCTTATT
261 TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
65626467 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
326 CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
65626532 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
391 GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
65626597 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
456 TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
*
65626662 GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTTATAATAAAACGATTCTCCTTTGAATA
521 GGAGGGGTCGCCTAAAATTGGAAATTTGTA-TTTTTTTTATAATAAAATGATTCTCCTTTGAATA
65626727 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
585 TTCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGA
65626792 TA
650 TA
65626794 GTAATGTCCT
Statistics
Matches: 10747, Mismatches: 12, Indels: 24
1.00 0.00 0.00
Matches are distributed among these distances:
668 667 0.06
670 1 0.00
673 1 0.00
674 1108 0.10
675 6539 0.61
676 2431 0.23
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (675 bp):
CACCAACATAGTTGAGCTATTGACACGTGTCTATTTATTTGCTTTTTTAGGAATTATTGTTAAAT
TGAAACCAGTAAGCATCTATTTTTATTGTTTTCAGAAGATGAAAATAAATGTGTGTCTTTATATT
TGGTTTATTGGCTATGGGTACTCACTATTCACTCTCGTAAGTTTGAGTCGCAAGCTTTGTACTTG
ATTTATGTCATAAGTTCCAACAAAAGATATAAAATAAATGAAAAAGTATGAAACAAATCATATAA
TTCATATATATTTTTCACGATTCATTATGCAAGTGTTTTTAATTTAAATCTTATTAACCCTTATT
CATATTTATTCTAATATAGAGTTGAATATATTTCGATTATTACTTTATTTTAATTATAAGCGGAT
GAAAGTGTAACCCTCTTATACTTCTAAACCCCTAACCATGTTTTCATTTAAGAAACCACCTTCCA
TAAATAAAAAGAAGAGAAGAAGATGAAGATTGATTGGTTATTGAGCCACTAAAAGAGGCGGCGGA
GGAGGGGTCGCCTAAAATTGGAAATTTGTATTTTTTTTATAATAAAATGATTCTCCTTTGAATAT
TCCAAGCTGTCCATTAGTTTGAATGGTAAAGTCTATATGAAGTATGGATAGTAATGTCTATGGAT
ATTATTCCAAATCATCAACTTTATC
Found at i:65626791 original size:16 final size:16
Alignment explanation
Indices: 65626770--65626801 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
65626760 CTATATGAAG
65626770 TATGGATAGTAATGTC
1 TATGGATAGTAATGTC
65626786 TATGGATAGTAATGTC
1 TATGGATAGTAATGTC
65626802 CTTTGAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (16 bp):
TATGGATAGTAATGTC
Found at i:65629937 original size:21 final size:22
Alignment explanation
Indices: 65629901--65629945 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
65629891 GGTTCCATTT
*
65629901 TTTTCTTTTTTTTTCTGTCTTG
1 TTTTCTTTTATTTTCTGTCTTG
*
65629923 TTTTC-TTTATTTTCTTTCTTG
1 TTTTCTTTTATTTTCTGTCTTG
65629944 TT
1 TT
65629946 CTTTAAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.02, C:0.13, G:0.07, T:0.78
Consensus pattern (22 bp):
TTTTCTTTTATTTTCTGTCTTG
Found at i:65635415 original size:6 final size:6
Alignment explanation
Indices: 65635404--65635429 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
65635394 GTAATGGTAG
65635404 CAGTAA CAGTAA CAGTAA CAGTAA CA
1 CAGTAA CAGTAA CAGTAA CAGTAA CA
65635430 ATATTCAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.19, G:0.15, T:0.15
Consensus pattern (6 bp):
CAGTAA
Found at i:65635464 original size:45 final size:45
Alignment explanation
Indices: 65635413--65635516 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 45
65635403 GCAGTAACAG
65635413 TAACAGTAACAGTAACAATATTCAACACACAAAGTG-CTGAATCT-A
1 TAACAGTAACAGTAACAATATTCAACACACAAAGTGTC-GAAT-TGA
* * * *
65635458 TAACAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATTGG
1 TAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATTGA
65635503 TAACAGTAACAGTA
1 TAACAGTAACAGTA
65635517 GTCGGCATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
44 1 0.02
45 50 0.96
46 1 0.02
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.22
Consensus pattern (45 bp):
TAACAGTAACAGTAACAATATTCAACACACAAAGTGTCGAATTGA
Found at i:65641762 original size:22 final size:20
Alignment explanation
Indices: 65641723--65641778 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 20
65641713 ATTTTATTCT
*
65641723 ATTTTTATTTTTAGAAATTTA
1 ATTTTTATTTTT-TAAATTTA
65641744 ACTTCTTTATTTTTTAAATTTA
1 A-TT-TTTATTTTTTAAATTTA
*
65641766 ATTGTTATTTTTT
1 ATTTTTATTTTTT
65641779 TTTGTTATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 9 0.29
21 3 0.10
22 10 0.32
23 9 0.29
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.66
Consensus pattern (20 bp):
ATTTTTATTTTTTAAATTTA
Found at i:65654623 original size:27 final size:27
Alignment explanation
Indices: 65654593--65654644 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
65654583 TTTAATATAT
65654593 ATATATATACCTATATA-AAAAAAACCC
1 ATATATATA-CTATATATAAAAAAACCC
* *
65654620 ATATGTATATTATATATAAAAAAAC
1 ATATATATACTATATATAAAAAAAC
65654645 TATGCGTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.31
Consensus pattern (27 bp):
ATATATATACTATATATAAAAAAACCC
Found at i:65656281 original size:44 final size:45
Alignment explanation
Indices: 65656205--65656302 Score: 144
Period size: 44 Copynumber: 2.2 Consensus size: 45
65656195 AAGACTTGTA
* **
65656205 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
* *
65656250 TCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
65656294 TCTTCGATC
1 TCTTCGATC
65656303 GATTCCACTA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 32 0.67
45 16 0.33
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (45 bp):
TCTTCGATCTACTTCACCACCAATACAGGAAGACAAGATCTGCTT
Found at i:65656429 original size:44 final size:43
Alignment explanation
Indices: 65656381--65656570 Score: 134
Period size: 44 Copynumber: 4.3 Consensus size: 43
65656371 AAAATTCGCC
* *
65656381 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGGCAAAATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGCAAAATCTG-A
* ** ** ** *
65656425 ATCTTCAATCTATTCCACTGTTGCCCAGGGAGATATAATTACTG-
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGCA-AAAT-CTGA
* * * * *
65656469 -GCTTCAATGTACTCCACT-GTAACTTCAGGGAGGTAAAATCTGA
1 ATCTTCAATCTACTCCACTACT-GCTT-AGGGAGGCAAAATCTGA
* * *
65656512 CATCTTCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTA
1 -ATCTTCAATCTACTCCACTACTGCTTAGGGAGGCAAAATCTG-A
65656557 ATCTTCAATCTACT
1 ATCTTCAATCTACT
65656571 TCGCCACCAG
Statistics
Matches: 108, Mismatches: 29, Indels: 18
0.70 0.19 0.12
Matches are distributed among these distances:
42 4 0.04
43 19 0.18
44 60 0.56
45 21 0.19
46 4 0.04
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGGCAAAATCTGA
Found at i:65656487 original size:132 final size:132
Alignment explanation
Indices: 65656320--65656568 Score: 437
Period size: 132 Copynumber: 1.9 Consensus size: 132
65656310 CTACCGATCG
*
65656320 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAAT-TCGCCATC
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCT-GACATC
65656384 TTCGATCTGCTCCACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTATTCCACTGTTGC
65 TTCGATCTGCTCCACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTATTCCACTGTTGC
65656449 CCA
130 CCA
* * *
65656452 GGGAGATATAATTACTGGCTTCAATGTACTCCACTGTAACTTCAGGGAGGTAAAATCTGACATCT
1 GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCTGACATCT
*
65656517 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAGATCTGTAATCTTCAATCTA
66 TCGATCTGCTCCACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTA
65656569 CTTCGCCACC
Statistics
Matches: 111, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
132 110 0.99
133 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (132 bp):
GGGAGATAGAATTACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCTGACATCT
TCGATCTGCTCCACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTATTCCACTGTTGCC
CA
Found at i:65657939 original size:134 final size:134
Alignment explanation
Indices: 65656653--65657937 Score: 2264
Period size: 134 Copynumber: 9.6 Consensus size: 134
65656643 ACTATCTTTG
*
65656653 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAAAAGGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
65656718 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
65656783 GTAC
131 GTAC
* *
65656787 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
* *
65656852 CTTTGATCTACTTCGCTACCAATATAGGAAGACAGGATCTGGTATCTTTGATCTACTTCACGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
65656917 GTAC
131 GTAC
*
65656921 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAAGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
65656986 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
*
65657051 GTAT
131 GTAC
* *
65657055 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
* * *
65657120 CTTTGATCAACTTCGCTACCAATATAGGAAGCCAGGATCTGGTATCTTTGATCTACTTCACGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
65657185 GTAC
131 GTAC
* *
65657189 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAAAAAGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
*
65657254 CTTTGATCCACTTCGCTGCCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
65657319 GTAC
131 GTAC
* *
65657323 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
* *
65657388 CTTTGATCTACTTCGCTACCAATATAGGAAGACAGGATCTGGTATCTTTGATCTACTTCACGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
65657453 GTAC
131 GTAC
* *
65657457 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAAAAAGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
*
65657522 CTTTGATCCACTTCGCTGCCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
65657587 GTAC
131 GTAC
* *
65657591 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
* * *
65657656 CTTTGATCAACTTCGCTACCAATATAGGAAGCCAGGATCTGGTATCTTTGATCTACTTCACGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
65657721 GTAC
131 GTAC
65657725 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
* * *
65657790 CTTTGATCCACTTCACTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTTAGGCCA
66 CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
65657855 GTAC
131 GTAC
* *
65657859 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTAT
1 ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
* *
65657924 CTTCGATCTACTTC
66 CTTTGATCCACTTC
65657938 ACGCCAGTAC
Statistics
Matches: 1091, Mismatches: 60, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 1091 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (134 bp):
ATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGAATAGGAAGACAAGATCTGGTAT
CTTTGATCCACTTCGCTACCAATATAGGAAGACAGGATCTAGTATCTTTGATCTACTTCACGCCA
GTAC
Found at i:65658135 original size:43 final size:45
Alignment explanation
Indices: 65658087--65658182 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
65658077 CTTAGGGAGG
* * *
65658087 CAAGATCTG-TTTCTTTGATCTACTTCA-CGCCAGTACATGAAGA
1 CAAGATCTGTTTTCTTGGATCTACTTCACCACCAGTACAGGAAGA
**
65658130 CAAGATCTGTTTTCTTGGATCTACTTCACCACCAGTATGGGAAGA
1 CAAGATCTGTTTTCTTGGATCTACTTCACCACCAGTACAGGAAGA
65658175 CAAGATCT
1 CAAGATCT
65658183 TTTGTATTCA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 9 0.20
44 17 0.37
45 20 0.43
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (45 bp):
CAAGATCTGTTTTCTTGGATCTACTTCACCACCAGTACAGGAAGA
Found at i:65659495 original size:44 final size:43
Alignment explanation
Indices: 65659438--65659520 Score: 121
Period size: 44 Copynumber: 1.9 Consensus size: 43
65659428 AACCTCTCCA
* * *
65659438 TTTTTTACTCAAAGCTCCCTTTGTAGGGTTTCACATTGGCCTT
1 TTTTTTACTCAAAGCGCCATTTGTAGGCTTTCACATTGGCCTT
*
65659481 TTTTTTGACTCAAAGCGCCATTTGTAGGCTTTCACCTTGG
1 TTTTTT-ACTCAAAGCGCCATTTGTAGGCTTTCACATTGG
65659521 TCCCACCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
43 6 0.17
44 29 0.83
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (43 bp):
TTTTTTACTCAAAGCGCCATTTGTAGGCTTTCACATTGGCCTT
Found at i:65667127 original size:27 final size:27
Alignment explanation
Indices: 65667097--65667148 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
65667087 AAACTTTAAT
65667097 ATATATATACCTATATA-AAAAAAACCC
1 ATATATATA-CTATATATAAAAAAACCC
* *
65667124 ATATGTATATTATATATAAAAAAAC
1 ATATATATACTATATATAAAAAAAC
65667149 TATGCGTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
27 16 0.73
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.31
Consensus pattern (27 bp):
ATATATATACTATATATAAAAAAACCC
Found at i:65670043 original size:19 final size:19
Alignment explanation
Indices: 65670009--65670060 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
65669999 AAAATATTTA
*
65670009 CTTATAAATATTTTTATAAT
1 CTTATATAT-TTTTTATAAT
*
65670029 TTTATATATTTTTTATAAT
1 CTTATATATTTTTTATAAT
*
65670048 CTTATGTATTTTT
1 CTTATATATTTTT
65670061 ATCAAGAATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 21 0.75
20 7 0.25
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (19 bp):
CTTATATATTTTTTATAAT
Found at i:65672968 original size:15 final size:16
Alignment explanation
Indices: 65672941--65672980 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
65672931 AAATTTGTTT
*
65672941 TTTTAATAAATTT-AAG
1 TTTTAA-AAATTTCAAA
65672957 TTTTAAAAATTTCAAA
1 TTTTAAAAATTTCAAA
65672973 TTTTAAAA
1 TTTTAAAA
65672981 TCCACAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (16 bp):
TTTTAAAAATTTCAAA
Found at i:65677412 original size:39 final size:39
Alignment explanation
Indices: 65677366--65677446 Score: 119
Period size: 39 Copynumber: 2.1 Consensus size: 39
65677356 ATAATTTAAA
**
65677366 TTTATATATT-TCATATATCATAATATTAATGAATTTGAG
1 TTTATATATTCT-ATATATCATAATATTAACAAATTTGAG
*
65677405 TTTATATATTCTATATATTATAATATTAACAAATTTGAG
1 TTTATATATTCTATATATCATAATATTAACAAATTTGAG
65677444 TTT
1 TTT
65677447 TTTTGTATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
39 37 0.97
40 1 0.03
ACGTcount: A:0.38, C:0.05, G:0.06, T:0.51
Consensus pattern (39 bp):
TTTATATATTCTATATATCATAATATTAACAAATTTGAG
Found at i:65683050 original size:12 final size:13
Alignment explanation
Indices: 65683029--65683058 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
65683019 TTAGAGATTA
65683029 AGAGATTGATTGC
1 AGAGATTGATTGC
65683042 AGAGA-TGATTGC
1 AGAGATTGATTGC
65683054 AGAGA
1 AGAGA
65683059 GAGGAGCAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.37, C:0.07, G:0.33, T:0.23
Consensus pattern (13 bp):
AGAGATTGATTGC
Found at i:65686708 original size:14 final size:12
Alignment explanation
Indices: 65686689--65686735 Score: 58
Period size: 12 Copynumber: 3.7 Consensus size: 12
65686679 CCCCTATCTG
65686689 TTATTAGTTATTT
1 TTATTA-TTATTT
65686702 ATTATTAATTATTT
1 -TTATT-ATTATTT
*
65686716 TTACTATTATTT
1 TTATTATTATTT
65686728 TTATTATT
1 TTATTATT
65686736 GTATAATATC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 14 0.47
13 4 0.13
14 11 0.37
15 1 0.03
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (12 bp):
TTATTATTATTT
Found at i:65686942 original size:27 final size:26
Alignment explanation
Indices: 65686888--65686950 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
65686878 TATATATATT
65686888 TAAATACATAT-TACTTTAATTTTCA
1 TAAATACATATATACTTTAATTTTCA
*
65686913 TAAATATATATATACATTTACATTTT-A
1 TAAATACATATATAC-TTTA-ATTTTCA
65686940 T-AATACATATA
1 TAAATACATATA
65686951 CATTTTCCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
25 10 0.30
26 12 0.36
27 6 0.18
28 5 0.15
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (26 bp):
TAAATACATATATACTTTAATTTTCA
Found at i:65686947 original size:18 final size:19
Alignment explanation
Indices: 65686919--65686956 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
65686909 TTCATAAATA
*
65686919 TATATATACATTTACATTT
1 TATATATACATATACATTT
65686938 TATA-ATACATATACATTT
1 TATATATACATATACATTT
65686956 T
1 T
65686957 CCAAACTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50
Consensus pattern (19 bp):
TATATATACATATACATTT
Found at i:65698657 original size:81 final size:83
Alignment explanation
Indices: 65698558--65698709 Score: 238
Period size: 81 Copynumber: 1.9 Consensus size: 83
65698548 TACACATATG
*
65698558 TATAAAAAAATATGAAATATGCATTTATATATATACACATGTATATAAAAAAATTAAGAAATA-A
1 TATAAAAAAATATGAAATATGCATTTATATATATACACATATATATAAAAAAA-TAAGAAATATA
65698622 -AAAAATGTAAAGTATGTA
65 TAAAAATGTAAAGTATGTA
* * *
65698640 TATAAAAAAAT-TGAAATATGCATTTATATATATACACATATGTATAGAAAAATATGAAATATAT
1 TATAAAAAAATATGAAATATGCATTTATATATATACACATATATATAAAAAAATAAGAAATATAT
65698704 AAAAAT
66 AAAAAT
65698710 ATATGAATGT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
80 8 0.12
81 39 0.61
82 17 0.27
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.32
Consensus pattern (83 bp):
TATAAAAAAATATGAAATATGCATTTATATATATACACATATATATAAAAAAATAAGAAATATAT
AAAAATGTAAAGTATGTA
Done.