Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 22 of 211
Found at i:6799300 original size:21 final size:20
Alignment explanation
Indices: 6799257--6799301 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
6799247 TTTAATATGT
*
6799257 TTTTTAATAATTTCTAATTA
1 TTTTTAATAATTTCTAATAA
6799277 TTTTTAATAAATTT-TAAATAA
1 TTTTTAAT-AATTTCT-AATAA
6799298 TTTT
1 TTTT
6799302 CCACATATCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTAATAATTTCTAATAA
Found at i:6799301 original size:20 final size:20
Alignment explanation
Indices: 6799258--6799301 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
6799248 TTAATATGTT
* *
6799258 TTTTAATAATTTCTAATTAT
1 TTTTAATAATTTCTAAATAA
6799278 TTTTAATAAATTT-TAAATAA
1 TTTTAAT-AATTTCTAAATAA
6799298 TTTT
1 TTTT
6799302 CCACATATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTAATAATTTCTAAATAA
Found at i:6800615 original size:14 final size:14
Alignment explanation
Indices: 6800598--6800626 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6800588 AATCAACTTC
6800598 TAACAATCCATGCT
1 TAACAATCCATGCT
6800612 TAACAATCCATGCT
1 TAACAATCCATGCT
6800626 T
1 T
6800627 TAACTCTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (14 bp):
TAACAATCCATGCT
Found at i:6801367 original size:56 final size:56
Alignment explanation
Indices: 6801306--6801460 Score: 211
Period size: 60 Copynumber: 2.7 Consensus size: 56
6801296 TTTTATATAA
* *
6801306 TGCCATGGGTCTTGACCACATGGTCTTACATACATTCATTCAGTCATATCATATCT
1 TGCCATGGGTCTTAACCTCATGGTCTTACATACATTCATTCAGTCATATCATATCT
* * *
6801362 TGCCATGGGTTTTAACCTCATGATCTTACATACATTCATTCATTCAGTCATTTCATATCT
1 TGCCATGGGTCTTAACCTCATGGTCTTACAT--A--CATTCATTCAGTCATATCATATCT
* *
6801422 TGCCATGGGTCTTAACCTCATGGTCTTACAAATATTCAT
1 TGCCATGGGTCTTAACCTCATGGTCTTACATACATTCAT
6801461 GTATCACGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
56 33 0.38
58 2 0.02
60 51 0.59
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (56 bp):
TGCCATGGGTCTTAACCTCATGGTCTTACATACATTCATTCAGTCATATCATATCT
Found at i:6805817 original size:14 final size:14
Alignment explanation
Indices: 6805800--6805829 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
6805790 CAACAAGATA
6805800 ATATTAACATGACC
1 ATATTAACATGACC
6805814 ATATTAACATGACC
1 ATATTAACATGACC
6805828 AT
1 AT
6805830 TTCCAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (14 bp):
ATATTAACATGACC
Found at i:6809575 original size:22 final size:23
Alignment explanation
Indices: 6809534--6809581 Score: 64
Period size: 21 Copynumber: 2.1 Consensus size: 23
6809524 GTAGTCTTTG
*
6809534 CTTTACTTTTGTTAATTTAT-CA
1 CTTTACTTTTGTTAAATTATGCA
6809556 CTTTA-TTTTGTTAACATTATGCA
1 CTTTACTTTTGTTAA-ATTATGCA
6809579 CTT
1 CTT
6809582 AGTTTAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 9 0.39
22 9 0.39
23 5 0.22
ACGTcount: A:0.23, C:0.15, G:0.06, T:0.56
Consensus pattern (23 bp):
CTTTACTTTTGTTAAATTATGCA
Found at i:6815515 original size:14 final size:15
Alignment explanation
Indices: 6815493--6815569 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
6815483 CAATCAAACA
6815493 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
6815507 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
6815522 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
6815542 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
6815556 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
6815570 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:6815534 original size:20 final size:20
Alignment explanation
Indices: 6815509--6815548 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
6815499 AATATTTTCC
*
6815509 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
6815529 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
6815549 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:6815554 original size:34 final size:35
Alignment explanation
Indices: 6815497--6815563 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
6815487 CAAACACCAG
*
6815497 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
6815532 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
6815564 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:6815570 original size:14 final size:14
Alignment explanation
Indices: 6815532--6815571 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
6815522 ACAGAAAAGT
*
6815532 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
6815546 AAATCATTTTACGG
1 AAAACATTTTACAG
6815560 AAAACATTTTAC
1 AAAACATTTTAC
6815572 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:6828712 original size:15 final size:16
Alignment explanation
Indices: 6828677--6828713 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
6828667 TGTACTATTC
6828677 CTTTTCTTTCTTTCTAT
1 CTTTT-TTTCTTTCTAT
6828694 -TTTTTTTCTTTCT-T
1 CTTTTTTTCTTTCTAT
6828708 CTTTTT
1 CTTTTT
6828714 ACTTCTTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.05
15 14 0.74
16 4 0.21
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (16 bp):
CTTTTTTTCTTTCTAT
Found at i:6829571 original size:42 final size:42
Alignment explanation
Indices: 6829512--6829635 Score: 160
Period size: 42 Copynumber: 3.0 Consensus size: 42
6829502 TGCTTTAAAA
* * *
6829512 CCACACGGGTAAGGACATGAGTGTGTGCCTAGGCCGTGTGGG
1 CCACACGGGTAAGGACATGAGCGTGTGCCCAGGCCGTGTGAG
* * *
6829554 CCACACAGGCAAGGACATGGGCGTGTGCCCAGGCCGTGTGAG
1 CCACACGGGTAAGGACATGAGCGTGTGCCCAGGCCGTGTGAG
* *
6829596 CCACACGGGTAAGGACAT-AGGCATGTGTCCAGGCCGTGTG
1 CCACACGGGTAAGGACATGA-GCGTGTGCCCAGGCCGTGTG
6829636 GCGTATATAA
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.21, C:0.25, G:0.38, T:0.16
Consensus pattern (42 bp):
CCACACGGGTAAGGACATGAGCGTGTGCCCAGGCCGTGTGAG
Found at i:6835325 original size:43 final size:43
Alignment explanation
Indices: 6835295--6835419 Score: 137
Period size: 43 Copynumber: 2.9 Consensus size: 43
6835285 TATAATCTCG
* *
6835295 TATCGATGCCAATAGCCCAGCCATGGTCTTACACGAAATCATA
1 TATCGATGCAAATAGCCCAGACATGGTCTTACACGAAATCATA
* * *
6835338 TATCGATGCAAATATCCCAGACATGGTCTTATACGAAGTC-TCA
1 TATCGATGCAAATAGCCCAGACATGGTCTTACACGAAATCAT-A
* * * * *
6835381 TATCAATGC-CATATCCCAGATATGGTCTTACACGTAATC
1 TATCGATGCAAATAGCCCAGACATGGTCTTACACGAAATC
6835420 TCGGTAACCC
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
42 26 0.37
43 44 0.63
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
TATCGATGCAAATAGCCCAGACATGGTCTTACACGAAATCATA
Found at i:6839515 original size:42 final size:42
Alignment explanation
Indices: 6839453--6839554 Score: 150
Period size: 42 Copynumber: 2.4 Consensus size: 42
6839443 TGCTTTAAAA
* * *
6839453 CTACACGGGAAAGGATATGGGTATGTTCCTAGGCCATGTGAG
1 CTACACGGGCAAGGACATGGGTATGTGCCTAGGCCATGTGAG
* *
6839495 CTACAAGGGCAAGGACATGGGTATGTGCCTAGGCCGTGTGAG
1 CTACACGGGCAAGGACATGGGTATGTGCCTAGGCCATGTGAG
*
6839537 CCACACGGGCAAGGACAT
1 CTACACGGGCAAGGACAT
6839555 AGGCATATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.26, C:0.21, G:0.34, T:0.19
Consensus pattern (42 bp):
CTACACGGGCAAGGACATGGGTATGTGCCTAGGCCATGTGAG
Found at i:6839571 original size:42 final size:41
Alignment explanation
Indices: 6839463--6839576 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 41
6839453 CTACACGGGA
* * * *
6839463 AAGGATATGGGTATGTTCCTAGGCCATGTGAGCTACAAGGGC
1 AAGGACATGGATATG-TCCTAGGCCGTGTGAGCCACAAGGGC
* *
6839505 AAGGACATGGGTATGTGCCTAGGCCGTGTGAGCCACACGGGC
1 AAGGACATGGATATGT-CCTAGGCCGTGTGAGCCACAAGGGC
6839547 AAGGACATAGGCATATGTCC-AGGCCGTGTG
1 AAGGACAT-GG-ATATGTCCTAGGCCGTGTG
6839577 GCGTATATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
41 1 0.02
42 54 0.84
43 4 0.06
44 5 0.08
ACGTcount: A:0.25, C:0.20, G:0.35, T:0.20
Consensus pattern (41 bp):
AAGGACATGGATATGTCCTAGGCCGTGTGAGCCACAAGGGC
Found at i:6840720 original size:22 final size:24
Alignment explanation
Indices: 6840694--6840737 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
6840684 GAAAAATATT
6840694 AAATAT-ATA-TTTTTTATTTTTA
1 AAATATAATAGTTTTTTATTTTTA
6840716 AAATATAATAGTTTTTTATTTT
1 AAATATAATAGTTTTTTATTTT
6840738 AAGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
AAATATAATAGTTTTTTATTTTTA
Found at i:6840883 original size:68 final size:66
Alignment explanation
Indices: 6840804--6841004 Score: 276
Period size: 59 Copynumber: 3.1 Consensus size: 66
6840794 TCAAGTTTGT
* *
6840804 TTTACTAATCAAATGTTAGATTTTGTTCCAACATTTAATACAATTAATACAAATAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATT-CAACA-TTAATACAATTAATACAATTAATAATTTGAT
6840869 AAA
64 AAA
6840872 TTTACTAATCAAATGTTAGATTTTATT--AC----A-ACAATTAATACAATTAATAATTTGATAA
1 TTTACTAATCAAATGTTAGATTTTATTCAACATTAATACAATTAATACAATTAATAATTTGATAA
6840930 A
66 A
6840931 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATT-CAAC-ATTAATACAATTAATACAATTAATAATTTGAT
*
6840994 AAT
64 AAA
6840997 TTTACTAA
1 TTTACTAA
6841005 CAATTAATTT
Statistics
Matches: 121, Mismatches: 3, Indels: 20
0.84 0.02 0.14
Matches are distributed among these distances:
59 55 0.45
60 1 0.01
62 2 0.02
65 2 0.02
66 27 0.22
67 2 0.02
68 32 0.26
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (66 bp):
TTTACTAATCAAATGTTAGATTTTATTCAACATTAATACAATTAATACAATTAATAATTTGATAA
A
Found at i:6841014 original size:16 final size:16
Alignment explanation
Indices: 6840993--6841034 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
6840983 AATAATTTGA
*
6840993 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
6841009 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
6841025 TAGTTTTAAT
1 TAATTTTAAT
6841035 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:6841018 original size:22 final size:23
Alignment explanation
Indices: 6841008--6841063 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 23
6840998 TTACTAACAA
* * *
6841008 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
6841030 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
6841053 TTAATTTTAAT
1 TTAATTTTAAT
6841064 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:6842030 original size:10 final size:10
Alignment explanation
Indices: 6842015--6842044 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
6842005 GCCAATCCCC
6842015 TCCTACTCCT
1 TCCTACTCCT
6842025 TCCTACTCCT
1 TCCTACTCCT
*
6842035 TCCTCCTCCT
1 TCCTACTCCT
6842045 ACCTTGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.07, C:0.53, G:0.00, T:0.40
Consensus pattern (10 bp):
TCCTACTCCT
Found at i:6848832 original size:6 final size:6
Alignment explanation
Indices: 6848815--6848857 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
6848805 TTCTCTATTA
*
6848815 CGATCC CAATCC CGATCC CGATCC CGATCC CGATCC CGATCC C
1 CGATCC CGATCC CGATCC CGATCC CGATCC CGATCC CGATCC C
6848858 TGCTTCTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.19, C:0.51, G:0.14, T:0.16
Consensus pattern (6 bp):
CGATCC
Found at i:6854528 original size:17 final size:19
Alignment explanation
Indices: 6854506--6854543 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
6854496 AAAATTATAT
6854506 ATATTGG-TTTA-TAAAAA
1 ATATTGGATTTATTAAAAA
6854523 ATATTGGATTTTATTAAAAA
1 ATATTGGA-TTTATTAAAAA
6854543 A
1 A
6854544 AAAAATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.39
19 4 0.22
20 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (19 bp):
ATATTGGATTTATTAAAAA
Found at i:6855556 original size:18 final size:18
Alignment explanation
Indices: 6855530--6855790 Score: 161
Period size: 18 Copynumber: 14.8 Consensus size: 18
6855520 CGATCAGATC
* *
6855530 AAAATACGAGAATTTTTA
1 AAAACACGAGAATTTTTG
6855548 AAAACACGA-AGATTTTTG
1 AAAACACGAGA-ATTTTTG
** **
6855566 -AAACATTTA-TTTTTTTG
1 AAAACA-CGAGAATTTTTG
*
6855583 AAAACACGAAAAATTTTT-
1 AAAACACG-AGAATTTTTG
*
6855601 AAAACACGAGAATTTTAG
1 AAAACACGAGAATTTTTG
* * * *
6855619 -AGACACGAAAATTCTTA
1 AAAACACGAGAATTTTTG
* * *
6855636 AAAATACAAAAATTTTTG
1 AAAACACGAGAATTTTTG
6855654 AAAACACG-GAAATTTTT-
1 AAAACACGAG-AATTTTTG
*
6855671 AAAACACGGGAA-TTTTG
1 AAAACACGAGAATTTTTG
* *
6855688 AAAACATGAAAATTTTTG
1 AAAACACGAGAATTTTTG
6855706 -AAACACCG-GAA-TTTTG
1 AAAACA-CGAGAATTTTTG
* *
6855722 AAAACACGAGGATTCTTG
1 AAAACACGAGAATTTTTG
*
6855740 AAAACACGA-ATATTTTTT
1 AAAACACGAGA-ATTTTTG
6855758 AAAACACG-GACATTTTTG
1 AAAACACGAGA-ATTTTTG
* *
6855776 AAAATACGAAAATTT
1 AAAACACGAGAATTT
6855791 GAAATACGGA
Statistics
Matches: 186, Mismatches: 39, Indels: 36
0.71 0.15 0.14
Matches are distributed among these distances:
16 11 0.06
17 64 0.34
18 105 0.56
19 6 0.03
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (18 bp):
AAAACACGAGAATTTTTG
Found at i:6855637 original size:34 final size:34
Alignment explanation
Indices: 6855578--6855794 Score: 172
Period size: 34 Copynumber: 6.2 Consensus size: 34
6855568 ACATTTATTT
6855578 TTTTGAAAACACGAAAAATTTTTAAAACACGAGAA
1 TTTTGAAAACACG-AAAATTTTTAAAACACGAGAA
* * * * *
6855613 TTTT-AGAGACACGAAAATTCTTAAAAATACAAAAA
1 TTTTGA-AAACACGAAAATT-TTTAAAACACGAGAA
* *
6855648 TTTTTGAAAACACGGAAATTTTTAAAACACGGGAA
1 -TTTTGAAAACACGAAAATTTTTAAAACACGAGAA
* *
6855683 TTTTGAAAACATGAAAATTTTTGAAACACCG-GAA
1 TTTTGAAAACACGAAAATTTTTAAAACA-CGAGAA
** *
6855717 TTTTGAAAACACGAGGATTCTTGAAAACACGA-ATA
1 TTTTGAAAACACGAAAATT-TTTAAAACACGAGA-A
* * * *
6855752 TTTTTTAAAACACGGACATTTTTGAAAATACGA-AA
1 -TTTTGAAAACACGAAAATTTTT-AAAACACGAGAA
*
6855787 ATTTGAAA
1 TTTTGAAA
6855795 TACGGAAATT
Statistics
Matches: 144, Mismatches: 28, Indels: 21
0.75 0.15 0.11
Matches are distributed among these distances:
34 60 0.42
35 44 0.31
36 39 0.27
37 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.29
Consensus pattern (34 bp):
TTTTGAAAACACGAAAATTTTTAAAACACGAGAA
Found at i:6855797 original size:15 final size:16
Alignment explanation
Indices: 6855772--6855804 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
6855762 CACGGACATT
6855772 TTTGAAAATACGAAAA
1 TTTGAAAATACGAAAA
*
6855788 TTTG-AAATACGGAAA
1 TTTGAAAATACGAAAA
6855803 TT
1 TT
6855805 ATTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.30
Consensus pattern (16 bp):
TTTGAAAATACGAAAA
Found at i:6856675 original size:7 final size:8
Alignment explanation
Indices: 6856659--6856708 Score: 57
Period size: 8 Copynumber: 6.4 Consensus size: 8
6856649 TTTCTTTTTC
6856659 TTTTATTT
1 TTTTATTT
6856667 TTTTATTT
1 TTTTATTT
6856675 TTTTATTT
1 TTTTATTT
* *
6856683 TTTTCTTC
1 TTTTATTT
*
6856691 TTTT-TCT
1 TTTTATTT
*
6856698 TTCTATTT
1 TTTTATTT
6856706 TTT
1 TTT
6856709 CTTTCTTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
7 4 0.12
8 30 0.88
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTATTT
Found at i:6856675 original size:13 final size:13
Alignment explanation
Indices: 6856653--6856739 Score: 58
Period size: 13 Copynumber: 6.7 Consensus size: 13
6856643 GATGTATTTC
6856653 TTTTTCTTTTATT
1 TTTTTCTTTTATT
*
6856666 TTTTTATTTT-TT
1 TTTTTCTTTTATT
* *
6856678 TATTT-TTTTCTT
1 TTTTTCTTTTATT
6856690 CTTTTTCTTTCTA-T
1 -TTTTTCTTT-TATT
6856704 TTTTTCTTTCT-TT
1 TTTTTCTTT-TATT
6856717 TTCTTTCTCTTT-TT
1 TT-TTTCT-TTTATT
*
6856731 TCTTTCTTT
1 TTTTTCTTT
6856740 CTTCTTCTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
11 4 0.06
12 10 0.16
13 32 0.52
14 13 0.21
15 3 0.05
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTCTTTTATT
Found at i:6856713 original size:4 final size:4
Alignment explanation
Indices: 6856693--6856742 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
6856683 TTTTCTTCTT
* *
6856693 TTTC TTTC TATTT TTTC TTTC -TT- TTTC TTTC TCTTT TTTC TTTC TTTC
1 TTTC TTTC T-TTC TTTC TTTC TTTC TTTC TTTC T-TTC TTTC TTTC TTTC
6856741 TT
1 TT
6856743 CTTCTTCCTT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
3 4 0.11
4 28 0.74
5 6 0.16
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:6856747 original size:23 final size:23
Alignment explanation
Indices: 6856681--6856745 Score: 105
Period size: 23 Copynumber: 2.8 Consensus size: 23
6856671 ATTTTTTTAT
6856681 TTTTTTC-TTCTTTTTCTTTCTA
1 TTTTTTCTTTCTTTTTCTTTCTA
*
6856703 TTTTTTCTTTCTTTTTCTTTCTC
1 TTTTTTCTTTCTTTTTCTTTCTA
6856726 TTTTTTCTTTCTTTCTTCTT
1 TTTTTTCTTTCTTT-TTCTT
6856746 CTTCCTTCCC
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
22 7 0.17
23 28 0.70
24 5 0.12
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTTTCTTTCTTTTTCTTTCTA
Found at i:6856888 original size:20 final size:20
Alignment explanation
Indices: 6856840--6856881 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
6856830 CTTCTTTCTT
* *
6856840 CTTCTCTTTCTTCTTGGCTG
1 CTTCTTTTTCTTCTTGGCTA
*
6856860 CTTCTTTTTCTTCTTGGTTA
1 CTTCTTTTTCTTCTTGGCTA
6856880 CT
1 CT
6856882 GTTTTTTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.02, C:0.26, G:0.12, T:0.60
Consensus pattern (20 bp):
CTTCTTTTTCTTCTTGGCTA
Found at i:6857048 original size:23 final size:23
Alignment explanation
Indices: 6857004--6857048 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
6856994 GCCCTTTGGC
* *
6857004 TTGCTGCTTTTTGTTTGATTTTT
1 TTGCTGCTTTTTCTTAGATTTTT
6857027 TTGCTGCTGTTTTCTTAG-TTTT
1 TTGCTGCT-TTTTCTTAGATTTT
6857049 CTTTCTTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.04, C:0.11, G:0.18, T:0.67
Consensus pattern (23 bp):
TTGCTGCTTTTTCTTAGATTTTT
Found at i:6857377 original size:59 final size:59
Alignment explanation
Indices: 6857280--6857441 Score: 161
Period size: 59 Copynumber: 2.7 Consensus size: 59
6857270 GCTTCTGGGG
* * * * *
6857280 CAAAAGTGT-AATTTTAGCAAAA-ATACGGGCCAAAATGTAATTTATTGATAGTTTAAGGGT
1 CAAAA-TGTAAATTTTAG-AAAAGTTAAGGGTCAAAATGTAATTT-TAGAAAGTTTAAGGGT
* * **
6857340 CAAAGTG-AAATTTT-GAAAAGTCTAAGGGTCGAAATGTAATTTTAGAAAGTTTTGGGGT
1 CAAAATGTAAATTTTAGAAAAGT-TAAGGGTCAAAATGTAATTTTAGAAAGTTTAAGGGT
*
6857398 CAAAATGTAAATTTTAGAAAAGTTTAGGGTCAAAATGTGAATTT
1 CAAAATGTAAATTTTAGAAAAGTTAAGGGTCAAAATGT-AATTT
6857442 CGAAAAGTAC
Statistics
Matches: 84, Mismatches: 12, Indels: 12
0.78 0.11 0.11
Matches are distributed among these distances:
57 4 0.05
58 19 0.23
59 45 0.54
60 16 0.19
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.33
Consensus pattern (59 bp):
CAAAATGTAAATTTTAGAAAAGTTAAGGGTCAAAATGTAATTTTAGAAAGTTTAAGGGT
Found at i:6857413 original size:30 final size:29
Alignment explanation
Indices: 6857280--6857449 Score: 127
Period size: 29 Copynumber: 5.8 Consensus size: 29
6857270 GCTTCTGGGG
* *
6857280 CAAAAGTGTAATTTTAGCAAAA--ATACGGGC
1 CAAAA-TGTAATTTTAG-AAAAGTTTA-GGGT
* *
6857310 CAAAATGTAATTTATTG-ATAGTTTAAGGGT
1 CAAAATGTAATTT-TAGAAAAGTTT-AGGGT
* * *
6857340 CAAAGTGAAATTTT-GAAAAGTCTAAGGGT
1 CAAAATGTAATTTTAGAAAAGT-TTAGGGT
* *
6857369 CGAAATGTAATTTTAG-AAAGTTTTGGGGT
1 CAAAATGTAATTTTAGAAAAG-TTTAGGGT
6857398 CAAAATGTAAATTTTAGAAAAGTTTAGGGT
1 CAAAATGT-AATTTTAGAAAAGTTTAGGGT
*
6857428 CAAAATGTGAA-TTTCGAAAAGT
1 CAAAATGT-AATTTTAGAAAAGT
6857450 ACAGGGGTTA
Statistics
Matches: 113, Mismatches: 17, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
28 3 0.03
29 55 0.49
30 50 0.44
31 5 0.04
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (29 bp):
CAAAATGTAATTTTAGAAAAGTTTAGGGT
Found at i:6857457 original size:60 final size:58
Alignment explanation
Indices: 6857336--6857468 Score: 135
Period size: 60 Copynumber: 2.2 Consensus size: 58
6857326 GATAGTTTAA
* * * ***
6857336 GGGTCAAAGTGAAATTTTGAAAAGTCTAAGGGTCGAAATGTAATTTTAGAAAGTTTTG
1 GGGTCAAAATGAAATTTTGAAAAGTCTAAGGGTCAAAATGTAATTTGAGAAAGTACAG
*
6857394 GGGTCAAAATGTAAATTTTAGAAAAGT-TTAGGGTCAAAATGTGAATTTCGA-AAAGTACAG
1 GGGTCAAAATG-AAATTTT-GAAAAGTCTAAGGGTCAAAATGT-AATTT-GAGAAAGTACAG
*
6857454 GGGTTAAAATTGAAA
1 GGGTCAAAA-TGAAA
6857469 AAAAAATTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
58 10 0.16
59 20 0.32
60 29 0.47
61 3 0.05
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (58 bp):
GGGTCAAAATGAAATTTTGAAAAGTCTAAGGGTCAAAATGTAATTTGAGAAAGTACAG
Found at i:6857463 original size:30 final size:31
Alignment explanation
Indices: 6857336--6857467 Score: 93
Period size: 29 Copynumber: 4.5 Consensus size: 31
6857326 GATAGTTTAA
*
6857336 GGGTC-AAA-GTGAAATTTT-GAAAAGT-CTAA
1 GGGTCAAAATGTG-AATTTTAGAAAAGTAC-AG
* ***
6857365 GGGTCGAAATGT-AATTTTAG-AAAGTTTTG
1 GGGTCAAAATGTGAATTTTAGAAAAGTACAG
* **
6857394 GGGTCAAAATGTAAATTTTAGAAAAGTTTA-
1 GGGTCAAAATGTGAATTTTAGAAAAGTACAG
*
6857424 GGGTCAAAATGTGAA-TTTCGAAAAGTACAG
1 GGGTCAAAATGTGAATTTTAGAAAAGTACAG
*
6857454 GGGTTAAAAT-TGAA
1 GGGTCAAAATGTGAA
6857468 AAAAAAATTA
Statistics
Matches: 86, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
29 42 0.49
30 35 0.41
31 9 0.10
ACGTcount: A:0.39, C:0.05, G:0.25, T:0.30
Consensus pattern (31 bp):
GGGTCAAAATGTGAATTTTAGAAAAGTACAG
Found at i:6857944 original size:78 final size:78
Alignment explanation
Indices: 6857646--6858231 Score: 596
Period size: 78 Copynumber: 7.6 Consensus size: 78
6857636 GGCGTGCGAC
* * * * * * *
6857646 CCGAGACTCAACTCACCTCTTGGATTATGAGTTGA-TCTTCGAAAAACA-AAA-AT-AAA-AAAT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAAT
* *
6857706 ACCTCGACATGTGCC
66 ACCTCGGCATG-G-T
* * *
6857721 CCGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTGAAAAACATGAA-TT-GAA-AAAT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAAT
* **
6857782 ACCTCGGCGTGAC
66 ACCTCGGCATGGT
*
6857795 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTTAAAAGAAAT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAAT
6857859 ACCTCGGCATGGT
66 ACCTCGGCATGGT
* *
6857872 CCAAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAAT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAAT
6857937 ACCTCGGCATGGT
66 ACCTCGGCATGGT
* * *
6857950 TCAAGGCT-AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACTTAAATTTAAAAGAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACATAAATTTAAAAGAAA
6858014 TACCTCGGCATGGT
65 TACCTCGGCATGGT
* *
6858028 CCGAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTTTTGAAAAAAAATAGAAATTTAAAAG
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAAACAT--AAATTTAAAAG
* * *
6858093 AAATACCTCAGCGT-GA
62 AAATACCTCGGCATGGT
* * * ****
6858109 CCTGAGGCTCAACTCACCTATCGTATTATGAGTTGATTTAAAAAAAAAGACAGT-AA-TT--AA-
1 CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTTGAAAA-ACA-TAAATTTAAAAG
* * **
6858169 AAATACCTCAGCGTGAC
62 AAATACCTCGGCATGGT
* *
6858186 CCGAGGCTCAACTCACCTCT-GTATTATGAGTTGATTTTTTGAAAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
6858232 AAACAGAATT
Statistics
Matches: 448, Mismatches: 48, Indels: 32
0.85 0.09 0.06
Matches are distributed among these distances:
73 1 0.00
74 54 0.12
75 62 0.14
76 51 0.11
77 76 0.17
78 96 0.21
79 35 0.08
80 8 0.02
81 10 0.02
82 54 0.12
83 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (78 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACATAAATTTAAAAGAAAT
ACCTCGGCATGGT
Found at i:6859152 original size:16 final size:15
Alignment explanation
Indices: 6859133--6859204 Score: 58
Period size: 15 Copynumber: 4.9 Consensus size: 15
6859123 TTTTTTCTTT
6859133 TTTTTTGTTTTTTCCC
1 TTTTTTGTTTTTT-CC
**
6859149 TTTTTTGTTTTTTTG
1 TTTTTTGTTTTTTCC
*
6859164 TTTTTTGTTTTGT-C
1 TTTTTTGTTTTTTCC
* * **
6859178 TGTTTT-TTTTCTAT
1 TTTTTTGTTTTTTCC
6859192 TTTTTTGTTTTTT
1 TTTTTTGTTTTTT
6859205 AAGCATAATA
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
13 5 0.11
14 10 0.22
15 17 0.38
16 13 0.29
ACGTcount: A:0.01, C:0.07, G:0.10, T:0.82
Consensus pattern (15 bp):
TTTTTTGTTTTTTCC
Found at i:6859159 original size:6 final size:7
Alignment explanation
Indices: 6859133--6859204 Score: 58
Period size: 7 Copynumber: 9.9 Consensus size: 7
6859123 TTTTTTCTTT
6859133 TTTTTTG
1 TTTTTTG
*
6859140 TTTTTTCCC
1 TTTTTT--G
6859149 TTTTTTG
1 TTTTTTG
6859156 TTTTTTTG
1 -TTTTTTG
6859164 TTTTTTG
1 TTTTTTG
6859171 TTTTGTCTG
1 TTTT-T-TG
6859180 TTTTTT-
1 TTTTTTG
* *
6859186 TTCTAT-
1 TTTTTTG
6859192 TTTTTTG
1 TTTTTTG
6859199 TTTTTT
1 TTTTTT
6859205 AAGCATAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
6 8 0.15
7 24 0.45
8 9 0.17
9 12 0.23
ACGTcount: A:0.01, C:0.07, G:0.10, T:0.82
Consensus pattern (7 bp):
TTTTTTG
Found at i:6859181 original size:24 final size:24
Alignment explanation
Indices: 6859124--6859186 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 24
6859114 CATCTTGATT
*
6859124 TTTTTCTTTTTTTTTGTTTTTTCCC
1 TTTTTCTGTTTTTTTGTTTTTT-CC
*
6859149 TTTTT-TGTTTTTTTGTTTTTT-G
1 TTTTTCTGTTTTTTTGTTTTTTCC
6859171 TTTTGTCTGTTTTTTT
1 TTTT-TCTGTTTTTTT
6859187 TCTATTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
22 4 0.12
23 1 0.03
24 24 0.71
25 5 0.15
ACGTcount: A:0.00, C:0.08, G:0.10, T:0.83
Consensus pattern (24 bp):
TTTTTCTGTTTTTTTGTTTTTTCC
Found at i:6864645 original size:18 final size:18
Alignment explanation
Indices: 6864624--6864862 Score: 142
Period size: 18 Copynumber: 13.6 Consensus size: 18
6864614 AAATAAGAGA
*
6864624 ATTTTTAAAAACACGAAG
1 ATTTTTGAAAACACGAAG
*** *
6864642 ATTTTTG-AAACATTTAT
1 ATTTTTGAAAACACGAAG
* *
6864659 TTTTTTGAAAACACGAAAA
1 ATTTTTGAAAACACG-AAG
6864678 ATTTTT-AAAACACG-AG
1 ATTTTTGAAAACACGAAG
* * * *
6864694 AATTTT-AGAGACATGAAA
1 ATTTTTGA-AAACACGAAG
**
6864712 ATTCTTAAAAATACAC-AA-
1 ATT-TTTGAAA-ACACGAAG
* *
6864730 TTTTTTGAAAACACGAAA
1 ATTTTTGAAAACACGAAG
6864748 ATTTTT-AAAACACGGAA-
1 ATTTTTGAAAACAC-GAAG
* *
6864765 ATTTTTGAAAACATGAAA
1 ATTTTTGAAAACACGAAG
6864783 ATTTTTG-AAACACCG--G
1 ATTTTTGAAAACA-CGAAG
* *
6864799 AATTTTGAAAACACGAGG
1 ATTTTTGAAAACACGAAG
*
6864817 ATTCTTGAAAACACGAAG
1 ATTTTTGAAAACACGAAG
*
6864835 ATTTTTTAAAACACGGAA-
1 ATTTTTGAAAACAC-GAAG
6864853 ATTTTTGAAA
1 ATTTTTGAAA
6864863 TTACGGAAAT
Statistics
Matches: 170, Mismatches: 34, Indels: 34
0.71 0.14 0.14
Matches are distributed among these distances:
16 19 0.11
17 50 0.29
18 83 0.49
19 14 0.08
20 4 0.02
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (18 bp):
ATTTTTGAAAACACGAAG
Found at i:6864777 original size:35 final size:35
Alignment explanation
Indices: 6864623--6864874 Score: 181
Period size: 35 Copynumber: 7.1 Consensus size: 35
6864613 AAAATAAGAG
* * * ***
6864623 AATTTTTAAAAACACGAAGATTTTTGAAACATTTA
1 AATTTTTGAAAACACGAAAATTTTTAAAACACGGA
**
6864658 TTTTTTTGAAAACACGAAAAATTTTTAAAACAC-GA
1 AATTTTTGAAAACACG-AAAATTTTTAAAACACGGA
* * * * * **
6864693 GAATTTTAG-AGACATGAAAATTCTTAAAAATACACA
1 -AATTTTTGAAAACACGAAAATT-TTTAAAACACGGA
*
6864729 ATTTTTTGAAAACACGAAAATTTTTAAAACACGGA
1 AATTTTTGAAAACACGAAAATTTTTAAAACACGGA
* *
6864764 AATTTTTGAAAACATGAAAATTTTTGAAACACCGG-
1 AATTTTTGAAAACACGAAAATTTTTAAAACA-CGGA
** *
6864799 AA-TTTTGAAAACACGAGGATTCTTGAAAACAC-GA
1 AATTTTTGAAAACACGAAAATT-TTTAAAACACGGA
* * **
6864833 AGATTTTTTAAAACACGGAAATTTTTGAAATTACGGA
1 A-ATTTTTGAAAACACGAAAATTTTT-AAAACACGGA
6864870 AATTT
1 AATTT
6864875 GAAATACGGA
Statistics
Matches: 167, Mismatches: 38, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
33 1 0.01
34 24 0.14
35 82 0.49
36 57 0.34
37 3 0.02
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (35 bp):
AATTTTTGAAAACACGAAAATTTTTAAAACACGGA
Found at i:6864810 original size:52 final size:53
Alignment explanation
Indices: 6864660--6864874 Score: 174
Period size: 53 Copynumber: 4.1 Consensus size: 53
6864650 AACATTTATT
* * *
6864660 TTTTTGAAAACACGAAAAATTTTT-AAAACAC-GAGAATTTT-AGAGACATGAAAA
1 TTTTTGAAAACACG-AAAATTTTTGAAAACACGGA-AATTTTGA-AAACACGGAAA
* * * * * *
6864713 TTCTTAAAAATAC-ACAATTTTTTGAAAACACGAAAATTTTTAAAACACGGAAA
1 TTTTTGAAAACACGA-AAATTTTTGAAAACACGGAAATTTTGAAAACACGGAAA
* *
6864766 TTTTTGAAAACATGAAAATTTTTG-AAACACCGG-AATTTTGAAAACAC-GAGGA
1 TTTTTGAAAACACGAAAATTTTTGAAAACA-CGGAAATTTTGAAAACACGGA-AA
* * * **
6864818 TTCTTGAAAACACGAAGATTTTTTAAAACACGGAAATTTTTGAAATTACGGAAA
1 TTTTTGAAAACACGAAAATTTTTGAAAACACGGAAA-TTTTGAAAACACGGAAA
6864872 TTT
1 TTT
6864875 GAAATACGGA
Statistics
Matches: 127, Mismatches: 24, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
51 3 0.02
52 49 0.39
53 57 0.45
54 16 0.13
55 2 0.02
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.31
Consensus pattern (53 bp):
TTTTTGAAAACACGAAAATTTTTGAAAACACGGAAATTTTGAAAACACGGAAA
Found at i:6864884 original size:15 final size:16
Alignment explanation
Indices: 6864856--6864888 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
6864846 CACGGAAATT
6864856 TTTGAAATTACGGAAA
1 TTTGAAATTACGGAAA
6864872 TTTGAAA-TACGGAAA
1 TTTGAAATTACGGAAA
6864887 TT
1 TT
6864889 ATTTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (16 bp):
TTTGAAATTACGGAAA
Found at i:6864892 original size:18 final size:19
Alignment explanation
Indices: 6864847--6864892 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 19
6864837 TTTTTAAAAC
6864847 ACGGAAATT-TTTGAAATT
1 ACGGAAATTATTTGAAATT
6864865 ACGG-AA--ATTTGAAA-T
1 ACGGAAATTATTTGAAATT
6864880 ACGGAAATTATTT
1 ACGGAAATTATTT
6864893 TTAAAAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
15 5 0.21
16 9 0.38
17 2 0.08
18 8 0.33
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (19 bp):
ACGGAAATTATTTGAAATT
Found at i:6864971 original size:18 final size:18
Alignment explanation
Indices: 6864950--6864988 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
6864940 ATTTTTTGAG
*
6864950 ACATGAGAAA-TTTTGGAA
1 ACATGA-AAACTTTTGAAA
6864968 ACATGAAAACTTTTGAAA
1 ACATGAAAACTTTTGAAA
6864986 ACA
1 ACA
6864989 CGATTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.26
Consensus pattern (18 bp):
ACATGAAAACTTTTGAAA
Found at i:6865644 original size:19 final size:20
Alignment explanation
Indices: 6865620--6865657 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
6865610 CCTGCTAGGC
*
6865620 CTGCTGCTGTTT-TTTTTTG
1 CTGCTGCTATTTCTTTTTTG
6865639 CTGCTGCTATTTCTTTTTT
1 CTGCTGCTATTTCTTTTTT
6865658 TTCTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.03, C:0.18, G:0.16, T:0.63
Consensus pattern (20 bp):
CTGCTGCTATTTCTTTTTTG
Found at i:6865779 original size:9 final size:9
Alignment explanation
Indices: 6865755--6865843 Score: 76
Period size: 9 Copynumber: 9.7 Consensus size: 9
6865745 CTGTGATGTA
6865755 TTTCTTTTT
1 TTTCTTTTT
6865764 CTTT-TATTTT
1 -TTTCT-TTTT
6865774 TTT-TATTTT
1 TTTCT-TTTT
*
6865783 TTTCTTCTT
1 TTTCTTTTT
*
6865792 TTTCTTTCT
1 TTTCTTTTT
* *
6865801 CTT-TTTTC
1 TTTCTTTTT
6865809 TTTCTTTTT
1 TTTCTTTTT
6865818 TTTCTTTTT
1 TTTCTTTTT
6865827 TTTCTTTCTT
1 TTTCTTT-TT
6865837 TCTTCTT
1 T-TTCTT
6865844 CTTCCTTCCC
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
8 5 0.08
9 45 0.68
10 11 0.17
11 5 0.08
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:6865806 original size:13 final size:13
Alignment explanation
Indices: 6865755--6865840 Score: 86
Period size: 13 Copynumber: 6.5 Consensus size: 13
6865745 CTGTGATGTA
6865755 TTTCTTTTTCTTT-
1 TTTCTTTTT-TTTC
* *
6865768 TATTTTTTTTATTTT
1 T-TTCTTTTT-TTTC
*
6865783 TTTCTTCTTTTTC
1 TTTCTTTTTTTTC
*
6865796 TTTCTCTTTTTTC
1 TTTCTTTTTTTTC
6865809 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
6865822 TTT-TTTTTCTTTC
1 TTTCTTTTT-TTTC
6865835 TTTCTT
1 TTTCTT
6865841 CTTCTTCCTT
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
12 5 0.08
13 37 0.61
14 18 0.30
15 1 0.02
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:6865834 original size:22 final size:22
Alignment explanation
Indices: 6865759--6865846 Score: 101
Period size: 22 Copynumber: 4.0 Consensus size: 22
6865749 GATGTATTTC
6865759 TTTTTCTTT-TATTTTTTT-TATT
1 TTTTTCTTTCT-TTTTTTTCT-TT
*
6865781 TTTTTC-TTCTTTTTCTTTCTCT
1 TTTTTCTTTCTTTTT-TTTCTTT
6865803 TTTTTCTTTCTTTTTTTTCTTT
1 TTTTTCTTTCTTTTTTTTCTTT
*
6865825 TTTTTCTTTCTTTCTTCTTCTT
1 TTTTTCTTTCTTT-TTTTTCTT
6865847 CCTTCCCTTC
Statistics
Matches: 58, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
21 6 0.10
22 36 0.62
23 16 0.28
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (22 bp):
TTTTTCTTTCTTTTTTTTCTTT
Found at i:6871707 original size:59 final size:60
Alignment explanation
Indices: 6871589--6871722 Score: 148
Period size: 59 Copynumber: 2.2 Consensus size: 60
6871579 AAATATGGGC
* * * *
6871589 CAAAATGTAATTTCTTGAGAGTTTAGGGGTCAAAGTGAAATTTTGAGAAAATCTAAGGGT
1 CAAAATGTAATTTCTAGAAAGTTTAGAGGTCAAAATGAAATTTTGAGAAAATCTAAGGGT
* * *
6871649 CGAAATGTAATTT-TAGAAAGTTTTGAGGTCAAAATGTAAATTTT-AGAAAAGT-TTAGGGT
1 CAAAATGTAATTTCTAGAAAGTTTAGAGGTCAAAATG-AAATTTTGAGAAAA-TCTAAGGGT
*
6871708 CAAAATATGAATTTC
1 CAAAATGT-AATTTC
6871723 AAAAAGTAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
59 36 0.59
60 25 0.41
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.34
Consensus pattern (60 bp):
CAAAATGTAATTTCTAGAAAGTTTAGAGGTCAAAATGAAATTTTGAGAAAATCTAAGGGT
Found at i:6871721 original size:30 final size:29
Alignment explanation
Indices: 6871559--6871713 Score: 120
Period size: 30 Copynumber: 5.2 Consensus size: 29
6871549 GCTTCTGGGG
* * *
6871559 CAAAAGTGTAATTTTAGCAAAAATAT-GGGC
1 CAAAA-TGTAATTTTAG-AAAAGTTTAGGGT
* *
6871589 CAAAATGTAATTTCTTG-AGAGTTTAGGGGT
1 CAAAATGTAATTT-TAGAAAAGTTTA-GGGT
* * *
6871619 CAAAGTGAAATTTTGAGAAAA-TCTAAGGGT
1 CAAAATGTAATTTT-AGAAAAGT-TTAGGGT
* *
6871649 CGAAATGTAATTTTAG-AAAGTTTTGAGGT
1 CAAAATGTAATTTTAGAAAAGTTTAG-GGT
6871678 CAAAATGTAAATTTTAGAAAAGTTTAGGGT
1 CAAAATGT-AATTTTAGAAAAGTTTAGGGT
6871708 CAAAAT
1 CAAAAT
6871714 ATGAATTTCA
Statistics
Matches: 98, Mismatches: 17, Indels: 20
0.73 0.13 0.15
Matches are distributed among these distances:
28 9 0.09
29 22 0.22
30 55 0.56
31 12 0.12
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.32
Consensus pattern (29 bp):
CAAAATGTAATTTTAGAAAAGTTTAGGGT
Found at i:6874316 original size:16 final size:16
Alignment explanation
Indices: 6874295--6874325 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6874285 ATTAGTTATA
*
6874295 TTAAAATTATTTAATT
1 TTAAAAATATTTAATT
6874311 TTAAAAATATTTAAT
1 TTAAAAATATTTAAT
6874326 ATTAGAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTAAAAATATTTAATT
Found at i:6879067 original size:38 final size:38
Alignment explanation
Indices: 6879025--6879160 Score: 195
Period size: 38 Copynumber: 3.6 Consensus size: 38
6879015 CTAGCATTTT
*
6879025 TTGTAGATTCTCGGGTAATATAATGAGATCTAGCCTTG
1 TTGTAGATTCTCAGGTAATATAATGAGATCTAGCCTTG
6879063 TTGTAGATTCTC-GAGTAATATAATGAGATCTAGCCTTG
1 TTGTAGATTCTCAG-GTAATATAATGAGATCTAGCCTTG
* *
6879101 TTGTAGATTCTTAGGTACTATAATGAG-TCTAGCTCTTG
1 TTGTAGATTCTCAGGTAATATAATGAGATCTAGC-CTTG
* *
6879139 TCGTGGATTCTCAGGTAATATA
1 TTGTAGATTCTCAGGTAATATA
6879161 TAACATAGGT
Statistics
Matches: 89, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
37 7 0.08
38 81 0.91
39 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.22, T:0.38
Consensus pattern (38 bp):
TTGTAGATTCTCAGGTAATATAATGAGATCTAGCCTTG
Found at i:6883959 original size:10 final size:10
Alignment explanation
Indices: 6883944--6884013 Score: 65
Period size: 10 Copynumber: 7.2 Consensus size: 10
6883934 ATTTAAGTAT
6883944 AATTTATAAA
1 AATTTATAAA
*
6883954 AATTTAAAAA
1 AATTTATAAA
*
6883964 AATTAATAAA
1 AATTTATAAA
6883974 AATATT-TAAA
1 AAT-TTATAAA
*
6883984 AATTTA-ACA
1 AATTTATAAA
*
6883993 AATTTCT-AA
1 AATTTATAAA
*
6884002 AATTTCTAAA
1 AATTTATAAA
6884012 AA
1 AA
6884014 AAAATACTCA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 17 0.35
10 31 0.63
11 1 0.02
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (10 bp):
AATTTATAAA
Found at i:6889936 original size:11 final size:11
Alignment explanation
Indices: 6889920--6889980 Score: 50
Period size: 11 Copynumber: 5.3 Consensus size: 11
6889910 AACACCATTT
6889920 TATTATTAAAA
1 TATTATTAAAA
*
6889931 TATTATCAAAA
1 TATTATTAAAA
* **
6889942 TATCTAATTTATT
1 TAT-T-ATTAAAA
*
6889955 TATTATTAATA
1 TATTATTAAAA
6889966 TATTATTTAAAA
1 TATTA-TTAAAA
6889978 TAT
1 TAT
6889981 CACCAACATC
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
11 23 0.59
12 10 0.26
13 6 0.15
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (11 bp):
TATTATTAAAA
Found at i:6893835 original size:33 final size:33
Alignment explanation
Indices: 6893793--6893889 Score: 124
Period size: 33 Copynumber: 2.9 Consensus size: 33
6893783 GGACTTTATC
*
6893793 TGTGTTTACTATCCTAACAGATTGTCTTTGTTT
1 TGTGTTTACTATCCTAACAGATTATCTTTGTTT
* * * *
6893826 TGTGTTTACTGTTCGAGCAGATTATCTTTGTTT
1 TGTGTTTACTATCCTAACAGATTATCTTTGTTT
*
6893859 TGTGTTTACTATCCTAGA-AGACTATCTTTGT
1 TGTGTTTACTATCCTA-ACAGATTATCTTTGT
6893890 AGATGCCATA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.19, C:0.14, G:0.18, T:0.49
Consensus pattern (33 bp):
TGTGTTTACTATCCTAACAGATTATCTTTGTTT
Found at i:6895090 original size:30 final size:30
Alignment explanation
Indices: 6895054--6895110 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
6895044 ACCAAGGAAG
6895054 CCTTGAGAACTAGTAGAAAAACCTTGAGCC
1 CCTTGAGAACTAGTAGAAAAACCTTGAGCC
* * *
6895084 CCTTGAGCAGTAGTAGGAAAACCTTGA
1 CCTTGAGAACTAGTAGAAAAACCTTGA
6895111 AAACCTTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (30 bp):
CCTTGAGAACTAGTAGAAAAACCTTGAGCC
Found at i:6895118 original size:30 final size:30
Alignment explanation
Indices: 6895054--6895118 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 30
6895044 ACCAAGGAAG
***
6895054 CCTTGAGAACTAGTAGAAAAACCTTGAGCC
1 CCTTGAGAACTAGTAGAAAAACCTTGAAAA
* * *
6895084 CCTTGAGCAGTAGTAGGAAAACCTTGAAAA
1 CCTTGAGAACTAGTAGAAAAACCTTGAAAA
6895114 CCTTG
1 CCTTG
6895119 TGGAGAAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (30 bp):
CCTTGAGAACTAGTAGAAAAACCTTGAAAA
Found at i:6902532 original size:41 final size:39
Alignment explanation
Indices: 6902416--6902548 Score: 123
Period size: 37 Copynumber: 3.4 Consensus size: 39
6902406 AGTTTGGCAC
* *
6902416 CCAGTGCCTCATC-AGATAATTCGAAGTAATAATTTGACA
1 CCAGTGTCTCATCGA-ATAATCCGAAGTAATAATTTGACA
** * *
6902455 CACAGTGTCTCATCGGCTAAACCG-A--AATAAATTGACA
1 C-CAGTGTCTCATCGAATAATCCGAAGTAATAATTTGACA
6902492 TCCAGTG-CTTCATCGAATATATCCGAAGTAATAATTTGACA
1 -CCAGTGTC-TCATCGAATA-ATCCGAAGTAATAATTTGACA
6902533 CCCAGTGTCTCATCGA
1 -CCAGTGTCTCATCGA
6902549 CTCAAAGTCG
Statistics
Matches: 74, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
36 1 0.01
37 24 0.32
38 5 0.07
39 3 0.04
40 16 0.22
41 24 0.32
42 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (39 bp):
CCAGTGTCTCATCGAATAATCCGAAGTAATAATTTGACA
Found at i:6904420 original size:44 final size:43
Alignment explanation
Indices: 6904325--6904780 Score: 544
Period size: 44 Copynumber: 10.7 Consensus size: 43
6904315 TCGCATCAAG
* * *
6904325 TCTTATCTCCCTAAGCAGTAGCGGAGCGGAC-AA-AACCACAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAGAAAC-CAGA
* *
6904367 TCTTATCTCCCTGAGCAATAGTGGAGCAGACGAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAGAAACCAGA
6904411 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAGAAACCAGA
* * *
6904455 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC--A-CATCAAG-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAGAAACCAGA
* * *
6904495 TCTTATCTACCTAAACAGTAGTGGAGCAGACGAATGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAGAAACCAGA
* * *
6904539 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC--A-CATCAAG-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAGAAACCAGA
*
6904579 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAAGAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAG-ACAAAGAAACCAGA
6904623 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAGAAACCAGA
* * * *
6904667 TCTTATCTCCCTAAGCAGTAGTAGAGCAGATC--A-CATCAAG-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAGAAACCAGA
6904707 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAGAAACCAGA
*
6904751 TCTTATCTTCCTAAGCAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
6904781 TCACATCAAG
Statistics
Matches: 355, Mismatches: 37, Indels: 42
0.82 0.09 0.10
Matches are distributed among these distances:
39 2 0.01
40 86 0.24
41 13 0.04
42 31 0.09
43 13 0.04
44 204 0.57
45 6 0.02
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (43 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAGAAACCAGA
Found at i:6904555 original size:128 final size:124
Alignment explanation
Indices: 6904313--6904780 Score: 616
Period size: 128 Copynumber: 3.7 Consensus size: 124
6904303 ATTAATAAAC
* * *
6904313 GATCGCATCAAGTCTTATCTCCCTAAGCAGTAGCGGAGCGGACAAAACCACAGATCTTATCTCCC
1 GATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAA-CA-AGATCTTATCTCCC
* *
6904378 TGAGCAATAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
64 TAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* * * * *
6904439 GA-CAAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAG-TCTTATC
1 GATC---A-CATCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAACAAGATCTTATC
* * *
6904502 TACCTAAACAGTAGTGGAGCAGACGAATGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
60 TCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* *
6904567 GATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAAGAAAGAAACCAGATCTTATCTC
1 GATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGC---AGACA-AAACAAGATCTTATCTC
*
6904632 CCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTAGAGCA
62 CCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
* *
6904695 GATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAGATCTTATCTT
1 GATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGAC---A-AAACAAGATCTTATCTC
6904760 CCTAAGCAGTAGTGGAGCAGA
62 CCTAAGCAGTAGTGGAGCAGA
6904781 TCACATCAAG
Statistics
Matches: 301, Mismatches: 26, Indels: 28
0.85 0.07 0.08
Matches are distributed among these distances:
124 27 0.09
125 8 0.03
126 4 0.01
127 7 0.02
128 215 0.71
129 7 0.02
130 30 0.10
131 3 0.01
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (124 bp):
GATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACAAGATCTTATCTCCCTA
AGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA
Found at i:6904696 original size:212 final size:212
Alignment explanation
Indices: 6904325--6904819 Score: 812
Period size: 212 Copynumber: 2.3 Consensus size: 212
6904315 TCGCATCAAG
* * * * * *
6904325 TCTTATCTCCCTAAGCAGTAGCGGAGCGGA-CAAAACCACAGATCTTATCTCCCTGAGCAATAGT
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-ACATCA-AG-TCTTATCTCCCTAAGCAGTAGT
*
6904389 GGAGCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAG
63 GGAGCAGAAGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAG
*
6904454 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTACCTAAACAGTAGTGG
128 ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTACCTAAACAGTAGTGG
* *
6904519 AGCAGACGAATGAAACCAGA
193 AGCAGACAAAAGAAACCAGA
6904539 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
*
6904604 GCAGAAGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATC
66 GCAGAAGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAGATC
* *
6904669 TTATCTCCCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGC
131 TTATCTCCCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTACCTAAACAGTAGTGGAGC
6904734 AGACAAAAGAAACCAGA
196 AGACAAAAGAAACCAGA
* * *
6904751 TCTTATCTTCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTACCTAAACAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
6904816 GCAG
66 GCAG
6904820 GTTGAAGATA
Statistics
Matches: 264, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
212 229 0.87
213 2 0.01
214 32 0.12
215 1 0.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (212 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
GCAGAAGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAGATC
TTATCTCCCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTACCTAAACAGTAGTGGAGC
AGACAAAAGAAACCAGA
Found at i:6904781 original size:84 final size:84
Alignment explanation
Indices: 6904325--6904819 Score: 519
Period size: 84 Copynumber: 5.8 Consensus size: 84
6904315 TCGCATCAAG
* * * * *
6904325 TCTTATCTCCCTAAGCAGTAGCGGAGCGGACAAAACCACAGATCTTATCTCCCTGAGCAATAGTG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAATCA-AGATCTTATCTCCCTAAGCAGTAGTG
6904390 GAGCAGACGAAAGAAACCAGA
65 GAGCAGAC-AAAGAAACCAGA
* *
6904411 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAGATCTTATCTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC--AA-AATCAAGATCTTATCTCCCTAAGCAGTAG
* * *
6904476 TGGAGCAGATC--A-CATCAAG-
63 TGGAGCAGA-CAAAGAAACCAGA
* * * *
6904495 TCTTATCTACCTAAACAGTAGTGGAGCAGACGAATGAAACCAGATCTTATCTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AA--AATCAAGATCTTATCTCCCTAAGCAGTAG
* * *
6904560 TGGAGCAGATC--A-CATCAAG-
63 TGGAGCAGA-CAAAGAAACCAGA
* * *
6904579 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAAGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAG-A-CAA-AATCAAGATCTTATCTCCCTAAGCAGTAG
6904644 TGGAGCAGACGAAAGAAACCAGA
63 TGGAGCAGAC-AAAGAAACCAGA
* *
6904667 TCTTATCTCCCTAAGCAGTAGTAGAGCAGATC-ACATCAAG-TCTTATCTCCCTAAGCAGTAGTG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAATCAAGATCTTATCTCCCTAAGCAGTAGTG
6904730 GAGCAGACAAAAGAAACCAGA
65 GAGCAGAC-AAAGAAACCAGA
* * * *
6904751 TCTTATCTTCCTAAGCAGTAGTGGAGCAGATC-ACATCAAG-TCTTATCTACCTAAACAGTAGTG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAATCAAGATCTTATCTCCCTAAGCAGTAGTG
6904814 GAGCAG
65 GAGCAG
6904820 GTTGAAGATA
Statistics
Matches: 368, Mismatches: 29, Indels: 26
0.87 0.07 0.06
Matches are distributed among these distances:
83 3 0.01
84 252 0.68
85 11 0.03
86 32 0.09
87 5 0.01
88 61 0.17
89 4 0.01
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (84 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAATCAAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGACAAAGAAACCAGA
Found at i:6905962 original size:12 final size:12
Alignment explanation
Indices: 6905945--6905971 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6905935 CCTTCTTCTC
6905945 CCCTTTCCCCTT
1 CCCTTTCCCCTT
6905957 CCCTTTCCCCTT
1 CCCTTTCCCCTT
6905969 CCC
1 CCC
6905972 CTTGGGTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (12 bp):
CCCTTTCCCCTT
Found at i:6906093 original size:25 final size:27
Alignment explanation
Indices: 6906033--6906093 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
6906023 CCAGGTAAGG
*
6906033 CTTCTTCTCCTTCATCCGTTCTTCATTC
1 CTTC-TCTTCTTCATCCGTTCTTCATTC
*
6906061 CTT-T-TTCTTCTTCCGTTCTTCA-T-
1 CTTCTCTTCTTCATCCGTTCTTCATTC
6906084 CTTCTCTTCT
1 CTTCTCTTCT
6906094 CAGCATATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 3 0.10
24 2 0.07
25 20 0.69
26 1 0.03
28 3 0.10
ACGTcount: A:0.05, C:0.36, G:0.03, T:0.56
Consensus pattern (27 bp):
CTTCTCTTCTTCATCCGTTCTTCATTC
Found at i:6906257 original size:12 final size:13
Alignment explanation
Indices: 6906232--6906264 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
6906222 CGTTCTCACT
*
6906232 AAAATTGGTAAAA
1 AAAATCGGTAAAA
6906245 AAAATCGGT-AAA
1 AAAATCGGTAAAA
6906257 AAAATCGG
1 AAAATCGG
6906265 CGGTTCCAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (13 bp):
AAAATCGGTAAAA
Found at i:6906609 original size:12 final size:13
Alignment explanation
Indices: 6906586--6906611 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6906576 TCAATGAACC
6906586 CTTAATTTTTTTG
1 CTTAATTTTTTTG
6906599 CTTAATTTTTTTG
1 CTTAATTTTTTTG
6906612 GTACTCAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (13 bp):
CTTAATTTTTTTG
Found at i:6910017 original size:21 final size:21
Alignment explanation
Indices: 6909991--6910043 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
6909981 CGCTGTTTCT
*
6909991 AATCTCACCGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
6910012 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
6910033 AATCTCACCGC
1 AATCTCACCGC
6910044 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:6910328 original size:16 final size:16
Alignment explanation
Indices: 6910294--6910329 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
6910284 AAATATCCTT
* *
6910294 TAAAATTTCAAACACA
1 TAAAATTTCAAAAAAA
6910310 TAAAATTTCAAAAAAA
1 TAAAATTTCAAAAAAA
6910326 TAAA
1 TAAA
6910330 GGCAATGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.25
Consensus pattern (16 bp):
TAAAATTTCAAAAAAA
Found at i:6912340 original size:99 final size:99
Alignment explanation
Indices: 6912169--6912366 Score: 387
Period size: 99 Copynumber: 2.0 Consensus size: 99
6912159 CTTTGAGGAA
6912169 GAAACAAAAAAAAACCTATCAAGAATTTGTTTCTACATCCCTAGAGGCGTTTGAACAACTGGACT
1 GAAACAAAAAAAAACCTATCAAGAATTTGTTTCTACATCCCTAGAGGCGTTTGAACAACTGGACT
6912234 GTGGAGGAGACTCTTGTAATTTTTAGGACCATTT
66 GTGGAGGAGACTCTTGTAATTTTTAGGACCATTT
*
6912268 GAAACTAAAAAAAACCTATCAAGAATTTGTTTCTACATCCCTAGAGGCGTTTGAACAACTGGACT
1 GAAACAAAAAAAAACCTATCAAGAATTTGTTTCTACATCCCTAGAGGCGTTTGAACAACTGGACT
6912333 GTGGAGGAGACTCTTGTAATTTTTAGGACCATTT
66 GTGGAGGAGACTCTTGTAATTTTTAGGACCATTT
6912367 CAGAGTAATA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
99 98 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (99 bp):
GAAACAAAAAAAAACCTATCAAGAATTTGTTTCTACATCCCTAGAGGCGTTTGAACAACTGGACT
GTGGAGGAGACTCTTGTAATTTTTAGGACCATTT
Found at i:6913470 original size:22 final size:22
Alignment explanation
Indices: 6913445--6913495 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
6913435 GTGGAGGCAA
*
6913445 AAAAAACACAAAAATAA-AAAAT
1 AAAAAACACAAAAA-AACAAAAC
* *
6913467 AAAAGAGACAAAAAAACAAAAC
1 AAAAAACACAAAAAAACAAAAC
6913489 AAAAAAC
1 AAAAAAC
6913496 CTCTACCGGG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.80, C:0.12, G:0.04, T:0.04
Consensus pattern (22 bp):
AAAAAACACAAAAAAACAAAAC
Found at i:6915033 original size:42 final size:42
Alignment explanation
Indices: 6914986--6915119 Score: 132
Period size: 41 Copynumber: 3.1 Consensus size: 42
6914976 ATAACAGATA
6914986 TTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACC
1 TTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACC
* * * * *
6915028 TTGCC-TCTCT-CATTCG-TAGC-AGAGCTGGTCGAAGATAGTAGATC
1 TTGCCTTC-CTGCATT-GACAGCGA-AGCAGATCGAAGACA--A-ACC
*
6915072 TTGCCTTCCTGCATAGACAGCGAAGCAGATCGAAGACAAACC
1 TTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACC
6915114 TTGCCT
1 TTGCCT
6915120 CTCTCATTTG
Statistics
Matches: 71, Mismatches: 11, Indels: 20
0.70 0.11 0.20
Matches are distributed among these distances:
40 1 0.01
41 21 0.30
42 16 0.23
43 2 0.03
44 10 0.14
45 20 0.28
46 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (42 bp):
TTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAACC
Found at i:6915061 original size:41 final size:41
Alignment explanation
Indices: 6915015--6915142 Score: 109
Period size: 41 Copynumber: 3.0 Consensus size: 41
6915005 GCGAAGCAGA
6915015 TCGAAGACAAACCTTGCCTCTCTCATTCGTAGCAGAGCTGG
1 TCGAAGACAAACCTTGCCTCTCTCATTCGTAGCAGAGCTGG
* * * * * *
6915056 TCGAAGATAGTAGATCTTGCCT-TC-C-TGCATAGACAGCGAAGCAGA
1 TCGAAGACA--A-ACCTTGCCTCTCTCATTCGTAG-CA--G-AGCTGG
*
6915101 TCGAAGACAAACCTTGCCTCTCTCATTTGTAGCAGAGCTGG
1 TCGAAGACAAACCTTGCCTCTCTCATTCGTAGCAGAGCTGG
6915142 T
1 T
6915143 TAAAGATTAC
Statistics
Matches: 64, Mismatches: 13, Indels: 20
0.66 0.13 0.21
Matches are distributed among these distances:
41 18 0.28
42 12 0.19
43 6 0.09
44 12 0.19
45 16 0.25
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.25
Consensus pattern (41 bp):
TCGAAGACAAACCTTGCCTCTCTCATTCGTAGCAGAGCTGG
Found at i:6915085 original size:86 final size:85
Alignment explanation
Indices: 6914932--6915194 Score: 357
Period size: 86 Copynumber: 3.1 Consensus size: 85
6914922 AGTAAAAAAT
* * * ** *
6914932 GAAGA-AAGCCTTGCCTCCCTCGTTTGTAGTGGAGCTGGTCAAAGATAACAGATATTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCATTTGTAGCAGAGCTGGTCAAAGAT-ACAGATCTTGCCTTCCT
6914996 GCATTGACAGCGAAGCAGATC
65 GCATTGACAGCGAAGCAGATC
* * *
6915017 GAAGACAAACCTTGCCTCTCTCATTCGTAGCAGAGCTGGTCGAAGATAGTAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCTCTCTCATTTGTAGCAGAGCTGGTCAAAGATA-CAGATCTTGCCTTCCT
*
6915082 GCATAGACAGCGAAGCAGATC
65 GCATTGACAGCGAAGCAGATC
* *
6915103 GAAGACAAACCTTGCCTCTCTCATTTGTAGCAGAGCTGGTTAAAGATTACAGATCTTGCATTCCT
1 GAAGACAAACCTTGCCTCTCTCATTTGTAGCAGAGCTGGTCAAAGA-TACAGATCTTGCCTTCCT
* *
6915168 GTATTTGGCAGCGAAGCAGATC
65 GCA-TTGACAGCGAAGCAGATC
6915190 GAAGA
1 GAAGA
6915195 TGGCAGATTT
Statistics
Matches: 156, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
85 6 0.04
86 127 0.81
87 23 0.15
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (85 bp):
GAAGACAAACCTTGCCTCTCTCATTTGTAGCAGAGCTGGTCAAAGATACAGATCTTGCCTTCCTG
CATTGACAGCGAAGCAGATC
Found at i:6915270 original size:45 final size:45
Alignment explanation
Indices: 6915219--6915460 Score: 138
Period size: 45 Copynumber: 5.2 Consensus size: 45
6915209 TCCCTGACTA
6915219 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * * * *
6915264 CAGTGGAATAGATTGAAGATCAAAGATGACAAATTTTACCTCACTG-A-TT-A
1 CAGTGGAGTACATTGAAG--C--CGAT----AACTCTATCTCCCTGTATTTGG
*
6915314 CAGTGGAGTACATTGAAGCCAATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * *
6915359 CAGTGGAATAGATTGAAGATCAAAGATGACAGATTTTACCTCCCTG-ATTAT--
1 CAGTGGAGTACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGTATT-TGG
6915410 -AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
*
6915454 TAGTGGA
1 CAGTGGA
6915461 ACAGATTGAA
Statistics
Matches: 143, Mismatches: 30, Indels: 48
0.65 0.14 0.22
Matches are distributed among these distances:
42 23 0.16
43 5 0.03
44 2 0.01
45 38 0.27
46 5 0.03
47 2 0.01
48 2 0.01
49 5 0.03
50 31 0.22
51 2 0.01
52 5 0.03
53 23 0.16
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (45 bp):
CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
Found at i:6915321 original size:95 final size:95
Alignment explanation
Indices: 6915185--6915473 Score: 497
Period size: 95 Copynumber: 3.0 Consensus size: 95
6915175 GCAGCGAAGC
* * *
6915185 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGACAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
6915250 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
6915280 AGATCAAAGATGACAAATTTTACCTCACTGATTACAGTGGAGTACATTGAAGCCAATAACTCTAT
1 AGATCAAAGATGACAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
6915345 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
*
6915375 AGATCAAAGATGACAGATTTTACCTCCCTGATTATAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGACAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
6915440 CTCCCTGTATTTGGTAGTGGAACAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
6915470 AGAT
1 AGAT
6915474 TGCAGATCTT
Statistics
Matches: 182, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 182 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (95 bp):
AGATCAAAGATGACAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:6915512 original size:46 final size:46
Alignment explanation
Indices: 6915443--6915535 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 46
6915433 ACTCTATCTC
* * * * *
6915443 CCTGTATTTGGTAGTGGAACAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTCGAACAGATCGAAGATGGCAGATCTTACCTT
*
6915489 CCTGTATTTGGCAG-CGAAGCAGATCGAAGATGGCAGATTTTACCTT
1 CCTGTATTTGGCAGTCGAA-CAGATCGAAGATGGCAGATCTTACCTT
6915535 C
1 C
6915536 TTGGGATAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
45 3 0.08
46 37 0.93
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (46 bp):
CCTGTATTTGGCAGTCGAACAGATCGAAGATGGCAGATCTTACCTT
Found at i:6915601 original size:134 final size:131
Alignment explanation
Indices: 6915375--6915872 Score: 483
Period size: 134 Copynumber: 3.7 Consensus size: 131
6915365 AATAGATTGA
* * * * *
6915375 AGATCAAAGATGACAGATTTTACCTCCCT-GATTATAGTGGAGTACATTGAAGC-CGATAACTCT
1 AGATCGAAGATGGCAGATTTTACCTTCCTGGA-TACAGTGGAGTACATTGAAGCTAG-TAACTCT
* ** *
6915438 ATCTCCCT-GTATTTGGTAGTGGAACAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
64 ATCTCCCTGGCA----ACAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCA
6915502 GCGAAGC
125 GCGAAGC
*
6915509 AGATCGAAGATGGCAGATTTTACCTTCTTGGGATAACAGTGGAGTACATTGAAGCTAGTAACTCT
1 AGATCGAAGATGGCAGATTTTACCTTCCT-GGAT-ACAGTGGAGTACATTGAAGCTAGTAACTCT
* * **** * *
6915574 ATCTCCCTCGGCAACAGTGGAATAGATTGAAGATTACAGATCTT--CTCTCC-CTAAGCAGTAGT
64 ATCTCCCT-GGCAACAGTGGAATAGATTGAAGATTGCAGATCTTGCCT-TCCTGTATTTGGCAGC
*
6915636 GGAGC
127 GAAGC
*
6915641 AGATCGAAGATGGCAGATTTTACCTTCCTGTGACTACAGTGGAGTACATTGAAGC-CGATAACTC
1 AGATCGAAGATGGCAGATTTTACCTTCCTG-GA-TACAGTGGAGTACATTGAAGCTAG-TAACTC
*
6915705 TATCTCCCT-GTATTTGACAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGC
63 TATCTCCCTGGCA----ACAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGC
*
6915769 AGCGAAGT
124 AGCGAAGC
* * * * **
6915777 AGATCGAAGATGACGGATTTTACCTCCCT-GATTACAGTGGAGTACATTGAAGCTGGTAGTTCTA
1 AGATCGAAGATGGCAGATTTTACCTTCCTGGA-TACAGTGGAGTACATTGAAGCTAGTAACTCTA
** *
6915841 TCTCTTTGGGCAACAGTGGAATAGATCGAAGA
65 TCTCCCT-GGCAACAGTGGAATAGATTGAAGA
6915873 CCACAGATCT
Statistics
Matches: 301, Mismatches: 43, Indels: 42
0.78 0.11 0.11
Matches are distributed among these distances:
130 2 0.01
131 2 0.01
132 95 0.32
133 4 0.01
134 116 0.39
135 5 0.02
136 74 0.25
137 1 0.00
138 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (131 bp):
AGATCGAAGATGGCAGATTTTACCTTCCTGGATACAGTGGAGTACATTGAAGCTAGTAACTCTAT
CTCCCTGGCAACAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAG
C
Found at i:6915680 original size:132 final size:130
Alignment explanation
Indices: 6915506--6915912 Score: 410
Period size: 132 Copynumber: 3.1 Consensus size: 130
6915496 TTGGCAGCGA
* *
6915506 AGCAGATCGAAGATGGCAGATTTTACCTTCTTGGGATAACAGTGGAGTACATTGAAGCTAGTAAC
1 AGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGAT-ACAGTGGAGTACATTGAAGCTAGTAAC
6915571 TCTATCTCCCTCGGCAACAGTGGAATAGATTGAAGATTACAGATCTTCTCTCCCTAAGCAGTAGT
65 TCTATCTCCCT-GGCAACAGTGGAATAGATTGAAGATTACAGATCTTCTCTCCCTAAGCAGTAGT
6915636 GG
129 GG
*
6915638 AGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGACTACAGTGGAGTACATTGAAGC-CGATAA
1 AGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGA-TACAGTGGAGTACATTGAAGCTAG-TAA
* * * **
6915702 CTCTATCTCCCT-GTATTTGACAGTGGAATAGATTGAAGATTGCAGATCTTGC-CTTCCTGTATT
64 CTCTATCTCCCTGGCA----ACAGTGGAATAGATTGAAGATTACAGATCTT-CTC-TCC-CTAAG
** * * *
6915765 TGGCAGCGA
122 CAGTAGTGG
* * * * * **
6915774 AGTAGATCGAAGATGACGGATTTTACC-TCC-CTGATTACAGTGGAGTACATTGAAGCTGGTAGT
1 AGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGA-TACAGTGGAGTACATTGAAGCTAGTAAC
** * ** * *
6915837 TCTATCTCTTTGGGCAACAGTGGAATAGATCGAAGACCACAGATCTTATCTCCCTAAGCAATAGT
65 TCTATCTCCCT-GGCAACAGTGGAATAGATTGAAGATTACAGATCTTCTCTCCCTAAGCAGTAGT
6915902 GG
129 GG
*
6915904 AGTAGATCG
1 AGCAGATCG
6915913 CATCAAGTCT
Statistics
Matches: 224, Mismatches: 38, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
130 16 0.07
131 4 0.02
132 97 0.43
133 1 0.00
134 66 0.29
135 8 0.04
136 32 0.14
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (130 bp):
AGCAGATCGAAGATGGCAGATTTTACCTTCCTGTGATACAGTGGAGTACATTGAAGCTAGTAACT
CTATCTCCCTGGCAACAGTGGAATAGATTGAAGATTACAGATCTTCTCTCCCTAAGCAGTAGTGG
Found at i:6915904 original size:266 final size:265
Alignment explanation
Indices: 6915375--6915912 Score: 808
Period size: 268 Copynumber: 2.0 Consensus size: 265
6915365 AATAGATTGA
* * *
6915375 AGATCAAAGATGACAGATTTTACCTCCCTGATTATAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGACAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
**
6915440 CTCCCTGTATTTGGTAGTGGAACAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGACAGTGGAACAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* * *
6915505 AAGCAGATCGAAGATGGCAGATTTTACCTTCTTGGGATAACAGTGGAGTACATTGAAGCTAGTAA
131 AAGCAGATCGAAGATGACAGATTTTACCTCCCT-GGATAACAGTGGAGTACATTGAAGCTAGTAA
* ** * *
6915570 CTCTATCTCCCTCGGCAACAGTGGAATAGATTGAAGATTACAGATCTTCTCTCCCTAAGCAGTAG
195 CTCTATCTCCCTCGGCAACAGTGGAATAGATCGAAGACCACAGATCTTATCTCCCTAAGCAATAG
6915635 TGGAGC
260 TGGAGC
* *
6915641 AGATCGAAGATGGCAGATTTTACCTTCCTGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCGAAGATGACAGATTTTACC-TCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
6915706 ATCTCCCTGTATTTGACAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCTGTATTTGACAGTGGAACAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
* * * *
6915771 CGAAGTAGATCGAAGATGACGGATTTTACCTCCCT-GATTACAGTGGAGTACATTGAAGCTGGTA
129 CGAAGCAGATCGAAGATGACAGATTTTACCTCCCTGGATAACAGTGGAGTACATTGAAGCTAGTA
** ** *
6915835 GTTCTATCTCTTTGGGCAACAGTGGAATAGATCGAAGACCACAGATCTTATCTCCCTAAGCAATA
194 ACTCTATCTCCCTCGGCAACAGTGGAATAGATCGAAGACCACAGATCTTATCTCCCTAAGCAATA
*
6915900 GTGGAGT
259 GTGGAGC
6915907 AGATCG
1 AGATCG
6915913 CATCAAGTCT
Statistics
Matches: 244, Mismatches: 26, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
266 116 0.48
267 3 0.01
268 125 0.51
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (265 bp):
AGATCGAAGATGACAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGACAGTGGAACAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCGAAGATGACAGATTTTACCTCCCTGGATAACAGTGGAGTACATTGAAGCTAGTAAC
TCTATCTCCCTCGGCAACAGTGGAATAGATCGAAGACCACAGATCTTATCTCCCTAAGCAATAGT
GGAGC
Found at i:6915965 original size:82 final size:82
Alignment explanation
Indices: 6915872--6916779 Score: 1275
Period size: 82 Copynumber: 11.0 Consensus size: 82
6915862 TAGATCGAAG
* *
6915872 ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCA
1 ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCA
* *
6915937 GTAGCGGAGCGGACAAA
66 GTAGTGGAGCAGACAAA
* * *
6915954 ACCACAAATCTTATCTCCCTGAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCA
1 ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCA
* **
6916019 GTAGCGGAGTGGACAAA
66 GTAGTGGAGCAGACAAA
* *
6916036 ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATTAAGTCTTATCTCCCTAAGCA
1 ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCA
* *
6916101 GTAGCGGAGCGGACAAA
66 GTAGTGGAGCAGACAAA
* * *
6916118 ACCACAGATCTTATCTCCCTAAGTAATAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCA
1 ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCA
*
6916183 GCAGTGGAGCAGACAAA
66 GTAGTGGAGCAGACAAA
* * *
6916200 ACCACAGATCTTATCTCCCTAAGTAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCTTAAGCA
1 ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCA
* * *
6916265 GTAGCGGAGCGGACGAA
66 GTAGTGGAGCAGACAAA
*
6916282 ACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCA
1 ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCA
6916347 GTAGTGGAGCAGACGAAA
66 GTAGTGGAGCAGAC-AAA
* * *
6916365 GA-AACCAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAG
1 -ACCA-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAG
*
6916429 TAGTAGTGGAGCAGACAAA
64 CAGTAGTGGAGCAGACAAA
** * * *
6916448 AGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTACCTAAA
1 A-CCA-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAG
6916513 CAGTAGTGGAGCAGACGAAA
64 CAGTAGTGGAGCAGAC-AAA
*
6916533 GA-AACCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAG
1 -ACCA-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAG
6916597 CAGTAGTGGAGCAGACGAAA
64 CAGTAGTGGAGCAGAC-AAA
* * * * *
6916617 GA-AACCAGATCTTATTTCCCTAAGTAGTAGTGGAGCAGATCATATCAAGTCTTATCTCCCTAAG
1 -ACCA-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAG
6916681 CAGTAGTGGAGCAGACGAAA
64 CAGTAGTGGAGCAGAC-AAA
* * *
6916701 GA-AACCAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAG
1 -ACCA-CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAG
6916765 CAGTAGTGGAGCAGA
64 CAGTAGTGGAGCAGA
6916780 TCACATCAAG
Statistics
Matches: 774, Mismatches: 45, Indels: 12
0.93 0.05 0.01
Matches are distributed among these distances:
82 382 0.49
83 6 0.01
84 382 0.49
85 3 0.00
86 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (82 bp):
ACCACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCA
GTAGTGGAGCAGACAAA
Found at i:6916409 original size:84 final size:83
Alignment explanation
Indices: 6915876--6916779 Score: 1277
Period size: 84 Copynumber: 10.9 Consensus size: 83
6915866 TCGAAGACCA
* *
6915876 CAGATCTTATCTCCCTAAGCAATAGTGGAGTAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
* * *
6915941 CGGAGCGGAC--AAAACC
66 TGGAGCAGACGAAAAAAC
* * *
6915957 ACAAATCTTATCTCCCTGAGCAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTA
1 -CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTA
* ** *
6916022 GCGGAGTGGAC--AAAACC
65 GTGGAGCAGACGAAAAAAC
* *
6916039 ACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGCATTAAGTCTTATCTCCCTAAGCAGTA
1 -CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTA
* * *
6916104 GCGGAGCGGAC--AAAACC
65 GTGGAGCAGACGAAAAAAC
* * * *
6916121 ACAGATCTTATCTCCCTAAGTAATAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGCA
1 -CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTA
*
6916186 GTGGAGCAGAC--AAAACC
65 GTGGAGCAGACGAAAAAAC
* * *
6916203 ACAGATCTTATCTCCCTAAGTAATAGTGGAGCAGATCGCATCAAGTCTTATCTCCTTAAGCAGTA
1 -CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTA
* * **
6916268 GCGGAGCGGACGAAACCA-
65 GTGGAGCAGACGAAAAAAC
*
6916286 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
6916351 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAA-AAAC
* * *
6916370 CAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGTAGTAG
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
*
6916435 TGGAGCAGACAAAAGAAAC
66 TGGAGCAGACGAAA-AAAC
* * *
6916454 CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTACCTAAACAGTAG
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
6916519 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAA-AAAC
6916538 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
6916603 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAA-AAAC
* * * *
6916622 CAGATCTTATTTCCCTAAGTAGTAGTGGAGCAGATCATATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
6916687 TGGAGCAGACGAAAGAAAC
66 TGGAGCAGACGAAA-AAAC
* *
6916706 CAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
1 CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
6916771 TGGAGCAGA
66 TGGAGCAGA
6916780 TCACATCAAG
Statistics
Matches: 769, Mismatches: 49, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
82 375 0.49
83 1 0.00
84 393 0.51
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (83 bp):
CAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAG
TGGAGCAGACGAAAAAAC
Found at i:6919917 original size:46 final size:46
Alignment explanation
Indices: 6919850--6919961 Score: 197
Period size: 46 Copynumber: 2.4 Consensus size: 46
6919840 CAAAACCATC
*
6919850 AAGTTAAAAGGTAAAACTATGTCATTTTGATCAATGTTTACCTATT
1 AAGTTAAAAGGCAAAACTATGTCATTTTGATCAATGTTTACCTATT
* *
6919896 AAGTTAAAAGGCAAAATTATGTCGTTTTGATCAATGTTTACCTATT
1 AAGTTAAAAGGCAAAACTATGTCATTTTGATCAATGTTTACCTATT
6919942 AAGTTAAAAGGCAAAACTAT
1 AAGTTAAAAGGCAAAACTAT
6919962 TATATCGTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 62 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (46 bp):
AAGTTAAAAGGCAAAACTATGTCATTTTGATCAATGTTTACCTATT
Found at i:6922100 original size:12 final size:12
Alignment explanation
Indices: 6922085--6922109 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6922075 CACATATATA
6922085 TACGACATTGAT
1 TACGACATTGAT
6922097 TACGACATTGAT
1 TACGACATTGAT
6922109 T
1 T
6922110 TCTTGTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (12 bp):
TACGACATTGAT
Found at i:6929105 original size:22 final size:23
Alignment explanation
Indices: 6929080--6929130 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
6929070 TTTCCTATAT
6929080 AAACTAGTT-TTCCAT-TCTTTTC
1 AAACTAGTTATTCCATCT-TTTTC
* *
6929102 AAACTATTTATTGCATCTTTTTC
1 AAACTAGTTATTCCATCTTTTTC
6929125 AAACTA
1 AAACTA
6929131 CGTGGTCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 8 0.32
23 16 0.64
24 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (23 bp):
AAACTAGTTATTCCATCTTTTTC
Found at i:6937683 original size:43 final size:43
Alignment explanation
Indices: 6937591--6937674 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
6937581 ATTGTGGATA
* *
6937591 AATTCAAATATTTGTTAATAATAAATATCATTATTAAATATTT
1 AATTTAAATATTTGTTAATAATAAATATAATTATTAAATATTT
*
6937634 AATTTAAATATTT-TTAATAATAAA-A-AATTATATGAATATTT
1 AATTTAAATATTTGTTAATAATAAATATAATTAT-TAAATATTT
6937675 TTTATTTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 5 0.14
41 9 0.24
42 11 0.30
43 12 0.32
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (43 bp):
AATTTAAATATTTGTTAATAATAAATATAATTATTAAATATTT
Found at i:6948491 original size:19 final size:19
Alignment explanation
Indices: 6948467--6948513 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
6948457 ACGTCTCTTT
*
6948467 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
6948486 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
6948505 TATGCATTA
1 TTTGCATTA
6948514 GATTTTTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:6949784 original size:29 final size:30
Alignment explanation
Indices: 6949732--6949793 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
6949722 AAAAAGAGGG
*
6949732 AAAAGAAAAAAAAATCAAATTCAAAAG-CAA
1 AAAAAAAAAAAAAATCAAATTC-AAAGTCAA
6949762 AAAAAAAAAGAAAAATC-AA-TCAAAGTCAA
1 AAAAAAAAA-AAAAATCAAATTCAAAGTCAA
6949791 AAA
1 AAA
6949794 TAAGAGAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
28 4 0.14
29 8 0.28
30 10 0.34
31 7 0.24
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (30 bp):
AAAAAAAAAAAAAATCAAATTCAAAGTCAA
Found at i:6949804 original size:35 final size:34
Alignment explanation
Indices: 6949732--6949815 Score: 87
Period size: 35 Copynumber: 2.4 Consensus size: 34
6949722 AAAAAGAGGG
* *
6949732 AAAAGAAAAAAAAATCAAATTCAAAAGCAAAAAAA
1 AAAAGAAAAAAAAATCAAAGTCAAAAAC-AAAAAA
** * * *
6949767 AAAAGAAAAATCAATCAAAGTCAAAAATAAGAGA
1 AAAAGAAAAAAAAATCAAAGTCAAAAACAAAAAA
6949801 AAAAGAAAAGAAAAA
1 AAAAGAAAA-AAAAA
6949816 GGAGAGGTCA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
34 13 0.33
35 26 0.67
ACGTcount: A:0.75, C:0.07, G:0.10, T:0.08
Consensus pattern (34 bp):
AAAAGAAAAAAAAATCAAAGTCAAAAACAAAAAA
Found at i:6950623 original size:7 final size:7
Alignment explanation
Indices: 6950606--6950655 Score: 66
Period size: 7 Copynumber: 7.1 Consensus size: 7
6950596 CTTTGGGTCA
6950606 AAAAAAT
1 AAAAAAT
6950613 -AAAAAT
1 AAAAAAT
*
6950619 AAAAACAA
1 AAAAA-AT
6950627 AAAAAAT
1 AAAAAAT
*
6950634 GAAAAAT
1 AAAAAAT
6950641 AAAAAAT
1 AAAAAAT
6950648 AAAAAAT
1 AAAAAAT
6950655 A
1 A
6950656 GAGAGGCTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
6 6 0.16
7 25 0.68
8 6 0.16
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:6950638 original size:22 final size:20
Alignment explanation
Indices: 6950605--6950655 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 20
6950595 ACTTTGGGTC
6950605 AAAAAAATAAAAATAAAAACA
1 AAAAAAATAAAAATAAAAA-A
6950626 AAAAAAATGAAAAATAAAAAA
1 AAAAAAAT-AAAAATAAAAAA
*
6950647 TAAAAAATA
1 AAAAAAATA
6950656 GAGAGGCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 1 0.04
21 16 0.57
22 11 0.39
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (20 bp):
AAAAAAATAAAAATAAAAAA
Found at i:6952065 original size:49 final size:49
Alignment explanation
Indices: 6952007--6952451 Score: 145
Period size: 49 Copynumber: 9.1 Consensus size: 49
6951997 ACAATGACGG
6952007 ATCTCACTTTCCTGACA-TGATAATCAAAAGATTGAGGCCACAACGGCAA
1 ATCTCACTTTCCTGACAGTG-TAATCAAAAGATTGAGGCCACAACGGCAA
* * * * * * * *
6952056 ATCTTACTTT--TAAGCGGTG-CAGCGAAACAGATTGAAGCTACAACGGCAG
1 ATCTCACTTTCCTGA-CAGTGTAATC-AAA-AGATTGAGGCCACAACGGCAA
* * * *
6952105 ATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGCGA
1 ATCTCACTTTCCTGACAGTGTAATCAAAAGATTGAGGCCACAACGGCAA
* * ** * * * * * * ** **
6952154 ATCTTATTTTCAAG-CAGTG-CAGCGGAACAGATTTAAGCTACAACAACGG
1 ATCTCACTTTCCTGACAGTGTAATC--AAAAGATTGAGGCCACAACGGCAA
* * * *
6952203 ATCTCACTTCCCTGACATTGCAATCAAAAGATTGAGGCCACAACGGTAA
1 ATCTCACTTTCCTGACAGTGTAATCAAAAGATTGAGGCCACAACGGCAA
* ** * * * * * * * * *
6952252 ATCTTACTTTCAAG-CGGTG-CAGCAGAACAGATAGAAGCTACAATGACAG
1 ATCTCACTTTCCTGACAGTGTAATCA-AA-AGATTGAGGCCACAACGGCAA
** * * * * **
6952301 ATCTCACTCCCCTGACATTGCAATCAAAAGATTGAAGCCACAACAGTGA
1 ATCTCACTTTCCTGACAGTGTAATCAAAAGATTGAGGCCACAACGGCAA
* * ** * * * * * *
6952350 ATCTTATTTTCAAG-CGGTG-CAGCGAAACAGATTGAAGCTACAACGGCGA
1 ATCTCACTTTCCTGACAGTGTAATC-AAA-AGATTGAGGCCACAACGGCAA
* * * * *
6952399 ATCTCACTTCCCTAACATTGTAATCAAAAGATTGAGGCCACAATGGCGA
1 ATCTCACTTTCCTGACAGTGTAATCAAAAGATTGAGGCCACAACGGCAA
6952448 ATCT
1 ATCT
6952452 TATTTTCAAG
Statistics
Matches: 268, Mismatches: 109, Indels: 38
0.65 0.26 0.09
Matches are distributed among these distances:
47 11 0.04
48 19 0.07
49 206 0.77
50 21 0.08
51 11 0.04
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (49 bp):
ATCTCACTTTCCTGACAGTGTAATCAAAAGATTGAGGCCACAACGGCAA
Found at i:6952632 original size:50 final size:48
Alignment explanation
Indices: 6952318--6954880 Score: 1696
Period size: 50 Copynumber: 52.9 Consensus size: 48
6952308 TCCCCTGACA
* * * * * * *
6952318 TTGCAATCAAAAGATTGAAGCCACAACAGTGAATCTTATTTTCAAGCG
1 TTGCAATTAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* *** * * * * *
6952366 GTGCAGCGAAACAGATTGAAGCTACAACGGCGAATCTCACTTCCCTAACA
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTT-CCTAGCG
* * * * ** * * * *
6952416 TTGTAATCAAAAGATTGAGGCCACAATGGCGAATCTTATTTTCAAGCG
1 TTGCAATTAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* * * * * *
6952464 GTGCAGCTGAATAGATTGAAGCTACAAC-GCCGGATCTCACTTCCCT-GACA
1 TTGCA-ATTAAAAGATTGAAGCTACAACAG-CGGATCTTACTT-CCTAG-CG
* * * * * *
6952514 TTGCAATTAAAAGATTGAGGCTATAACGGTGAATCTTATTTCC-AGGCG
1 TTGCAATTAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTA-GCG
* * * * * *
6952562 GTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTCCTTGACA
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAG-CG
*
6952612 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCT
1 TTGCAATTAA-AAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * *
6952662 TTGC-AGTAGAATAGATTGGAGCTACAGCAACGGATCTTACTTCC---C-
1 TTGCAATTA-AA-AGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* *
6952707 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTA-CTTCCTAGCG
* * * * *
6952757 TTGCAGTGAAATAGATTGAAGCTACAGCAGCGAATCTTGCTTCC---C-
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
*
6952802 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTTCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * *
6952852 TTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCC---C-
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* ** * *
6952897 TAGCAATTAAAAAGATTGAAGCTATGACAGCGGATTTTATTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTA-CTTCCTAGCG
* * * *
6952947 TTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCT-GACA
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTT-CCTAG-CG
* *
6952997 TTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCA
1 TTGCAATTAA-AAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * ** * *
6953047 TTGCAGTGGAACAGATTGAAGCTACAGTAGCGAATCTTGCTTCC---C-
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
6953092 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * *
6953142 TTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCCTA--G
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTT-CCTAGCG
** * *
6953190 -T--AATTAAAAAGATTGAAGCTATGACAGCGAATCTTATTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTA-CTTCCTAGCG
* * * *
6953237 TTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCT-GACA
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTT-CCTAG-CG
* *
6953287 TTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCA
1 TTGCAATTAA-AAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * * ** * *
6953337 TTGCAGTGGAACAGATTAAAACTACAGTAGCGAATCTTGCTTCC---C-
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
*
6953382 TTGCAATTAAAAAGATTGAAGCTACAACAGTGGATCTTACTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * *
6953432 TTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCC---C-
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* ** *
6953477 TAGCAATTAAAAAGATTGAAGCTATGACAGCGGATCTTATTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTA-CTTCCTAGCG
* * * * *
6953527 TTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTAACA
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTT-CCTAGCG
* *
6953577 TTGTAATTAAGAAGATTGAAGCTACAACAGCGGATTTTACTTTCCTAGCG
1 TTGCAATTAA-AAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * * * * *
6953627 TTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCATTGACA
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAG-CG
6953677 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCG
1 TTGCAATTAA-AAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * *
6953727 TTGCAGTGGAACAGATTGGAGCTACAGCAGCGGATCTTACTT-CT--C-
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* *
6953772 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTA-CTTCCTAGCG
* * * * *
6953822 TTGCAATGAAATGGATTGAAACTACAGCAGCGGATCTTGCTTCC---C-
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
6953867 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * *
6953917 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTTCTTAGCG
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * *
6953967 TTGCAGTGGAACAGATTGAAGCTACAGCAGTGGATCTTACTTCCCTA--G
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTT-CCTAGCG
** * *
6954015 -T--AATTAAAAAGATTGAAGCTATGACAGCAGATCTTATTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTA-CTTCCTAGCG
* * * *
6954062 TTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCT-GACA
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTT-CCTAG-CG
* * *
6954112 TTACAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCA
1 TTGCAATTAA-AAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * *
6954162 TTGTAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCT----
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* * *
6954207 TGGCAATTAAAAAGATTGAAGCTACAACAACGGATCTTATTTTCCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTA-CTTCCTAGCG
* * * ** * *
6954257 TTGCAGTGAAACGGATTGAAGCTACAGTAGAGGATCTTGCTTCC---C-
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
*
6954302 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTTCTAGCG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * *
6954352 TTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTCCCCT-GACA
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACT-TCCTAG-CG
*
6954402 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATATTACTTTCCTAGCG
1 TTGCAATTAA-AAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * * *
6954452 TTGCAGTGGAACAGATTGAAGCTACAGCAGTGGATCTTATTTCC---C-
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* * * * *
6954497 TGGCAATTAAAAAGATTGAAGCTACAACATCGGATCTTATTTTTCTAGTG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTA-CTTCCTAGCG
* * * * *
6954547 TTACAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCC---C-
1 TTGCAATTAAA-AGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* * *
6954592 -TGGAAGTTAAAAAGACTGAAGCTACAACAGCGGATCTTACTTTCCTAGCA
1 TTGCAA-TT-AAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * *
6954642 TTG-TAGTAGAACAGATTGAAGCTACAGCAGGGGATCTTGCTTCCT--C-
1 TTGCAATTA-AA-AGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
* * *
6954688 TT-CAGTTAAAAAGATTGAAGCTACAATAGCGGATCTTACTTTCCTAGTG
1 TTGCAATT-AAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAGCG
* * * * * ** *
6954737 TTGCAGTGGAATAGATTGAAGCTACAACGGCGAATCTT-CTTTCCCCGACA
1 TTGCAAT-TAAAAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTAG-CG
* * *
6954787 TTGCAATTAAAAAGATTGAAG-TCACAACGGCGAATCTTACTTCCCAG-G
1 TTGCAATT-AAAAGATTGAAGCT-ACAACAGCGGATCTTACTTCCTAGCG
* * * *
6954835 TGGTGTAA-TAGAATAGATTGAAGCTACGACGGCGAATCTTACTTCC
1 T--TGCAATTA-AA-AGATTGAAGCTACAACAGCGGATCTTACTTCC
6954881 CCAACATTGC
Statistics
Matches: 1957, Mismatches: 387, Indels: 340
0.73 0.14 0.13
Matches are distributed among these distances:
44 2 0.00
45 445 0.23
46 85 0.04
47 9 0.00
48 31 0.02
49 263 0.13
50 1078 0.55
51 44 0.02
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (48 bp):
TTGCAATTAAAAGATTGAAGCTACAACAGCGGATCTTACTTCCTAGCG
Found at i:6952751 original size:95 final size:95
Alignment explanation
Indices: 6951923--6953958 Score: 1970
Period size: 95 Copynumber: 21.0 Consensus size: 95
6951913 TAACCATAGT
* * * * * * * * *
6951923 TTGCAATTTAAAAGATTGAGGCCACAACGGCGAATTTTACTTTCTCAAGCGGTGCAGCGGAACAG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC-CTAGCGTTGCAGTGGAACAG
* *
6951988 ATTGAAGCTACA--ATGACGGATCTCACTTTCC
65 ATTGAAGCTACAGCA-G-CGGATCTTACTTCCC
* * * * ** * * *
6952019 -TGACATGATAATCAAAAGATTGAGGCCACAACGGCAAATCTTACTTT--TAAGCGGTGCAGCGA
1 TTG-CA--AT--TAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCT-AGCGTTGCAGTGG
* * * *
6952081 AACAGATTGAAGCTACAACGGCAGATCTCACTTCCCTGAC
60 AACAGATTGAAGCTACAGCAGCGGATCTTACTT-CC---C
* * * * * * * *
6952121 ATTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTTCAAGCAG-TGCAGCGGAACA
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC-GTTGCAGTGGAACA
* * * *
6952183 GATTTAAGCTACAACAACGGATCTCACTTCCCTGAC
64 GATTGAAGCTACAGCAGCGGATCTTACTT-CC---C
* * * * *** * * **
6952219 ATTGCAA-TCAAAAGATTGAGGCCACAACGGTAAATCTTACTTT-CAAGCGGTGCAGCAGAACAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAG
* * * *
6952282 ATAGAAGCTACA--ATGACAGATCTCACTCCCCTGAC
65 ATTGAAGCTACAGCA-G-CGGATCTTACT-TCC---C
* * * * * * * * *
6952317 ATTGCAA-TCAAAAGATTGAAGCCACAACAGTGAATCTTA-TTTTCAAGCGGTGCAGCGAAACAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAG
* * * *
6952380 ATTGAAGCTACAACGGCGAATCTCACTTCCC
65 ATTGAAGCTACAGCAGCGGATCTTACTTCCC
** * * * ** * * * *
6952411 TAACATTGTAATCAAAAGATTGAGGCCACAATGGCGAATCTTA-TTTTCAAGCGGTGCAGCT-GA
1 TTGCAAT-T-A--AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAG-TGGA
* * *
6952474 ATAGATTGAAGCTACAAC-GCCGGATCTCACTTCCCTGAC
61 ACAGATTGAAGCTACAGCAG-CGGATCTTACTT-CC---C
* * * * * *
6952513 ATTGCAATT-AAAAGATTGAGGCTATAACGGTGAATCTTA-TTTCC-AGGCGGTGCAGTGGAACA
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAACA
*
6952575 GATTGAAGCTACAACAGCGGATCTTACTTCCTTGAC
64 GATTGAAGCTACAGCAGCGGATCTTACTTCC----C
* * * *
6952611 ATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCTTTGCAGTAGAATAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAG
* *
6952676 ATTGGAGCTACAGCAACGGATCTTACTTCCC
65 ATTGAAGCTACAGCAGCGGATCTTACTTCCC
* * * *
6952707 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAATAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* *
6952772 TTGAAGCTACAGCAGCGAATCTTGCTTCCC
66 TTGAAGCTACAGCAGCGGATCTTACTTCCC
*
6952802 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTTCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
6952867 TTGAAGCTACAGCAGCGGATCTTACTTCCC
66 TTGAAGCTACAGCAGCGGATCTTACTTCCC
* ** * * * *
6952897 TAGCAATTAAAAAGATTGAAGCTATGACAGCGGATTTTATTTTCCTAGCGTTGCAGTGAAACGGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
*
6952962 TTGAAGCTACAACAGCGGATCTTACTTCCCTGAC
66 TTGAAGCTACAGCAGCGGATCTTACTT-CC---C
* * *
6952996 ATTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGCAGTGGAACAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAG
* * *
6953061 ATTGAAGCTACAGTAGCGAATCTTGCTTCCC
65 ATTGAAGCTACAGCAGCGGATCTTACTTCCC
6953092 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
6953157 TTGAAGCTACAGCAGCGGATCTTACTTCCC
66 TTGAAGCTACAGCAGCGGATCTTACTTCCC
* * ** * * * *
6953187 TAGTAATTAAAAAGATTGAAGCTATGACAGCGAATCTTATTTTCCTAGCGTTGCAGTGAAACGGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
*
6953252 TTGAAGCTACAACAGCGGATCTTACTTCCCTGAC
66 TTGAAGCTACAGCAGCGGATCTTACTT-CC---C
* * *
6953286 ATTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGCAGTGGAACAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAG
* * * * *
6953351 ATTAAAACTACAGTAGCGAATCTTGCTTCCC
65 ATTGAAGCTACAGCAGCGGATCTTACTTCCC
*
6953382 TTGCAATTAAAAAGATTGAAGCTACAACAGTGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
6953447 TTGAAGCTACAGCAGCGGATCTTACTTCCC
66 TTGAAGCTACAGCAGCGGATCTTACTTCCC
* ** * * *
6953477 TAGCAATTAAAAAGATTGAAGCTATGACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAACGGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
*
6953542 TTGAAGCTACAACAGCGGATCTTACTTCCCTAAC
66 TTGAAGCTACAGCAGCGGATCTTACTT-CC---C
* * *
6953576 ATTGTAATTAAGAAGATTGAAGCTACAACAGCGGATTTTACTTTCCTAGCGTTGCAGTGGAACAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAG
* *
6953641 ATTGAAGCTACAGCAGCGGATCTTGCTTCATTGACA
65 ATTGAAGCTACAGCAGCGGATCTTACTTC-----CC
*
6953677 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* *
6953742 TTGGAGCTACAGCAGCGGATCTTACTTCTC
66 TTGAAGCTACAGCAGCGGATCTTACTTCCC
* * * * **
6953772 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAATGAAATGGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* *
6953837 TTGAAACTACAGCAGCGGATCTTGCTTCCC
66 TTGAAGCTACAGCAGCGGATCTTACTTCCC
6953867 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
*
6953932 TTGAAGCTACAACAGCGGATCTTACTT
66 TTGAAGCTACAGCAGCGGATCTTACTT
6953959 TCTTAGCGTT
Statistics
Matches: 1681, Mismatches: 195, Indels: 129
0.84 0.10 0.06
Matches are distributed among these distances:
93 3 0.00
94 1 0.00
95 768 0.46
96 12 0.01
97 14 0.01
98 426 0.25
99 42 0.02
100 401 0.24
101 2 0.00
102 3 0.00
103 6 0.00
104 3 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (95 bp):
TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
TTGAAGCTACAGCAGCGGATCTTACTTCCC
Found at i:6952876 original size:290 final size:284
Alignment explanation
Indices: 6952514--6953954 Score: 2089
Period size: 290 Copynumber: 5.0 Consensus size: 284
6952504 TTCCCTGACA
* * * * * *
6952514 TTGCAATT-AAAAGATTGAGGCTATAACGGTGAATCTTA-TTTCC-AGGCGGTGCAGTGGAACAG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGGAACAG
* * * **
6952576 ATTGAAGCTACAACAGCGGATCTTACTTCCTTGACATTGCAATTAAGAAGATTGAAGCTACAACA
65 ATTGAAGCTACAGCAGCGGATCTTACTTCC----C-TAGCAATTAAAAAGATTGAAGCTATGACA
* * * * *
6952641 GCGGATCTTACTTTCCTAGCTTTGCAGTAGAATA-GATTGGAGCTACAGCAACGGATCTTACTTC
125 GCGGATCTTATTTTCCTAGCGTTGCAGT-GAA-ACGATTGAAGCTACAACAGCGGATCTTACTTC
* * * *
6952705 CCTGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAATA
188 CCTGGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACA
6952770 GATTGAAGCTACAGCAGCGAATCTTGCTTCCC
253 GATTGAAGCTACAGCAGCGAATCTTGCTTCCC
*
6952802 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTTCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
6952867 TTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTATGACAGCGGAT
66 TTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTATGACAGCGGAT
*
6952932 TTTATTTTCCTAGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
131 CTTATTTTCCTAGCGTTGCAGTGAAAC-GATTGAAGCTACAACAGCGGATCTTACTTCCCTG---
* *
6952997 TTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGCAGTGGAACAGA
192 --GCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
*
6953062 TTGAAGCTACAGTAGCGAATCTTGCTTCCC
255 TTGAAGCTACAGCAGCGAATCTTGCTTCCC
6953092 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* *
6953157 TTGAAGCTACAGCAGCGGATCTTACTTCCCTAGTAATTAAAAAGATTGAAGCTATGACAGCGAAT
66 TTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTATGACAGCGGAT
6953222 CTTATTTTCCTAGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACA
131 CTTATTTTCCTAGCGTTGCAGTGAAAC-GATTGAAGCTACAACAGCGGATCTTACTTCCCTG---
* *
6953287 TTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGCAGTGGAACAGA
192 --GCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* * *
6953352 TTAAAACTACAGTAGCGAATCTTGCTTCCC
255 TTGAAGCTACAGCAGCGAATCTTGCTTCCC
*
6953382 TTGCAATTAAAAAGATTGAAGCTACAACAGTGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
6953447 TTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTATGACAGCGGAT
66 TTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTATGACAGCGGAT
6953512 CTTATTTTCCTAGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTAACA
131 CTTATTTTCCTAGCGTTGCAGTGAAAC-GATTGAAGCTACAACAGCGGATCTTACTT-CC---C-
* * *
6953577 TTGTAATTAAGAAGATTGAAGCTACAACAGCGGATTTTACTTTCCTAGCGTTGCAGTGGAACAGA
190 TGGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* *
6953642 TTGAAGCTACAGCAGCGGATCTTGCTTCATTGACA
255 TTGAAGCTACAGCAGCGAATCTTGCTTC-----CC
*
6953677 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
* * * **
6953742 TTGGAGCTACAGCAGCGGATCTTACTTCTCTGGCAATTAAAAAGATTGAAGCTACAACAGCGGAT
66 TTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTATGACAGCGGAT
* * * * * *
6953807 CTTATTTTCCTAGCGTTGCAATGAAATGGATTGAAACTACAGCAGCGGATCTTGCTTCCCTTGCA
131 CTTATTTTCCTAGCGTTGCAGTGAAA-CGATTGAAGCTACAACAGCGGATCTTACTTCCCTGGCA
*
6953872 ATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAA
195 ATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAA
* *
6953937 GCTACAACAGCGGATCTT
260 GCTACAGCAGCGAATCTT
6953955 ACTTTCTTAG
Statistics
Matches: 1072, Mismatches: 60, Indels: 40
0.91 0.05 0.03
Matches are distributed among these distances:
283 1 0.00
284 3 0.00
285 81 0.08
286 1 0.00
288 8 0.01
289 25 0.02
290 770 0.72
291 4 0.00
294 3 0.00
295 176 0.16
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (284 bp):
TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
TTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTATGACAGCGGAT
CTTATTTTCCTAGCGTTGCAGTGAAACGATTGAAGCTACAACAGCGGATCTTACTTCCCTGGCAA
TTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAG
CTACAGCAGCGAATCTTGCTTCCC
Found at i:6953985 original size:195 final size:195
Alignment explanation
Indices: 6951923--6954780 Score: 2111
Period size: 195 Copynumber: 14.7 Consensus size: 195
6951913 TAACCATAGT
* * * * * * * * * *
6951923 TTGCAATTTAAAAGATTGAGGCCACAACGGCGAATTTTACTTTCTCAAGCGGTGCAGCGGAACAG
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC-CTAGCGTTGCAGTGAAACAG
* * * * * * *
6951988 ATTGAAGCTACAA-TGACGGATCTCACTTTCCT-GAC-ATGATAAT-CAAAAGATTGAGGCCACA
65 ATTGAAGCTACAACAG-CGGATCTTACTTTCCTAG-CGTTG-CAATGAAAAAGATTGAAGCTACA
* ** * * * * * *
6952049 ACGGCAAATCTTACTTT--TAAGCGGTGCAGCGAAACAGATTGAAGCTACAACGGCAGATCTCAC
127 ACAGCGGATCTTACTTTCCT-AGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTAC
6952112 TTCCCTGAC
191 TT-CC---C
* * * * * * * * *
6952121 ATTGCAA-TCAAAAGATTGAGGCCACAACGGCGAATCTTA-TTTTCAAGCAG-TGCAGCGGAACA
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC-GTTGCAGTGAAACA
* * * * * * * *
6952183 GATTTAAGCTACAACAACGGATCTCACTTCCCT-GACATTGCAAT-CAAAAGATTGAGGCCACAA
64 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-CGTTGCAATGAAAAAGATTGAAGCTACAA
* *** * * * * * *
6952246 CGGTAAATCTTACTTT-CAAGCGGTGCAG-CAGAACAGATAGAAGCTACA--ATGACAGATCTCA
128 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGA-AACAGATTGAAGCTACAGCA-G-CGGATCTTA
*
6952307 CTCCCCTGAC
190 CT-TCC---C
* * * * * * * *
6952317 ATTGCAA-TCAAAAGATTGAAGCCACAACAGTGAATCTTA-TTTTCAAGCGGTGCAGCGAAACAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAG
* * * * * * * * * * **
6952380 ATTGAAGCTACAACGGCGAATCTCACTTCCCTAACATTGTAAT-CAAAAGATTGAGGCCACAATG
65 ATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACA
* * * * * * *
6952444 GCGAATCTTA-TTTTCAAGCGGTGCAGCTG-AATAGATTGAAGCTACAAC-GCCGGATCTCACTT
130 GCGGATCTTACTTTCCTAGCGTTGCAG-TGAAACAGATTGAAGCTACAGCAG-CGGATCTTACTT
6952506 CCCTGAC
193 -CC---C
* * * * * * *
6952513 ATTGCAATT-AAAAGATTGAGGCTATAACGGTGAATCTTA-TTTCC-AGGCGGTGCAGTGGAACA
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA-GCGTTGCAGTGAAACA
* * * *
6952575 GATTGAAGCTACAACAGCGGATCTTAC-TTCCTTGACATTGCAATTAAGAAGATTGAAGCTACAA
64 GATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-CGTTGCAATGAAAAAGATTGAAGCTACAA
* * * *
6952639 CAGCGGATCTTACTTTCCTAGCTTTGCAGT-AGAATAGATTGGAGCTACAGCAACGGATCTTACT
128 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGA-AACAGATTGAAGCTACAGCAGCGGATCTTACT
6952703 TCCC
192 TCCC
* * *
6952707 TGGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAATAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGA
* * * *
6952772 TTGAAGCTACAGCAGCGAATCTTGC-TTCC---C-TTGCAATTAAAAAGATTGAAGCTACAACAG
66 TTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACAG
* *
6952832 CGGATCTTACTTTTCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCC
131 CGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCC
* ** * * *
6952897 TAGCAATTAAAAAGATTGAAGCTATGACAGCGGATTTTATTTTCCTAGCGTTGCAGTGAAACGGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGA
* * * *
6952962 TTGAAGCTACAACAGCGGATCTTACTTCCCT-GACATTGCAATTAAGAAGATTGAAGCTACAACA
66 TTGAAGCTACAACAGCGGATCTTACTTTCCTAG-CGTTGCAATGAAAAAGATTGAAGCTACAACA
* * * * * *
6953026 GCAGATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTACAGTAGCGAATCTTGCTTCC
130 GCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTACTTCC
6953091 C
195 C
*
6953092 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGA
* * * **
6953157 TTGAAGCTACAGCAGCGGATCTTACTTCCCTA--G-T--AATTAAAAAGATTGAAGCTATGACAG
66 TTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACAG
* * * *
6953217 CGAATCTTATTTTCCTAGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCC
131 CGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTACTT-CC
6953282 TGAC
195 ---C
* * * *
6953286 ATTGCAATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGCAGTGGAACAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAG
* * ** * * *
6953351 ATTAAAACTACAGTAGCGAATCTTGC-TTCC---C-TTGCAATTAAAAAGATTGAAGCTACAACA
65 ATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACA
* *
6953411 GTGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCC
130 GCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTACTTCC
6953476 C
195 C
* ** * *
6953477 TAGCAATTAAAAAGATTGAAGCTATGACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAACGGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGA
* * * * * *
6953542 TTGAAGCTACAACAGCGGATCTTACTTCCCTAACATTGTAATTAAGAAGATTGAAGCTACAACAG
66 TTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACAG
* * *
6953607 CGGATTTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTGCTTCAT
131 CGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTACTTC--
*
6953672 TGACA
194 ---CC
* *
6953677 TTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGA
* * * *
6953742 TTGGAGCTACAGCAGCGGATCTTAC-TT-CT--C-TGGCAATTAAAAAGATTGAAGCTACAACAG
66 TTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACAG
* * ** * *
6953802 CGGATCTTATTTTCCTAGCGTTGCAATGAAATGGATTGAAACTACAGCAGCGGATCTTGCTTCCC
131 CGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCC
*
6953867 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGA
1 TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGA
* * * * *
6953932 TTGAAGCTACAACAGCGGATCTTACTTTCTTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAG
66 TTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACAG
* * * * * * * *
6953997 TGGATCTTACTTCCCTA--G-T--AATTAAAAAGATTGAAGCTA-TGACAGCAGATCTTATTTTC
131 CGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAG-CAGCGGATCTTA-CTTC
6954056 CTAGC
194 C---C
* * ** * * * * *
6954061 GTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCT-GACATTACAATTAAGA-
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAG-CGTTGCAGTGAA-AC
* * * * * * *
6954124 AGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGTAGTGGAACAGATTGAAGCTACAG
63 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAA
* * * * * * *
6954189 CAGCGGATCTTAC-TTCCT----TGGCAATTAAAAAGATTGAAGCTACAACAACGGATCTTATTT
128 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTA-CT
6954249 TCCTAGC
192 TCC---C
* * ** ** * * * * *
6954256 GTTGCAGTGAAACGGATTGAAGCTACAGTAGAGGATCTTGC-TTCC---C-TTGCAATTAAAAAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAG
* * * *
6954316 ATTGAAGCTACAACAGCGGATCTTACTTTTCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACA
65 ATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACA
** * * * * *
6954381 GCGGATCTTACTCCCCT-GACATTGCAATTAAGA-AGATTGAAGCTACAACAGCGGATATTACTT
130 GCGGATCTTACTTTCCTAG-CGTTGCAGTGAA-ACAGATTGAAGCTACAGCAGCGGATCTTAC-T
6954444 TCCTAGC
192 TCC---C
* ** * * * * * * *
6954451 GTTGCAGTGGAACAGATTGAAGCTACAGCAGTGGATCTTA-TTTCC---C-TGGCAATTAAAAAG
1 -TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAG
* * * * * * * *
6954511 ATTGAAGCTACAACATCGGATCTTATTTTTCTAGTGTTACAGTGAAACAGATTGAAGCTACAGCA
65 ATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACA
* * * * * * * *
6954576 GCGGATCTTGC-TTCC---C-TGGAAGTTAAAAAGACTGAAGCTACAACAGCGGATCTTACTTTC
130 GCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTACTTCC
6954636 C
195 C
* * * * * *
6954637 TAGCATTGTAGTAGAACAGATTGAAGCTACAGCAGGGGATCTTGC-TTCCT--C-TT-CAGTTAA
1 TTGCAAT-TA--A-AA-AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAA
* * * * * *
6954697 AAAGATTGAAGCTACAATAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAATAGATTGAAGCTAC
61 ACAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTAC
* *
6954762 AACGGCGAATCTT-CTTTCC
126 AACAGCGGATCTTACTTTCC
6954781 CCGACATTGC
Statistics
Matches: 2291, Mismatches: 280, Indels: 185
0.83 0.10 0.07
Matches are distributed among these distances:
185 5 0.00
186 1 0.00
188 1 0.00
189 8 0.00
190 654 0.29
191 23 0.01
192 3 0.00
193 9 0.00
194 46 0.02
195 966 0.42
196 380 0.17
197 34 0.01
198 72 0.03
199 7 0.00
200 82 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (195 bp):
TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGA
TTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAATGAAAAAGATTGAAGCTACAACAG
CGGATCTTACTTTCCTAGCGTTGCAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCC
Found at i:6954067 original size:95 final size:95
Alignment explanation
Indices: 6953879--6954828 Score: 1082
Period size: 95 Copynumber: 9.8 Consensus size: 95
6953869 GCAATTAAAA
* * * *
6953879 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC-GTTGCAGTGGAACAGATTGAAGCTACA
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATT--A----AAAAGATTGAAGCTACA
*
6953943 ACAGCGGATCTTACTTTCTTAGCGTTGCAGTGGAAC
60 ACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * ** *
6953979 AGATTGAAGCTACAGCAGTGGATCTTACTTCCCTAGTAATTAAAAAGATTGAAGCTATGACAGCA
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTACAACAGCG
* *
6954044 GATCTTATTTTCCTAGCGTTGCAGTGAAAC
66 GATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * * *
6954074 GGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTACAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCCCT---A--GCAATTAAAAAGATTGAAGCTACAA
* * *
6954139 CAGCAGATCTTACTTTCCTAGCATTGTAGTGGAAC
61 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * *
6954174 AGATTGAAGCTACAGCAGCGGATCTTACTTCCTTGGCAATTAAAAAGATTGAAGCTACAACAACG
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTACAACAGCG
* *
6954239 GATCTTATTTTCCTAGCGTTGCAGTGAAAC
66 GATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * * * *
6954269 GGATTGAAGCTACAGTAGAGGATCTTGCTTCCCTTGCAATTAAAAAGATTGAAGCTACAACAGCG
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTACAACAGCG
*
6954334 GATCTTACTTTTCTAGCGTTGCAGTGGAAC
66 GATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * *
6954364 AGATTGAAGCTACAACAGCGGATCTTACTCCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCCCT---A--GCAATTAAAAAGATTGAAGCTACAA
*
6954429 CAGCGGATATTACTTTCCTAGCGTTGCAGTGGAAC
61 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * * *
6954464 AGATTGAAGCTACAGCAGTGGATCTTATTTCCCTGGCAATTAAAAAGATTGAAGCTACAACATCG
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTACAACAGCG
* * * * *
6954529 GATCTTATTTTTCTAGTGTTACAGTGAAAC
66 GATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * *
6954559 AGATTGAAGCTACAGCAGCGGATCTTGCTTCCCT-GGAAGTTAAAAAGACTGAAGCTACAACAGC
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAA-TTAAAAAGATTGAAGCTACAACAGC
* * *
6954623 GGATCTTACTTTCCTAGCATTGTAGTAGAAC
65 GGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * * * *
6954654 AGATTGAAGCTACAGCAGGGGATCTTGCTTCCTCT-TCAGTTAAAAAGATTGAAGCTACAATAGC
1 AGATTGAAGCTACAGCAGCGGATCTTACTTCC-CTAGCAATTAAAAAGATTGAAGCTACAACAGC
* *
6954718 GGATCTTACTTTCCTAGTGTTGCAGTGGAAT
65 GGATCTTACTTTCCTAGCGTTGCAGTGGAAC
* * * *
6954749 AGATTGAAGCTACAACGGCGAATCTT-CTTTCCCCGACATTGCAATTAAAAAGATTGAAG-TCAC
1 AGATTGAAGCTACAGCAGCGGATCTTAC-TT--CC--C-TAGCAATTAAAAAGATTGAAGCT-AC
* *
6954812 AACGGCGAATCTTACTT
59 AACAGCGGATCTTACTT
6954829 CCCAGGTGGT
Statistics
Matches: 726, Mismatches: 104, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
94 4 0.01
95 475 0.65
96 3 0.00
97 2 0.00
98 2 0.00
99 3 0.00
100 235 0.32
101 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (95 bp):
AGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATTAAAAAGATTGAAGCTACAACAGCG
GATCTTACTTTCCTAGCGTTGCAGTGGAAC
Found at i:6954081 original size:290 final size:290
Alignment explanation
Indices: 6952068--6954728 Score: 1977
Period size: 290 Copynumber: 9.2 Consensus size: 290
6952058 CTTACTTTTA
* * * * * * *
6952068 AGCGGTGCAGCGAAACAGATTGAAGCTACAACGGCAGATCTCACTTCCCTGACATTGCAA-TCAA
1 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTT-CC--ACATTGCAATTAAA
* * * * * * * *
6952132 AAGATTGAGGCCACAACGGCGAATCTTA-TTTTCAAGCAG-TGCAGCGGAACAGATTTAAGCTAC
63 AAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGC-GTTGCAGTGGAACAGATTGAAGCTAC
* * ** * * * * * ***
6952195 AACAACGGATCTCACTTCCCTGACATTGCAAT-CAAAAGATTGAGGCCACAACGGTAAATCTTAC
127 AGCAGCGGATCTTGCTT--CTG-CCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTAC
* * ** * * * **
6952259 TTT-CAAGCGGTGCAGCAGAACAGATAGAAGCTACA--ATGACAGATCTCACTCCCCT-GACATT
189 TTTCCTA-C-GTTCAGTGGAACAGATTGAAGCTACAGCA-G-CGGATCTTACTTTCCTAG-CATT
* * * * *
6952320 GCAATCAAA-AGATTGAAGCCACAACAGTGAATCTTATTTT-CA
249 G-AGT-AAACAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
* * * * * * * *
6952362 AGCGGTGCAGCGAAACAGATTGAAGCTACAACGGCGAATCTCACTTCCCTAACATTGTAA-TCAA
1 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTT-CC--ACATTGCAATTAAA
* * ** * * * * *
6952426 AAGATTGAGGCCACAATGGCGAATCTTA-TTTTCAAGCGGTGCAGCT-GAATAGATTGAAGCTAC
63 AAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAG-TGGAACAGATTGAAGCTAC
* ** * * * * * * *
6952489 AAC-GCCGGATCTCACTTCCCTGACATTGCAAT-TAAAAGATTGAGGCTATAACGGTGAATCTTA
127 AGCAG-CGGATCTTGCTT--CTG-CCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTA
* * *
6952552 -TTTCC-AGGCGGTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTAC-TTCCTTGACATT
188 CTTTCCTA--C-GTTCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAG-CATT
* *
6952614 GCAATTAAGA-AGATTGAAGCTACAACAGCGGATCTTACTTTCCT
249 G--AGTAA-ACAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
* * * * *
6952658 AGCTTTGCAGTAGAATA--GATTGGAGCTACAGCAACGGATCTTACTTCC-C-TGGCAATTAAAA
1 AGCGTTGCAGT-GAA-ACGGATTGAAGCTACAACAGCGGATCTTACTTCCACATTGCAATTAAAA
* * *
6952719 AGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAGTGAAATAGATTGAAGCTACAG
64 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAG
* * *
6952784 CAGCGAATCTTGCTTC--CCTTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTTC
129 CAGCGGATCTTGCTTCTGCCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCC
*
6952847 TAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATT-A--AAA
194 TA-CGTT-CAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGC-ATTGAGTAAA
** *
6952909 -AGATTGAAGCTATGACAGCGGATTTTATTTTCCT
256 CAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
*
6952943 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAG
1 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTT-CC--ACATTGCAATTAAA
* *
6953008 AAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGCAGTGGAACAGATTGAAGCTACA
63 AAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACA
* * *
6953073 GTAGCGAATCTTGCTTC--CCTTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
128 GCAGCGGATCTTGCTTCTGCCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
* *
6953136 CTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGTAATT-A--AA
193 CTA-CGTT-CAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAG-CATTGAGTAA
** *
6953198 A-AGATTGAAGCTATGACAGCGAATCTTATTTTCCT
255 ACAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
*
6953233 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTGCAATTAAG
1 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTT-CC--ACATTGCAATTAAA
* * * *
6953298 AAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGCAGTGGAACAGATTAAAACTACA
63 AAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACA
* * * *
6953363 GTAGCGAATCTTGCTTC--CCTTGCAATTAAAAAGATTGAAGCTACAACAGTGGATCTTACTTTC
128 GCAGCGGATCTTGCTTCTGCCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
*
6953426 CTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTCCCTAGCAATT-A--AA
193 CTA-CGTT-CAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGC-ATTGAGTAA
**
6953488 A-AGATTGAAGCTATGACAGCGGATCTTATTTTCCT
255 ACAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
* *
6953523 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTAACATTGTAATTAAG
1 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTT-CC--ACATTGCAATTAAA
*
6953588 AAGATTGAAGCTACAACAGCGGATTTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACA
63 AAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACA
* * *
6953653 GCAGCGGATCTTGCTTCATTGACATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATCTTACT
128 GCAGCGGATCTTGCTTC--TG-CCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTACT
* *
6953718 TTCCTAGCGTTGCAGTGGAACAGATTGGAGCTACAGCAGCGGATCTTAC-TTCTCTGGCAATT-A
190 TTCCTA-CGTT-CAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTTC-CTAGC-ATTGA
6953781 --AAA-AGATTGAAGCTACAACAGCGGATCTTATTTTCCT
251 GTAAACAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
* * * * *
6953818 AGCGTTGCAATGAAATGGATTGAAACTACAGCAGCGGATCTTGCTTCC-C-TTGCAATTAAAAAG
1 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCACATTGCAATTAAAAAG
*
6953881 ATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACA
66 ATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCA
* * * * * * * *
6953946 GCGGATCTTACTTTCTTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGTGGATCTTACTTCC
131 GCGGATCTTGC-TTC-T-GCCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTC
* ** * * * * *
6954011 CTA-G-T-AATTAAAAAGATTGAAGCTA-TGACAGCAGATCTTATTTTCCTAGCGTTGCAGTGAA
193 CTACGTTCAGTGGAACAGATTGAAGCTACAG-CAGCGGATCTTACTTTCCTAGCATTG-AGT-AA
* * *
6954072 ACGGATTGAAGCTACAACAGCGGATCTTACTTCCCT
255 ACAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
* * * * * * * * **
6954108 -GACATTACAATTAAGA-AGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGTAGTGG
1 AG-CGTTGCAGTGAA-ACGGATTGAAGCTACAACAGCGGATCTTAC-TTCC-A-CATTGCAATTA
* * * * ** *
6954171 AACAGATTGAAGCTACAGCAGCGGATCTTAC-TTCCT----TGGCAATTAAAAAGATTGAAGCTA
61 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTA
* * ** * * ** ** * *
6954231 CAACAACGGATCTTATTTTCCTAGCGTTGCAGTGAAACGGATTGAAGCTACAGTAGAGGATCTTG
126 CAGCAGCGGATCTT-GCTT-CT-GCCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTA
* ** * * * *
6954296 C-TTCC--C-TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTTCTAGCGTTGCA
188 CTTTCCTACGTT-CAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCATTG-A
* * **
6954357 GTGGAACAGATTGAAGCTACAACAGCGGATCTTACTCCCCT
251 GT-AAACAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
* * * * * * * **
6954398 -GACATTGCAATTAAGA-AGATTGAAGCTACAACAGCGGATATTACTTTCCTAGCGTTGCAGTGG
1 AG-CGTTGCAGTGAA-ACGGATTGAAGCTACAACAGCGGATCTTAC-TTCC-A-CATTGCAATTA
* * * * * ** *
6954461 AACAGATTGAAGCTACAGCAGTGGATCTTA-TTTCC---C-TGGCAATTAAAAAGATTGAAGCTA
61 AAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTA
* * ** ** * * * * *
6954521 CAACATCGGATCTTATTTTTCTAGTGTTACAGTGAAACAGATTGAAGCTACAGCAGCGGATCTTG
126 CAGCAGCGGATC-T-TGCTTCT-GCCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTA
* ** ** * * *
6954586 CTTCCCT--G-GAAGTTAAAAAGACTGAAGCTACAACAGCGGATCTTACTTTCCTAGCATTGTAG
188 CTTTCCTACGTTCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCATTG-AG
* * **
6954648 TAGAACAGATTGAAGCTACAGCAGGGGATCTT-GCTTCCT
252 TA-AACAGATTGAAGCTACAACAGCGGATCTTATTTTCCT
* ** *
6954687 --C-TT-CAGTTAAAAAGATTGAAGCTACAATAGCGGATCTTACTT
1 AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTT
6954729 TCCTAGTGTT
Statistics
Matches: 2092, Mismatches: 204, Indels: 152
0.85 0.08 0.06
Matches are distributed among these distances:
283 1 0.00
284 9 0.00
285 129 0.06
286 10 0.00
287 2 0.00
288 11 0.01
289 38 0.02
290 1277 0.61
291 33 0.02
292 29 0.01
293 48 0.02
294 228 0.11
295 240 0.11
296 33 0.02
297 3 0.00
298 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (290 bp):
AGCGTTGCAGTGAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCACATTGCAATTAAAAAG
ATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCA
GCGGATCTTGCTTCTGCCTTGCAATGAAAAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTA
CGTTCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTACTTTCCTAGCATTGAGTAAACAGAT
TGAAGCTACAACAGCGGATCTTATTTTCCT
Found at i:6954849 original size:100 final size:100
Alignment explanation
Indices: 6953689--6954891 Score: 475
Period size: 95 Copynumber: 12.4 Consensus size: 100
6953679 GCAATTAAGA
* * * * * * * ** * * *
6953689 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGGAGCTACAG
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTACAA
* * *
6953754 CAGCGGATCTTAC-TTCTC--T-G-GCAATTA-AAA
66 CAGCGAATCTTACTTTCCCAGTGGTGCAA-TAGAAT
* * * * * * * * ** * *
6953784 AGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAATGAAATGGATTGAAACTACAG
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTACAA
* * *
6953849 CAGCGGATCTTGC-TTCCC--T--TGCAATTA-AAA
66 CAGCGAATCTTACTTTCCCAGTGGTGCAA-TAGAAT
* * * * * * * ** *
6953879 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTACAA
* ** * * * * *
6953944 CAGCGGATCTTACTTTCTTAGCGTTGCAGTGGAAC
66 CAGCGAATCTTACTTTCCCAGTGGTGCAATAGAAT
* * * * * * **
6953979 AGATTGAAGCTACAGCAGTGGATCTTACTT--CC--C-TAGTAATTAAAAAGATTGAAGCTATGA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTACAA
* * * * *
6954039 CAGC-AGATCTTATTTTCCTAGCGTTGCAGT-GAA-
66 CAGCGA-ATCTTACTTTCCCAGTGGTGCAATAGAAT
* * ** * *
6954072 ACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTACAATTAAGAAGATTGAAGCTAC
1 A--GATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTAC
* *** * * * *
6954137 AACAGC-AGATCTTACTTTCCTAGCATTGTAGTGGAAC
64 AACAGCGA-ATCTTACTTTCCCAGTGGTGCAATAGAAT
* * *
6954174 AGATTGAAGCTACAGCAGCGGATCTTACTT---C--C-TTGGCAATTAAAAAGATTGAAGCTACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATT-GCAATTAAAAAGATTGAAGCTACA
* * * * * * *
6954233 ACAACGGATCTTATTTTCCTAGCGTTGCAGT-GAA-
65 ACAGCGAATCTTACTTTCCCAGTGGTGCAATAGAAT
*** * * *
6954267 ACGGATTGAAGCTACAGTAGAGGATCTTGCTT--CC--C-TTGCAATTAAAAAGATTGAAGCTAC
1 A--GATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTAC
* * * * * * * *
6954327 AACAGCGGATCTTACTTTTCTAGCGTTGCAGTGGAAC
64 AACAGCGAATCTTACTTTCCCAGTGGTGCAATAGAAT
* * * *
6954364 AGATTGAAGCTACAACAGCGGATCTTAC-TCCCCTGACATTGCAATTAAGAAGATTGAAGCTACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCC-AACATTGCAATTAAAAAGATTGAAGCTACA
* * * * * * * *
6954428 ACAGCGGATATTACTTTCCTAGCGTTGCAGTGGAAC
65 ACAGCGAATCTTACTTTCCCAGTGGTGCAATAGAAT
* * * * * *
6954464 AGATTGAAGCTACAGCAGTGGATCTTA-TT-TCC--C-TGGCAATTAAAAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTACAA
* * * * * * * * *
6954524 CATCGGATCTTATTTTTCTAGTGTTACAGT-GAAAC
66 CAGCGAATCTTACTTTCCCAGTGGTGCAATAG-AAT
* * * * * *
6954559 AGATTGAAGCTACAGCAGCGGATCTTGCTT--CC--C--TGGAAGTTAAAAAGACTGAAGCTACA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAA-TTAAAAAGATTGAAGCTACA
* * *** * * *
6954618 ACAGCGGATCTTACTTTCCTAGCATTGTAGTAGAAC
65 ACAGCGAATCTTACTTTCCCAGTGGTGCAATAGAAT
* * * * *
6954654 AGATTGAAGCTACAGCAGG-GGATCTTGCTT--CC-TC-TT-CAGTTAAAAAGATTGAAGCTACA
1 AGATTGAAGCTACAAC-GGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTACA
* * * * * *
6954713 ATAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAAT
65 ACAGCGAATCTTACTTTCCCAGTGGTGCAATAGAAT
*
6954749 AGATTGAAGCTACAACGGCGAATCTT-CTTTCCCCGACATTGCAATTAAAAAGATTGAAG-TCAC
1 AGATTGAAGCTACAACGGCGAATCTTAC-TTCCCCAACATTGCAATTAAAAAGATTGAAGCT-AC
* *
6954812 AACGGCGAATCTTAC-TTCCCAGGTGGTGTAATAGAAT
64 AACAGCGAATCTTACTTTCCCA-GTGGTGCAATAGAAT
*
6954849 AGATTGAAGCTACGACGGCGAATCTTACTTCCCCAACATTGCA
1 AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCA
6954892 GCAGATTAGA
Statistics
Matches: 942, Mismatches: 118, Indels: 91
0.82 0.10 0.08
Matches are distributed among these distances:
93 2 0.00
94 16 0.02
95 603 0.64
96 20 0.02
97 5 0.01
98 2 0.00
99 13 0.01
100 276 0.29
101 4 0.00
102 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (100 bp):
AGATTGAAGCTACAACGGCGAATCTTACTTCCCCAACATTGCAATTAAAAAGATTGAAGCTACAA
CAGCGAATCTTACTTTCCCAGTGGTGCAATAGAAT
Found at i:6954855 original size:290 final size:284
Alignment explanation
Indices: 6953784--6954861 Score: 1092
Period size: 290 Copynumber: 3.7 Consensus size: 284
6953774 GCAATTAAAA
* * * * * *
6953784 AGATTGAAGCTACAACAGCGGATCTTATTTTCCTAGCGTTGCAATGAA-ATGGATTGAAACTACA
1 AGATTGAAGCTACAACAGCGGATCTTA-CTTCCTA-CATTACAATTAAGA-AGATTGAAGCTACA
* * * ** * *
6953848 GCAGCGGATCTTGC-TTCC---C-TTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCTTACT
63 ACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTT-CT
* ** * * * * *
6953908 TTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAACAGCGGATCTTACTTTCTTAGCGT-TGCA
127 TTCC---C-TTGCAATTAAAAAGATTGAAGCTACAACAACGGATCTTATTTTCCTAG-GTGTGTA
* * * * *
6953972 GTGGAACAGATTGAAGCTACAGCAGTGGATCTTACTTCCCTAGTAATTAAAAAGATTGAAGCTAT
187 AT-GAA-AGATTGAAGCTACAGCAGAGGATCTTGCTTCCCT-GCAATTAAAAAGATTGAAGCTAC
* * *
6954037 GACAGCAGATCTTATTTTCCTAGCGTTGCAGTGAAAC
249 AACAGCGGATCTTACTTTCCTAGCGTTGCAGTG-AAC
*
6954074 GGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTACAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTT-CCT-ACATTACAATTAAGAAGATTGAAGCTACAA
* * *
6954139 CAGCAGATCTTACTTTCCTAGCATTGTAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTAC-T
64 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTT-CTT
* *
6954203 T-CCTTGGCAATTAAAAAGATTGAAGCTACAACAACGGATCTTATTTTCCTAGCGT-TGCAGTGA
128 TCCCTT-GCAATTAAAAAGATTGAAGCTACAACAACGGATCTTATTTTCCTAG-GTGTGTAATGA
*
6954266 AACGGATTGAAGCTACAGTAGAGGATCTTGCTTCCCTTGCAATTAAAAAGATTGAAGCTACAACA
191 AA--GATTGAAGCTACAGCAGAGGATCTTGCTTCCC-TGCAATTAAAAAGATTGAAGCTACAACA
*
6954331 GCGGATCTTACTTTTCTAGCGTTGCAGTGGAAC
253 GCGGATCTTACTTTCCTAGCGTTGCAGT-GAAC
* *
6954364 AGATTGAAGCTACAACAGCGGATCTTACTCCCCTGACATTGCAATTAAGAAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACT-TCCT-ACATTACAATTAAGAAGATTGAAGCTACAA
* * *
6954429 CAGCGGATATTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGTGGATCTTATTT
64 CAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTCTTT
* * *
6954494 CCCTGGCAATTAAAAAGATTGAAGCTACAACATCGGATCTTATTTTTCTA-GTGT-TACAGTGAA
129 CCCTTGCAATTAAAAAGATTGAAGCTACAACAACGGATCTTATTTTCCTAGGTGTGTA-A-TG-A
* * *
6954557 ACAGATTGAAGCTACAGCAGCGGATCTTGCTTCCCTGGAAGTTAAAAAGACTGAAGCTACAACAG
191 A-AGATTGAAGCTACAGCAGAGGATCTTGCTTCCCTGCAA-TTAAAAAGATTGAAGCTACAACAG
* *
6954622 CGGATCTTACTTTCCTAGCATTGTAGTAGAAC
254 CGGATCTTACTTTCCTAGCGTTGCAGT-GAAC
* * * * * *
6954654 AGATTGAAGCTACAGCAGGGGATCTTGCTTCCT-C-TT-CAGTTAAAAAGATTGAAGCTACAATA
1 AGATTGAAGCTACAACAGCGGATCTTACTTCCTACATTACAATTAAGAAGATTGAAGCTACAACA
* * * * *
6954716 GCGGATCTTACTTTCCTAGTGTTGCAGTGGAATAGATTGAAGCTACAACGGCGAATCTTCTTTCC
66 GCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTCTTT--
** * * *
6954781 CCGACATTGCAATTAAAAAGATTGAAG-TCACAACGGCGAATCTTA-CTTCCCAGGTGGTGTAAT
129 CC--C-TTGCAATTAAAAAGATTGAAGCT-ACAACAACGGATCTTATTTTCCTAGGT-GTGTAAT
6954844 AGAATAGATTGAAGCTAC
189 -GAA-AGATTGAAGCTAC
6954862 GACGGCGAAT
Statistics
Matches: 679, Mismatches: 77, Indels: 64
0.83 0.09 0.08
Matches are distributed among these distances:
285 78 0.11
286 2 0.00
287 3 0.00
288 4 0.01
289 21 0.03
290 513 0.76
291 17 0.03
292 3 0.00
293 1 0.00
294 3 0.00
295 34 0.05
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (284 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTCCTACATTACAATTAAGAAGATTGAAGCTACAACA
GCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGCGGATCTTCTTTCC
CTTGCAATTAAAAAGATTGAAGCTACAACAACGGATCTTATTTTCCTAGGTGTGTAATGAAAGAT
TGAAGCTACAGCAGAGGATCTTGCTTCCCTGCAATTAAAAAGATTGAAGCTACAACAGCGGATCT
TACTTTCCTAGCGTTGCAGTGAAC
Found at i:6954855 original size:385 final size:385
Alignment explanation
Indices: 6953929--6954861 Score: 1149
Period size: 385 Copynumber: 2.4 Consensus size: 385
6953919 GCAGTGGAAC
* *
6953929 AGATTGAAGCTACAACAGCGGATCTTACTTTCTTAGCGTTGCAGTGGAACAGATTGAAGCTACAG
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAA
* * * * ** * *
6953994 CAGTGGATCTTACTTCCCT---A--GTAATTAAAAAGATTGAAGCTATGACAGC-AGATCTTATT
66 CAGCGAATCTTACTCCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGA-ATATTACT
* * * * * * *
6954053 TTCCTAGCGTTGCAGT-GAAACGGATTGAAGCTACAACAGCGGATCTTACTTCCCTGACATTACA
130 TTCCCAGCGTTGCAATAG-AACAGATTGAAGCTACAGCAGTGGATCTTATTTCCCTG-----GCA
* ** *
6954117 ATTAAGAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTGTAGTGGAACAGATTGAA
189 ATTAAAAAGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTACAGTGAAACAGATTGAA
* * *
6954182 GCTACAGCAGCGGATCTTACTTCCTTGGCAATTAAAAAGATTGAAGCTACAACAACGGATCTTAT
254 GCTACAGCAGCGGATCTTACTTCCCTGGCAATTAAAAAGACTGAAGCTACAACAACGGATCTTAC
* * *
6954247 TTTCCTAGCGTTGCAGTGAAACGGATTGAAGCTACAGTAGAGGATCTTGCTTCCCTTGCAATTAA
319 TTTCCTAGCATTGCAGTGAAACAGATTGAAGCTACAGCAGAGGATCTTGCTTCCCTTGCAATTAA
6954312 AA
384 AA
*
6954314 AGATTGAAGCTACAACAGCGGATCTTACTTTTCTAGCGTTGCAGTGGAACAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAA
* * *
6954379 CAGCGGATCTTACTCCCCTGACATTGCAATTAAGAAGATTGAAGCTACAACAGCGGATATTACTT
66 CAGCGAATCTTACTCCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGAATATTACTT
* * *
6954444 TCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAGCAGTGGATCTTATTTCCCTGGCAATTAAAA
131 TCCCAGCGTTGCAATAGAACAGATTGAAGCTACAGCAGTGGATCTTATTTCCCTGGCAATTAAAA
* * * * **
6954509 AGATTGAAGCTACAACATCGGATCTTATTTTTCTAGTGTTACAGTGAAACAGATTGAAGCTACAG
196 AGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTACAGTGAAACAGATTGAAGCTACAG
* *
6954574 CAGCGGATCTTGCTTCCCTGG-AAGTTAAAAAGACTGAAGCTACAACAGCGGATCTTACTTTCCT
261 CAGCGGATCTTACTTCCCTGGCAA-TTAAAAAGACTGAAGCTACAACAACGGATCTTACTTTCCT
* * *
6954638 AGCATTGTAGT-AGAACAGATTGAAGCTACAGCAGGGGATCTTGCTTCCTCTT-CAGTTAAAA
325 AGCATTGCAGTGA-AACAGATTGAAGCTACAGCAGAGGATCTTGCTTCC-CTTGCAATTAAAA
* * *
6954699 AGATTGAAGCTACAATAGCGGATCTTACTTTCCTAGTGTTGCAGTGGAATAGATTGAAGCTACAA
1 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAA
* * *
6954764 CGGCGAATCTT-CTTTCCCC-GACATTGCAATTAAAAAGATTGAAG-TCACAACGGCGAATCTTA
66 CAGCGAATCTTAC--TCCCCTGACATTGCAATTAAAAAGATTGAAGCT-ACAACAGCGAATATTA
* *
6954826 C-TTCCCAG-GTGGTGTAATAGAATAGATTGAAGCTAC
128 CTTTCCCAGCGT--TGCAATAGAACAGATTGAAGCTAC
6954862 GACGGCGAAT
Statistics
Matches: 480, Mismatches: 53, Indels: 30
0.85 0.09 0.05
Matches are distributed among these distances:
383 2 0.00
384 11 0.02
385 376 0.78
386 8 0.02
388 1 0.00
390 81 0.17
391 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (385 bp):
AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAGATTGAAGCTACAA
CAGCGAATCTTACTCCCCTGACATTGCAATTAAAAAGATTGAAGCTACAACAGCGAATATTACTT
TCCCAGCGTTGCAATAGAACAGATTGAAGCTACAGCAGTGGATCTTATTTCCCTGGCAATTAAAA
AGATTGAAGCTACAACAGCAGATCTTACTTTCCTAGCATTACAGTGAAACAGATTGAAGCTACAG
CAGCGGATCTTACTTCCCTGGCAATTAAAAAGACTGAAGCTACAACAACGGATCTTACTTTCCTA
GCATTGCAGTGAAACAGATTGAAGCTACAGCAGAGGATCTTGCTTCCCTTGCAATTAAAA
Found at i:6954962 original size:16 final size:16
Alignment explanation
Indices: 6954938--6954968 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6954928 GATCACATCC
*
6954938 AGTCTTATCTCCCTAA
1 AGTCCTATCTCCCTAA
6954954 AGTCCTATCTCCCTA
1 AGTCCTATCTCCCTA
6954969 CAGTAGATTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.35, G:0.06, T:0.35
Consensus pattern (16 bp):
AGTCCTATCTCCCTAA
Found at i:6955902 original size:44 final size:44
Alignment explanation
Indices: 6955037--6956299 Score: 166
Period size: 44 Copynumber: 28.8 Consensus size: 44
6955027 GTCCTATCTA
* * * *
6955037 TCACCCTAAGCAGTAGTGGAGTAGATTGAAGGTTGCAAATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * *
6955081 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATAT-TA
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-AT-TCTG
* * * * * * * * *
6955125 TCTTCCC-AATACTGTGGAGAAGCAGATTTAAGCCA-T-TAG-TCCTA
1 TC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTG
* * * * * ** *
6955169 TCATCCTAAGCAGTAATGGAGTAGGTTGAAGGTTACATATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * * * * *
6955213 TCACCCTAAGCAATATTGGAGCAGATCGAAGATGGT-GAATCTTA
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TG
* * * * * * * * *
6955257 TCTTCCC-AATACAGTGGAGAAGCAAATTTAAGCCATT-T--ATCCTA
1 TC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTG
* * * *
6955301 TCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * * *
6955345 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATGT-
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * * * * * * **
6955387 TCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCA-T-TAG-TCCAA
1 TC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTG
* * * * *
6955431 TCTCCCTAAGCAGTAGTGGAGTAGGTTGAATATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * * * *
6955475 CCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATCTTA
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TG
* * * * * * * * *
6955519 TCTTCCC-AATACAGTAGAGAAGCAAATTTAAACCATT-T-G-TCCTA
1 TC-ACCCTAA-GCAGTAGTGGAGCAGA-TTGAA-GATTGTAGATTCTG
* * * * *
6955563 TCACCCTAAGCAGTAGTAGAGGAGGTTAAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * * * * * *
6955607 TCACCCTAAACAATAGTTGAGCAAATCGAAGATGGT-GAATGT-TA
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-AT-TCTG
** * * * **
6955651 TCTTCCTAA-TA-TAGTGGAGAAGCAGATTTAAGCCA-T-TAG-TCCAA
1 TCACCCTAAGCAGTAGT-G-G-AGCAGATTGAAG--ATTGTAGATTCTG
* * * *
6955695 TCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * * * *
6955739 CCACCCTAAGCAGTACTGGAGCAGATCGAAGATGGT-GAATCT-
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * * * * * * *
6955781 T-ATCTTCTCAATACAGTGGAGAAGCAGATTTAAGCCA-T-TAG-TCCTA
1 TCA-C-CCT-AA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTG
* * *
6955827 TCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * *
6955871 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGT-GAATGT-TA
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAG-AT-TCTG
* * * * * * * **
6955915 TCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCA-T-TAG-TCCAA
1 TC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTG
* * * * **
6955959 TCTCCCTAAGCAGTAGTCGAGTAGGTTGAAGATTACAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* * * * *
6956003 TCACCCTAAGCAGTAGTGGGGCAGATCGAAGATGGT-GAATCTTA
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TG
* * * * * * * **
6956047 TCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCA-T-TAG-TCCAA
1 TC-ACCCTAA-GCAGTAGTGGAGCAGATTGAAG--ATTGTAGATTCTG
* ** * ** *
6956091 TCTCCCTAAGCAGTAGTGGAATAGGTTGAAGATTACAGATTTTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
* ** * * *
6956135 TCACTCTAAGCAGTAGTGGAGCAGACCGAAGATGGT-GAATCTTA
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTC-TG
* * * * * *
6956179 TCTTCCC-AATACAGT-G-GAGATGCAAATTTAAG-TCAT-TAG-TCCTA
1 TC-ACCCTAA-GCAGTAGTG-GA-GCAGATTGAAGAT--TGTAGATTCTG
* * * *
6956223 TCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATTCTG
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
*
6956267 TCACCCTAAGCAGTAGTGGAGCAGATCGAAGAT
1 TCACCCTAAGCAGTAGTGGAGCAGATTGAAGAT
6956300 GGTGAATCTT
Statistics
Matches: 818, Mismatches: 299, Indels: 204
0.62 0.23 0.15
Matches are distributed among these distances:
41 12 0.01
42 21 0.03
43 199 0.24
44 413 0.50
45 145 0.18
46 18 0.02
47 10 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TCACCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATTCTG
Found at i:6956385 original size:132 final size:132
Alignment explanation
Indices: 6955034--6956319 Score: 2029
Period size: 132 Copynumber: 9.8 Consensus size: 132
6955024 GTAGTCCTAT
* * *
6955034 CTATCACCCTAAGCAGTAGTGGAGTAGATTGAAGGTTGCAAATTCTGTCACCCTAAGCAGTAGTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* *
6955099 GAGCAGATCGAAGATGGTGAATATTATCTTCCCAATACTGTGGAGAAGCAGATTTAAGCCATTAG
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
6955164 TC
131 TC
* * * * * * *
6955166 CTATCATCCTAAGCAGTAATGGAGTAGGTTGAAGGTTACATATTCTGTCACCCTAAGCAATATTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
*
6955231 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAAATTTAAGCCATTTA
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA-TTA
6955296 -TC
130 GTC
*
6955298 CTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
*
6955363 GAGCAGATCGAAGATGGTGAAT-GT-TCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
6955426 TC
131 TC
* * * *
6955428 CAATCTCCCTAAGCAGTAGTGGAGTAGGTTGAATATTGCAGATTCTGCCACCCTAAGCAGTAGTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* * * *
6955493 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTAGAGAAGCAAATTTAAACCATTTG
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
6955558 TC
131 TC
* * * * * *
6955560 CTATCACCCTAAGCAGTAGTAGAGGAGGTTAAAGATTGCAGATTCTGTCACCCTAAACAATAGTT
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* * * *
6955625 GAGCAAATCGAAGATGGTGAATGTTATCTTCCTAATATAGTGGAGAAGCAGATTTAAGCCATTAG
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
6955690 TC
131 TC
* * * *
6955692 CAATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGCCACCCTAAGCAGTACTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
*
6955757 GAGCAGATCGAAGATGGTGAATCTTATCTTCTCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
6955822 TC
131 TC
* *
6955824 CTATCACCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGTAGATTCTGTCACCCTAAGCAGTAGTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
*
6955889 GAGCAGATCGAAGATGGTGAATGTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
6955954 TC
131 TC
* * * *
6955956 CAATCTCCCTAAGCAGTAGTCGAGTAGGTTGAAGATTACAGATTCTGTCACCCTAAGCAGTAGTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
*
6956021 GGGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
6956086 TC
131 TC
* * * * * *
6956088 CAATCTCCCTAAGCAGTAGTGGAATAGGTTGAAGATTACAGATTTTGTCACTCTAAGCAGTAGTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
* * * *
6956153 GAGCAGACCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGATGCAAATTTAAGTCATTAG
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
6956218 TC
131 TC
*
6956220 CTATCACCCTAAGCAGTAGCGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
1 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
6956285 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
66 GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
6956320 GATAGTAGGG
Statistics
Matches: 1054, Mismatches: 96, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
129 3 0.00
130 118 0.11
131 2 0.00
132 928 0.88
133 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (132 bp):
CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTG
GAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAG
TC
Found at i:6959267 original size:5 final size:5
Alignment explanation
Indices: 6959254--6959349 Score: 85
Period size: 5 Copynumber: 19.8 Consensus size: 5
6959244 AAAAATATTT
* * *
6959254 AAAAA AAAAG AAAAG AAAAG AAAA- ATAAG -AAAG TAAAG AAAAG AAAA-
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
* * *
6959301 ATAAG -AAAG TAAAG AAAAG AAAAAG AATA- AAAAG AAAAG AAAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG -AAAAG AAAA
6959350 ATGAGAGGCC
Statistics
Matches: 75, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
4 15 0.20
5 50 0.67
6 10 0.13
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (5 bp):
AAAAG
Found at i:6959272 original size:14 final size:14
Alignment explanation
Indices: 6959255--6959344 Score: 85
Period size: 14 Copynumber: 6.4 Consensus size: 14
6959245 AAAATATTTA
6959255 AAAAAAAAGAAAAG
1 AAAAAAAAGAAAAG
*
6959269 AAAAGAAAA-ATAAG
1 AAAA-AAAAGAAAAG
**
6959283 AAAGTAAAGAAAAG
1 AAAAAAAAGAAAAG
*
6959297 AAAAATAAG-AAAG
1 AAAAAAAAGAAAAG
*
6959310 TAAAGAAAAGAAAAAG
1 -AAAAAAAAG-AAAAG
*
6959326 AATAAAAAGAAAAG
1 AAAAAAAAGAAAAG
6959340 AAAAA
1 AAAAA
6959345 GAAAAATGAG
Statistics
Matches: 59, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
13 7 0.12
14 37 0.63
15 11 0.19
16 4 0.07
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.06
Consensus pattern (14 bp):
AAAAAAAAGAAAAG
Found at i:6959291 original size:23 final size:23
Alignment explanation
Indices: 6959260--6959351 Score: 123
Period size: 23 Copynumber: 3.9 Consensus size: 23
6959250 ATTTAAAAAA
6959260 AAAGAAAAGAAAAGAAAAATAAG
1 AAAGAAAAGAAAAGAAAAATAAG
*
6959283 AAAGTAAAGAAAAGAAAAATAAG
1 AAAGAAAAGAAAAGAAAAATAAG
*
6959306 AAAGTAAAGAAAAGAAAAAGAATAA-
1 AAAGAAAAGAAAAG--AAA-AATAAG
6959331 AAAGAAAAGAAAAAGAAAAAT
1 AAAGAAAAG-AAAAGAAAAAT
6959352 GAGAGGCCAA
Statistics
Matches: 63, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
23 39 0.62
24 3 0.05
25 11 0.17
26 10 0.16
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (23 bp):
AAAGAAAAGAAAAGAAAAATAAG
Found at i:6960443 original size:90 final size:90
Alignment explanation
Indices: 6960227--6960806 Score: 259
Period size: 89 Copynumber: 6.4 Consensus size: 90
6960217 GATGAATTGA
* * * * * * *
6960227 AGATCATAGCAAACCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T-TACT--AG-TCT
1 AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAACAGATTGAAGCTAAATTGCAGATCT
* *
6960287 TATCTCCCTAAAGTTGCAGTGAAGCAG-
66 TATCTCTCTGAAGTTGCAGT--AG-AGT
** * * * * *
6960314 ACTGAAGATAGCAAATCTTATTTCCCAAAATTTATAGTGGAACAGATTGAAGCTAAATTGCAGAT
1 A--GATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAACAGATTGAAGCTAAATTGCAGAT
* *
6960379 CTTATCTCTTTGAAGTTACAGTAGAGT
64 CTTATCTCTCTGAAGTTGCAGTAGAGT
* * * * * *
6960406 AGATCATAGCAAACCTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAG-T-TACT--AG-TCT
1 AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAACAGATTGAAGCTAAATTGCAGATCT
* *
6960466 TATCTCCCTGACGTTGCAGTGAAGCAGACT
66 TATCTCTCTGAAGTTGCAGT--AG-AG--T
** ** * * * * *
6960496 A-AAGATAGTGAATCTTATTTCCCTGAAGTTACAGTGGAACAAATTGAAGCTATAATTGCATATC
1 AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAACAGATTGAAGCTA-AATTGCAGATC
*
6960560 TTATCTCTCTGAAGTTGCAGTAGAGA
65 TTATCTCTCTGAAGTTGCAGTAGAGT
** * * * * * *
6960586 AGATCATAGCAAAATTTTTCTCCCTGAAGTTACAGT-GAAGTAGGTTGAAGTTACA----AG-TC
1 AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAA-CAGATTGAAGCTAAATTGCAGATC
*
6960645 TTATCTCCCTGAAGTTGCAGTGGAGCAGGCT
65 TTATCTCTCTGAAGTTGCAGT--AG-A-G-T
* * * * * * * *
6960676 GAAGATAAT-G--AATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTATAAATTACAG
1 --AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAACAGATTGAAGC--TAAATTGCAG
* * * * *
6960738 ATCTTATCTCTCAGAGGTTACAGTAAAGC
62 ATCTTATCTCTCTGAAGTTGCAGTAGAGT
* **
6960767 AGATCAT-GTCAAACCTTATCTCCCTGAAGTTGTAGTGGAA
1 AGATCATAG-CAAACCTTATCTCCCTAAAGTTACAGTGGAA
6960807 AAGGTTAAAA
Statistics
Matches: 367, Mismatches: 87, Indels: 73
0.70 0.17 0.14
Matches are distributed among these distances:
85 41 0.11
86 3 0.01
87 5 0.01
88 5 0.01
89 112 0.31
90 50 0.14
91 43 0.12
92 40 0.11
93 5 0.01
94 21 0.06
95 23 0.06
96 19 0.05
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (90 bp):
AGATCATAGCAAACCTTATCTCCCTAAAGTTACAGTGGAACAGATTGAAGCTAAATTGCAGATCT
TATCTCTCTGAAGTTGCAGTAGAGT
Found at i:6960653 original size:180 final size:180
Alignment explanation
Indices: 6960225--6960805 Score: 806
Period size: 180 Copynumber: 3.2 Consensus size: 180
6960215 GGGATGAATT
*
6960225 GAAGATCATAGCAAACCTTATTTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTAT
1 GAAGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTAT
* ** ** * *
6960290 CTCCCTAAAGTTGCAGTGAAGCAGACTGAAGATAGCAAATCTTATTTCCCAAAATTTATAGTGGA
66 CTCCCTGAAGTTGCAGTGAAGCAGACTGAAGATAGTGAATCTTATTTCCCTGAAGTTACAGTGGA
*
6960355 ACAGATTGAAGCTA-AATTGCAGATCTTATCTCTTTGAAGTTACAGTAGA
131 ACAGATTGAAGCTATAATTGCAGATCTTATCTCTCTGAAGTTACAGTAGA
* * *
6960404 GTAGATCATAGCAAACCTTATCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTAT
1 GAAGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTAT
* *
6960469 CTCCCTGACGTTGCAGTGAAGCAGACTAAAGATAGTGAATCTTATTTCCCTGAAGTTACAGTGGA
66 CTCCCTGAAGTTGCAGTGAAGCAGACTGAAGATAGTGAATCTTATTTCCCTGAAGTTACAGTGGA
* * *
6960534 ACAAATTGAAGCTATAATTGCATATCTTATCTCTCTGAAGTTGCAGTAGA
131 ACAGATTGAAGCTATAATTGCAGATCTTATCTCTCTGAAGTTACAGTAGA
** * * * * *
6960584 GAAGATCATAGCAAAATTTTTCTCCCTGAAGTTACAGTGAAGTAGGTTGAAGTTACAAGTCTTAT
1 GAAGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTAT
* * * *
6960649 CTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATAATGAATCTTATTTCCCTGAAGTTGCAGTGGA
66 CTCCCTGAAGTTGCAGTGAAGCAGACTGAAGATAGTGAATCTTATTTCCCTGAAGTTACAGTGGA
* * * * * *
6960714 ATAGATTAAAGCTATAAATTACAGATCTTATCTCTCAGAGGTTACAGTAAA
131 ACAGATTGAAGCTAT-AATTGCAGATCTTATCTCTCTGAAGTTACAGTAGA
* *
6960765 GCAGATCAT-GTCAAACCTTATCTCCCTGAAGTTGTAGTGGA
1 GAAGATCATAG-CAAACCTTATCTCCCTGAAGTTGCAGTGGA
6960806 AAAGGTTAAA
Statistics
Matches: 350, Mismatches: 49, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
179 130 0.37
180 159 0.45
181 61 0.17
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (180 bp):
GAAGATCATAGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTAT
CTCCCTGAAGTTGCAGTGAAGCAGACTGAAGATAGTGAATCTTATTTCCCTGAAGTTACAGTGGA
ACAGATTGAAGCTATAATTGCAGATCTTATCTCTCTGAAGTTACAGTAGA
Found at i:6961083 original size:96 final size:97
Alignment explanation
Indices: 6960918--6961106 Score: 254
Period size: 96 Copynumber: 2.0 Consensus size: 97
6960908 AAAGCCACAA
* * * *
6960918 ACCTTATCTCCCTGAAGTTGCAGCGGAGCAGGACTGAAGTTAACAAATCTTATTTCCCTAAAGTT
1 ACCTTATCTCCCTAAAGTTGCAGCAGAGCAGGACTAAAGATAACAAATCTTATTTCCCTAAAGTT
* * * *
6960983 GCAGTGGAATAGATTGAAGCTATAAATTGTAG
66 GCAGTAGAACAGATTAAAGCTACAAATTGTAG
* * * * *
6961015 ACCTTATCTCCCTAAAGTTGTAGTAGAGTA-GACTAAAGATAACGAATCTTATTTCCCTGAAGTT
1 ACCTTATCTCCCTAAAGTTGCAGCAGAGCAGGACTAAAGATAACAAATCTTATTTCCCTAAAGTT
6961079 GCAGTAGAACAGATTAAAGCTACAAATT
66 GCAGTAGAACAGATTAAAGCTACAAATT
6961107 ACAATTCAGA
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
96 54 0.68
97 25 0.32
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (97 bp):
ACCTTATCTCCCTAAAGTTGCAGCAGAGCAGGACTAAAGATAACAAATCTTATTTCCCTAAAGTT
GCAGTAGAACAGATTAAAGCTACAAATTGTAG
Found at i:6961085 original size:45 final size:45
Alignment explanation
Indices: 6960920--6961472 Score: 137
Period size: 45 Copynumber: 12.1 Consensus size: 45
6960910 AGCCACAAAC
* ** * * *
6960920 CTTATCTCCCTGAAGTTGCAGCGGAGCAGGACTGAAGTTAACAAAT
1 CTTATCTCCCTAAAGTTGCAGTAGAGTA-GACTGAAGATAACGAAT
* * * * * *
6960966 CTTATTTCCCTAAAGTTGCAGTGGAATAGATTGAAGCTATAAATTGTAGAC
1 CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAG--AT-AA-CG-A-AT
* *
6961017 CTTATCTCCCTAAAGTTGTAGTAGAGTAGACTAAAGATAACGAAT
1 CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGATAACGAAT
* * ** * * * *
6961062 CTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCT-ACAAATT
1 CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGATAACGAA-T
* * * ** ** * *
6961107 ACAATTCAGATCCCCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAAC-AGAT
1 -C--TT---ATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGAT-AACGA-AT
* * * *
6961159 CTTATCTCTCTGAAGTTGCAGTAGAGTAGA-T---CATAGC-AAT
1 CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGATAACGAAT
* * ** * * *
6961199 CTTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAG-TTACTAGT
1 C-TTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGATAACGAAT
* * * * * * *
6961244 CTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAAATAGCTAGT
1 CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGATAACGAAT
* * * * * * *
6961289 CTTATTTCCTTAAAGTTGTAGTAGAATGGATTGAAGATAAATTGTAAAT
1 CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGAT-AA-CG--AAT
* * * *
6961338 CTTATCTCTCTGAAA-TTGCAGTAAAGTAGA-T---CATATC-AAGT
1 CTTATCTCCCT-AAAGTTGCAGTAGAGTAGACTGAAGATAACGAA-T
* * * * ** * * *
6961379 CTTATCCCCCTGAAGTTGCAGTGGAGCAGGTTGAAG-TTACTAGT
1 CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGATAACGAAT
* * * *
6961423 CTTATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATAGCGAAT
1 CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGATAACGAAT
6961468 CTTAT
1 CTTAT
6961473 TTTCTTGAAG
Statistics
Matches: 372, Mismatches: 99, Indels: 73
0.68 0.18 0.13
Matches are distributed among these distances:
40 7 0.02
41 48 0.13
42 4 0.01
44 70 0.19
45 92 0.25
46 47 0.13
47 2 0.01
48 7 0.02
49 25 0.07
50 4 0.01
51 61 0.16
52 2 0.01
53 3 0.01
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (45 bp):
CTTATCTCCCTAAAGTTGCAGTAGAGTAGACTGAAGATAACGAAT
Found at i:6961129 original size:96 final size:95
Alignment explanation
Indices: 6960949--6961183 Score: 211
Period size: 96 Copynumber: 2.4 Consensus size: 95
6960939 AGCGGAGCAG
* * * * * * * **
6960949 GACTGAAGTTAACAAATCTTATTTCCCTAAAGTTGCAGTGGAATAGATTGAAGCTATAAATTGTA
1 GACTAAAGATAAC-AATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAATTACA
** * * **
6961014 GACCTTATCTCCCTAAAGTTGTAGTAGAGTA
65 GACCAGATCCCCCTAAAGTTGCAGTAGAACA
6961045 GACTAAAGATAACGAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAATTACA
1 GACTAAAGATAAC-AATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAATTACA
* * *
6961110 -ATTCAGATCCCCCTGAAGTTGCAGTGGAACA
65 GA-CCAGATCCCCCTAAAGTTGCAGTAGAACA
** * * *
6961141 GGTTAAAAATAAACAGATCTTATCTCTCTGAAGTTGCAGTAGA
1 GACTAAAGAT-AACA-ATCTTATTTCCCTGAAGTTGCAGTAGA
6961184 GTAGATCATA
Statistics
Matches: 112, Mismatches: 24, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
95 1 0.01
96 83 0.74
97 28 0.25
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (95 bp):
GACTAAAGATAACAATCTTATTTCCCTGAAGTTGCAGTAGAACAGATTAAAGCTACAAATTACAG
ACCAGATCCCCCTAAAGTTGCAGTAGAACA
Found at i:6961254 original size:44 final size:44
Alignment explanation
Indices: 6961120--6961982 Score: 332
Period size: 44 Copynumber: 19.4 Consensus size: 44
6961110 ATTCAGATCC
* * ** *
6961120 CCCTGAAGTTGCAGTGGAACAGGTTAAAAATAAACAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACA-AG-TCTTATCT
* * ***
6961166 CTCTGAAGTTGCAGT--AG-A-GTAGATCATAGCAA-TCTTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTC-TTATCT
* *
6961207 CCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
* * ** ** * *
6961251 CCCTGAAGTTGTAGTGGAGTAGACTGAAAATAGCTAGTCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCT
* * * * *
6961296 CCTTAAAGTTGTAGT--AGAATGGATTGAAGATA-AATTGTAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCA-GG-TTGAAGTTACAA--G----TCTTATCT
* * * * *** *
6961345 CTCTGAAATTGCAGT--A--AAGTAGATCATATCAAGTCTTATCC
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCT
*
6961386 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACTAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
* * ** * *
6961430 CCTTGAAGTTGCAGTGGAGTAGACTGAAGATAGCGAA-TCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-C-AAGTCTTATCT
* * * * * * *
6961475 TCTTGAAGTTACAGTGGAACAGATTGAAGCTAAATTGCAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACA----AG-TCTTATCT
** * * * * *
6961524 CTTTGAAGTTGCAGTAGAGCA-GAT-CA--TATCAAGCCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCT
** * * *
6961565 CCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCT
* * * ** * *
6961610 CTCTAAAGTTGCAGTGGAACAAATTGAAGCTATAAATTACAGATCCTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAG-T-T--A-CA-AG-TCTTATCT
* * * **
6961661 CTCTGAAGTTGCAGTAGAGCAGATT--A--TAGCAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCT
* * * *
6961702 CCCTGAATTTGCAGTGGAGTAAGTTGAAGTTACGAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
* * *
6961746 TCCTAAAGTTGCAGTGGAGCAAGTTGAAGTTACAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
* * * * * * * *
6961790 CCCTAAAGTTGCAGTAGAGCAGATTAAAGCTATAGGCCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
* * * * *
6961834 CCCTGAAGTTACAGTGGAGCAGGTTGGAGCTACAAATTTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
* * * * * *
6961878 CCCTGAAGATACAGTGGAGTAGATT-AAATCTACAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGT-TACAAGTCTTATCT
** * ** *
6961922 CATTGAAGTTGCAGTGGAGCAGGTTGAAATTACATTTCCTATAC-
1 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTAT-CT
*
6961966 CCCTGAAGTTACAGTGG
1 CCCTGAAGTTGCAGTGG
6961983 GTTAGAATAA
Statistics
Matches: 612, Mismatches: 157, Indels: 98
0.71 0.18 0.11
Matches are distributed among these distances:
40 2 0.00
41 88 0.14
42 11 0.02
43 15 0.02
44 266 0.43
45 134 0.22
46 17 0.03
47 6 0.01
48 1 0.00
49 44 0.07
50 1 0.00
51 27 0.04
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCT
Found at i:6961359 original size:179 final size:178
Alignment explanation
Indices: 6961157--6961627 Score: 618
Period size: 179 Copynumber: 2.6 Consensus size: 178
6961147 AAATAAACAG
* *
6961157 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATAGCAATCTTTATCTCCCTAAAGTTGCAGT
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATATCAATC-TTATCTCCCTGAAGTTGCAGT
* *
6961222 GGAGCAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGTAGTGGAGTAGACTGAAAATAGCTA
65 GGAGCAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAAATAGCGA
* ** ** *
6961287 GTCTTATTTCCTTAAAGTTGTAGTAGAATGGATTGAAGATAAATTGTAA
130 ATCTTATTTCCTTAAAGTTACAGTAGAACAGATTGAAGATAAATTGCAA
* * *
6961336 ATCTTATCTCTCTGAAATTGCAGTAAAGTAGATCATATCAAGTCTTATCCCCCTGAAGTTGCAGT
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATATCAA-TCTTATCTCCCTGAAGTTGCAGT
* *
6961401 GGAGCAGGTTGAAGTTACTAGTCTTATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATAGCGA
65 GGAGCAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAAATAGCGA
* * * * *
6961466 ATCTTATTTTCTTGAAGTTACAGTGGAACAGATTGAAGCTAAATTGCAG
130 ATCTTATTTCCTTAAAGTTACAGTAGAACAGATTGAAGATAAATTGCAA
* * * *
6961515 ATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCATATCAAGCCTTATTTCCCTGAAGTTGCAGT
1 ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATATCAA-TCTTATCTCCCTGAAGTTGCAGT
** * * * * * *
6961580 GGAGCAGACTGAAGATAGCAAATCTTATTTCTCTAAAGTTGCAGTGGA
65 GGAGCAGGTTGAAGTTA-CTAGTCTTATCTCCCTGAAGTTGCAGTGGA
6961628 ACAAATTGAA
Statistics
Matches: 254, Mismatches: 36, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
179 228 0.90
180 26 0.10
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.33
Consensus pattern (178 bp):
ATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCATATCAATCTTATCTCCCTGAAGTTGCAGTG
GAGCAGGTTGAAGTTACTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAAATAGCGAA
TCTTATTTCCTTAAAGTTACAGTAGAACAGATTGAAGATAAATTGCAA
Found at i:6961718 original size:137 final size:136
Alignment explanation
Indices: 6961423--6961855 Score: 501
Period size: 137 Copynumber: 3.2 Consensus size: 136
6961413 AGTTACTAGT
* * * *
6961423 CTTATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGATAGCGAATCTTATTT-TCTTGAAGTTAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCTC-TAAAGTTGC
* * * *
6961487 AGTGGAACAGATTGAAGC-TAAATTGCAGATCTTATCTCTTTGAAGTTGCAGTAGAGCAGATCAT
65 AGTGGAACAAATTGAAGCTTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAT
*
6961551 ATCAAGC
130 AGCAAGC
* *
6961558 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAATCTTATTTCTCTAAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCTCTAAAGTTGCA
*
6961623 GTGGAACAAATTGAAGCTATAAATTACAGATCCTATCTCTCTGAAGTTGCAGTAGAGCAGATTAT
66 GTGGAACAAATTGAAGCT-TAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAT
*
6961688 AGCAAAC
130 AGCAAGC
* * * * *
6961695 CTTATCTCCCTGAATTTGCAGTGGAGTA-AGTTGAAGTTA-CGAGTCTTATCTTC-CTAAAGTTG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CTGAAGATAGCGAATCTTAT-TTCTCTAAAGTTG
* * * * *
6961757 CAGTGGAGCAAGTTGAAG-TT--A-CA-AG-TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTA
64 CAGTGGAACAAATTGAAGCTTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTA
*
6961816 AAGCTATAGGC
129 TAGC-A-A-GC
*
6961827 CTTATCTCCCTGAAGTTACAGTGGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAG
6961856 GTTGGAGCTA
Statistics
Matches: 258, Mismatches: 31, Indels: 20
0.83 0.10 0.06
Matches are distributed among these distances:
129 34 0.13
130 3 0.01
131 2 0.01
132 27 0.10
134 1 0.00
135 73 0.28
136 36 0.14
137 82 0.32
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (136 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCTCTAAAGTTGCA
GTGGAACAAATTGAAGCTTAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTATA
GCAAGC
Found at i:6963888 original size:34 final size:35
Alignment explanation
Indices: 6963833--6963899 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
6963823 CAAACACCAA
*
6963833 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
6963868 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
6963900 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:6976633 original size:9 final size:9
Alignment explanation
Indices: 6976619--6976648 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
6976609 CAATTATAAA
6976619 TTTTTATAT
1 TTTTTATAT
6976628 TTTTTATAAT
1 TTTTTAT-AT
6976638 TTTTTATAT
1 TTTTTATAT
6976647 TT
1 TT
6976649 GTGTTATGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTATAT
Found at i:6976634 original size:19 final size:19
Alignment explanation
Indices: 6976612--6976648 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
6976602 CTACCAACAA
6976612 TTATAAATTTTTATATTTT
1 TTATAAATTTTTATATTTT
*
6976631 TTATAATTTTTTATATTT
1 TTATAAATTTTTATATTT
6976649 GTGTTATGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
TTATAAATTTTTATATTTT
Found at i:6976730 original size:21 final size:20
Alignment explanation
Indices: 6976675--6976740 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 20
6976665 TTTTATTATT
* *
6976675 AAAAAAATCTAAAAATATAA
1 AAAAAAATCTAAAATTTTAA
* *
6976695 AAAAAACTCCCAAAATTTTGAA
1 AAAAAAAT-CTAAAATTTT-AA
6976717 AAAAAAATCTAAAATTTCTAA
1 AAAAAAATCTAAAATTT-TAA
6976738 AAA
1 AAA
6976741 TACCTAAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
20 7 0.19
21 20 0.54
22 10 0.27
ACGTcount: A:0.65, C:0.11, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAAAATCTAAAATTTTAA
Found at i:6976739 original size:20 final size:19
Alignment explanation
Indices: 6976675--6976753 Score: 61
Period size: 19 Copynumber: 3.9 Consensus size: 19
6976665 TTTTATTATT
* *
6976675 AAAAAAATCTAAAAATATA
1 AAAAAAATCTAAAATTTTA
*
6976694 AAAAAAACTCCCAAAATTTTGAA
1 AAAAAAA-T-CTAAAATTTT--A
6976717 AAAAAAATCTAAAATTTCT-
1 AAAAAAATCTAAAATTT-TA
* *
6976736 AAAAATACCTAAAATTTT
1 AAAAAAATCTAAAATTTT
6976754 TCCCTAATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
18 1 0.02
19 22 0.45
20 1 0.02
21 15 0.31
22 2 0.04
23 8 0.16
ACGTcount: A:0.61, C:0.11, G:0.01, T:0.27
Consensus pattern (19 bp):
AAAAAAATCTAAAATTTTA
Done.