Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 26 of 211
Found at i:7823983 original size:21 final size:21
Alignment explanation
Indices: 7823959--7824008 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
7823949 GGCCGCAAGA
*
7823959 GAAGCAGAGACTGCAGGGAGG
1 GAAGCAGAGACTGCAGCGAGG
* *
7823980 GAAGTAGAGGCTGCAGCGAGG
1 GAAGCAGAGACTGCAGCGAGG
7824001 GAAGCAGA
1 GAAGCAGA
7824009 ACAGCTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.46, T:0.06
Consensus pattern (21 bp):
GAAGCAGAGACTGCAGCGAGG
Found at i:7824373 original size:43 final size:43
Alignment explanation
Indices: 7824325--7824616 Score: 381
Period size: 43 Copynumber: 6.8 Consensus size: 43
7824315 ATTTTTTGCA
*
7824325 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCATTTTTCGGC
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTCGGC
*
7824368 TAAGCGCCGCTAGAGACCATGGTCTATAGTGGCGTTTTTCGGC
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTCGGC
* * *
7824411 TAAGCGCCACTATAGACCATGGTCTATAGTGGCGTTTTTCGTC
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTCGGC
* * * * * *
7824454 TAAGCGCCACGAAAGACCATGGTCTATAGTAGCATTTTTAGTC
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTCGGC
* * *
7824497 TAAGCGCTGCTAAAGACCATGGTCTATAGTGGCGTTTTTTGGA
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTCGGC
* * * **
7824540 TAAGCGCCGCTAAAGACTATTGTCTATAGTGGTGTTTTT--TT
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTCGGC
* *
7824581 TAAGTGCCGCTAAAGACCATGGTCTATAGCGGCGTT
1 TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTT
7824617 GTAAAGAAAA
Statistics
Matches: 220, Mismatches: 29, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
41 31 0.14
43 189 0.86
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGACCATGGTCTATAGTGGCGTTTTTCGGC
Found at i:7825434 original size:30 final size:29
Alignment explanation
Indices: 7825396--7825503 Score: 87
Period size: 29 Copynumber: 3.7 Consensus size: 29
7825386 TTAATTAATT
*
7825396 TTTTAAAATTTAAAAATTA-TAAAAACTA
1 TTTTAAAAATTAAAAATTACTAAAAACTA
* * *
7825424 TTTCTAAAAATTAAAAATCATTTAAAACTA
1 TTT-TAAAAATTAAAAATTACTAAAAACTA
* *
7825454 --TTAAAAATTATAAAAATTACAAATAAAATA
1 TTTTAAAAA-T-TAAAAATTACTAA-AAACTA
*
7825484 TTTTTAAATATTAAAAATTA
1 -TTTTAAAAATTAAAAATTA
7825504 ATTAAATGCT
Statistics
Matches: 63, Mismatches: 9, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
27 6 0.10
28 5 0.08
29 23 0.37
30 13 0.21
31 9 0.14
32 1 0.02
33 6 0.10
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (29 bp):
TTTTAAAAATTAAAAATTACTAAAAACTA
Found at i:7826701 original size:21 final size:23
Alignment explanation
Indices: 7826668--7826710 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 23
7826658 TTTGTGCATG
7826668 TATCAATCTTCT-A-CCTTCACA
1 TATCAATCTTCTAAGCCTTCACA
7826689 TATCATATC-TCTAAGCCTTCAC
1 TATCA-ATCTTCTAAGCCTTCAC
7826711 TCTCTCACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 8 0.42
22 4 0.21
23 7 0.37
ACGTcount: A:0.28, C:0.33, G:0.02, T:0.37
Consensus pattern (23 bp):
TATCAATCTTCTAAGCCTTCACA
Found at i:7832760 original size:18 final size:20
Alignment explanation
Indices: 7832733--7832772 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
7832723 TTTTAAAATT
*
7832733 TTTTATAAA-TATTTTG-AA
1 TTTTAAAAATTATTTTGTAA
7832751 TTTTAAAAATTATTTTGTAA
1 TTTTAAAAATTATTTTGTAA
7832771 TT
1 TT
7832773 ATTGTTGAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 7 0.37
20 4 0.21
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (20 bp):
TTTTAAAAATTATTTTGTAA
Found at i:7839178 original size:104 final size:104
Alignment explanation
Indices: 7839054--7839265 Score: 325
Period size: 104 Copynumber: 2.0 Consensus size: 104
7839044 ATAAAGTATT
* * * *
7839054 TTTTATATAACTATTAACAGTAGATAGTTTATTTATCAAAATATCATTATCAATATTAAATATAA
1 TTTTATATAAATATTAACAGTAAATAATTTATTTATCAAAATATCATTATCAATACTAAATATAA
* ** *
7839119 AATTAAAATATACTATCTGTTTTTGTACTCTATATTAAA
66 AATTAAAACATACTATCCATTTTTATACTCTATATTAAA
* *
7839158 TTTTATGTAAATATTAACAGTAAATAATTTATTTATCAAAATATCATTATCGATACTAAATATAA
1 TTTTATATAAATATTAACAGTAAATAATTTATTTATCAAAATATCATTATCAATACTAAATATAA
*
7839223 AATTAACACATACTATCCATTTTTATACTCTATATTAAA
66 AATTAAAACATACTATCCATTTTTATACTCTATATTAAA
7839262 TTTT
1 TTTT
7839266 GTACAACATT
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
104 97 1.00
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (104 bp):
TTTTATATAAATATTAACAGTAAATAATTTATTTATCAAAATATCATTATCAATACTAAATATAA
AATTAAAACATACTATCCATTTTTATACTCTATATTAAA
Found at i:7846531 original size:19 final size:19
Alignment explanation
Indices: 7846507--7846545 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7846497 CTTACATGAG
7846507 ATATAGTTTTTTTGTACAT
1 ATATAGTTTTTTTGTACAT
7846526 ATATAGTTTTTTTGTACAT
1 ATATAGTTTTTTTGTACAT
7846545 A
1 A
7846546 CTTCTATGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.56
Consensus pattern (19 bp):
ATATAGTTTTTTTGTACAT
Found at i:7848589 original size:44 final size:44
Alignment explanation
Indices: 7848522--7848636 Score: 142
Period size: 44 Copynumber: 2.6 Consensus size: 44
7848512 CTTCGGTCCA
* * *
7848522 CTCCACTGCAACGTCAGGGAGATAGGATTTG-TAACTTCAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGTTAA-TTCAATCTG
* * **
7848566 CTCTACTGCAACTTCAGGGAGATAAGATTAGTTTATTCGGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAGTTAATTCAATCTG
*
7848610 CTCCACTGTAACTTCAGGGAGATAAGA
1 CTCCACTGCAACTTCAGGGAGATAAGA
7848637 CCTGCTGCGA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 59 0.97
45 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTAGTTAATTCAATCTG
Found at i:7863806 original size:27 final size:27
Alignment explanation
Indices: 7863776--7863848 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 27
7863766 TGTCTTGAAT
7863776 TTGTTAGATATTGATTATGTTTTAAGC
1 TTGTTAGATATTGATTATGTTTTAAGC
7863803 TTGTTAGATATTGAATTGATTATGTTTTAAGC
1 TTGTTAG--A-T--ATTGATTATGTTTTAAGC
*
7863835 TTGTTGGATATTGA
1 TTGTTAGATATTGA
7863849 AATGATTGAC
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
27 12 0.30
29 2 0.05
30 2 0.05
32 24 0.60
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTTAAGC
Found at i:7863821 original size:32 final size:32
Alignment explanation
Indices: 7863785--7863855 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
7863775 TTTGTTAGAT
7863785 ATTGATTATGTTTTAAGCTTGTTAGATATTGA
1 ATTGATTATGTTTTAAGCTTGTTAGATATTGA
*
7863817 ATTGATTATGTTTTAAGCTTGTTGGATATTGA
1 ATTGATTATGTTTTAAGCTTGTTAGATATTGA
*
7863849 AATGATT
1 ATTGATT
7863856 GACAATGACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.49
Consensus pattern (32 bp):
ATTGATTATGTTTTAAGCTTGTTAGATATTGA
Found at i:7869092 original size:15 final size:16
Alignment explanation
Indices: 7869072--7869104 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7869062 CTTAATGTAC
7869072 ATAACA-CTTTTATAA
1 ATAACATCTTTTATAA
*
7869087 ATAACATTTTTTATAA
1 ATAACATCTTTTATAA
7869103 AT
1 AT
7869105 TTACTATTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (16 bp):
ATAACATCTTTTATAA
Found at i:7869897 original size:23 final size:23
Alignment explanation
Indices: 7869868--7870012 Score: 191
Period size: 23 Copynumber: 6.3 Consensus size: 23
7869858 ATAAGTGCCA
*
7869868 CACTGATGTGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
7869891 CATTGATACGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
7869914 CACTGAAATGTAGTCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
7869937 CACTGATATGTAGCAGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
7869960 CACTGAAATGTAGCTGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
7869983 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
7870006 CACTGAT
1 CACTGAT
7870013 CAATAACACT
Statistics
Matches: 103, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 103 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:7869935 original size:46 final size:45
Alignment explanation
Indices: 7869876--7870011 Score: 218
Period size: 46 Copynumber: 3.0 Consensus size: 45
7869866 CACACTGATG
* *
7869876 TGTAGCCGAAGCTACCATTGATACGTAGCCGTAGCTACCACTGAAA
1 TGTAG-CGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAAA
*
7869922 TGTAGTCGAAGCTACCACTGATATGTAGCAGTAGCTACCACTGAAA
1 TGTAG-CGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAAA
7869968 TGTAGCTGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGA
1 TGTAGC-GAAGCTACCACTGATATGTAGCCGTAGCTACCACTGA
7870012 TCAATAACAC
Statistics
Matches: 84, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
45 1 0.01
46 83 0.99
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (45 bp):
TGTAGCGAAGCTACCACTGATATGTAGCCGTAGCTACCACTGAAA
Found at i:7870498 original size:30 final size:29
Alignment explanation
Indices: 7870464--7870521 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
7870454 TCCTTGACTC
7870464 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTT-CCCCT
* * *
7870494 AAACTTTTGCATATTTACACTTTTCCCC
1 AAACTTTTGCAAAATTACAATTTTCCCC
7870522 AAAGCTCGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.40
Consensus pattern (29 bp):
AAACTTTTGCAAAATTACAATTTTCCCCT
Found at i:7871787 original size:18 final size:18
Alignment explanation
Indices: 7871764--7871805 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
7871754 TTCAAGGTGT
7871764 AATTAATTTAAAATT-TTC
1 AATTAA-TTAAAATTATTC
*
7871782 AATTAATTAAAATTATTT
1 AATTAATTAAAATTATTC
7871800 AATTAA
1 AATTAA
7871806 AAACTTATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
AATTAATTAAAATTATTC
Found at i:7872129 original size:10 final size:10
Alignment explanation
Indices: 7872102--7872141 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
7872092 AAAAGAAGTT
*
7872102 TTTAATATTA
1 TTTAATAATA
*
7872112 TTTGATAATA
1 TTTAATAATA
7872122 TTTAATAATA
1 TTTAATAATA
7872132 TTTATATAAT
1 TTTA-ATAAT
7872142 TGTGAATGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 21 0.81
11 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (10 bp):
TTTAATAATA
Found at i:7873322 original size:20 final size:21
Alignment explanation
Indices: 7873273--7873323 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
7873263 ATTACAAAAT
*
7873273 AATTTCAAAATAATTTTCAAA
1 AATTTCAAAATAATTATCAAA
*
7873294 AAGTT-AAAATAATTAT-AAA
1 AATTTCAAAATAATTATCAAA
*
7873313 ATTTTCAAAAT
1 AATTTCAAAAT
7873324 TTATGTATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 6 0.24
20 15 0.60
21 4 0.16
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.37
Consensus pattern (21 bp):
AATTTCAAAATAATTATCAAA
Found at i:7873368 original size:20 final size:20
Alignment explanation
Indices: 7873330--7873368 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7873320 AAATTTATGT
*
7873330 ATTCTTAAAAAATTCTAAAA
1 ATTCTTAAAAAATTATAAAA
7873350 ATTC-TAAAAAATATATAAA
1 ATTCTTAAAAAAT-TATAAA
7873369 GAAAGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.33
Consensus pattern (20 bp):
ATTCTTAAAAAATTATAAAA
Found at i:7874181 original size:5 final size:6
Alignment explanation
Indices: 7874164--7874188 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7874154 AAAATCTTTC
7874164 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
7874189 AGAGTACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:7874433 original size:15 final size:15
Alignment explanation
Indices: 7874409--7874438 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7874399 TACATATTTT
7874409 ATTAAATAATAAAAA
1 ATTAAATAATAAAAA
*
7874424 ATTAAGTAATAAAAA
1 ATTAAATAATAAAAA
7874439 TAATTAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
ATTAAATAATAAAAA
Found at i:7875788 original size:3 final size:3
Alignment explanation
Indices: 7875780--7875827 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
7875770 AGGTGTCGTC
7875780 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7875828 CTTTCTTTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7876056 original size:43 final size:43
Alignment explanation
Indices: 7875967--7876063 Score: 131
Period size: 43 Copynumber: 2.3 Consensus size: 43
7875957 GCGTCGTTAA
*
7875967 CTTTAGCGGCGTTTGTGACTTAAGCGCCGCTAAAAGTCAAGCT
1 CTTTAGCGGCGTTTGTGACTTAAGCGCCGCTAAAAGTCAAGAT
* * * * **
7876010 CTTTAGTGGCGTTTGTGACTTAAGCGCCGTTAAAGGTTATTAT
1 CTTTAGCGGCGTTTGTGACTTAAGCGCCGCTAAAAGTCAAGAT
7876053 CTTTAGCGGCG
1 CTTTAGCGGCG
7876064 CTTTACCCAC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.33
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGACTTAAGCGCCGCTAAAAGTCAAGAT
Found at i:7876101 original size:43 final size:42
Alignment explanation
Indices: 7876054--7876302 Score: 189
Period size: 43 Copynumber: 5.8 Consensus size: 42
7876044 GGTTATTATC
*
7876054 TTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGAGCTTGACT
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA-AGCTTGACT
** * * *
7876097 TTTAGCGGCGC--TTCCACTACAAACGTAGCAAAATACCTTGACC
1 TTTAGCGGCGCTTTTCC-C-ACAAACGCCGCTAAA-AGCTTGACT
*** * **
7876140 TTTAGCGGCGCTTTGATCACAAACGCTGCTAAAAGGCATTGGGT
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAA-GC-TTGACT
* *
7876184 TTTAGC-GCGCTTTTCTCACAAACGCCGCGAAAAGACCTTGACT
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAG--CTTGACT
* ** * * * * *
7876227 TTTAGCGACGCTTTTCATAAAAACGCCACTAAATGCATTAACC
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGC-TTGACT
*
7876270 TTTAGCGGCACTTTTCCCACAAACGCCGCTAAA
1 TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
7876303 TTGAACAGCT
Statistics
Matches: 158, Mismatches: 38, Indels: 20
0.73 0.18 0.09
Matches are distributed among these distances:
41 3 0.02
42 4 0.03
43 118 0.75
44 32 0.20
45 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (42 bp):
TTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAAGCTTGACT
Found at i:7876271 original size:130 final size:130
Alignment explanation
Indices: 7876054--7876302 Score: 297
Period size: 130 Copynumber: 1.9 Consensus size: 130
7876044 GGTTATTATC
* * * *
7876054 TTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGAGCTTGACTTTTAGCGGCGCTTCCACTACAA
1 TTTAGCGGCGCTTTACCCACAAACGCCGCAAAAGACCTTGACTTTTAGCGACGCTTCCACTAAAA
* * * * * *
7876119 ACGTAGCAAAATACCTTGACCTTTAGCGGCGCTTTGATCACAAACGCTGCTAAAAGGCATTGGGT
66 ACGCAGCAAAATACATTAACCTTTAGCGGCACTTTGACCACAAACGCCGCTAAAAGGCATTGGGT
* * *
7876184 TTTAGC-GCGCTTTTCTCACAAACGCCGCGAAAAGACCTTGACTTTTAGCGACGCTTTTCA-TAA
1 TTTAGCGGCGCTTTACCCACAAACGCCGC-AAAAGACCTTGACTTTTAGCGACGC-TTCCACTAA
* * **
7876247 AAACGCCA-CTAAATGCATTAACCTTTAGCGGCACTTTTCCCACAAACGCCGCTAAA
64 AAACG-CAGCAAAATACATTAACCTTTAGCGGCACTTTGACCACAAACGCCGCTAAA
7876303 TTGAACAGCT
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
129 20 0.20
130 74 0.75
131 5 0.05
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (130 bp):
TTTAGCGGCGCTTTACCCACAAACGCCGCAAAAGACCTTGACTTTTAGCGACGCTTCCACTAAAA
ACGCAGCAAAATACATTAACCTTTAGCGGCACTTTGACCACAAACGCCGCTAAAAGGCATTGGGT
Found at i:7876955 original size:44 final size:44
Alignment explanation
Indices: 7876906--7876995 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
7876896 CATCAGTGAT
7876906 AATACGGTTATCAATGTCTTCAATATGAACAAAACTATCACTAG
1 AATACGGTTATCAATGTCTTCAATATGAACAAAACTATCACTAG
7876950 AATACGGTTATCAATGTCTTCAATATGAACAAAACTATCACTAG
1 AATACGGTTATCAATGTCTTCAATATGAACAAAACTATCACTAG
7876994 AA
1 AA
7876996 GCAATCGCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.29
Consensus pattern (44 bp):
AATACGGTTATCAATGTCTTCAATATGAACAAAACTATCACTAG
Found at i:7880002 original size:69 final size:70
Alignment explanation
Indices: 7879927--7880114 Score: 310
Period size: 69 Copynumber: 2.7 Consensus size: 70
7879917 TTGAATTATG
*
7879927 TAACATTTACAATTCTTTCTAAAATTATAAAATTTATTATTGAAAATATAGATGTTAATATTTAG
1 TAACATTTACAATTATTTCTAAAATTATAAAATTTATTATTGAAAATATAGATGTTAATATTTAG
7879992 -AAAA
66 AAAAA
7879996 TAACATTTACAATTATTTCTAAAATTATAAAATTTATTATTGAAAATATAGATGTTAATATTTAG
1 TAACATTTACAATTATTTCTAAAATTATAAAATTTATTATTGAAAATATAGATGTTAATATTTAG
7880061 AAAAA
66 AAAAA
* *
7880066 TAACATGTACAATTAGTTT-TAAAAATATAAAATTTATTATT-AACAATAT
1 TAACATTTACAATTA-TTTCTAAAATTATAAAATTTATTATTGAA-AATAT
7880115 TTAAATATAG
Statistics
Matches: 113, Mismatches: 3, Indels: 5
0.93 0.02 0.04
Matches are distributed among these distances:
69 66 0.58
70 44 0.39
71 3 0.03
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.41
Consensus pattern (70 bp):
TAACATTTACAATTATTTCTAAAATTATAAAATTTATTATTGAAAATATAGATGTTAATATTTAG
AAAAA
Found at i:7880045 original size:21 final size:21
Alignment explanation
Indices: 7879947--7880045 Score: 58
Period size: 21 Copynumber: 4.4 Consensus size: 21
7879937 AATTCTTTCT
7879947 AAAATTATAAAATTTATTATTG
1 AAAA-TATAAAATTTATTATTG
* * *
7879969 AAAATAT-AGATGTTAATATTT
1 AAAATATAAAAT-TTATTATTG
* *
7879990 AGAAA-ATAACATTTACAATTATTTCT
1 A-AAATATAAAATTT---ATTA-TT-G
7880016 AAAATTATAAAATTTATTATTG
1 AAAA-TATAAAATTTATTATTG
7880038 AAAATATA
1 AAAATATA
7880046 GATGTTAATA
Statistics
Matches: 60, Mismatches: 7, Indels: 21
0.68 0.08 0.24
Matches are distributed among these distances:
20 3 0.05
21 19 0.32
22 14 0.23
23 2 0.03
24 7 0.12
25 5 0.08
26 2 0.03
27 8 0.13
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (21 bp):
AAAATATAAAATTTATTATTG
Found at i:7881621 original size:12 final size:12
Alignment explanation
Indices: 7881584--7881623 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
7881574 CAAACAGTTT
*
7881584 CAAACTTATGAA
1 CAAAATTATGAA
7881596 CAAAATTA-GTAA
1 CAAAATTATG-AA
7881608 CAAAATTATGAA
1 CAAAATTATGAA
7881620 CAAA
1 CAAA
7881624 CAGTATTACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
11 1 0.04
12 23 0.92
13 1 0.04
ACGTcount: A:0.57, C:0.12, G:0.07, T:0.23
Consensus pattern (12 bp):
CAAAATTATGAA
Found at i:7881634 original size:24 final size:24
Alignment explanation
Indices: 7881573--7881634 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
7881563 ATCTTGTAAT
*
7881573 ACAAACAGT-TT-CAAACTTATGA
1 ACAAACAGTATTACAAAATTATGA
* *
7881595 ACAAA-ATTAGTAACAAAATTATGA
1 ACAAACAGTA-TTACAAAATTATGA
7881619 ACAAACAGTATTACAA
1 ACAAACAGTATTACAA
7881635 GCCTGCAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.06
22 5 0.16
23 1 0.03
24 20 0.65
25 3 0.10
ACGTcount: A:0.53, C:0.15, G:0.08, T:0.24
Consensus pattern (24 bp):
ACAAACAGTATTACAAAATTATGA
Found at i:7881689 original size:12 final size:12
Alignment explanation
Indices: 7881672--7881697 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7881662 ACAGGATAGT
7881672 CAAAATTATGAA
1 CAAAATTATGAA
7881684 CAAAATTATGAA
1 CAAAATTATGAA
7881696 CA
1 CA
7881698 GTTTCAAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.12, G:0.08, T:0.23
Consensus pattern (12 bp):
CAAAATTATGAA
Found at i:7882137 original size:23 final size:24
Alignment explanation
Indices: 7882099--7882155 Score: 89
Period size: 23 Copynumber: 2.4 Consensus size: 24
7882089 TTCTAGAATT
*
7882099 GGGGGATTTTTGGGGGAAAATTTG
1 GGGGGAATTTTGGGGGAAAATTTG
*
7882123 GGGGGAATTTT-GGGGATAATTTG
1 GGGGGAATTTTGGGGGAAAATTTG
7882146 GGGGGAATTT
1 GGGGGAATTT
7882156 CGGCTAAGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 21 0.68
24 10 0.32
ACGTcount: A:0.21, C:0.00, G:0.46, T:0.33
Consensus pattern (24 bp):
GGGGGAATTTTGGGGGAAAATTTG
Found at i:7882154 original size:11 final size:11
Alignment explanation
Indices: 7882107--7882155 Score: 53
Period size: 12 Copynumber: 4.3 Consensus size: 11
7882097 TTGGGGGATT
*
7882107 TTTGGGGGAAAA
1 TTTGGGGG-GAA
7882119 TTTGGGGGGAA
1 TTTGGGGGGAA
**
7882130 TTTTGGGGATAA
1 -TTTGGGGGGAA
7882142 TTTGGGGGGAA
1 TTTGGGGGGAA
7882153 TTT
1 TTT
7882156 CGGCTAAGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
11 14 0.45
12 17 0.55
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35
Consensus pattern (11 bp):
TTTGGGGGGAA
Found at i:7882485 original size:16 final size:17
Alignment explanation
Indices: 7882466--7882501 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7882456 TATTTATTTC
*
7882466 TTAATTTTATC-TTTAA
1 TTAATTGTATCTTTTAA
7882482 TTAATTGTATCTTTTAA
1 TTAATTGTATCTTTTAA
7882499 TTA
1 TTA
7882502 CTAAGTATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.56
17 8 0.44
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.61
Consensus pattern (17 bp):
TTAATTGTATCTTTTAA
Found at i:7883009 original size:21 final size:21
Alignment explanation
Indices: 7882984--7883128 Score: 75
Period size: 21 Copynumber: 6.8 Consensus size: 21
7882974 AGTACCTAAC
*
7882984 CCCTAAATCCCAAACCCCGAA
1 CCCTAAATCCCAAACCCCAAA
* *
7883005 CCCTAAAT-ACATAACCCCTAAGT
1 CCCTAAATCCCA-AACCCC-AA-A
* ** *
7883028 CCCT-AACCCCTAAACCTTAAT
1 CCCTAAATCCC-AAACCCCAAA
*
7883049 CCC-AAACCCCAAAACCCCAAA
1 CCCTAAATCCC-AAACCCCAAA
* *
7883070 CCATAAATCACAAACCCCAAA
1 CCCTAAATCCCAAACCCCAAA
*
7883091 CCCCAAA-CCCTAAACCACC-AA
1 CCCTAAATCCC-AAACC-CCAAA
* *
7883112 CCCCAAATCCCTAACCC
1 CCCTAAATCCCAAACCC
7883129 ATAACCCCTA
Statistics
Matches: 96, Mismatches: 18, Indels: 21
0.71 0.13 0.16
Matches are distributed among these distances:
20 5 0.05
21 66 0.69
22 15 0.16
23 9 0.09
24 1 0.01
ACGTcount: A:0.41, C:0.46, G:0.01, T:0.12
Consensus pattern (21 bp):
CCCTAAATCCCAAACCCCAAA
Found at i:7883057 original size:36 final size:36
Alignment explanation
Indices: 7882980--7883071 Score: 96
Period size: 36 Copynumber: 2.6 Consensus size: 36
7882970 CTTGAGTACC
*
7882980 TAACCCCTAAATCCCAAACCCCGAACCCTAAATACA
1 TAACCCCTAAATCCCAAACCCCGAAACCTAAATACA
* * * * *
7883016 TAACCCCTAAGTCCCTAACCCCTAAACCTTAATCCCA
1 TAACCCCTAAATCCCAAACCCCGAAACCTAAAT-ACA
* *
7883053 -AACCCCAAAACCCCAAACC
1 TAACCCCTAAATCCCAAACC
7883072 ATAAATCACA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
36 43 0.96
37 2 0.04
ACGTcount: A:0.39, C:0.45, G:0.02, T:0.14
Consensus pattern (36 bp):
TAACCCCTAAATCCCAAACCCCGAAACCTAAATACA
Found at i:7883059 original size:7 final size:7
Alignment explanation
Indices: 7883049--7883142 Score: 75
Period size: 7 Copynumber: 13.3 Consensus size: 7
7883039 AAACCTTAAT
7883049 CCCAAAC
1 CCCAAAC
7883056 CCCAAAAC
1 CCC-AAAC
7883064 CCCAAAC
1 CCCAAAC
** *
7883071 CATAAAT
1 CCCAAAC
*
7883078 CACAAAC
1 CCCAAAC
7883085 CCCAAAC
1 CCCAAAC
7883092 CCCAAAC
1 CCCAAAC
*
7883099 CCTAAAC
1 CCCAAAC
7883106 CACC-AAC
1 C-CCAAAC
*
7883113 CCCAAAT
1 CCCAAAC
*
7883120 CCCTAA-
1 CCCAAAC
7883126 CCCATAAC
1 CCCA-AAC
*
7883134 CCCTAAC
1 CCCAAAC
7883141 CC
1 CC
7883143 TAGACCCTAA
Statistics
Matches: 70, Mismatches: 12, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
6 5 0.07
7 54 0.77
8 11 0.16
ACGTcount: A:0.43, C:0.50, G:0.00, T:0.07
Consensus pattern (7 bp):
CCCAAAC
Found at i:7883091 original size:28 final size:28
Alignment explanation
Indices: 7883032--7883132 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
7883022 CTAAGTCCCT
* *
7883032 AACCCCTAAACC-TTAATCCCAAACCCCAA
1 AACCCC-AAACCATAAATCACAAACCCC-A
7883061 AACCCCAAACCATAAATCACAAACCCCA
1 AACCCCAAACCATAAATCACAAACCCCA
* * *
7883089 AACCCCAAACCCTAAACCACCAACCCCA
1 AACCCCAAACCATAAATCACAAACCCCA
* *
7883117 AATCCCTAACCCATAA
1 AA-CCCCAAACCATAA
7883133 CCCCTAACCC
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
28 33 0.53
29 29 0.47
ACGTcount: A:0.45, C:0.46, G:0.00, T:0.10
Consensus pattern (28 bp):
AACCCCAAACCATAAATCACAAACCCCA
Found at i:7883134 original size:21 final size:20
Alignment explanation
Indices: 7883085--7883191 Score: 83
Period size: 20 Copynumber: 5.3 Consensus size: 20
7883075 AATCACAAAC
7883085 CCCA-AACCCCAAACCCTAA
1 CCCATAACCCCAAACCCTAA
* *
7883104 ACCACCAACCCCAAATCCCTAA
1 CCCA-TAACCCCAAA-CCCTAA
*
7883126 CCCATAACCCCTAACCCTAGA
1 CCCATAACCCCAAACCCTA-A
* *
7883147 CCC-TAACCTCAACCCCTAA
1 CCCATAACCCCAAACCCTAA
* ** *
7883166 ACTTTAATCCCAAACCCTAA
1 CCCATAACCCCAAACCCTAA
*
7883186 TCCATA
1 CCCATA
7883192 CCCGGTACTC
Statistics
Matches: 68, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
19 5 0.07
20 33 0.49
21 21 0.31
22 9 0.13
ACGTcount: A:0.37, C:0.47, G:0.01, T:0.15
Consensus pattern (20 bp):
CCCATAACCCCAAACCCTAA
Found at i:7883141 original size:28 final size:28
Alignment explanation
Indices: 7882992--7883142 Score: 103
Period size: 28 Copynumber: 5.3 Consensus size: 28
7882982 ACCCCTAAAT
* *
7882992 CCCAAACCCCGAA-CCCTAAATACATAAC
1 CCCAAACCCCAAACCCCTAAA-CCATAAC
** * * *
7883020 CCCTAAGTCCCTAACCCCTAAACCTTAAT
1 CCC-AAACCCCAAACCCCTAAACCATAAC
*
7883049 CCCAAACCCCAAAACCCC-AAACCATAAAT
1 CCCAAACCCC-AAACCCCTAAACCAT-AAC
* *
7883078 CACAAACCCCAAACCCC-AAACCCTAAAC
1 CCCAAACCCCAAACCCCTAAACCAT-AAC
* *
7883106 CACC-AACCCCAAATCCCTAACCCATAAC
1 C-CCAAACCCCAAACCCCTAAACCATAAC
*
7883134 CCCTAACCC
1 CCCAAACCC
7883143 TAGACCCTAA
Statistics
Matches: 99, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
27 2 0.02
28 52 0.53
29 38 0.38
30 7 0.07
ACGTcount: A:0.40, C:0.47, G:0.01, T:0.11
Consensus pattern (28 bp):
CCCAAACCCCAAACCCCTAAACCATAAC
Found at i:7884638 original size:41 final size:41
Alignment explanation
Indices: 7884588--7884746 Score: 126
Period size: 41 Copynumber: 3.9 Consensus size: 41
7884578 CTGGCGGTTT
* *
7884588 CTCACAAACGCCACTAAAAGACCCACCATTAGCGGCGTATA
1 CTCAAAAACGCCGCTAAAAGACCCACCATTAGCGGCGTATA
* * ** ** * *
7884629 CTCAAAAACGCCGGTAAAAGTCATAGAATTTGCAGCGCTATTA
1 CTCAAAAACGCCGCTAAAAGACCCACCATTAGCGGCG-TA-TA
*
7884672 -T-AAAAACGCCGC-AAAAAACCCTACCATTAGCGGCGTATA
1 CTCAAAAACGCCGCTAAAAGACCC-ACCATTAGCGGCGTATA
* * * * *
7884711 CTCAAAAACGCCGTTAAAGGTCTCAGCATTAGCGGC
1 CTCAAAAACGCCGCTAAAAGACCCACCATTAGCGGC
7884747 ACTAATATTG
Statistics
Matches: 87, Mismatches: 25, Indels: 12
0.70 0.20 0.10
Matches are distributed among these distances:
39 2 0.02
40 8 0.09
41 67 0.77
42 8 0.09
43 2 0.02
ACGTcount: A:0.36, C:0.28, G:0.18, T:0.18
Consensus pattern (41 bp):
CTCAAAAACGCCGCTAAAAGACCCACCATTAGCGGCGTATA
Found at i:7884761 original size:82 final size:82
Alignment explanation
Indices: 7884593--7884769 Score: 223
Period size: 82 Copynumber: 2.2 Consensus size: 82
7884583 GGTTTCTCAC
*
7884593 AAACGCCACTAAAAGACCCACCATTAGCGGCGTATACTCAAAAACGCCGGTAAAAGTCATAGAAT
1 AAACGCCACTAAAAAACCCACCATTAGCGGCGTATACTCAAAAACGCCGGTAAAAGTCATAGAAT
* * *
7884658 TTGCAGCGCTATTATAA
66 TAGCAGCACTAATATAA
* * * *
7884675 AAACGCCGC-AAAAAACCCTACCATTAGCGGCGTATACTCAAAAACGCCGTTAAAGGTC-TCAGC
1 AAACGCCACTAAAAAACCC-ACCATTAGCGGCGTATACTCAAAAACGCCGGTAAAAGTCAT-AGA
* **
7884738 ATTAGCGGCACTAATATTG
64 ATTAGCAGCACTAATATAA
7884757 AAACGCCACTAAA
1 AAACGCCACTAAA
7884770 GCCCTTCGAA
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
81 9 0.11
82 68 0.85
83 3 0.04
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.19
Consensus pattern (82 bp):
AAACGCCACTAAAAAACCCACCATTAGCGGCGTATACTCAAAAACGCCGGTAAAAGTCATAGAAT
TAGCAGCACTAATATAA
Found at i:7888880 original size:51 final size:50
Alignment explanation
Indices: 7888798--7888902 Score: 165
Period size: 51 Copynumber: 2.1 Consensus size: 50
7888788 GTAGCTATAA
* * *
7888798 ATCATTTGTTTATATTAAGTGTCCATGTGTTGTATGTATCAAGATAGGGT
1 ATCATTTGTTTATATTAAGTGTCCATGTGTTGCACGTATAAAGATAGGGT
*
7888848 ATCATTTGTTTATATTTAAGTGTCCATTTGTTGCACGTATAAAGATAGGGT
1 ATCATTTGTTTATA-TTAAGTGTCCATGTGTTGCACGTATAAAGATAGGGT
7888899 ATCA
1 ATCA
7888903 AAACCAGCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 14 0.28
51 36 0.72
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.43
Consensus pattern (50 bp):
ATCATTTGTTTATATTAAGTGTCCATGTGTTGCACGTATAAAGATAGGGT
Found at i:7894821 original size:18 final size:19
Alignment explanation
Indices: 7894799--7894840 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
7894789 TTATTTTTGA
7894799 ATTTTAAAGATTTTTATTT
1 ATTTTAAAGATTTTTATTT
** *
7894818 -TTTTTCATATTTTTATTT
1 ATTTTAAAGATTTTTATTT
7894836 ATTTT
1 ATTTT
7894841 TAAATATATT
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (19 bp):
ATTTTAAAGATTTTTATTT
Found at i:7896354 original size:29 final size:29
Alignment explanation
Indices: 7896322--7896402 Score: 74
Period size: 31 Copynumber: 2.7 Consensus size: 29
7896312 CAAATATTAT
*
7896322 ATTAGACATTTTGAAAGTAGAAATACCAC
1 ATTAGAAATTTTGAAAGTAGAAATACCAC
* ** *
7896351 ATTA-ATAATTTTATTAAAGTTTAGATACCAC
1 ATTAGA-AA-TTT-TGAAAGTAGAAATACCAC
*
7896382 ATTAGATATTTTGAAAGTAGA
1 ATTAGAAATTTTGAAAGTAGA
7896403 GATATTGCAT
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
28 1 0.03
29 12 0.31
30 6 0.15
31 19 0.49
32 1 0.03
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (29 bp):
ATTAGAAATTTTGAAAGTAGAAATACCAC
Found at i:7896715 original size:23 final size:23
Alignment explanation
Indices: 7896672--7896714 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7896662 TTATTTATCT
7896672 TTTTAAAATCTTTCTTATTTTAA
1 TTTTAAAATCTTTCTTATTTTAA
7896695 TTTTAAATAT-TTT-TTATTTT
1 TTTTAAA-ATCTTTCTTATTTT
7896715 TTTTCATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.37
23 10 0.53
24 2 0.11
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTAAAATCTTTCTTATTTTAA
Found at i:7896760 original size:20 final size:19
Alignment explanation
Indices: 7896651--7896760 Score: 67
Period size: 20 Copynumber: 5.4 Consensus size: 19
7896641 TAATATTGAA
* *
7896651 TTTTAGAATTTTTATTTATCT
1 TTTTAAAATATTT-TTTAT-T
* *
7896672 TTTTAAAATCTTTCTTATTT
1 TTTTAAAATATTTTTTA-TT
*
7896692 TAATTTTAAATATTTTTTATT
1 T--TTTAAAATATTTTTTATT
***
7896713 TTTTTTCATAGTTTTTTATT
1 TTTTAAAATA-TTTTTTATT
**
7896733 TTAAAAAATATATTTTTATT
1 TTTTAAAATAT-TTTTTATT
7896753 TTTTAAAA
1 TTTTAAAA
7896761 AAATTATAGT
Statistics
Matches: 69, Mismatches: 15, Indels: 11
0.73 0.16 0.12
Matches are distributed among these distances:
19 8 0.12
20 33 0.48
21 15 0.22
22 13 0.19
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTAAAATATTTTTTATT
Found at i:7900489 original size:22 final size:21
Alignment explanation
Indices: 7900462--7900514 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 21
7900452 CTGGCCCATT
7900462 TTTTAAAAAAATACCAAAAAA-A
1 TTTTAAAAAAATA--AAAAAAGA
7900484 TTTTAAAAAAATAAAAAAAGTA
1 TTTTAAAAAAATAAAAAAAG-A
7900506 TTTTAAAAA
1 TTTTAAAAA
7900515 TATTTTAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.21
22 23 0.79
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (21 bp):
TTTTAAAAAAATAAAAAAAGA
Found at i:7900491 original size:11 final size:11
Alignment explanation
Indices: 7900462--7900525 Score: 51
Period size: 11 Copynumber: 5.8 Consensus size: 11
7900452 CTGGCCCATT
7900462 TTTTAAAAAAA
1 TTTTAAAAAAA
***
7900473 TACCAAAAAAA
1 TTTTAAAAAAA
7900484 TTTTAAAAAAA
1 TTTTAAAAAAA
*
7900495 --TAAAAAAAGTA
1 TTTTAAAAAA--A
*
7900506 TTTTAAAAATA
1 TTTTAAAAAAA
7900517 TTTTAAAAA
1 TTTTAAAAA
7900526 TAAAAAAATT
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
9 7 0.17
11 27 0.68
13 6 0.15
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.31
Consensus pattern (11 bp):
TTTTAAAAAAA
Found at i:7900525 original size:42 final size:42
Alignment explanation
Indices: 7900486--7900574 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
7900476 CAAAAAAATT
7900486 TTAAAAAAA-T-AAAAAAAGTATTTTAAAAATATTTTAAAAA
1 TTAAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAAA
*
7900526 -TAAAAAAATTTAAAAAAAAGTATTTTAAAAGTATTTTAAAAA
1 TTAAAAAAA-TTAAAAAAAAGTATTTTAAAAATATTTTAAAAA
7900568 -TAAAAAA
1 TTAAAAAA
7900575 TAAATATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
39 8 0.18
41 1 0.02
42 36 0.80
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.31
Consensus pattern (42 bp):
TTAAAAAAATTAAAAAAAAGTATTTTAAAAATATTTTAAAAA
Found at i:7900526 original size:11 final size:11
Alignment explanation
Indices: 7900498--7900569 Score: 55
Period size: 11 Copynumber: 6.6 Consensus size: 11
7900488 AAAAAAATAA
7900498 AAAAAGTATTTT
1 AAAAA-TATTTT
7900510 AAAAATATTTT
1 AAAAATATTTT
7900521 AAAAATA----
1 AAAAATATTTT
*
7900528 AAAAA-ATTTAAA
1 AAAAATATTT--T
7900540 AAAAAGTATTTT
1 AAAAA-TATTTT
*
7900552 AAAAGTATTTT
1 AAAAATATTTT
7900563 AAAAATA
1 AAAAATA
7900570 AAAAATAAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 17
0.71 0.04 0.25
Matches are distributed among these distances:
6 1 0.02
7 5 0.10
11 25 0.51
12 14 0.29
14 4 0.08
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:7910692 original size:20 final size:20
Alignment explanation
Indices: 7910667--7910713 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7910657 TAAAATTATT
* *
7910667 GATACCCTCAATAAAGTATC
1 GATACCCTCAACAAAGTATA
* *
7910687 GATACCTTGAACAAAGTATA
1 GATACCCTCAACAAAGTATA
7910707 GATACCC
1 GATACCC
7910714 ATGTTTGGTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.23
Consensus pattern (20 bp):
GATACCCTCAACAAAGTATA
Found at i:7910800 original size:20 final size:20
Alignment explanation
Indices: 7910770--7910824 Score: 92
Period size: 20 Copynumber: 2.7 Consensus size: 20
7910760 ACGCAAAATC
7910770 CAAATGTATCGATACCTTTAA
1 CAAA-GTATCGATACCTTTAA
7910791 CAAAGTATCGATACCTTTAA
1 CAAAGTATCGATACCTTTAA
*
7910811 CAAAGTATCAATAC
1 CAAAGTATCGATAC
7910825 GTTCCCTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 29 0.88
21 4 0.12
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (20 bp):
CAAAGTATCGATACCTTTAA
Found at i:7910945 original size:20 final size:20
Alignment explanation
Indices: 7910900--7910937 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7910890 TTAAGTAAAA
*
7910900 ATAAAAAGTATTGATACCCT
1 ATAAAAAGTATTAATACCCT
*
7910920 AAAAAAAGTATTAATACC
1 ATAAAAAGTATTAATACC
7910938 TTTTAAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.13, G:0.08, T:0.26
Consensus pattern (20 bp):
ATAAAAAGTATTAATACCCT
Found at i:7913260 original size:19 final size:19
Alignment explanation
Indices: 7913236--7913282 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
7913226 TATACTTGTT
7913236 TATTTATTTTAATTAATCA
1 TATTTATTTTAATTAATCA
*
7913255 TATTTAATTTAATTAATCA
1 TATTTATTTTAATTAATCA
*
7913274 TAATTATTT
1 TATTTATTT
7913283 AACCTTAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (19 bp):
TATTTATTTTAATTAATCA
Found at i:7921029 original size:11 final size:13
Alignment explanation
Indices: 7921009--7921040 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7920999 AATAAATTAA
7921009 TAAAATATCAT-T
1 TAAAATATCATAT
7921021 TAAAA-ATCATAT
1 TAAAATATCATAT
7921033 TAAAATAT
1 TAAAATAT
7921041 TAATAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATATCATAT
Found at i:7929508 original size:117 final size:117
Alignment explanation
Indices: 7929302--7929538 Score: 465
Period size: 117 Copynumber: 2.0 Consensus size: 117
7929292 CTCCCAAATA
7929302 AGAACTAAAGCTACCAAGGGACAAGTTCCCTTGAGTACGAATTTCAATGAGTGAAAATAATGGGA
1 AGAACTAAAGCTACCAAGGGACAAGTTCCCTTGAGTACGAATTTCAATGAGTGAAAATAATGGGA
*
7929367 ATGGAGGAAAAGCAAAATTTGTACCGATTTCGCTGAAAAATAATCTTTAATT
66 ATGGAGGAAAAGCAAAATTTGTACCGATTTCACTGAAAAATAATCTTTAATT
7929419 AGAACTAAAGCTACCAAGGGACAAGTTCCCTTGAGTACGAATTTCAATGAGTGAAAATAATGGGA
1 AGAACTAAAGCTACCAAGGGACAAGTTCCCTTGAGTACGAATTTCAATGAGTGAAAATAATGGGA
7929484 ATGGAGGAAAAGCAAAATTTGTACCGATTTCACTGAAAAATAATCTTTAATT
66 ATGGAGGAAAAGCAAAATTTGTACCGATTTCACTGAAAAATAATCTTTAATT
7929536 AGA
1 AGA
7929539 GCAAGAGTTG
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
117 119 1.00
ACGTcount: A:0.41, C:0.14, G:0.20, T:0.25
Consensus pattern (117 bp):
AGAACTAAAGCTACCAAGGGACAAGTTCCCTTGAGTACGAATTTCAATGAGTGAAAATAATGGGA
ATGGAGGAAAAGCAAAATTTGTACCGATTTCACTGAAAAATAATCTTTAATT
Found at i:7934121 original size:20 final size:20
Alignment explanation
Indices: 7934096--7934135 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7934086 AATATTTTCC
*
7934096 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
7934116 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
7934136 TAATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:7934150 original size:34 final size:35
Alignment explanation
Indices: 7934084--7934150 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7934074 CAAACACCAG
* *
7934084 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATAATTTTACAGAAAAGT
*
7934119 AAAACATTTTCCAG-AAATAATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATAATTTTACAGAAAA
7934151 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATAATTTTACAGAAAAGT
Found at i:7934587 original size:8 final size:9
Alignment explanation
Indices: 7934575--7934661 Score: 65
Period size: 8 Copynumber: 9.7 Consensus size: 9
7934565 AAATATATTT
7934575 TAAAAATTA
1 TAAAAATTA
*
7934584 AAAAAATTA
1 TAAAAATTA
7934593 TTAAAAATTA
1 -TAAAAATTA
7934603 TTAAAAA-TA
1 -TAAAAATTA
* *
7934612 GAAAATTTA
1 TAAAAATTA
*
7934621 T-AAATTTAA
1 TAAAAATT-A
*
7934630 AATAAAATTA
1 TA-AAAATTA
7934640 TAAAAA-TA
1 TAAAAATTA
7934648 TAAAAA-TA
1 TAAAAATTA
7934656 TAAAAA
1 TAAAAA
7934662 ACTTAAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
8 26 0.40
9 17 0.26
10 17 0.26
11 5 0.08
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (9 bp):
TAAAAATTA
Found at i:7934598 original size:10 final size:10
Alignment explanation
Indices: 7934574--7934610 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
7934564 AAAATATATT
7934574 TTAAAAATTA
1 TTAAAAATTA
*
7934584 -AAAAAATTA
1 TTAAAAATTA
7934593 TTAAAAATTA
1 TTAAAAATTA
7934603 TTAAAAAT
1 TTAAAAAT
7934611 AGAAAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:7934653 original size:22 final size:22
Alignment explanation
Indices: 7934555--7934655 Score: 63
Period size: 22 Copynumber: 4.7 Consensus size: 22
7934545 AATTACAAAA
* * *
7934555 AAAAATACAAAAAT-ATATTTT
1 AAAAATATAAAAATAAAATTAT
7934576 AAAAAT-T--AAA-AAAATTATT
1 AAAAATATAAAAATAAAATTA-T
7934595 AAAAATTATTAAAAATAGAAAATT-T
1 AAAAA-TA-TAAAAAT--AAAATTAT
* *
7934620 ATAAAT-TTAAAATAAAATTAT
1 AAAAATATAAAAATAAAATTAT
7934641 AAAAATATAAAAATA
1 AAAAATATAAAAATA
7934656 TAAAAAACTT
Statistics
Matches: 61, Mismatches: 7, Indels: 23
0.67 0.08 0.25
Matches are distributed among these distances:
18 7 0.11
19 6 0.10
20 7 0.11
21 12 0.20
22 14 0.23
24 4 0.07
25 5 0.08
27 6 0.10
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (22 bp):
AAAAATATAAAAATAAAATTAT
Found at i:7934681 original size:44 final size:44
Alignment explanation
Indices: 7934583--7934693 Score: 109
Period size: 46 Copynumber: 2.5 Consensus size: 44
7934573 TTTAAAAATT
* * *
7934583 AAAAAAATTATTAAAAATTATTAAAAATAGAAAATTTATAAATTTA
1 AAAAAAATTA-TAAAAA-TATAAAAAATAAAAAACTTATAAATTTA
* *
7934629 AAATAAAATTATAAAAATATAAAAATATAAAAAACTTA-AATTTTC
1 AAA-AAAATTATAAAAATATAAAAA-ATAAAAAACTTATAAATTTA
*
7934674 TAAAAAATT-TAAAAGATATA
1 AAAAAAATTATAAAA-ATATA
7934694 TTAGAAATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
43 5 0.09
44 11 0.20
45 14 0.25
46 19 0.34
47 7 0.12
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (44 bp):
AAAAAAATTATAAAAATATAAAAAATAAAAAACTTATAAATTTA
Found at i:7935098 original size:22 final size:22
Alignment explanation
Indices: 7935060--7935107 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
7935050 GTTTTTAATA
*
7935060 TTTTGTAATTTTAAATAT-TAT
1 TTTTGGAATTTTAAATATGTAT
*
7935081 TTTTGGAATTTTTTAATATGTAT
1 TTTTGGAA-TTTTAAATATGTAT
7935104 TTTT
1 TTTT
7935108 TATTTTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 7 0.30
22 9 0.39
23 7 0.30
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (22 bp):
TTTTGGAATTTTAAATATGTAT
Found at i:7935122 original size:31 final size:32
Alignment explanation
Indices: 7935080--7935144 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
7935070 TTAAATATTA
*
7935080 TTTTTGGAATTTTTTAA-TATGTATTTTT-TAT
1 TTTTTGGAATTTTATAATTAT-TATTTTTCTAT
*
7935111 TTTTTGTAATTTTATAATTATTATTTTTCTAT
1 TTTTTGGAATTTTATAATTATTATTTTTCTAT
7935143 TT
1 TT
7935145 CAATAGTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 22 0.73
32 8 0.27
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (32 bp):
TTTTTGGAATTTTATAATTATTATTTTTCTAT
Found at i:7935210 original size:9 final size:9
Alignment explanation
Indices: 7935182--7935238 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
7935172 TTTTAACTTT
*
7935182 ATATTTTTT
1 ATATTTTTA
*
7935191 CTATTTCTTA
1 ATATTT-TTA
7935201 ATATTTTTA
1 ATATTTTTA
7935210 ATATTTTT-
1 ATATTTTTA
*
7935218 ATAGCTTTTTT
1 ATA--TTTTTA
7935229 ATATTTTTA
1 ATATTTTTA
7935238 A
1 A
7935239 AGTTTTTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
8 3 0.08
9 22 0.55
10 12 0.30
11 3 0.08
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (9 bp):
ATATTTTTA
Found at i:7935226 original size:19 final size:19
Alignment explanation
Indices: 7935204--7935250 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
7935194 TTTCTTAATA
*
7935204 TTTTTAATATTTTTATAGC
1 TTTTTAATATTTTTAAAGC
* *
7935223 TTTTTTATATTTTTAAAGT
1 TTTTTAATATTTTTAAAGC
7935242 TTTTTAATA
1 TTTTTAATA
7935251 ACGTTAGGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (19 bp):
TTTTTAATATTTTTAAAGC
Found at i:7936867 original size:7 final size:7
Alignment explanation
Indices: 7936846--7936879 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
7936836 CTTTTCATTC
*
7936846 TTTTTGT
1 TTTTTAT
*
7936853 TTTATAT
1 TTTTTAT
7936860 TTTTTAT
1 TTTTTAT
7936867 TTTTTAT
1 TTTTTAT
7936874 TTTTTA
1 TTTTTA
7936880 AAAAAAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:7938094 original size:42 final size:41
Alignment explanation
Indices: 7938020--7938374 Score: 419
Period size: 42 Copynumber: 8.4 Consensus size: 41
7938010 ACGTCGCTAA
* *
7938020 CTTTTGCGGCGCTTACATAAAAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTT--AGAAAAAACGCCGCTAAAGATCATGTT
* * *
7938063 TTTTAGCGGCGCTTTAGAAAAAATGCCGCTAAAGATCATGCT
1 CTTTAGCGGCGC-TTAGAAAAAACGCCGCTAAAGATCATGTT
*
7938105 CTTTAGCGGCGCTTAGAATAAAAACGCCCCTAAAGATCATGTT
1 CTTTAGCGGCGCTTAG-A-AAAAACGCCGCTAAAGATCATGTT
*
7938148 CTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGCT
1 CTTTAGCGGCGCTTAG-AAAAAACGCCGCTAAAGATCATGTT
*
7938190 CTTTAGCGGCGCTTAGAAAAAAAACGCCCCTAAAGATCATGTT
1 CTTTAGCGGCGCTTAG--AAAAAACGCCGCTAAAGATCATGTT
7938233 CTTTAGCGGCGCTTAGAAACAAACGCCGCTAAAGATCATGTT
1 CTTTAGCGGCGCTTAGAAA-AAACGCCGCTAAAGATCATGTT
* * * *
7938275 CTTTAGCGGTGCTTTGGAAGAAAACGCCTCTAAA-AGTAATGTT
1 CTTTAGCGGCGC-TTAGAA-AAAACGCCGCTAAAGA-TCATGTT
* **
7938318 CTATAGCGGCGCTTATTCAAAAACGCCGCTAAA-AGT-AGTGTT
1 CTTTAGCGGCGCTTA-GAAAAAACGCCGCTAAAGA-TCA-TGTT
7938360 CTTTAGCGGCGCTTA
1 CTTTAGCGGCGCTTA
7938375 TTTCACAAAC
Statistics
Matches: 277, Mismatches: 25, Indels: 21
0.86 0.08 0.07
Matches are distributed among these distances:
41 8 0.03
42 143 0.52
43 123 0.44
44 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (41 bp):
CTTTAGCGGCGCTTAGAAAAAACGCCGCTAAAGATCATGTT
Found at i:7938128 original size:85 final size:84
Alignment explanation
Indices: 7938020--7938374 Score: 450
Period size: 85 Copynumber: 4.2 Consensus size: 84
7938010 ACGTCGCTAA
* * * *
7938020 CTTTTGCGGCGCTTA-CATAAAAAACGCCGCTAAAGATCATGTTTTTTAGCGGCGCTTTAGAAAA
1 CTTTAGCGGCGCTTAGAAT-AAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGC-TTAGAAAA
*
7938084 AATGCCGCTAAAGATCATGCT
64 AACGCCGCTAAAGATCATGCT
7938105 CTTTAGCGGCGCTTAGAATAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAA
1 CTTTAGCGGCGCTTAGAATAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTAG-AAAAA
7938170 ACGCCGCTAAAGATCATGCT
65 ACGCCGCTAAAGATCATGCT
*
7938190 CTTTAGCGGCGCTTAGAAAAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAACAA
1 CTTTAGCGGCGCTTAGAATAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAA-AA
*
7938255 ACGCCGCTAAAGATCATGTT
65 ACGCCGCTAAAGATCATGCT
* * * * * * **
7938275 CTTTAGCGGTGCTTTGGAA-GAAAACGCCTCTAAA-AGTAATGTTCTATAGCGGCGCTTATTCAA
1 CTTTAGCGGCGC-TTAGAATAAAAACGCCCCTAAAGA-TCATGTTCTTTAGCGGCGCTTA-GAAA
*
7938338 AAACGCCGCTAAA-AGT-AGTGTT
63 AAACGCCGCTAAAGA-TCA-TGCT
7938360 CTTTAGCGGCGCTTA
1 CTTTAGCGGCGCTTA
7938375 TTTCACAAAC
Statistics
Matches: 245, Mismatches: 17, Indels: 17
0.88 0.06 0.06
Matches are distributed among these distances:
84 12 0.05
85 224 0.91
86 9 0.04
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (84 bp):
CTTTAGCGGCGCTTAGAATAAAAACGCCCCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAA
CGCCGCTAAAGATCATGCT
Found at i:7938828 original size:21 final size:21
Alignment explanation
Indices: 7938804--7938872 Score: 102
Period size: 21 Copynumber: 3.3 Consensus size: 21
7938794 GCTTCTATTG
7938804 CTGCTTCTCTCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
7938825 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* * *
7938846 CTGCTTCCCTCGCTGCCGCGT
1 CTGCTTCTCTCGCTGCAGCCT
7938867 CTGCTT
1 CTGCTT
7938873 TAAGTTGCTG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.03, C:0.42, G:0.20, T:0.35
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:7944403 original size:9 final size:9
Alignment explanation
Indices: 7944389--7944476 Score: 56
Period size: 9 Copynumber: 9.8 Consensus size: 9
7944379 TGTATGCCCC
7944389 ATGTAAGTA
1 ATGTAAGTA
7944398 ATGTAAGCT-
1 ATGTAAG-TA
7944407 ATGTAAGTA
1 ATGTAAGTA
7944416 ATGTAAG-A
1 ATGTAAGTA
* * *
7944424 TATTTAATTT
1 -ATGTAAGTA
*
7944434 ATGTAAGTT
1 ATGTAAGTA
7944443 ATGTAAG-A
1 ATGTAAGTA
* * *
7944451 TATTTAATTT
1 -ATGTAAGTA
*
7944461 ATGTAAGTT
1 ATGTAAGTA
7944470 ATGTAAG
1 ATGTAAG
7944477 ATATTTAATT
Statistics
Matches: 62, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
8 2 0.03
9 59 0.95
10 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.18, T:0.42
Consensus pattern (9 bp):
ATGTAAGTA
Found at i:7944410 original size:18 final size:18
Alignment explanation
Indices: 7944389--7944774 Score: 176
Period size: 18 Copynumber: 21.4 Consensus size: 18
7944379 TGTATGCCCC
*
7944389 ATGTAAGTAATGTAAGCT
1 ATGTAAGTAATGTAAGTT
*
7944407 ATGTAAGTAATGTAAGAT
1 ATGTAAGTAATGTAAGTT
* * *
7944425 ATTTAATTTATGTAAGTT
1 ATGTAAGTAATGTAAGTT
* *
7944443 ATGTAAG-ATATTTAATTT
1 ATGTAAGTA-ATGTAAGTT
* *
7944461 ATGTAAGTTATGTAAGAT
1 ATGTAAGTAATGTAAGTT
* * * *
7944479 ATTTAATTTATGTAAATT
1 ATGTAAGTAATGTAAGTT
* *
7944497 ATGTAAG-ATATTTAATTT
1 ATGTAAGTA-ATGTAAGTT
* * *
7944515 ACGTAAGTTATGCAAGTT
1 ATGTAAGTAATGTAAGTT
* * *
7944533 ATTTAATTTATGTAAGTT
1 ATGTAAGTAATGTAAGTT
* *
7944551 ATGTAAG-ATATTTAATTT
1 ATGTAAGTA-ATGTAAGTT
* *
7944569 ATGTAAGTTATGTAAGAT
1 ATGTAAGTAATGTAAGTT
* * * *
7944587 ATTTAATTTATGTAAATT
1 ATGTAAGTAATGTAAGTT
* *
7944605 ATGTAAG-ATATTTAATTT
1 ATGTAAGTA-ATGTAAGTT
* *
7944623 ATGTAAGTTATGCAAGTT
1 ATGTAAGTAATGTAAGTT
* * * *
7944641 ATTTAATTTACT-TAATTT
1 ATGTAA-GTAATGTAAGTT
* *
7944659 ATGTAAGTTATGTAAGAT
1 ATGTAAGTAATGTAAGTT
* * *
7944677 ATTTAATTTATGTAAGTT
1 ATGTAAGTAATGTAAGTT
* *
7944695 ATGTAAGATACT-TAATTT
1 ATGTAAG-TAATGTAAGTT
* * *
7944713 ATGTAAGTTATTTAATTT
1 ATGTAAGTAATGTAAGTT
* *
7944731 ACT-TAATTTATGTAAGTT
1 A-TGTAAGTAATGTAAGTT
* * *
7944749 ATTTAATTAACT-TAATTT
1 ATGTAAGTAA-TGTAAGTT
7944767 ATGTAAGT
1 ATGTAAGT
7944775 TATTTAATTT
Statistics
Matches: 270, Mismatches: 83, Indels: 30
0.70 0.22 0.08
Matches are distributed among these distances:
17 5 0.02
18 259 0.96
19 6 0.02
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.47
Consensus pattern (18 bp):
ATGTAAGTAATGTAAGTT
Found at i:7944790 original size:9 final size:9
Alignment explanation
Indices: 7944703--7944792 Score: 69
Period size: 9 Copynumber: 10.0 Consensus size: 9
7944693 TTATGTAAGA
7944703 TACTTAATT
1 TACTTAATT
*
7944712 TA-TGTAAGT
1 TACT-TAATT
*
7944721 TATTTAATT
1 TACTTAATT
7944730 TACTTAATT
1 TACTTAATT
*
7944739 TA-TGTAAGT
1 TACT-TAATT
*
7944748 TATTTAATT
1 TACTTAATT
*
7944757 AACTTAATT
1 TACTTAATT
*
7944766 TA-TGTAAGT
1 TACT-TAATT
*
7944775 TATTTAATT
1 TACTTAATT
7944784 TACTTAATT
1 TACTTAATT
7944793 ATGATTTTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
8 3 0.05
9 58 0.91
10 3 0.05
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.54
Consensus pattern (9 bp):
TACTTAATT
Found at i:7944792 original size:27 final size:27
Alignment explanation
Indices: 7944406--7944777 Score: 512
Period size: 27 Copynumber: 13.4 Consensus size: 27
7944396 TAATGTAAGC
*
7944406 TATGTAAGTAATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
7944433 TATGTAAGTTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
7944460 TATGTAAGTTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
*
7944487 TATGTAAATTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
* * *
7944514 TACGTAAGTTATGCAAGTTATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
7944541 TATGTAAGTTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
7944568 TATGTAAGTTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
*
7944595 TATGTAAATTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
*
7944622 TATGTAAGTTATGCAAGTTATTTAATTTACTTAATT
1 TATGTAAGTTATGTAAG--A--T-A--T--TTAATT
7944658 TATGTAAGTTATGTAAGATATTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
*
7944685 TATGTAAGTTATGTAAGATACTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
* ** *
7944712 TATGTAAGTTATTTAATTTACTTAATT
1 TATGTAAGTTATGTAAGATATTTAATT
* * *
7944739 TATGTAAGTTATTTAA-TTAACTTAATT
1 TATGTAAGTTATGTAAGAT-ATTTAATT
7944766 TATGTAAGTTAT
1 TATGTAAGTTAT
7944778 TTAATTTACT
Statistics
Matches: 318, Mismatches: 17, Indels: 20
0.90 0.05 0.06
Matches are distributed among these distances:
26 2 0.01
27 286 0.90
29 2 0.01
31 2 0.01
32 2 0.01
34 2 0.01
36 22 0.07
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (27 bp):
TATGTAAGTTATGTAAGATATTTAATT
Found at i:7945390 original size:13 final size:13
Alignment explanation
Indices: 7945368--7945404 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
7945358 CTCCATGGAA
7945368 ACAT-TTTTAATT
1 ACATATTTTAATT
7945380 ACATATTTTAATT
1 ACATATTTTAATT
7945393 ACATATTTTAAT
1 ACATATTTTAAT
7945405 AAACATTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
ACATATTTTAATT
Found at i:7948083 original size:21 final size:20
Alignment explanation
Indices: 7948055--7948093 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
7948045 AACACATATT
*
7948055 AACCTTAAACCTTAAACCCC
1 AACCTTAAACCATAAACCCC
7948075 AACCATTAAACCATAAACC
1 AACC-TTAAACCATAAACC
7948094 ATAGACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (20 bp):
AACCTTAAACCATAAACCCC
Found at i:7948646 original size:228 final size:227
Alignment explanation
Indices: 7948153--7948672 Score: 500
Period size: 228 Copynumber: 2.3 Consensus size: 227
7948143 ATGCATGGTT
* * *
7948153 AAGACCAAAACTCTGCGTTTTGGTTAATACATTTTCCGGTGCTTATCAAAAAGCGCCGCTAATAC
1 AAGACC-AAACTCTGCGTTTTGGTTAAGACATTTTGCGGCGCTTATCAAAAAGCGCCGCTAATAC
* ** **
7948218 CATGCTTTAGCGGCGATTTCTCGTGAACGCCACTAATTCCAGTATACATCAAGACTTAAACGCTG
65 CATGATTTAGCGGCGATTTCTC-TGAACGCCACTAATAACAGTATACATCAAGACAAAAACGCTG
* * * *
7948283 CGTTTTTGTTACTATTTTTGGCGGCGCTTATAAAAAGCGCCGCAAATAATATACTTTAGCGGCGG
129 CATTTTTGTTACAAATTTTGGCGGCGCTTATAAAAAGCGCCGCAAATAATATACATTAGCGGCGG
*
7948348 TCTACAAAAAGCGCCACTAATTCTAATATAGCTC
194 TCTACAAAAAGCGCCACTAATTCTAATATACCTC
* * * * * * *
7948382 ATGTA-AAAACTCAGCGTTTTGG-TGAGTATATTTTGCGGCGCTTCTGC-ACAAGCGCCGCTAAT
1 AAG-ACCAAACTCTGCGTTTTGGTTAAG-ACATTTTGCGGCGCTTAT-CAAAAAGCGCCGCTAAT
* * * * *
7948444 ACTATGATTTAGCGGCG-TTTCT-TTATATGCGCCACTAGTAACTGTATACATCGAGACAAAAAC
63 ACCATGATTTAGCGGCGATTTCTCTGA-A--CGCCACTAATAACAGTATACATCAAGACAAAAAC
* * * * *
7948507 GTTGCATTTTTGTTGTCAAATTTT-GCGGCGCTTATACAAAAGCGCCGCTAATAGTGTACATTAG
125 GCTGCATTTTTGTT-ACAAATTTTGGCGGCGCTTATA-AAAAGCGCCGCAAATAATATACATTAG
* ***** *
7948571 TGGCGTGT-T-CGCTCTGCGCCACTAATTCTAGTATACCTC
188 CGGCG-GTCTACAAAAAGCGCCACTAATTCTAATATACCTC
** * *
7948610 AAGACCAAACTCTGCGTTTTGGTTAAGAGGTTTTGCGGCGCTTACCACAACA-CGCCGCTAATA
1 AAGACCAAACTCTGCGTTTTGGTTAAGACATTTTGCGGCGCTTATCA-AAAAGCGCCGCTAATA
7948673 TCATACTTTA
Statistics
Matches: 231, Mismatches: 47, Indels: 27
0.76 0.15 0.09
Matches are distributed among these distances:
225 2 0.01
226 1 0.00
227 9 0.04
228 174 0.75
229 42 0.18
230 3 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (227 bp):
AAGACCAAACTCTGCGTTTTGGTTAAGACATTTTGCGGCGCTTATCAAAAAGCGCCGCTAATACC
ATGATTTAGCGGCGATTTCTCTGAACGCCACTAATAACAGTATACATCAAGACAAAAACGCTGCA
TTTTTGTTACAAATTTTGGCGGCGCTTATAAAAAGCGCCGCAAATAATATACATTAGCGGCGGTC
TACAAAAAGCGCCACTAATTCTAATATACCTC
Found at i:7950121 original size:21 final size:18
Alignment explanation
Indices: 7950089--7950128 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
7950079 ATTTAGATGC
7950089 ATAATGGAATAATAAACATG
1 ATAATGGAATAA-AAA-ATG
7950109 ATAATGTGAATAAAAAATG
1 ATAATG-GAATAAAAAATG
7950128 A
1 A
7950129 ACAAAACGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.57, C:0.03, G:0.15, T:0.25
Consensus pattern (18 bp):
ATAATGGAATAAAAAATG
Found at i:7952006 original size:98 final size:98
Alignment explanation
Indices: 7951812--7952583 Score: 1202
Period size: 98 Copynumber: 7.9 Consensus size: 98
7951802 CGAGGAAATA
* * * *
7951812 AGATTCGCCGTTGCAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAGTAAGATTCGCCGTTGTGG
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCC-AGAAGTAAGATTCGCCGTTGTGG
* * *
7951877 CTTCAATCTTTTAAATTGTAATGTCGAGGAAGTG
65 CTTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
* * * * * *
7951911 AGATTCGCCGTTGTAGCTTCAATCTGTTCCACTGCATCGCCAAAAGTAAGATTCACCGTTATGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
7951976 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
* *
7952009 AGATTCGCCGTTGTAGCTTCAATCTGCTCTGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
* *
7952074 TTCGATCTTTTAATTTGCAATGTAGGGGAAGTG
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
** * * *
7952107 AGATTCGCTGTTGTAGCTTCAATCTGCTCTACTACATTGCCAGAAGTAAGATTCACCGTTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
*
7952172 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTA
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
* * * *
7952205 AGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCATCGCCAGAAGTAAGATTCACCGTTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
* *
7952270 TTCGATATTTTAAATTGCAATATCGGGGAAGTG
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
*
7952303 AGATTCGCTGTTGTAGCTTCAATCTGCTCTGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
* * *
7952368 TTCAATCCTTTAAATTGCAATGTCAGGGAAGTG
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
*
7952401 AGATTCGCTGTTGTAGCTTCAATTTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
7952466 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
66 TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
* * *
7952499 AGATTCACTGTTGTAGCTTCAATCTACTCCGCTGCATCGCCAGAAGTAAGATTCGCCGCTGTGGC
1 AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
7952564 TTCGATCTTTTAAATTGCAA
66 TTCGATCTTTTAAATTGCAA
7952584 ACTATGGTTT
Statistics
Matches: 621, Mismatches: 52, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
98 582 0.94
99 39 0.06
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.33
Consensus pattern (98 bp):
AGATTCGCTGTTGTAGCTTCAATCTGCTCCGCTGCATCGCCAGAAGTAAGATTCGCCGTTGTGGC
TTCGATCTTTTAAATTGCAATGTCGGGGAAGTG
Found at i:7952566 original size:48 final size:48
Alignment explanation
Indices: 7951810--7952571 Score: 351
Period size: 50 Copynumber: 15.6 Consensus size: 48
7951800 GTCGAGGAAA
* * * *
7951810 TAAGATTCGCCGTTGCAGCTTCAATCTGTTCCGCTGCATCGCCTGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGCATCGCC-AGAAG
* ** * ** * *
7951859 TAAGATTCGCCGTTGTGGCTTCAATCTTTTAAATTGTAAT-GTCGAGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTG-CATCG-CCA-GAAG
* * *
7951909 TGAGATTCGCCGTTGTAGCTTCAATCTGTTCCA-CTGCATCGCCAAAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCT-CAGCTGCATCGCCAGAAG
* * * * ** * ** **
7951957 TAAGATTCACCGTTATGGCTTCGATCTTTTAAATTGCAAT-GTCGGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGC-ATCG-C-CAGAAG
* *
7952007 TGAGATTCGCCGTTGTAGCTTCAATCTGCTCTGCTGCATCGCCAGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGCATCGCCAGAAG
* * ** * ** *
7952055 TAAGATTCGCCGTTGTGGCTTCGATCTTTTAATTTGCAAT-G-TAGGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGC-ATCGCCA---GAAG
* * * *
7952105 TGAGATTCGCTGTTGTAGCTTCAATCTGCTCTA-CTACATTGCCAGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTC-AGCTGCATCGCCAGAAG
* * * ** * ** **
7952153 TAAGATTCACCGTTGTGGCTTCGATCTTTTAAATTGCAAT-GTCGGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGC-ATCG-C-CAGAAG
* * *
7952203 TAAGATTCGCTGTTGTAGCTTTAATCTGTTCCA-CTGCATCGCCAGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCT-CAGCTGCATCGCCAGAAG
* * * * ** * ** **
7952251 TAAGATTCACCGTTGTGGCTTCGATATTTTAAATTGCAATATCG-GGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGC---ATCGCCAGAAG
* * *
7952301 TGAGATTCGCTGTTGTAGCTTCAATCTGCTCTGCTGCATCGCCAGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGCATCGCCAGAAG
* * * ** *
7952349 TAAGATTCGCCGTTGTGGCTTCAATCCT-TTAAATTGCAAT-GTCAGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAAT-CTGCTCAGCTGC-ATCGCCA--GAAG
* * * *
7952399 TGAGATTCGCTGTTGTAGCTTCAATTTGCTCCGCTGCATCGCCAGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGCATCGCCAGAAG
* * ** * ** **
7952447 TAAGATTCGCCGTTGTGGCTTCGATCTTTTAAATTGCAAT-GTCGGGGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGC-ATCG-C-CAGAAG
* * * * *
7952497 TGAGATTCACTGTTGTAGCTTCAATCTACTCCGCTGCATCGCCAGAAG
1 TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGCATCGCCAGAAG
* * *
7952545 TAAGATTCGCCGCTGTGGCTTCGATCT
1 TAAGATTCGCCGTTGTAGCTTCAATCT
7952572 TTTAAATTGC
Statistics
Matches: 515, Mismatches: 160, Indels: 77
0.68 0.21 0.10
Matches are distributed among these distances:
47 8 0.02
48 213 0.41
49 63 0.12
50 223 0.43
51 8 0.02
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (48 bp):
TAAGATTCGCCGTTGTAGCTTCAATCTGCTCAGCTGCATCGCCAGAAG
Found at i:7964714 original size:21 final size:18
Alignment explanation
Indices: 7964682--7964721 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
7964672 ATTTAGATGC
7964682 ATAATGGAATAATAAACATG
1 ATAATGGAATAA-AAA-ATG
7964702 ATAATGTGAATAAAAAATG
1 ATAATG-GAATAAAAAATG
7964721 A
1 A
7964722 ACAAAACGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.57, C:0.03, G:0.15, T:0.25
Consensus pattern (18 bp):
ATAATGGAATAAAAAATG
Found at i:7965034 original size:32 final size:30
Alignment explanation
Indices: 7964997--7965055 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
7964987 ATGTATCTAC
7964997 AAATTAAAAAATGCATATA-TATATATGTAGAT
1 AAATTAAAAAAT--ATA-AGTATATATGTAGAT
*
7965029 AAATTATAAAATATAAGTATATATGTA
1 AAATTAAAAAATATAAGTATATATGTA
7965056 TATATTAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 1 0.04
30 13 0.52
32 11 0.44
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.36
Consensus pattern (30 bp):
AAATTAAAAAATATAAGTATATATGTAGAT
Found at i:7968252 original size:20 final size:19
Alignment explanation
Indices: 7968227--7968291 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
7968217 AAAATAATCA
7968227 AAAATAATTTTCAAAAATTC
1 AAAATAATTTT-AAAAATTC
* *
7968247 AAAATAATTTTTAAAATTA
1 AAAATAATTTTAAAAATTC
7968266 AAAAT-ATTTATAAAAAATTC
1 AAAATAATTT-T-AAAAATTC
7968286 TAAAAT
1 -AAAAT
7968292 TTATATTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
18 4 0.11
19 12 0.32
20 17 0.45
21 5 0.13
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATAATTTTAAAAATTC
Found at i:7968281 original size:19 final size:19
Alignment explanation
Indices: 7968226--7968281 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
7968216 CAAAATAATC
7968226 AAAAATAATTTTCAAAAATT
1 AAAAATAATTTT-AAAAATT
* *
7968246 CAAAATAATTTTTAAAATT
1 AAAAATAATTTTAAAAATT
7968265 AAAAAT-ATTTATAAAAA
1 AAAAATAATTT-TAAAAA
7968282 ATTCTAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
18 4 0.13
19 16 0.52
20 11 0.35
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATAATTTTAAAAATT
Found at i:7968340 original size:43 final size:41
Alignment explanation
Indices: 7968232--7968340 Score: 113
Period size: 44 Copynumber: 2.7 Consensus size: 41
7968222 AATCAAAAAT
7968232 AATTTTC--AAAAATTC--AAAATA-ATTTTTAAAATTAAA
1 AATTTTCAAAAAAATTCTAAAAATATATTTTTAAAATTAAA
* *
7968268 AATATTT-ATAAAAAATTCTAAAATTTATATTTTTAAAATTTTTAA
1 AAT-TTTCA-AAAAAATTCTAAAA-ATATATTTTTAAAA--TTAAA
7968313 AATTTTCAAAAAAATTCTAAAAATATAT
1 AATTTTCAAAAAAATTCTAAAAATATAT
7968341 ATAAAGAAAG
Statistics
Matches: 59, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
36 3 0.05
37 3 0.05
39 8 0.14
41 3 0.05
42 2 0.03
43 15 0.25
44 17 0.29
45 8 0.14
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (41 bp):
AATTTTCAAAAAAATTCTAAAAATATATTTTTAAAATTAAA
Found at i:7969802 original size:31 final size:31
Alignment explanation
Indices: 7969749--7969813 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
7969739 TACAATTTGA
** * *
7969749 TCACTAAACTATTTGAACGTTTTCATTTAAG
1 TCACTAAACTATTCAAAAGTTTTCATGTAAG
* *
7969780 TCACTAAATTATTCAAAAGTTTTTATGTAAG
1 TCACTAAACTATTCAAAAGTTTTCATGTAAG
7969811 TCA
1 TCA
7969814 ATGAGTGGTT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (31 bp):
TCACTAAACTATTCAAAAGTTTTCATGTAAG
Found at i:7973078 original size:41 final size:40
Alignment explanation
Indices: 7973033--7973134 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 40
7973023 TGATTCAGTA
7973033 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * *
7973074 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
* *
7973115 CACCAGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
7973135 AGCGCTAAGC
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 2 0.04
41 50 0.93
42 2 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:7974743 original size:13 final size:13
Alignment explanation
Indices: 7974725--7974749 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7974715 CAATCAAATG
7974725 CACACAAAATAAA
1 CACACAAAATAAA
7974738 CACACAAAATAA
1 CACACAAAATAA
7974750 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:7978846 original size:40 final size:39
Alignment explanation
Indices: 7978771--7978911 Score: 124
Period size: 40 Copynumber: 3.6 Consensus size: 39
7978761 AAACACACCA
* **
7978771 ATTTGGCACCCAGTGCCTCATCGGATAATTTGAAGTAAT
1 ATTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAAT
* * *
7978810 ACTTTGACACCCAGTGTCTCATCGGCTAAACCGAAGTAA-
1 A-TTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAAT
* * **
7978849 A-TTGGCACCTAGTGCCTCATCAAATATATCCGAAGTAAT
1 ATTTGACACCCAGTGCCTCATCGGATA-ATCCGAAGTAAT
** *
7978888 AATTTGACACTTAGTGTCTCATCG
1 -ATTTGACACCCAGTGCCTCATCG
7978912 ACTCGAAGCT
Statistics
Matches: 80, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
37 19 0.24
38 10 0.12
39 2 0.03
40 32 0.40
41 17 0.21
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (39 bp):
ATTTGACACCCAGTGCCTCATCGGATAATCCGAAGTAAT
Found at i:7978909 original size:41 final size:40
Alignment explanation
Indices: 7978802--7978910 Score: 107
Period size: 37 Copynumber: 2.8 Consensus size: 40
7978792 CGGATAATTT
* * ***
7978802 GAAGTAATACTTTGACACCCAGTGTCTCATCGGCTAAACC
1 GAAGTAATAATTTGACACCTAGTGTCTCATCAAATAAACC
* * *
7978842 GAAGT-A-AA-TTGGCACCTAGTGCCTCATCAAATATATCC
1 GAAGTAATAATTTGACACCTAGTGTCTCATCAAATA-AACC
*
7978880 GAAGTAATAATTTGACACTTAGTGTCTCATC
1 GAAGTAATAATTTGACACCTAGTGTCTCATC
7978911 GACTCGAAGC
Statistics
Matches: 54, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
37 19 0.35
38 9 0.17
39 2 0.04
40 7 0.13
41 17 0.31
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (40 bp):
GAAGTAATAATTTGACACCTAGTGTCTCATCAAATAAACC
Found at i:7981235 original size:17 final size:17
Alignment explanation
Indices: 7981188--7981250 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 17
7981178 AACCAATTCC
*
7981188 AAATTAAAAATTAATAT
1 AAATAAAAAATTAATAT
* *
7981205 -AA-ACATAA-TAATAT
1 AAATAAAAAATTAATAT
* *
7981219 TAATAAAAATTTAATAT
1 AAATAAAAAATTAATAT
7981236 AAATAAAAAATTAAT
1 AAATAAAAAATTAAT
7981251 CAATAAAAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
14 6 0.17
15 5 0.14
16 5 0.14
17 19 0.54
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATAAAAAATTAATAT
Found at i:7981306 original size:38 final size:36
Alignment explanation
Indices: 7981248--7981333 Score: 91
Period size: 36 Copynumber: 2.3 Consensus size: 36
7981238 ATAAAAAATT
7981248 AATCAATAAAAAAAACTAAAAGTAAAACCTAAATTCCCA
1 AATC-ATAAAAAAAACTAAAAGT--AACCTAAATTCCCA
* * ** *
7981287 AATCATAAAAGAAATTAAAAGTTCCCTAAATTCTCA
1 AATCATAAAAAAAACTAAAAGTAACCTAAATTCCCA
*
7981323 AATCATTAAAA
1 AATCATAAAAA
7981334 TTATTATTTT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
36 20 0.50
38 16 0.40
39 4 0.10
ACGTcount: A:0.57, C:0.16, G:0.03, T:0.23
Consensus pattern (36 bp):
AATCATAAAAAAAACTAAAAGTAACCTAAATTCCCA
Found at i:7982197 original size:22 final size:23
Alignment explanation
Indices: 7982171--7982221 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
7982161 TTCCTTTTCC
7982171 CTCTCAATCCCCAACTCCCTTAAT
1 CTCT-AATCCCCAACTCCCTTAAT
** * *
7982195 CTCTTCTCCCCAACTCCTTTAAC
1 CTCTAATCCCCAACTCCCTTAAT
7982218 CTCT
1 CTCT
7982222 TAACTCTTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (23 bp):
CTCTAATCCCCAACTCCCTTAAT
Found at i:7982204 original size:23 final size:23
Alignment explanation
Indices: 7982178--7982222 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7982168 TCCCTCTCAA
*
7982178 TCCCCAACTCCCTTAATCTCTTC
1 TCCCCAACTCCCTTAACCTCTTC
*
7982201 TCCCCAACTCCTTTAACCTCTT
1 TCCCCAACTCCCTTAACCTCTT
7982223 AACTCTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.18, C:0.47, G:0.00, T:0.36
Consensus pattern (23 bp):
TCCCCAACTCCCTTAACCTCTTC
Found at i:7984111 original size:17 final size:17
Alignment explanation
Indices: 7984089--7984131 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7984079 TCTACCTCCG
7984089 TTATATTTTAAA-ATTTT
1 TTATATTTTAAATA-TTT
* *
7984106 TTATATATTATATATTT
1 TTATATTTTAAATATTT
7984123 TTATATTTT
1 TTATATTTT
7984132 TAATTAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTATATTTTAAATATTT
Found at i:7984146 original size:26 final size:26
Alignment explanation
Indices: 7984090--7984142 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
7984080 CTACCTCCGT
* *
7984090 TATATTTTAAAATTTTTTATATATTA
1 TATATTTTAAAATTTTTAATATAATA
* *
7984116 TATATTTTTATATTTTTAAT-TAATA
1 TATATTTTAAAATTTTTAATATAATA
7984141 TA
1 TA
7984143 ATATATGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
TATATTTTAAAATTTTTAATATAATA
Found at i:7985483 original size:2 final size:2
Alignment explanation
Indices: 7985476--7985501 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7985466 GCTGTTTGAT
7985476 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7985502 GCTTGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7987939 original size:34 final size:34
Alignment explanation
Indices: 7987896--7987967 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
7987886 CATAAGTACA
*
7987896 TCCATTAACCACTTTAAATCATACCAAAGATACC
1 TCCATTAACCACTTTAAATCATACCAAACATACC
7987930 TCCATTAACCACTTTAAATCATACCAAACATACC
1 TCCATTAACCACTTTAAATCATACCAAACATACC
7987964 TCCA
1 TCCA
7987968 AAATATACCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.40, C:0.32, G:0.01, T:0.26
Consensus pattern (34 bp):
TCCATTAACCACTTTAAATCATACCAAACATACC
Found at i:7987977 original size:13 final size:13
Alignment explanation
Indices: 7987959--7987988 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
7987949 CATACCAAAC
7987959 ATACCTCCAAAAT
1 ATACCTCCAAAAT
7987972 ATACCTCCAAAAT
1 ATACCTCCAAAAT
7987985 ATAC
1 ATAC
7987989 ATGAGAATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (13 bp):
ATACCTCCAAAAT
Found at i:7988278 original size:25 final size:25
Alignment explanation
Indices: 7988246--7988305 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
7988236 AAGTGAGAAA
*
7988246 CGGTAAGCTCTTTCAAGCTG-AATAT
1 CGGTAAGCTCTTACAAGCTGTAA-AT
* *
7988271 CGGTAAGCTCTTACGATCTGTAAAT
1 CGGTAAGCTCTTACAAGCTGTAAAT
7988296 CGGTAAGCTC
1 CGGTAAGCTC
7988306 ATACGAACTG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 29 0.94
26 2 0.06
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (25 bp):
CGGTAAGCTCTTACAAGCTGTAAAT
Found at i:7988310 original size:25 final size:25
Alignment explanation
Indices: 7988269--7988316 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
7988259 CAAGCTGAAT
* *
7988269 ATCGGTAAGCTCTTACGATCTGTAA
1 ATCGGTAAGCTCATACGAACTGTAA
7988294 ATCGGTAAGCTCATACGAACTGT
1 ATCGGTAAGCTCATACGAACTGT
7988317 GGTGAGTTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
ATCGGTAAGCTCATACGAACTGTAA
Found at i:7990614 original size:23 final size:22
Alignment explanation
Indices: 7990574--7990673 Score: 58
Period size: 23 Copynumber: 4.2 Consensus size: 22
7990564 TGTCATTTTC
*
7990574 GCTCTTTCGAGCCATGATCGGTAA
1 GCTCTATCGAG-C-TGATCGGTAA
7990598 GCTC-ATTCTGAGCTGATAAACGGTAA
1 GCTCTA-TC-GAGCTGAT---CGGTAA
*
7990624 GCTCTATCGAGCTGAAACGGTAA
1 GCTCTATCGAGCTG-ATCGGTAA
** * *
7990647 GCTCCGTAGAGCTGAAACGGTAA
1 GCTCTATCGAGCTG-ATCGGTAA
7990670 GCTC
1 GCTC
7990674 ATACAAGCTG
Statistics
Matches: 64, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
23 34 0.53
24 7 0.11
25 9 0.14
26 13 0.20
27 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (22 bp):
GCTCTATCGAGCTGATCGGTAA
Found at i:7990682 original size:23 final size:23
Alignment explanation
Indices: 7990592--7990683 Score: 98
Period size: 23 Copynumber: 3.9 Consensus size: 23
7990582 GAGCCATGAT
*
7990592 CGGTAAGCTCATTCTGAGCTGATAAA
1 CGGTAAGCTCATAC-GAGCTG--AAA
7990618 CGGTAAGCTC-TATCGAGCTGAAA
1 CGGTAAGCTCATA-CGAGCTGAAA
*
7990641 CGGTAAGCTCCGTA-GAGCTGAAA
1 CGGTAAGCT-CATACGAGCTGAAA
*
7990664 CGGTAAGCTCATACAAGCTG
1 CGGTAAGCTCATACGAGCTG
7990684 TGGTGAGTCT
Statistics
Matches: 59, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
22 3 0.05
23 35 0.59
24 1 0.02
25 9 0.15
26 11 0.19
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (23 bp):
CGGTAAGCTCATACGAGCTGAAA
Found at i:7997562 original size:7 final size:7
Alignment explanation
Indices: 7997550--7997597 Score: 96
Period size: 7 Copynumber: 6.9 Consensus size: 7
7997540 TTAAAAACTT
7997550 AATTAAC
1 AATTAAC
7997557 AATTAAC
1 AATTAAC
7997564 AATTAAC
1 AATTAAC
7997571 AATTAAC
1 AATTAAC
7997578 AATTAAC
1 AATTAAC
7997585 AATTAAC
1 AATTAAC
7997592 AATTAA
1 AATTAA
7997598 TGTCCATAGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.29
Consensus pattern (7 bp):
AATTAAC
Found at i:8000697 original size:106 final size:105
Alignment explanation
Indices: 8000511--8000712 Score: 271
Period size: 106 Copynumber: 1.9 Consensus size: 105
8000501 ATTGGAACAA
* * * * ** *
8000511 GGGAGGTCTGTCTTGAGACTTAGTCTCCAGACTTGAGAAGTTATGTTTTGAGGCATGGATTTCAA
1 GGGAGGTCTGTCTTGAGACTGAGTCTCCAAACTTGAGAAGTCATGTCTTGAGAAATAGATTTCAA
*
8000576 TGTTCAAGACATGTCAACATTGAAGCTAAAATAGCGAAACG
66 TGTTCAAGACATGTCAACATCGAAGC-AAAATAGCGAAACG
* *
8000617 GGGAGGTTTGTCTTGAGACTGAGTCTCTAAACTTGAGAAGTCATGTCTTGAGAAATAGATTTCAA
1 GGGAGGTCTGTCTTGAGACTGAGTCTCCAAACTTGAGAAGTCATGTCTTGAGAAATAGATTTCAA
* *
8000682 TGCTT-AATACGTGTCAACATCGAAGCAAAAT
66 TG-TTCAAGACATGTCAACATCGAAGCAAAAT
8000713 TTCTAGAAAT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
105 5 0.06
106 76 0.92
107 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (105 bp):
GGGAGGTCTGTCTTGAGACTGAGTCTCCAAACTTGAGAAGTCATGTCTTGAGAAATAGATTTCAA
TGTTCAAGACATGTCAACATCGAAGCAAAATAGCGAAACG
Found at i:8002953 original size:27 final size:26
Alignment explanation
Indices: 8002923--8002973 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
8002913 ATTATGACTA
*
8002923 AATTAGCCAAATATGCTGATTTTTTTT
1 AATTAGCCAAATAGGCT-ATTTTTTTT
*
8002950 AATTAGTCAAATAGGCTATTTTTT
1 AATTAGCCAAATAGGCTATTTTTT
8002974 AAAAAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (26 bp):
AATTAGCCAAATAGGCTATTTTTTTT
Found at i:8006207 original size:33 final size:33
Alignment explanation
Indices: 8006138--8006234 Score: 106
Period size: 33 Copynumber: 2.8 Consensus size: 33
8006128 CTATACCCAT
* * *
8006138 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
8006175 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
8006208 CTATGCCGAATGCA-ACATATATATATA
1 CTATGCCGAATGCATACACATAAATATA
8006235 CATATCTATC
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 11 0.20
33 22 0.40
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:8006493 original size:41 final size:41
Alignment explanation
Indices: 8006448--8006685 Score: 390
Period size: 41 Copynumber: 5.8 Consensus size: 41
8006438 ACCGGCTCTT
*
8006448 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8006489 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8006530 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8006571 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
8006612 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
8006653 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
8006686 TAACGATAAA
Statistics
Matches: 188, Mismatches: 5, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 179 0.95
42 2 0.01
43 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:8011897 original size:33 final size:33
Alignment explanation
Indices: 8011828--8011925 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
8011818 CTATACCCAT
* * *
8011828 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
8011865 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
8011898 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
8011926 ATACATATCT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:8012187 original size:41 final size:41
Alignment explanation
Indices: 8012142--8012338 Score: 308
Period size: 41 Copynumber: 4.8 Consensus size: 41
8012132 ACCGGCTCTT
*
8012142 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8012183 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8012224 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
8012265 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
8012306 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
8012339 TAACGATAAA
Statistics
Matches: 147, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 138 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:8021413 original size:33 final size:33
Alignment explanation
Indices: 8021316--8021412 Score: 99
Period size: 37 Copynumber: 2.9 Consensus size: 33
8021306 CTATACCCAT
* * *
8021316 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
8021353 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
8021386 CTATG-CGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
8021413 ACATATCTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
31 12 0.22
32 8 0.15
33 13 0.24
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:8021672 original size:41 final size:41
Alignment explanation
Indices: 8021627--8021863 Score: 381
Period size: 41 Copynumber: 5.8 Consensus size: 41
8021617 ACCGGCTCTT
*
8021627 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8021668 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8021709 AGCCTGCTAGACTTAT-GTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8021749 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
8021790 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
8021831 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
8021864 TAACGATAAA
Statistics
Matches: 186, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
39 2 0.01
40 42 0.23
41 137 0.74
42 2 0.01
43 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:8021751 original size:81 final size:82
Alignment explanation
Indices: 8021627--8021863 Score: 381
Period size: 81 Copynumber: 2.9 Consensus size: 82
8021617 ACCGGCTCTT
*
8021627 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTAAGCCTGCTAGACTTATAGTCTGAA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTAAGCCTGCTAGACTTATAGTCTGAA
8021692 ATGTGTCACCGGCATTA
66 ATGTGTCACCGGCATTA
8021709 AGCCTGCTAGACTTAT-GTCTGAAATGTGTCACCGGCATTAAGCCTGCTAGACTTATAGTCTGAA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTAAGCCTGCTAGACTTATAGTCTGAA
8021773 ATGTGTCACCGGCATTA
66 ATGTGTCACCGGCATTA
* * *
8021790 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTAAGCCTGCTAGACGTAAAGTCTG
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTAAGCCTGCTAGACTTATAGTCTG
* *
8021853 AATTATGTCAC
64 AAATGTGTCAC
8021864 TAACGATAAA
Statistics
Matches: 146, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
81 80 0.55
82 61 0.42
83 2 0.01
84 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (82 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTAAGCCTGCTAGACTTATAGTCTGAA
ATGTGTCACCGGCATTA
Found at i:8027072 original size:33 final size:33
Alignment explanation
Indices: 8027003--8027100 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
8026993 CTATACCCAT
* * *
8027003 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
8027040 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
8027073 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
8027101 ACATATCTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:8027360 original size:41 final size:41
Alignment explanation
Indices: 8027315--8027511 Score: 308
Period size: 41 Copynumber: 4.8 Consensus size: 41
8027305 ACCGGCTCTT
*
8027315 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8027356 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8027397 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
8027438 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
8027479 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
8027512 TAACGATAAA
Statistics
Matches: 147, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 138 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:8033678 original size:15 final size:17
Alignment explanation
Indices: 8033660--8033691 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
8033650 CTGAAACATC
8033660 AAAAGAA-AAAG-TAAG
1 AAAAGAAGAAAGCTAAG
8033675 AAAAGAAGAAAGCTAAG
1 AAAAGAAGAAAGCTAAG
8033692 TTCGACCATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.69, C:0.03, G:0.22, T:0.06
Consensus pattern (17 bp):
AAAAGAAGAAAGCTAAG
Found at i:8034455 original size:28 final size:28
Alignment explanation
Indices: 8034415--8034513 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 28
8034405 TGACTTTCGA
8034415 CACTAAGTGTGCGAATTTAATTGTAAAG
1 CACTAAGTGTGCGAATTTAATTGTAAAG
* * *
8034443 CACTAAGTGTGCGAGTTTAATGGCAAAG
1 CACTAAGTGTGCGAATTTAATTGTAAAG
* * * **
8034471 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAATTTAATTGTAAAG
*
8034499 CACTAAGTGTACGAA
1 CACTAAGTGTGCGAA
8034514 CTTATTAAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (28 bp):
CACTAAGTGTGCGAATTTAATTGTAAAG
Found at i:8035301 original size:70 final size:70
Alignment explanation
Indices: 8035214--8035801 Score: 765
Period size: 70 Copynumber: 8.3 Consensus size: 70
8035204 ATGTTCATGT
* *
8035214 AATTTTTATGCTTAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATTTGC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGC
8035279 TGTCC
66 TGTCC
* * * *
8035284 AATTTTGATG-TAAAAATGCTG-CTCAATTTGGTATATATATATGCTGCCCAAATTGTTGCATAT
1 AATTTTTATGCT-AAAATGCTGTC-CAATTT-GT-TGTATTTATGCTGCCCAAATTGTTGTATAT
*
8035347 ATGCTGTCA
62 ATGCTGTCC
* *
8035356 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGGTGCATATATGC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGC
*
8035421 TGTCA
66 TGTCC
* * * *
8035426 AATTTTTATGCTAAAATGTTGTCCAATTTGTTGTATTTATGCTACCCGAATTGTTGGATATATGC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGC
8035491 TGTCC
66 TGTCC
* * *
8035496 AATTTTTATGCTTAAATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGC
8035561 TGTCC
66 TGTCC
* ** *
8035566 AATTTTTATGCTTAAATGCTACCCAATTTGTTGTATTTATGCTGCCCAATTTGTTGTATATATGC
1 AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGC
8035631 TGTCC
66 TGTCC
* * * * *
8035636 AATTTTGATG-TAAAAATGCTG-CTCAATTTGGTATATATATAGGCTGCCCAAATTATTGTATAT
1 AATTTTTATGCT-AAAATGCTGTC-CAATTT-GT-TGTATTTATGCTGCCCAAATTGTTGTATAT
8035699 ATGCTGTCC
62 ATGCTGTCC
* * *
8035708 AATTTTTATGCTAAAATGCTG-CTCAATTTGATGTATATATGTTGCCCAAATTGTTGTATATATG
1 AATTTTTATGCTAAAATGCTGTC-CAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATG
8035772 CTGTCC
65 CTGTCC
*
8035778 AATTTTTGGTG-TGAAAATGCTGTC
1 AATTTTT-ATGCT-AAAATGCTGTC
8035802 TAGTTTGATA
Statistics
Matches: 463, Mismatches: 41, Indels: 26
0.87 0.08 0.05
Matches are distributed among these distances:
69 4 0.01
70 319 0.69
71 18 0.04
72 119 0.26
73 3 0.01
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (70 bp):
AATTTTTATGCTAAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATATGC
TGTCC
Found at i:8035568 original size:282 final size:282
Alignment explanation
Indices: 8035214--8035784 Score: 803
Period size: 282 Copynumber: 2.0 Consensus size: 282
8035204 ATGTTCATGT
* * *
8035214 AATTTTTATGCTTAAATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATATTTGC
1 AATTTTTATGCTTAAATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
* *
8035279 TGTCCAATTTTGATG-TAAAAATGCTGCTCAATTTGGTATATATATATGCTGCCCAAATTGTTGC
66 TGTCCAATTTTGATGCT-AAAATGCTACCCAATTT-GT-TATATATATGCTGCCCAAATTGTTGC
* * * *
8035343 ATATATGCTGTCAAATTTTTATGCT-AAAATGCTG-TCCAATTT-GT-TGTATTTATGCTGCCCA
128 ATATATGCTGTCAAATTTTGATG-TAAAAATGCTGCT-CAATTTGGTATATATATAGGCTGCCCA
* * * *
8035404 AATTGGTGCATATATGCTGTCAAATTTTTATGCTAAAATGTTG-TCCAATTTGTTGTATTTATGC
191 AATTAGTGCATATATGCTGTCAAATTTTTATGCTAAAATGCTGCT-CAATTTGATGTATATATGC
*
8035468 TACCCGAATTGTTGGATATATGCTGTCC
255 TACCCAAATTGTTGGATATATGCTGTCC
8035496 AATTTTTATGCTTAAATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
1 AATTTTTATGCTTAAATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
* * * * * *
8035561 TGTCCAATTTTTATGCTTAAATGCTACCCAATTTGTTGTATTTATGCTGCCCAATTTGTTGTATA
66 TGTCCAATTTTGATGCTAAAATGCTACCCAATTTGTTATATATATGCTGCCCAAATTGTTGCATA
*
8035626 TATGCTGTCCAATTTTGATGTAAAAATGCTGCTCAATTTGGTATATATATAGGCTGCCCAAATTA
131 TATGCTGTCAAATTTTGATGTAAAAATGCTGCTCAATTTGGTATATATATAGGCTGCCCAAATTA
* * * * *
8035691 TTGTATATATGCTGTCCAATTTTTATGCTAAAATGCTGCTCAATTTGATGTATATATGTTGCCCA
196 GTGCATATATGCTGTCAAATTTTTATGCTAAAATGCTGCTCAATTTGATGTATATATGCTACCCA
*
8035756 AATTGTTGTATATATGCTGTCC
261 AATTGTTGGATATATGCTGTCC
8035778 AATTTTT
1 AATTTTT
8035785 GGTGTGAAAA
Statistics
Matches: 256, Mismatches: 27, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
279 1 0.00
280 58 0.23
281 5 0.02
282 190 0.74
283 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.43
Consensus pattern (282 bp):
AATTTTTATGCTTAAATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATATATGC
TGTCCAATTTTGATGCTAAAATGCTACCCAATTTGTTATATATATGCTGCCCAAATTGTTGCATA
TATGCTGTCAAATTTTGATGTAAAAATGCTGCTCAATTTGGTATATATATAGGCTGCCCAAATTA
GTGCATATATGCTGTCAAATTTTTATGCTAAAATGCTGCTCAATTTGATGTATATATGCTACCCA
AATTGTTGGATATATGCTGTCC
Found at i:8035745 original size:47 final size:46
Alignment explanation
Indices: 8035229--8035782 Score: 315
Period size: 47 Copynumber: 11.8 Consensus size: 46
8035219 TTATGCTTAA
* * * *
8035229 ATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATATATGCTGCTCAATTTGATGTATAT
* * * * *
8035275 TTGCTGTCCAATTTTGATGTAAAAATGCTGCTCAATTTGGTATATATAT
1 ATGCTGTCCAA-TTTGTTGTATATATGCTGCTCAATTT-G-ATGTATAT
* * * * *
8035324 ATGCTGCCCAAATTGTTGCATATATGCTG-TCAAATTTTTATGCTA-AA
1 ATGCTGTCCAATTTGTTGTATATATGCTGCTC-AA-TTTGATG-TATAT
* * * * *
8035371 ATGCTGTCCAATTTGTTGTATTTATGCTGCCCAAATTGGTGCATAT
1 ATGCTGTCCAATTTGTTGTATATATGCTGCTCAATTTGATGTATAT
* * * * * *
8035417 ATGCTGTCAAATTTTTATGCTA-AAATGTTG-TCCAATTTGTTGTATTT
1 ATGCTGTCCAATTTGT-TG-TATATATGCTGCT-CAATTTGATGTATAT
** * * *
8035464 ATGCTACCCGAA-TTGTTGGATATATGCTG-TCCAATTTTTATGCT-TAA
1 ATGCTGTCC-AATTTGTTGTATATATGCTGCT-CAA-TTTGATG-TATAT
* * * * * *
8035511 ATGCTGCCCAATTTGTTGTATTTATGCTGCCCAAATTGTTGCATAT
1 ATGCTGTCCAATTTGTTGTATATATGCTGCTCAATTTGATGTATAT
* * * * * *
8035557 ATGCTGTCCAATTTTTATGCT-TAAATGCTACCCAATTTGTTGTATTT
1 ATGCTGTCCAATTTGT-TG-TATATATGCTGCTCAATTTGATGTATAT
* * *
8035604 ATGCTGCCCAATTTGTTGTATATATGCTG-TCCAATTTTGATGTAAAA
1 ATGCTGTCCAATTTGTTGTATATATGCTGCT-CAA-TTTGATGTATAT
* * * *
8035651 ATGCTG-CTCAATTTGGTATATATATAGGCTGCCCAAATT-ATTGTATAT
1 ATGCTGTC-CAATTT-GT-TGTATATATGCTGCTCAATTTGA-TGTATAT
* *
8035699 ATGCTGTCCAATTTTTATGCTA-AAATGCTGCTCAATTTGATGTATAT
1 ATGCTGTCCAATTTGT-TG-TATATATGCTGCTCAATTTGATGTATAT
* * *
8035746 ATGTTGCCCAAATTGTTGTATATATGCTG-TCCAATTT
1 ATGCTGTCCAATTTGTTGTATATATGCTGCT-CAATTT
8035783 TTGGTGTGAA
Statistics
Matches: 382, Mismatches: 93, Indels: 66
0.71 0.17 0.12
Matches are distributed among these distances:
45 6 0.02
46 92 0.24
47 202 0.53
48 49 0.13
49 33 0.09
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.43
Consensus pattern (46 bp):
ATGCTGTCCAATTTGTTGTATATATGCTGCTCAATTTGATGTATAT
Done.