Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 27 of 211
Found at i:8041827 original size:40 final size:40
Alignment explanation
Indices: 8041767--8041874 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 40
8041757 TTTTTAGTGA
*
8041767 TGTTTGTATAAAAAACGCCACTAAAAATCAAGCATTAGCGG
1 TGTTTTTA-AAAAAACGCCACTAAAAATCAAGCATTAGCGG
* ** ** *
8041808 TGTTTTTAAAAAAATGCCACTAAGGATTGAGTATTAGCGG
1 TGTTTTTAAAAAAACGCCACTAAAAATCAAGCATTAGCGG
* *
8041848 CGCTTTTT-AAAAAACGCCGCTAAAAAT
1 TG-TTTTTAAAAAAACGCCACTAAAAAT
8041875 GAGCAATATT
Statistics
Matches: 54, Mismatches: 12, Indels: 3
0.78 0.17 0.04
Matches are distributed among these distances:
40 42 0.78
41 12 0.22
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (40 bp):
TGTTTTTAAAAAAACGCCACTAAAAATCAAGCATTAGCGG
Found at i:8042021 original size:41 final size:41
Alignment explanation
Indices: 8041952--8042151 Score: 303
Period size: 41 Copynumber: 4.9 Consensus size: 41
8041942 TTTTGAGGCA
* * *
8041952 TTAGCGGCGTTTTTGAAA-AAGCGTCGCTAATACTCAGGGTT
1 TTAGCGGCGTTTTT-AAAGAAGCGCCGCTAATGCTCAGGGCT
* *
8041993 TTAGCGGCATTTTTAAAGAAGCACCGCTAATGCTCAGGGCT
1 TTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCAGGGCT
*
8042034 TTAGCGGCGTTTTTAAAGAAGTGCCGCTAATGCTCAGGGCT
1 TTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCAGGGCT
* *
8042075 TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCAGGGAT
1 TTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCAGGGCT
*
8042116 TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTCA
1 TTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCA
8042152 AATTTATCAT
Statistics
Matches: 147, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 3 0.02
41 144 0.98
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (41 bp):
TTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCAGGGCT
Found at i:8042778 original size:7 final size:7
Alignment explanation
Indices: 8042753--8042805 Score: 63
Period size: 7 Copynumber: 7.6 Consensus size: 7
8042743 CAGTTATAAA
8042753 GGTT-GG
1 GGTTAGG
*
8042759 GGTTTAAG
1 GG-TTAGG
8042767 GGTTAGG
1 GGTTAGG
8042774 GGTTAGG
1 GGTTAGG
8042781 GGTTAGG
1 GGTTAGG
8042788 GGTTAGG
1 GGTTAGG
* *
8042795 TGTTAAG
1 GGTTAGG
8042802 GGTT
1 GGTT
8042806 TACGATTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
6 2 0.05
7 35 0.88
8 3 0.08
ACGTcount: A:0.15, C:0.00, G:0.51, T:0.34
Consensus pattern (7 bp):
GGTTAGG
Found at i:8043576 original size:185 final size:184
Alignment explanation
Indices: 8043265--8043615 Score: 657
Period size: 185 Copynumber: 1.9 Consensus size: 184
8043255 CGAACATCTA
8043265 GCATAATAGTTATATTTTAGTTAGGAATAAATATCTCTAATAAAATGGAGATTAAATAGGAAAAG
1 GCATAATAGTTATATTTTAGTTAGGAATAAATATCTCTAATAAAATGGAGATTAAATAGGAAAAG
8043330 AATAATATAAAATCGTGATGAACATTTCAATATTTAATAGAAATCGTGATTAACATTGGATAATT
66 AATAATATAAAATCGTGATGAACATTTCAATATTTAATAGAAATCGTGATTAACATTGGATAATT
8043395 CTAACATAATAATTAATTGTAGCCATTTAATCATTTGTTTTCTTATTAAAATAT
131 CTAACATAATAATTAATTGTAGCCATTTAATCATTTGTTTTCTTATTAAAATAT
*
8043449 GCATAATAGTTATATTTTAGTTAGGAATAAATATCTCTAAATAAAATGGAGATTAAATCGGAAAA
1 GCATAATAGTTATATTTTAGTTAGGAATAAATATCTCT-AATAAAATGGAGATTAAATAGGAAAA
* *
8043514 GAATAATATAAAATCGTGATTAACATTTCAATATTTAATAGAAATCGTGATTAATATTGGATAAT
65 GAATAATATAAAATCGTGATGAACATTTCAATATTTAATAGAAATCGTGATTAACATTGGATAAT
*
8043579 TCTAACTTAATAATTAATTGTAGCCATTTAATCATTT
130 TCTAACATAATAATTAATTGTAGCCATTTAATCATTT
8043616 AAACATTTCA
Statistics
Matches: 162, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
184 38 0.23
185 124 0.77
ACGTcount: A:0.43, C:0.08, G:0.12, T:0.37
Consensus pattern (184 bp):
GCATAATAGTTATATTTTAGTTAGGAATAAATATCTCTAATAAAATGGAGATTAAATAGGAAAAG
AATAATATAAAATCGTGATGAACATTTCAATATTTAATAGAAATCGTGATTAACATTGGATAATT
CTAACATAATAATTAATTGTAGCCATTTAATCATTTGTTTTCTTATTAAAATAT
Found at i:8043744 original size:22 final size:24
Alignment explanation
Indices: 8043713--8043759 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
8043703 ATCACTTAAC
*
8043713 TAAAAAA-TTTTAGTAGA-CAAAA
1 TAAAAAATTTTTAGCAGAGCAAAA
*
8043735 TAAAATATTTTTAGCAGAGCAAAA
1 TAAAAAATTTTTAGCAGAGCAAAA
8043759 T
1 T
8043760 GACGTCGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 9 0.43
24 6 0.29
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.30
Consensus pattern (24 bp):
TAAAAAATTTTTAGCAGAGCAAAA
Found at i:8044725 original size:31 final size:31
Alignment explanation
Indices: 8044687--8044748 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
8044677 TATGTGATAG
8044687 AGTCTCGTTTGTGTTTGTTTTTAACCCAGGT
1 AGTCTCGTTTGTGTTTGTTTTTAACCCAGGT
8044718 AGTCTCGTTTGTGTTTGTTTTTAACCCAGGT
1 AGTCTCGTTTGTGTTTGTTTTTAACCCAGGT
8044749 GCTTTTATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.13, C:0.16, G:0.23, T:0.48
Consensus pattern (31 bp):
AGTCTCGTTTGTGTTTGTTTTTAACCCAGGT
Found at i:8048040 original size:5 final size:5
Alignment explanation
Indices: 8048032--8048073 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
8048022 AAAATAAAAC
8048032 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT AT
8048074 TTATCATAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:8048212 original size:43 final size:43
Alignment explanation
Indices: 8048127--8048354 Score: 298
Period size: 43 Copynumber: 5.3 Consensus size: 43
8048117 AAATTATGTT
* *
8048127 TTTAGCAGCGTTTGTGATAAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGT-AAAAGCGCCGCTAAAGGTCTTGGTC
* *
8048171 TTTAGCGGCGTTTGTGGTAAAAGTGCCGCTAAAGGTTTTGGTC
1 TTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCTTGGTC
* *
8048214 TTTAGCGGCGTTTGTGGGATAAGCGCCGCTAAA-GTCTTGGTC
1 TTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCTTGGTC
* ** *
8048256 TTTAGCGGCGTTTGTGGAAAAAGCATCGCTAAAGGACTTGGTC
1 TTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCTTGGTC
* * * *
8048299 TTTAACGGCGTTTGTGAG-AAAAGCGCCACTAAAGGTCCTAGTC
1 TTTAGCGGCGTTTGTG-GTAAAAGCGCCGCTAAAGGTCTTGGTC
8048342 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
8048355 TTTTTGGCGC
Statistics
Matches: 161, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
42 37 0.23
43 107 0.66
44 17 0.11
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:8048266 original size:85 final size:86
Alignment explanation
Indices: 8048134--8048354 Score: 309
Period size: 85 Copynumber: 2.6 Consensus size: 86
8048124 GTTTTTAGCA
* * **
8048134 GCGTTTGTGATAAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGTAAAAGTGCCG
1 GCGTTTGTGA-GAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGAAAAAGCACCG
** *
8048199 CTAAAGGTTTTGGTCTTTAGCG
65 CTAAAGGACTTGGTCTTTAACG
* * *
8048221 GCGTTTGTGGGATAAGCGCCGCTAAA-GTCTTGGTCTTTAGCGGCGTTTGTGGAAAAAGCATCGC
1 GCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGAAAAAGCACCGC
8048285 TAAAGGACTTGGTCTTTAACG
66 TAAAGGACTTGGTCTTTAACG
* * *
8048306 GCGTTTGTGAGAAAAGCGCCACTAAAGGTCCTAGTCTTTAGCGGCGTTT
1 GCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
8048355 TTTTTGGCGC
Statistics
Matches: 118, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
85 75 0.64
86 34 0.29
87 9 0.08
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (86 bp):
GCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGAAAAAGCACCGC
TAAAGGACTTGGTCTTTAACG
Found at i:8051784 original size:22 final size:20
Alignment explanation
Indices: 8051749--8051790 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 20
8051739 ACTTCAGTTT
8051749 TAAAAAAAATAGAAATAAAA
1 TAAAAAAAATAGAAATAAAA
8051769 TAAAACAATAATAGAAATAAAA
1 TAAAA-AA-AATAGAAATAAAA
8051791 AAAGATTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 2 0.10
22 13 0.65
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (20 bp):
TAAAAAAAATAGAAATAAAA
Found at i:8052518 original size:40 final size:40
Alignment explanation
Indices: 8052459--8052904 Score: 428
Period size: 40 Copynumber: 10.8 Consensus size: 40
8052449 GTGGTTTTAG
* *
8052459 TCTGCTCCACTACTACTTAGGGAGATAAGACTAGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* *
8052499 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTCATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * * **
8052539 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTT
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGCGA
*
8052580 TCGTCCGCTCCACTATTGCTTAGGGAGATAAGACTTGATGCGA
1 TC-T--GCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* ** *
8052623 TCTGCTCCACTACTACTTAGGGAGATAAGATCTGGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGATGCGA
* * *
8052667 TCTGCTCCACTACTGCTTAGGGAGATGAGACTTCATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * * *
8052707 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CTTGATGC---GA
* ** *
8052751 TCTGCTCCACTACTGCTTAAGGAGATAAGATCTGGTTTCTTTCG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-C----TTGATGCGA
* * * *
8052795 TCTGTTCCACTGCTGCTTAGGGAGATAAGACTTCATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
* * *
8052835 TCTGCTCCATTACTGCTTAGGGAGATAAGACTTCATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
8052875 TCTGCTCCACTACTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
8052905 TCTGTAATCT
Statistics
Matches: 339, Mismatches: 48, Indels: 38
0.80 0.11 0.09
Matches are distributed among these distances:
39 10 0.03
40 186 0.55
41 9 0.03
42 2 0.01
43 9 0.03
44 113 0.33
45 5 0.01
48 5 0.01
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
Found at i:8052615 original size:84 final size:84
Alignment explanation
Indices: 8052459--8052908 Score: 575
Period size: 84 Copynumber: 5.4 Consensus size: 84
8052449 GTGGTTTTAG
* * * *
8052459 TCTGCTCCACTACTACTTAGGGAGATAAGA-CTAG----ATGCGATCTGCTCCACTACTGCTTAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCG-TCTGCTCCACTACTGCTTAG
8052519 GGAGATAAGACTTCATGTGA
65 GGAGATAAGACTTCATGTGA
* *
8052539 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCCGCTCCACTATTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
* *
8052604 GAGATAAGACTTGATGCGA
66 GAGATAAGACTTCATGTGA
*
8052623 TCTGCTCCACTACTACTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
*
8052688 GAGATGAGACTTCATGTGA
66 GAGATAAGACTTCATGTGA
* *
8052707 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCATCTGCTCCACTACTGCTTAAG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
*
8052772 GAGATAAGATCTGGTTTC-TTTCG-
66 GAGATAAGA-C----TTCATGT-GA
* * * *
8052795 TCTGTTCCACTGCTGCTTAGGGAGATAAGA-C----TTCATGT-GATCTGCTCCATTACTGCTTA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTC-TTTCG-TCTGCTCCACTACTGCTTA
8052854 GGGAGATAAGACTTCATGTGA
64 GGGAGATAAGACTTCATGTGA
8052875 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
1 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
8052909 TAATCTTCAA
Statistics
Matches: 324, Mismatches: 28, Indels: 33
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.01
80 59 0.18
81 4 0.01
83 4 0.01
84 214 0.66
85 4 0.01
87 1 0.00
88 30 0.09
89 4 0.01
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (84 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGG
GAGATAAGACTTCATGTGA
Found at i:8053080 original size:44 final size:44
Alignment explanation
Indices: 8053030--8053252 Score: 155
Period size: 44 Copynumber: 5.2 Consensus size: 44
8053020 CAGTACAGGA
*
8053030 AGGCAAGATCTGTTGTCTTCAACCAACTCTGCTACAACCGAGAG
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTACAACCGAGAG
* * * * * *
8053074 AGGCAAGA--T-TTGTGTTCGATCTGCT-TCGCTGTCAA-TGCAG-G
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCT-GCT-ACAACCG-AGAG
*
8053115 AAGGCAAGATCTGTTGTCTTCAACCAACTCTGCTACAACCGAGAG
1 -AGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTACAACCGAGAG
* * * * * * *
8053160 AGGCAA-A-GT-TTGTGTTCGATCTGCT-TCGCTGTCAA-TGCAG-G
1 AGGCAAGATCTGTTGTCTTCAACCAGCTCT-GCT-ACAACCG-AGAG
8053201 AAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTACAACCGAGAG
1 -AGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTACAACCGAGAG
8053246 AGGCAAG
1 AGGCAAG
8053253 GTTTGTGTCT
Statistics
Matches: 130, Mismatches: 29, Indels: 40
0.65 0.15 0.20
Matches are distributed among these distances:
40 2 0.02
41 32 0.25
42 26 0.20
43 2 0.02
44 33 0.25
45 33 0.25
46 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (44 bp):
AGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTACAACCGAGAG
Found at i:8053124 original size:42 final size:43
Alignment explanation
Indices: 8053074--8053209 Score: 113
Period size: 42 Copynumber: 3.2 Consensus size: 43
8053064 CAACCGAGAG
8053074 AGGCAAGA-TTTGTGTTCGATCTGCTTCGCTGTCAATGCAGGA
1 AGGCAAGACTTTGTGTTCGATCTGCTTCGCTGTCAATGCAGGA
* * * ** * *
8053116 AGGCAAGATCTGTTGTCTTCAACCAAC-TCTGCT-ACAA--CCGAGA
1 AGGCAAGA-CT-TTGTGTTCGATCTGCTTC-GCTGTCAATGCAG-GA
*
8053159 GAGGCAA-AGTTTGTGTTCGATCTGCTTCGCTGTCAATGCAGGA
1 -AGGCAAGACTTTGTGTTCGATCTGCTTCGCTGTCAATGCAGGA
8053202 AGGCAAGA
1 AGGCAAGA
8053210 TCTGTTGTCT
Statistics
Matches: 68, Mismatches: 15, Indels: 21
0.65 0.14 0.20
Matches are distributed among these distances:
41 13 0.19
42 22 0.32
43 6 0.09
44 14 0.21
45 13 0.19
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (43 bp):
AGGCAAGACTTTGTGTTCGATCTGCTTCGCTGTCAATGCAGGA
Found at i:8053147 original size:86 final size:86
Alignment explanation
Indices: 8053002--8053301 Score: 494
Period size: 86 Copynumber: 3.5 Consensus size: 86
8052992 ATCCGCCATC
* * *
8053002 TTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCTGCTACAA
1 TTCGATCTGCTTCGCCGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCTGCTACAA
8053067 CCGAGAGAGGCAAGATTTGTG
66 CCGAGAGAGGCAAGATTTGTG
*
8053088 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCTGCTACAA
1 TTCGATCTGCTTCGCCGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCTGCTACAA
8053153 CCGAGAGAGGCAA-AGTTTGTG
66 CCGAGAGAGGCAAGA-TTTGTG
* *
8053174 TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAGCTCTGCTACAA
1 TTCGATCTGCTTCGCCGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCTGCTACAA
*
8053239 CCGAGAGAGGCAAGGTTTGTG
66 CCGAGAGAGGCAAGATTTGTG
*
8053260 TCTTCGATCTACTTCGCCGTCAATGCAGGAAGGCAAGATCTG
1 --TTCGATCTGCTTCGCCGTCAATGCAGGAAGGCAAGATCTG
8053302 GTAACTTTAT
Statistics
Matches: 202, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
85 1 0.00
86 163 0.81
88 38 0.19
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (86 bp):
TTCGATCTGCTTCGCCGTCAATGCAGGAAGGCAAGATCTGTTGTCTTCAACCAACTCTGCTACAA
CCGAGAGAGGCAAGATTTGTG
Found at i:8054263 original size:23 final size:23
Alignment explanation
Indices: 8054219--8054274 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
8054209 GGCCTCTCCT
*
8054219 TTTTCTTTTTTGTTCTTCTTTTC
1 TTTTCTTTTTTGTTCATCTTTTC
* * *
8054242 TTTTCTTTTTCTTTTCATTTTTTA
1 TTTTCTTTTT-TGTTCATCTTTTC
8054266 TTTT-TTTTT
1 TTTTCTTTTT
8054275 CAAGTGAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 15 0.54
24 13 0.46
ACGTcount: A:0.04, C:0.12, G:0.02, T:0.82
Consensus pattern (23 bp):
TTTTCTTTTTTGTTCATCTTTTC
Found at i:8054729 original size:8 final size:8
Alignment explanation
Indices: 8054718--8054765 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
8054708 TTCTTTTATT
8054718 TTTTTTTA
1 TTTTTTTA
8054726 TTTTTTTA
1 TTTTTTTA
* *
8054734 TTTTCTCA
1 TTTTTTTA
*
8054742 TTTTTTGTT
1 TTTTTT-TA
8054751 TTTTTTTA
1 TTTTTTTA
8054759 CTTTTTT
1 -TTTTTT
8054766 CGCCTCTTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
8 20 0.62
9 12 0.38
ACGTcount: A:0.08, C:0.06, G:0.02, T:0.83
Consensus pattern (8 bp):
TTTTTTTA
Found at i:8056182 original size:62 final size:62
Alignment explanation
Indices: 8056085--8056201 Score: 198
Period size: 62 Copynumber: 1.9 Consensus size: 62
8056075 CTCGACCTAC
* * *
8056085 TTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTGATGTTGATGGATGAATGCGTAT
1 TTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTAATGAATGAATGCGTAT
*
8056147 TTTTGGATTTTAGGAAATTTATTGTATGTAATGAAATGTAATGTTAATGAATGAA
1 TTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTAATGAATGAA
8056202 AAGATACGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.32, C:0.02, G:0.23, T:0.43
Consensus pattern (62 bp):
TTTTGGATTTTAGGAAATTTATTGTATGCAATGAAATGTAATGTTAATGAATGAATGCGTAT
Found at i:8071911 original size:12 final size:12
Alignment explanation
Indices: 8071878--8071911 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8071868 AAAATATAAA
*
8071878 ATATATATAAGT
1 ATATATATATGT
*
8071890 ATGTATATATGT
1 ATATATATATGT
8071902 ATATATATAT
1 ATATATATAT
8071912 ATAAATTACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (12 bp):
ATATATATATGT
Found at i:8073631 original size:132 final size:132
Alignment explanation
Indices: 8073391--8073931 Score: 875
Period size: 132 Copynumber: 4.1 Consensus size: 132
8073381 TGTTATTGTT
* * * * * *
8073391 GATCTGCTCTACTACTACTTAGGGTGATAGAATCTACAATCTTCAACCTATTCCACCACTGCTTA
1 GATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCGACCTACTCCACTACTGCTTA
* * * * * * *
8073456 GGGTGATAGGACTAACGACTTAAATCTGCTTCTCCACTATATTGGGAAGATAATATTTACCATAT
66 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGAAAGATAAGATTCACCATCT
8073521 TC
131 TC
* *
8073523 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATATTCGACCTACTCCACTACTGCTTA
1 GATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCGACCTACTCCACTACTGCTTA
*
8073588 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTGTATTGGAAAGATAAGATTCACCATCT
66 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGAAAGATAAGATTCACCATCT
*
8073653 TT
131 TC
*
8073655 GATCTGCTCCACTACTAATTAGGGTGACAGAATCTGCAATCTTCGACCTACTCCACTACTGCTTA
1 GATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCGACCTACTCCACTACTGCTTA
*
8073720 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTAATGGAAAGATAAGATTCACCATCT
66 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGAAAGATAAGATTCACCATCT
*
8073785 TT
131 TC
* *
8073787 GATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCGACGTACTCCACTACTGCTTA
1 GATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCGACCTACTCCACTACTGCTTA
*
8073852 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCT
66 GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGAAAGATAAGATTCACCATCT
8073917 TC
131 TC
8073919 GATCTGCTCCACT
1 GATCTGCTCCACT
8073932 GCCAAATACA
Statistics
Matches: 381, Mismatches: 28, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 381 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
GATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAATCTTCGACCTACTCCACTACTGCTTA
GGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGAAAGATAAGATTCACCATCT
TC
Found at i:8073963 original size:46 final size:46
Alignment explanation
Indices: 8073913--8074286 Score: 586
Period size: 46 Copynumber: 8.1 Consensus size: 46
8073903 AAGATTCACC
* * *
8073913 ATCTTCGATCTGCTCCACTGCCAAATACAGGAAGACATGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
8073959 ATCTTCGATCTGCTCCGCTGCCAAATATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
8074005 ATCTTCGATCTCCTCCGCTACCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
8074051 AACTTTGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
8074097 ATCTTCGATCTCTTCCGCTTCCAAATACAGGAAGATAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
8074143 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGATAAGATCTGTT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
8074189 ATCTTCGATCTTCTCCGCTGCCAAATACAGAAAGATAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* *
8074235 ATCTTCAATCTCCTCCGCTGCCAAATACAGGAAGATAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
8074281 ATCTTC
1 ATCTTC
8074287 ATTGATCTGT
Statistics
Matches: 305, Mismatches: 23, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 305 1.00
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (46 bp):
ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
Found at i:8076100 original size:12 final size:12
Alignment explanation
Indices: 8076083--8076152 Score: 50
Period size: 12 Copynumber: 5.5 Consensus size: 12
8076073 TTATGGAAAA
8076083 TTTTCTTTCTTT
1 TTTTCTTTCTTT
*
8076095 TTTTCTCTCGTTT
1 TTTTCTTTC-TTT
* *
8076108 TCTTTCTTCCCTT
1 T-TTTCTTTCTTT
*
8076121 TTTTCTCTCGTTT
1 TTTTCTTTC-TTT
* *
8076134 TCTTTCTTCCCTT
1 T-TTTCTTTCTTT
8076147 TTTTCT
1 TTTTCT
8076153 GGTTGCTACC
Statistics
Matches: 44, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
12 19 0.43
13 13 0.30
14 12 0.27
ACGTcount: A:0.00, C:0.27, G:0.03, T:0.70
Consensus pattern (12 bp):
TTTTCTTTCTTT
Found at i:8076122 original size:26 final size:26
Alignment explanation
Indices: 8076084--8076152 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
8076074 TATGGAAAAT
* *
8076084 TTTCTTTCTTTTTTTCTCTCGTTTTC
1 TTTCTTCCCTTTTTTCTCTCGTTTTC
8076110 TTTCTTCCCTTTTTTCTCTCGTTTTC
1 TTTCTTCCCTTTTTTCTCTCGTTTTC
8076136 TTTCTTCCCTTTTTTCT
1 TTTCTTCCCTTTTTTCT
8076153 GGTTGCTACC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.70
Consensus pattern (26 bp):
TTTCTTCCCTTTTTTCTCTCGTTTTC
Found at i:8086066 original size:67 final size:67
Alignment explanation
Indices: 8085958--8086092 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
8085948 TCACAATGCC
8085958 ACATTGGTTACCAAAATAACCTTGACAAATCTAACAGTTCAAAATTTTGATTACTAAACACGTTG
1 ACATTGGTTACCAAAATAACCTTGACAAATCTAACAGTTCAAAATTTTGATTACTAAACACGTTG
8086023 AA
66 AA
*
8086025 ACATTGGTTACCAAAATAACCTTGACAAATCTAACTGTTCAAAATTTTGATTACTAAACACGTTG
1 ACATTGGTTACCAAAATAACCTTGACAAATCTAACAGTTCAAAATTTTGATTACTAAACACGTTG
8086090 AA
66 AA
8086092 A
1 A
8086093 AGATAATTTA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.30
Consensus pattern (67 bp):
ACATTGGTTACCAAAATAACCTTGACAAATCTAACAGTTCAAAATTTTGATTACTAAACACGTTG
AA
Found at i:8088890 original size:98 final size:98
Alignment explanation
Indices: 8088718--8088912 Score: 363
Period size: 98 Copynumber: 2.0 Consensus size: 98
8088708 ACAATAAAAT
*
8088718 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
8088783 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
8088816 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
*
8088881 TTTAAAATCCCAAACTCGGAATATTTCCTTTA
66 TCTAAAATCCCAAACTCGGAATATTTCCTTTA
8088913 TTGTTTTTAG
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCCTTTAC
Found at i:8090403 original size:19 final size:19
Alignment explanation
Indices: 8090370--8090520 Score: 221
Period size: 19 Copynumber: 7.8 Consensus size: 19
8090360 AATCATATAT
*
8090370 TCTAATATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
8090389 TCTAAGATTATATATAATA
1 TCTAAGATTGCATATCATA
8090408 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
8090427 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
*
8090448 TCTAAGATTGCATCTCATA
1 TCTAAGATTGCATATCATA
8090467 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
8090486 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
8090505 TCTAAGATTGTATATC
1 TCTAAGATTGCATATC
8090521 CTCAAAAATT
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
19 99 0.84
21 19 0.16
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8090453 original size:59 final size:57
Alignment explanation
Indices: 8090343--8090519 Score: 228
Period size: 59 Copynumber: 3.0 Consensus size: 57
8090333 CTACAATTTA
* * * *
8090343 AATATCTAAGATTACAAAATCATATATTCTAATATTGCATATCATATCTAAGATTATATAT
1 AATATCTAAGATTGC-ATATC--ATA-TCTAAGATTGCATATCATATCTAAGATTGTATAT
* *
8090404 AATATCTAAGATTGCATATCATATCTAAGATTGCATATATCATATCTAAGATTGCATCT
1 AATATCTAAGATTGCATATCATATCTAAGATTGC--ATATCATATCTAAGATTGTATAT
* *
8090463 CATATCTAAGATTGCATATCATATCTAGGATTGCATATCATATCTAAGATTGTATAT
1 AATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGTATAT
8090520 CCTCAAAAAT
Statistics
Matches: 104, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
57 31 0.30
58 3 0.03
59 52 0.50
60 4 0.04
61 14 0.13
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (57 bp):
AATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGTATAT
Found at i:8090466 original size:78 final size:80
Alignment explanation
Indices: 8090344--8090519 Score: 241
Period size: 78 Copynumber: 2.2 Consensus size: 80
8090334 TACAATTTAA
* * * *
8090344 ATATCTAAGATTACA-AAATCATATATTCTAATATTGCATATCATATCTAAGATTATATATAATA
1 ATATCTAAGATTGCATATATCA-ATATTCTAAGATTGCATATCATATCTAAGATTACATATAATA
8090408 TCTAAGATTGCATATC
65 TCTAAGATTGCATATC
* * *
8090424 ATATCTAAGATTGCATATATC-ATA-TCTAAGATTGCATCTCATATCTAAGATTGCATATCATAT
1 ATATCTAAGATTGCATATATCAATATTCTAAGATTGCATATCATATCTAAGATTACATATAATAT
*
8090487 CTAGGATTGCATATC
66 CTAAGATTGCATATC
*
8090502 ATATCTAAGATTGTATAT
1 ATATCTAAGATTGCATAT
8090520 CCTCAAAAAT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
78 65 0.76
79 3 0.03
80 14 0.16
81 4 0.05
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (80 bp):
ATATCTAAGATTGCATATATCAATATTCTAAGATTGCATATCATATCTAAGATTACATATAATAT
CTAAGATTGCATATC
Found at i:8090745 original size:44 final size:44
Alignment explanation
Indices: 8090696--8091208 Score: 332
Period size: 44 Copynumber: 11.8 Consensus size: 44
8090686 TGCCATCTTC
*
8090696 AGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTATTT
1 AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCGTATTT
** * * * **
8090740 AGTCTGCTTTACTACAACTTCAGGGAGATAAGACTAG-ATA-CG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCGTATTT
* * *
8090782 A-TCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTAAG-GT-TTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCGTATTT
* * * **
8090824 AATCCGCTCCACTGCAACTTCAGGGAGATAAGA-TTATCGGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCGTATTT
* * *
8090868 AATCTTCTCCACTGCAACTTCAGGGAGATAAGACTTGC-CATCTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCGTAT-TT
* * *
8090912 CAGTCTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTT
1 -AGTCTGCTCCACTGCAACTTCAGGGA-GATAAGACTTGCGTATTT
* * * *
8090957 ATTCTGCTCCAGTGCAACTTCAGGGAGATAAGA-TT-TG-A-TG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCGTATTT
* * * *
8090997 CGATCTGCT-CTCTACAACTTCAGAGAGATAAGA-TATAAG-GT-TTT
1 AG-TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCGTATTT
* * * * **
8091041 AATCCGCTCCACTGCAACTTCAGGGAGATAGGA-TTATCGGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GCGTATTT
* * * *
8091085 AATCTGCTCCACTGCAACTTCAGGAAGACAAGACTTGC-CATCTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCGTAT-TT
* * *
8091129 CAGTCTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTT
1 -AGTCTGCTCCACTGCAACTTCAGGGA-GATAAGACTTGCGTATTT
*
8091174 AGTCTGCTCCACTACAACTTCAGGGAGATAAGACT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACT
8091209 AGATGCGATC
Statistics
Matches: 370, Mismatches: 67, Indels: 64
0.74 0.13 0.13
Matches are distributed among these distances:
40 42 0.11
41 16 0.04
42 7 0.02
43 20 0.05
44 204 0.55
45 79 0.21
46 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (44 bp):
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCGTATTT
Found at i:8091207 original size:89 final size:88
Alignment explanation
Indices: 8090689--8091208 Score: 321
Period size: 89 Copynumber: 6.0 Consensus size: 88
8090679 GAATTAGTGC
* * **
8090689 CATCTTCAGTCTGCCTCACTGCAACTTCA-GGAGGATAAGACTTGCTTATTTAGTCTGCTTTACT
1 CATCTTCAGTCTGCCCCACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAGTCTGCTCCACT
*
8090753 ACAACTTCAGGGAGATAAGACTAG
65 ACAACTTCAGGGAGATAAGACTTG
* * * * * * * *
8090777 -A--TAC-GATCTG-CTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTT--TTAATCCGCTCCA
1 CATCTTCAG-TCTGCCCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTACTTAGTCTGCTCCA
* *
8090835 CTGCAACTTCAGGGAGATAAGA-TTAT
63 CTACAACTTCAGGGAGATAAGACTT-G
** * * * * * *
8090861 CGGCTTTAATCTTCTCCACTGCAACTTCAGGGAGATAAGACTTGC-CATCTTCAGTCTGCCCCAC
1 CATCTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-CTT-AGTCTGCTCCAC
*
8090925 TGCAACTTCA-GGAGGATAAGACTTG
64 TACAACTTCAGGGA-GATAAGACTTG
* * * * * * * * *
8090950 CTTACTT-ATTCTGCTCCAGTGCAACTTCAGGGAGATAAGATTTG-ATGC-GA-TCTGCT-CTCT
1 CAT-CTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAGTCTGCTCCACT
*
8091010 ACAACTTCAGAGAGATAAGA-TATAAG
65 ACAACTTCAGGGAGATAAGACT-T--G
* * * * * * * *
8091036 -GT-TTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGC-T--TTAATCTGCTCCA
1 CATCTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACT-T--GCTTACTTAGTCTGCTCCA
* * *
8091096 CTGCAACTTCAGGAAGACAAGACTTG
63 CTACAACTTCAGGGAGATAAGACTTG
8091122 CCATCTTCAGTCTGCCCCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCTGCTCCAC
1 -CATCTTCAGTCTGCCCCACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAGTCTGCTCCAC
8091186 TACAACTTCAGGGAGATAAGACT
64 TACAACTTCAGGGAGATAAGACT
8091209 AGATGCGATC
Statistics
Matches: 331, Mismatches: 63, Indels: 75
0.71 0.13 0.16
Matches are distributed among these distances:
83 4 0.01
84 102 0.31
85 19 0.06
86 10 0.03
87 16 0.05
88 53 0.16
89 122 0.37
90 5 0.02
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (88 bp):
CATCTTCAGTCTGCCCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAGTCTGCTCCACTA
CAACTTCAGGGAGATAAGACTTG
Found at i:8091280 original size:44 final size:43
Alignment explanation
Indices: 8090705--8091294 Score: 318
Period size: 44 Copynumber: 13.7 Consensus size: 43
8090695 CAGTCTGCCT
* * * *
8090705 CACTGCAACTTCA-GGAGGATAAGA-CTTGCTTATTTAGTCTGCTT
1 CACTGCAACTTCAGGGA-GATAAGATCTAG-GT-TTTAATCTGCTC
* * * ***
8090749 TACTACAACTTCAGGGAGATAAGA-CTA-GATACGATCTGCT-
1 CACTGCAACTTCAGGGAGATAAGATCTAGGTTTTAATCTGCTC
* * *
8090789 CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTC
1 CACTGCAACTTCAGGGAGATAAGATCT-AGGTTTTAATCTGCTC
* *
8090833 CACTGCAACTTCAGGGAGATAAGAT-TATCGGCTTTAATCTTCTC
1 CACTGCAACTTCAGGGAGATAAGATCTA--GGTTTTAATCTGCTC
* * * * *
8090877 CACTGCAACTTCAGGGAGATAAGA-CTTGCCATCTTCAGTCTGCCC
1 CACTGCAACTTCAGGGAGATAAGATCTAG--GT-TTTAATCTGCTC
* * *
8090922 CACTGCAACTTCA-GGAGGATAAGA-CTTGCTTACTTATTCTGCTC
1 CACTGCAACTTCAGGGA-GATAAGATCTAGGTT--TTAATCTGCTC
* * * ***
8090966 CAGTGCAACTTCAGGGAGATAAGAT-T-TGATGCGATCTGCT-
1 CACTGCAACTTCAGGGAGATAAGATCTAGGTTTTAATCTGCTC
* * * * *
8091006 CTCTACAACTTCAGAGAGATAAGATATAAGGTTTTAATCCGCTC
1 CACTGCAACTTCAGGGAGATAAGATCT-AGGTTTTAATCTGCTC
* *
8091050 CACTGCAACTTCAGGGAGATAGGAT-TATCGGCTTTAATCTGCTC
1 CACTGCAACTTCAGGGAGATAAGATCTA--GGTTTTAATCTGCTC
* * * * * * *
8091094 CACTGCAACTTCAGGAAGACAAGA-CTTGCCATCTTCAGTCTGCCC
1 CACTGCAACTTCAGGGAGATAAGATCTAG--GT-TTTAATCTGCTC
* * *
8091139 CACTGCAACTTCA-GGAGGATAAGA-CTTGCTTACTTAGTCTGCTC
1 CACTGCAACTTCAGGGA-GATAAGATCTAGGTT--TTAATCTGCTC
* * ***
8091183 CACTACAACTTCAGGGAGATAAGA-CTA-GATGCGATCTGCT-
1 CACTGCAACTTCAGGGAGATAAGATCTAGGTTTTAATCTGCTC
* * * **
8091223 CTCTGCAATTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTC
1 CACTGCAACTTCAGGGAGATAAGATCT-AGGTTTTAATCTGCTC
* * *
8091267 CACTGCAACTTCAGAGATATAGGATCTA
1 CACTGCAACTTCAGGGAGATAAGATCTA
8091295 CAATCTTCAA
Statistics
Matches: 418, Mismatches: 94, Indels: 69
0.72 0.16 0.12
Matches are distributed among these distances:
40 61 0.15
41 24 0.06
42 8 0.02
43 30 0.07
44 222 0.53
45 73 0.17
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
CACTGCAACTTCAGGGAGATAAGATCTAGGTTTTAATCTGCTC
Found at i:8091333 original size:217 final size:217
Alignment explanation
Indices: 8090686--8091291 Score: 1032
Period size: 217 Copynumber: 2.8 Consensus size: 217
8090676 TAGGAATTAG
* * **
8090686 TGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTATTTAGTCTGCTTTA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
*
8090751 CTACAACTTCAGGGAGATAAGACTAGATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
66 CTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
*
8090816 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTTCTCCACT
131 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTTCTCCACT
*
8090881 GCAACTTCAGGGAGATAAGACT
196 GCAACTTCAGGGAGACAAGACT
*
8090903 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTATTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
* * * * * *
8090968 GTGCAACTTCAGGGAGATAAGATTTGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATAT
66 CTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
*
8091033 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACT
131 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTTCTCCACT
*
8091098 GCAACTTCAGGAAGACAAGACT
196 GCAACTTCAGGGAGACAAGACT
8091120 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
1 TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
*
8091185 CTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAATTTCAGAGAGATAAGATCT
66 CTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
* * *
8091250 AAGGTTTTAATCCACTCCACTGCAACTTCAGAGATATAGGAT
131 AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGAT
8091292 CTACAATCTT
Statistics
Matches: 362, Mismatches: 27, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
217 362 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (217 bp):
TGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCA
CTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCT
AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATCTTCTCCACT
GCAACTTCAGGGAGACAAGACT
Found at i:8091453 original size:132 final size:132
Alignment explanation
Indices: 8091280--8091667 Score: 713
Period size: 132 Copynumber: 2.9 Consensus size: 132
8091270 TGCAACTTCA
8091280 GAGATATAGGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCT
1 GAGATA-A-GATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCT
8091345 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCT
64 TAAATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCT
8091410 TAGG
129 TAGG
8091414 GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTA
1 GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTA
* *
8091479 AATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCATCTTCAATCTGCTCCACTACTGCTTA
66 AATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTA
8091544 GG
131 GG
* *
8091546 GAGATAAGATCTACAATCTTCAACCTTCTTCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTA
1 GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTA
*
8091611 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACT
66 AATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACT
8091668 GTCAATGCAG
Statistics
Matches: 247, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
132 240 0.97
133 1 0.00
134 6 0.02
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (132 bp):
GAGATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAGGCTTGGTGGCTTA
AATCTGCTTCCCACTATCTTGGAAAGATAAGATCCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GG
Found at i:8091565 original size:44 final size:44
Alignment explanation
Indices: 8091386--8091568 Score: 142
Period size: 44 Copynumber: 4.2 Consensus size: 44
8091376 AGATCCGCCG
*
8091386 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
* * * * * * * ***
8091430 TCTTCAACCTTCTCCGCTGCTGCTGAGGGAGACAAG-GCT-TGG
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
* * ** *
8091472 TGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAGATAAGATCCGCCA
1 T--CTTCAATCTGC-T-CCACTACTGCTTAGG-GAGATAAGATCTACAA
8091518 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
1 TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
8091562 TCTTCAA
1 TCTTCAA
8091569 CCTTCTTCGC
Statistics
Matches: 100, Mismatches: 29, Indels: 20
0.67 0.19 0.13
Matches are distributed among these distances:
42 7 0.07
43 6 0.06
44 77 0.77
45 5 0.05
46 5 0.05
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (44 bp):
TCTTCAATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAA
Found at i:8091585 original size:44 final size:44
Alignment explanation
Indices: 8091394--8091593 Score: 122
Period size: 44 Copynumber: 4.5 Consensus size: 44
8091384 CGTCTTCGAT
*
8091394 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
1 CTGCTCCGCTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
* * * * * *** * *
8091438 CTTCTCCGCTGCTGCTGAGGGAGACAAG-GCT-TGGTGGCTTAAAT
1 CTGCTCCGCTACTGCTTAGGGAGATAAGATCTACAAT--CTTCAAC
* * ** * *
8091482 CTGCTTCC-C-ACTATCTT-GGAAAGATAAGATCCGCCATCTTCAAT
1 CTGC-TCCGCTACT-GCTTAGG-GAGATAAGATCTACAATCTTCAAC
*
8091526 CTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
1 CTGCTCCGCTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
* * * *
8091570 CTTCTTCGCTGCTGCTCAGGGAGA
1 CTGCTCCGCTACTGCTTAGGGAGA
8091594 CAAGGCTTGG
Statistics
Matches: 112, Mismatches: 34, Indels: 20
0.67 0.20 0.12
Matches are distributed among these distances:
42 1 0.01
43 9 0.08
44 92 0.82
45 9 0.08
46 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (44 bp):
CTGCTCCGCTACTGCTTAGGGAGATAAGATCTACAATCTTCAAC
Found at i:8092966 original size:15 final size:15
Alignment explanation
Indices: 8092943--8093011 Score: 61
Period size: 15 Copynumber: 4.7 Consensus size: 15
8092933 GGTTTTAAGA
8092943 TTTAA-GGTTTAGGG
1 TTTAAGGGTTTAGGG
*
8092957 TTTAAGGGTTTAGCAG
1 TTTAAGGGTTTAG-GG
* **
8092973 CTTAAGATTTTAGGG
1 TTTAAGGGTTTAGGG
* *
8092988 TTTAGGGGTTTAAGG
1 TTTAAGGGTTTAGGG
8093003 TTT-AGGGTT
1 TTTAAGGGTT
8093012 AAATCCCAAA
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
14 10 0.24
15 21 0.50
16 11 0.26
ACGTcount: A:0.22, C:0.03, G:0.33, T:0.42
Consensus pattern (15 bp):
TTTAAGGGTTTAGGG
Found at i:8093742 original size:148 final size:148
Alignment explanation
Indices: 8093456--8093730 Score: 399
Period size: 148 Copynumber: 1.9 Consensus size: 148
8093446 TTTTAAAAAT
** *
8093456 GCCACAAATATTTACTACGAGTTGAGGAAACGGCGTCGTTTCCTACTTTTATTAGTGGCGCTTCA
1 GCCACAAATATTTACTACGAGTTGAGGAAACAACGCCGTTTCCTACTTTTATTAGTGGCGCTTCA
* * * *
8093521 GCTAAAGCGCCGCAAAAATGTTTAAGGTTATCTGATAACGGTGTCGTTTTGTCCATGTTATTAGT
66 GATAAAACGCCGCAAAAATGTTTAAGGTTATCTAATAACGGTGTCGTTTTGTCCATGGTATTAGT
8093586 GGCATTTTTACTGCAAGC
131 GGCATTTTTACTGCAAGC
* * * * *
8093604 GCCACAAATATTTATTA-GTGGTTGAGGTAACAACGCCGTTTCCTATTTTTATTAGTGGCGCTTT
1 GCCACAAATATTTACTACG-AGTTGAGGAAACAACGCCGTTTCCTACTTTTATTAGTGGCGCTTC
* * *
8093668 TGATAAAACGCCGTAAAAATGTTTATGGTTATCTAATAACGGTGTCGTTTTGTCCATGGTATT
65 AGATAAAACGCCGCAAAAATGTTTAAGGTTATCTAATAACGGTGTCGTTTTGTCCATGGTATT
8093731 TTTGGCGTTT
Statistics
Matches: 111, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
147 1 0.01
148 110 0.99
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.36
Consensus pattern (148 bp):
GCCACAAATATTTACTACGAGTTGAGGAAACAACGCCGTTTCCTACTTTTATTAGTGGCGCTTCA
GATAAAACGCCGCAAAAATGTTTAAGGTTATCTAATAACGGTGTCGTTTTGTCCATGGTATTAGT
GGCATTTTTACTGCAAGC
Found at i:8093792 original size:148 final size:149
Alignment explanation
Indices: 8093456--8093831 Score: 389
Period size: 148 Copynumber: 2.6 Consensus size: 149
8093446 TTTTAAAAAT
* *
8093456 GCCACAAATATTTACT-ACGAGTTGAGG--AAACGGCGTCGTTTCCTACTTTTATTAGTGGCGCT
1 GCCACAAATATTTATTAATG-GTTGAGGTAAAACGGCG-CGTTTCCTACTTTTATTAGTGGCGCT
** * * * *
8093518 TCAGCTAAAGCGCCGCAAAAATGTTTAAGGTTATCTGATAACGGTGTCGTTTTGTCCATGTTATT
64 TTTGATAAAACGCCGCAAAAATGTTTAAGGTTATCTAATAACGGTGTCGTTTTGTCCATGGTATT
8093583 AGTGGCATTTTTACTGCAAGC
129 AGTGGCATTTTTACTGCAAGC
* *
8093604 GCCACAAATATTTATTAGTGGTTGAGGTAACAAC-GC-CGTTTCCTATTTTTATTAGTGGCGCTT
1 GCCACAAATATTTATTAATGGTTGAGGTAA-AACGGCGCGTTTCCTACTTTTATTAGTGGCGCTT
* * *
8093667 TTGATAAAACGCCGTAAAAATGTTTATGGTTATCTAATAACGGTGTCGTTTTGTCCATGGTATTT
65 TTGATAAAACGCCGCAAAAATGTTTAAGGTTATCTAATAACGGTGTCGTTTTGTCCATGGTATTA
* * * *
8093732 TTGGCGTTTTTGCT-CTAAGT
130 GTGGCATTTTTACTGC-AAGC
* * * **
8093752 GCCACAAGT-TTTAGCTTAAT-G-TG-TGTAAAACGGCTGCGTTT-GTACTGATATTAGTGGCGC
1 GCCACAAATATTTA--TTAATGGTTGAGGTAAAACGGC-GCGTTTCCTACTTTTATTAGTGGCGC
*
8093812 TTATTTAT-AAACGCCGCAAA
63 TT-TTGATAAAACGCCGCAAA
8093832 TGATTTCATT
Statistics
Matches: 191, Mismatches: 26, Indels: 23
0.80 0.11 0.10
Matches are distributed among these distances:
145 3 0.02
146 6 0.03
147 35 0.18
148 136 0.71
149 5 0.03
150 3 0.02
151 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (149 bp):
GCCACAAATATTTATTAATGGTTGAGGTAAAACGGCGCGTTTCCTACTTTTATTAGTGGCGCTTT
TGATAAAACGCCGCAAAAATGTTTAAGGTTATCTAATAACGGTGTCGTTTTGTCCATGGTATTAG
TGGCATTTTTACTGCAAGC
Found at i:8094241 original size:16 final size:16
Alignment explanation
Indices: 8094220--8094328 Score: 77
Period size: 16 Copynumber: 6.9 Consensus size: 16
8094210 CTTATAACTT
8094220 TGGAATATATACTTGC
1 TGGAATATATACTTGC
* *
8094236 TGGAATATTTCCAGTTGC
1 TGGAATATAT--ACTTGC
8094254 TGG-A-ATATACTTGC
1 TGGAATATATACTTGC
*
8094268 TGG-A-ATATA-TGGC
1 TGGAATATATACTTGC
**
8094281 -CAAATATATACTTGC
1 TGGAATATATACTTGC
8094296 TGGAATATATTCCACTTGC
1 TGGAATATA-T--ACTTGC
*
8094315 TAGAATATATACTT
1 TGGAATATATACTT
8094329 TACTAAAATC
Statistics
Matches: 73, Mismatches: 11, Indels: 18
0.72 0.11 0.18
Matches are distributed among these distances:
13 4 0.05
14 19 0.26
15 3 0.04
16 22 0.30
17 2 0.03
18 9 0.12
19 14 0.19
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (16 bp):
TGGAATATATACTTGC
Found at i:8094243 original size:14 final size:14
Alignment explanation
Indices: 8094226--8094304 Score: 61
Period size: 14 Copynumber: 5.4 Consensus size: 14
8094216 ACTTTGGAAT
8094226 ATATACTTGCTGGA
1 ATATACTTGCTGGA
*
8094240 ATATTTCCAGTTGCTGGA
1 ATA--T--ACTTGCTGGA
8094258 ATATACTTGCTGGA
1 ATATACTTGCTGGA
* ***
8094272 ATATA-TGGCCAAA
1 ATATACTTGCTGGA
8094285 TATATACTTGCTGGA
1 -ATATACTTGCTGGA
8094300 ATATA
1 ATATA
8094305 TTCCACTTGC
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
13 4 0.08
14 27 0.55
15 4 0.08
16 2 0.04
18 12 0.24
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.35
Consensus pattern (14 bp):
ATATACTTGCTGGA
Found at i:8095844 original size:19 final size:19
Alignment explanation
Indices: 8095822--8095862 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
8095812 ATTTTTAATA
*
8095822 TATATATATTTTAAAATTT
1 TATATATATTTGAAAATTT
8095841 TATATATATTTGAAAATTT
1 TATATATATTTGAAAATTT
8095860 TAT
1 TAT
8095863 CAATCATATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TATATATATTTGAAAATTT
Found at i:8095845 original size:23 final size:27
Alignment explanation
Indices: 8095796--8095849 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
8095786 AACATCTTTG
*
8095796 ATATATATTTATATACATTTTTAATAT
1 ATATATATTTATATACAATTTTAATAT
8095823 ATATATATTT-TA-A-AATTTT-ATAT
1 ATATATATTTATATACAATTTTAATAT
8095846 ATAT
1 ATAT
8095850 TTGAAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 8 0.31
24 5 0.19
25 1 0.04
26 2 0.08
27 10 0.38
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (27 bp):
ATATATATTTATATACAATTTTAATAT
Found at i:8095944 original size:21 final size:21
Alignment explanation
Indices: 8095918--8095989 Score: 74
Period size: 21 Copynumber: 3.3 Consensus size: 21
8095908 CTTACACGAC
8095918 ACATAACTTACATAATAACTT
1 ACATAACTTACATAATAACTT
*
8095939 ACATAACTTATAT-ATAAACTTAT
1 ACATAACTTACATAAT-AAC-T-T
*
8095962 ATATAACTTACATACATAACTT
1 ACATAACTTACATA-ATAACTT
*
8095984 AAATAA
1 ACATAA
8095990 AATTTATATA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
20 2 0.05
21 15 0.36
22 7 0.17
23 13 0.31
24 3 0.07
25 2 0.05
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (21 bp):
ACATAACTTACATAATAACTT
Found at i:8096006 original size:36 final size:36
Alignment explanation
Indices: 8095938--8096009 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
8095928 CATAATAACT
*
8095938 TACATAACTTATATATAAACTTATATATAACTTACA
1 TACATAACTTAAATATAAACTTATATATAACTTACA
*
8095974 TACATAACTTAAATA-AAATTTATATATAAACTTACA
1 TACATAACTTAAATATAAACTTATATAT-AACTTACA
8096010 CAACACATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 11 0.33
36 22 0.67
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (36 bp):
TACATAACTTAAATATAAACTTATATATAACTTACA
Found at i:8096124 original size:9 final size:9
Alignment explanation
Indices: 8096110--8096217 Score: 52
Period size: 9 Copynumber: 12.1 Consensus size: 9
8096100 TTTACACAAC
8096110 ACATAACTT
1 ACATAACTT
8096119 ACATAATAACTT
1 AC---ATAACTT
8096131 ACATAACTTAT
1 ACATAAC-T-T
*
8096142 ACATGACTTAT
1 ACATAAC-T-T
*
8096153 ATATAACTT
1 ACATAACTT
*
8096162 TCATAACTT
1 ACATAACTT
*
8096171 AC-TTA--T
1 ACATAACTT
8096177 A-ATAACTT
1 ACATAACTT
8096185 ACATAACTT
1 ACATAACTT
*
8096194 AC-TTA--T
1 ACATAACTT
8096200 A-ATAACTT
1 ACATAACTT
8096208 ACATAACTT
1 ACATAACTT
8096217 A
1 A
8096218 TTAATATTTA
Statistics
Matches: 76, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
6 8 0.11
8 8 0.11
9 33 0.43
10 2 0.03
11 16 0.21
12 9 0.12
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.38
Consensus pattern (9 bp):
ACATAACTT
Found at i:8096150 original size:11 final size:11
Alignment explanation
Indices: 8096110--8096171 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
8096100 TTTACACAAC
8096110 ACATAACTTACAT
1 ACATAACTT--AT
8096123 A-ATAAC-T-T
1 ACATAACTTAT
8096131 ACATAACTTAT
1 ACATAACTTAT
*
8096142 ACATGACTTAT
1 ACATAACTTAT
*
8096153 ATATAACTT-T
1 ACATAACTTAT
8096163 -CATAACTTA
1 ACATAACTTA
8096172 CTTATAATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
8 2 0.05
9 12 0.29
10 2 0.05
11 19 0.46
12 5 0.12
13 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.37
Consensus pattern (11 bp):
ACATAACTTAT
Found at i:8096160 original size:43 final size:45
Alignment explanation
Indices: 8096112--8096215 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 45
8096102 TACACAACAC
* *
8096112 ATAACTTACATAA-TAACTTA-CATAACTTATACATGACTTA-TAT-
1 ATAACTTACATAACTAACTTATAATAAC-T-TACATAACTTACTATA
* *
8096155 ATAACTTTCATAACTTACTTATAATAACTTACATAACTTACTTATA
1 ATAACTTACATAACTAACTTATAATAACTTACATAACTTAC-TATA
8096201 ATAACTTACATAACT
1 ATAACTTACATAACT
8096216 TATTAATATT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
43 22 0.43
44 7 0.14
45 8 0.16
46 14 0.27
ACGTcount: A:0.43, C:0.17, G:0.01, T:0.38
Consensus pattern (45 bp):
ATAACTTACATAACTAACTTATAATAACTTACATAACTTACTATA
Found at i:8096181 original size:96 final size:96
Alignment explanation
Indices: 8095879--8096166 Score: 499
Period size: 96 Copynumber: 3.0 Consensus size: 96
8095869 TATCATAATT
* *
8095879 TACAT-ACATAAATAAAATTTATATATAAACTTACACGACACATAACTTACATAATAACTTACAT
1 TACATAACTTAAATAAAATTTATATATAAACTTACACAACACATAACTTACATAATAACTTACAT
8095943 AACTTATATATAAACTTATATATAACTTACA
66 AACTTATATATAAACTTATATATAACTTACA
8095974 TACATAACTTAAATAAAATTTATATATAAACTTACACAACACATAACTTACATAATAACTTACAT
1 TACATAACTTAAATAAAATTTATATATAAACTTACACAACACATAACTTACATAATAACTTACAT
*
8096039 AACTTATATATAAACTTATAAATAACTTACA
66 AACTTATATATAAACTTATATATAACTTACA
*
8096070 TACATAACTTAAATAAAATTTATATATAAATTTACACAACACATAACTTACATAATAACTTACAT
1 TACATAACTTAAATAAAATTTATATATAAACTTACACAACACATAACTTACATAATAACTTACAT
* * *
8096135 AACTTATACAT-GACTTATATATAACTTTCA
66 AACTTATATATAAACTTATATATAACTTACA
8096165 TA
1 TA
8096167 ACTTACTTAT
Statistics
Matches: 184, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
95 23 0.12
96 161 0.88
ACGTcount: A:0.49, C:0.16, G:0.01, T:0.34
Consensus pattern (96 bp):
TACATAACTTAAATAAAATTTATATATAAACTTACACAACACATAACTTACATAATAACTTACAT
AACTTATATATAAACTTATATATAACTTACA
Found at i:8096183 original size:14 final size:14
Alignment explanation
Indices: 8096164--8096209 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
8096154 TATAACTTTC
8096164 ATAACTTACTTATA
1 ATAACTTACTTATA
8096178 ATAACTTAC-----
1 ATAACTTACTTATA
8096187 ATAACTTACTTATA
1 ATAACTTACTTATA
8096201 ATAACTTAC
1 ATAACTTAC
8096210 ATAACTTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 10
0.73 0.00 0.27
Matches are distributed among these distances:
9 9 0.33
14 18 0.67
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.39
Consensus pattern (14 bp):
ATAACTTACTTATA
Found at i:8096189 original size:23 final size:23
Alignment explanation
Indices: 8096147--8096217 Score: 124
Period size: 23 Copynumber: 3.0 Consensus size: 23
8096137 CTTATACATG
*
8096147 ACTTATATATAACTTTCATAACTT
1 ACTTATA-ATAACTTACATAACTT
8096171 ACTTATAATAACTTACATAACTT
1 ACTTATAATAACTTACATAACTT
8096194 ACTTATAATAACTTACATAACTT
1 ACTTATAATAACTTACATAACTT
8096217 A
1 A
8096218 TTAATATTTA
Statistics
Matches: 46, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 39 0.85
24 7 0.15
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.41
Consensus pattern (23 bp):
ACTTATAATAACTTACATAACTT
Found at i:8098990 original size:21 final size:22
Alignment explanation
Indices: 8098947--8099005 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
8098937 AGTAGAGGCG
* *
8098947 GCAGCGAGGGAAACAG-CGACT
1 GCAGCGAGGGAAGCAGAAGACT
8098968 GCAGCGAGGGAAGCAGAAG-CT
1 GCAGCGAGGGAAGCAGAAGACT
* *
8098989 GCAGTGAGAGAAGCAGA
1 GCAGCGAGGGAAGCAGA
8099006 GCAAAGCAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 32 0.97
22 1 0.03
ACGTcount: A:0.36, C:0.19, G:0.41, T:0.05
Consensus pattern (22 bp):
GCAGCGAGGGAAGCAGAAGACT
Found at i:8099339 original size:14 final size:14
Alignment explanation
Indices: 8099322--8099355 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
8099312 GTTTTTGTAG
8099322 TTCTTTAGCGGCGC
1 TTCTTTAGCGGCGC
*
8099336 TTCTTTAGCGGCGT
1 TTCTTTAGCGGCGC
8099350 TTCTTT
1 TTCTTT
8099356 CTAAGCGCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.06, C:0.24, G:0.24, T:0.47
Consensus pattern (14 bp):
TTCTTTAGCGGCGC
Found at i:8104409 original size:7 final size:7
Alignment explanation
Indices: 8104397--8104431 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
8104387 TGGAGAACGA
8104397 AATGAAG
1 AATGAAG
8104404 AATGAAG
1 AATGAAG
8104411 AATGAAG
1 AATGAAG
8104418 -ATGAAG
1 AATGAAG
8104424 AATGAAG
1 AATGAAG
8104431 A
1 A
8104432 TGATGATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14
Consensus pattern (7 bp):
AATGAAG
Found at i:8104423 original size:13 final size:13
Alignment explanation
Indices: 8104397--8104434 Score: 67
Period size: 13 Copynumber: 2.8 Consensus size: 13
8104387 TGGAGAACGA
8104397 AATGAAGAATGAAG
1 AATGAAG-ATGAAG
8104411 AATGAAGATGAAG
1 AATGAAGATGAAG
8104424 AATGAAGATGA
1 AATGAAGATGA
8104435 TGATAATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 17 0.71
14 7 0.29
ACGTcount: A:0.55, C:0.00, G:0.29, T:0.16
Consensus pattern (13 bp):
AATGAAGATGAAG
Found at i:8110198 original size:27 final size:27
Alignment explanation
Indices: 8110168--8110240 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
8110158 TCATCGGGAT
* *
8110168 AGTAAATACCGGATAGTCCATCATAAC
1 AGTAAACACCGGATAGTCCATCAGAAC
* * * *
8110195 AGTAAACACAGGGTAGTCCGTCAGGAC
1 AGTAAACACCGGATAGTCCATCAGAAC
8110222 AGTAAACA-CGGAATAGTCC
1 AGTAAACACCGG-ATAGTCC
8110241 GCAATGACAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.05
27 35 0.95
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
AGTAAACACCGGATAGTCCATCAGAAC
Found at i:8110241 original size:27 final size:27
Alignment explanation
Indices: 8110193--8110261 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
8110183 GTCCATCATA
*
8110193 ACAGTAAACACAGG-GTAGTCCGTC-AGG
1 ACAGTAAACAC-GGAATAGTCCG-CAAGG
*
8110220 ACAGTAAACACGGAATAGTCCGCAATG
1 ACAGTAAACACGGAATAGTCCGCAAGG
8110247 ACAGTAAACACGGAA
1 ACAGTAAACACGGAA
8110262 AAGTTCACTG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 3 0.08
27 35 0.92
ACGTcount: A:0.41, C:0.22, G:0.25, T:0.13
Consensus pattern (27 bp):
ACAGTAAACACGGAATAGTCCGCAAGG
Found at i:8111646 original size:28 final size:28
Alignment explanation
Indices: 8111615--8111672 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
8111605 TTCCTCCGAC
8111615 AAGTTTGGGCTATTTTGCAAAGTTTAGT
1 AAGTTTGGGCTATTTTGCAAAGTTTAGT
8111643 AAGTTTGGGCTATTTTGCAAAGTTTAGT
1 AAGTTTGGGCTATTTTGCAAAGTTTAGT
8111671 AA
1 AA
8111673 AGAAATTCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (28 bp):
AAGTTTGGGCTATTTTGCAAAGTTTAGT
Found at i:8114195 original size:15 final size:15
Alignment explanation
Indices: 8114164--8114198 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8114154 TCTTTTTGAA
* *
8114164 TTTTTATTTTTTTAT
1 TTTTTATATTTTCAT
8114179 TTTTTATATTTTCAT
1 TTTTTATATTTTCAT
8114194 TTTTT
1 TTTTT
8114199 GTAATTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTATATTTTCAT
Found at i:8114242 original size:74 final size:72
Alignment explanation
Indices: 8114178--8114312 Score: 215
Period size: 74 Copynumber: 1.9 Consensus size: 72
8114168 TATTTTTTTA
8114178 TTTTTTATATT-TTCA-TTTTTTGTAATTTTCTAAATTTTTAACTATTTTTTTAATTTTTATTTT
1 TTTTTTAT-TTGTTCATTTTTTTGTAATTTTCTAAATTTTTAACTATTTTTTT-ATTTTTATTTT
8114241 TTTCGAAAT
64 TTTCGAAAT
8114250 TTTTTTATTTGTTCATTTTTTTTGTAATTTTCTAAATTTTTAACTA--TTTTTATTTTTATTTTT
1 TTTTTTATTTGTTCA-TTTTTTTGTAATTTTCTAAATTTTTAACTATTTTTTTATTTTTATTTTT
8114313 GAATTATATA
Statistics
Matches: 60, Mismatches: 0, Indels: 7
0.90 0.00 0.10
Matches are distributed among these distances:
71 14 0.23
72 17 0.28
74 29 0.48
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.70
Consensus pattern (72 bp):
TTTTTTATTTGTTCATTTTTTTGTAATTTTCTAAATTTTTAACTATTTTTTTATTTTTATTTTTT
TCGAAAT
Found at i:8114244 original size:37 final size:35
Alignment explanation
Indices: 8114203--8114312 Score: 109
Period size: 37 Copynumber: 3.1 Consensus size: 35
8114193 TTTTTTGTAA
8114203 TTTTCTAAATTTTTAACTATTTTTTTAATTTTTATTT
1 TTTTCTAAATTTTTAACTA-TTTTTT-ATTTTTATTT
* * * *
8114240 TTTTCGAAATTTTT--TTATTTGTTCATTTTTTTTGT
1 TTTTCTAAATTTTTAACTATTT-TTTATTTTTATT-T
8114275 AATTTTCTAAATTTTTAACTA-TTTTTATTTTTATTT
1 --TTTTCTAAATTTTTAACTATTTTTTATTTTTATTT
8114311 TT
1 TT
8114313 GAATTATATA
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
34 13 0.22
35 5 0.08
36 1 0.02
37 36 0.61
38 2 0.03
39 2 0.03
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (35 bp):
TTTTCTAAATTTTTAACTATTTTTTATTTTTATTT
Found at i:8114278 original size:28 final size:27
Alignment explanation
Indices: 8114221--8114291 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
8114211 ATTTTTAACT
8114221 ATTTTTTTAATTTTTATTTTTTTCGAA
1 ATTTTTTTAATTTTTATTTTTTTCGAA
* *
8114248 ATTTTTTT-ATTTGTTCATTTTTTTTGTA
1 ATTTTTTTAATTT-TT-ATTTTTTTCGAA
* *
8114276 ATTTTCTAAATTTTTA
1 ATTTTTTTAATTTTTA
8114292 ACTATTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
26 4 0.11
27 11 0.30
28 18 0.49
29 4 0.11
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.70
Consensus pattern (27 bp):
ATTTTTTTAATTTTTATTTTTTTCGAA
Found at i:8128820 original size:14 final size:14
Alignment explanation
Indices: 8128762--8128824 Score: 56
Period size: 14 Copynumber: 4.5 Consensus size: 14
8128752 GTCTTTCATT
* *
8128762 AAGTGTTTTTCATC
1 AAGTTTTTTTTATC
* *
8128776 TAGTTCTTTTT-TC
1 AAGTTTTTTTTATC
* *
8128789 AAGTTTTTAATTACC
1 AAGTTTTT-TTTATC
8128804 AAGTTTTTTTTATC
1 AAGTTTTTTTTATC
8128818 AAGTTTT
1 AAGTTTT
8128825 GCAGCAAGTT
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
13 8 0.22
14 20 0.54
15 9 0.24
ACGTcount: A:0.22, C:0.11, G:0.10, T:0.57
Consensus pattern (14 bp):
AAGTTTTTTTTATC
Found at i:8128856 original size:24 final size:24
Alignment explanation
Indices: 8128766--8128883 Score: 85
Period size: 25 Copynumber: 4.6 Consensus size: 24
8128756 TTCATTAAGT
* *
8128766 GTTTTTCATCTAGTTCTTTTTTCAA
1 GTTTTTCATCAAGTTC-TTTTTAAA
* *
8128791 GTTTTTAATTACCAAGTTTTTTTTATCAA
1 GTTTTTCA-T--CAAGTTCTTTTTA--AA
* *
8128820 GTTTTGCAGCAAGTTCTTTTTAAA
1 GTTTTTCATCAAGTTCTTTTTAAA
8128844 GTTTTTCATCAAG-TCTTTTCATAAA
1 GTTTTTCATCAAGTTCTTTT--TAAA
* *
8128869 ATTTTCCATCAAGTT
1 GTTTTTCATCAAGTT
8128884 TTTAATCATT
Statistics
Matches: 73, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
23 6 0.08
24 13 0.18
25 22 0.30
26 14 0.19
27 5 0.07
28 5 0.07
29 8 0.11
ACGTcount: A:0.25, C:0.14, G:0.09, T:0.52
Consensus pattern (24 bp):
GTTTTTCATCAAGTTCTTTTTAAA
Found at i:8128857 original size:12 final size:12
Alignment explanation
Indices: 8128809--8128891 Score: 60
Period size: 12 Copynumber: 6.8 Consensus size: 12
8128799 TTACCAAGTT
*
8128809 TTTTTTATCAAG
1 TTTTTCATCAAG
* *
8128821 TTTTGCAGCAAG
1 TTTTTCATCAAG
* *
8128833 TTCTTT-TTAAAG
1 TT-TTTCATCAAG
8128845 TTTTTCATCAAG
1 TTTTTCATCAAG
* *
8128857 TCTTTTCATAAAA
1 T-TTTTCATCAAG
*
8128870 TTTTCCATCAAG
1 TTTTTCATCAAG
*
8128882 TTTTTAATCA
1 TTTTTCATCA
8128892 TTTCGTTTTT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
11 3 0.06
12 37 0.71
13 12 0.23
ACGTcount: A:0.28, C:0.14, G:0.08, T:0.49
Consensus pattern (12 bp):
TTTTTCATCAAG
Found at i:8128868 original size:25 final size:23
Alignment explanation
Indices: 8128818--8128886 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
8128808 TTTTTTTATC
* *
8128818 AAGTTTTGCAGCAAGTTCTTTTTA
1 AAGTTTTCCATCAAG-TCTTTTTA
*
8128842 AAGTTTTTCATCAAGTCTTTTCATA
1 AAGTTTTCCATCAAGTCTTTT--TA
*
8128867 AAATTTTCCATCAAGT-TTTT
1 AAGTTTTCCATCAAGTCTTTT
8128887 AATCATTTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.15
24 17 0.44
25 16 0.41
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48
Consensus pattern (23 bp):
AAGTTTTCCATCAAGTCTTTTTA
Found at i:8131154 original size:45 final size:46
Alignment explanation
Indices: 8131059--8131154 Score: 115
Period size: 45 Copynumber: 2.1 Consensus size: 46
8131049 ATAAATTATC
****
8131059 ATAA-AATATTATCATAATATAAAATAAATATTTATTAAAATGTTT
1 ATAATAATATTATCATAATATAAAATAAATATTTATTAAAATCAAA
* * *
8131104 TTAATAAT-TTATCATAATATAAATTAAATATTTATTAATATCAAA
1 ATAATAATATTATCATAATATAAAATAAATATTTATTAAAATCAAA
8131149 ATAATA
1 ATAATA
8131155 CAAACATTGC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
45 39 0.93
46 3 0.07
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (46 bp):
ATAATAATATTATCATAATATAAAATAAATATTTATTAAAATCAAA
Found at i:8133307 original size:39 final size:39
Alignment explanation
Indices: 8133244--8133396 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
8133234 CATGTTTTTA
*
8133244 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
* *
8133283 AGTGTTGTGATATATGTTTAAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
*
8133322 AGTATTGTGATATATGCTTAAATTTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
* * * * *
8133361 TGTAATGTGATACATGCTTAAAAGTGAATGTGATTA
1 AGTATTGTGATATATGCTTAAATGT-TATGTGATTA
8133397 CCATGTAAAT
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 92 0.91
40 9 0.09
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.45
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
Found at i:8133313 original size:22 final size:21
Alignment explanation
Indices: 8133288--8133368 Score: 50
Period size: 22 Copynumber: 3.9 Consensus size: 21
8133278 ATATGAGTGT
8133288 TGTGA-TATATGTTTAAATGTTA
1 TGTGATTATATG-TT-AATGTTA
8133310 TGTGATTATATG---A-G-TA
1 TGTGATTATATGTTAATGTTA
*
8133326 TTGTGA-TATATGCTTAAATTTTA
1 -TGTGATTATATG-TT-AATGTTA
8133349 TGTGATTATATGTGTAATGT
1 TGTGATTATATGT-TAATGT
8133369 GATACATGCT
Statistics
Matches: 46, Mismatches: 2, Indels: 22
0.66 0.03 0.31
Matches are distributed among these distances:
16 8 0.17
17 6 0.13
18 1 0.02
21 1 0.02
22 15 0.33
23 15 0.33
ACGTcount: A:0.30, C:0.01, G:0.20, T:0.49
Consensus pattern (21 bp):
TGTGATTATATGTTAATGTTA
Found at i:8134306 original size:30 final size:30
Alignment explanation
Indices: 8134266--8134332 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
8134256 TATTTAAAAG
8134266 CATGTTTGGCATGTTCTAATGATTATTGATA
1 CATG-TTGGCATGTTCTAATGATTATTGATA
*
8134297 CATGTTGGCATGTTTTAATGATTATTGATA
1 CATGTTGGCATGTTCTAATGATTATTGATA
8134327 CATGTT
1 CATGTT
8134333 TGACTAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 31 0.89
31 4 0.11
ACGTcount: A:0.25, C:0.09, G:0.19, T:0.46
Consensus pattern (30 bp):
CATGTTGGCATGTTCTAATGATTATTGATA
Found at i:8140153 original size:26 final size:27
Alignment explanation
Indices: 8140117--8140178 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
8140107 GGCCTGACCC
* * *
8140117 ATTTTTAAAAT-AAACATTAAAAAATT
1 ATTTTAAAAATAAAAAATAAAAAAATT
8140143 ATTTTAAAAATAAAAAATAAAAAAATT
1 ATTTTAAAAATAAAAAATAAAAAAATT
8140170 ATTTTAAAA
1 ATTTTAAAA
8140179 GTATTTTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 10 0.31
27 22 0.69
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (27 bp):
ATTTTAAAAATAAAAAATAAAAAAATT
Found at i:8141148 original size:42 final size:42
Alignment explanation
Indices: 8141092--8141229 Score: 102
Period size: 42 Copynumber: 3.3 Consensus size: 42
8141082 TCGTGTTTAC
* * *
8141092 TTTCTGTTTAGCTCTCA-CGACCTTCTGTTTAA-CTTATATGAG
1 TTTCCGTTCAGCTCT-ATCGACCTTCTGTTTAACCCT-TATGAG
* * *
8141134 TTTCCGTTCAGCTCTATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTCTATCGACCTTCTGTTTAACCCTTATGAG
* * *** *
8141176 TTTCCGTTCAACCCTTAT-GGGTTTCTGTTTAGCCCTTATGAG
1 TTTCCGTTCAGCTC-TATCGACCTTCTGTTTAACCCTTATGAG
* *
8141218 CTTCTGTTCAGC
1 TTTCCGTTCAGC
8141230 CTTCGGGCTT
Statistics
Matches: 78, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.01
42 72 0.92
43 5 0.06
ACGTcount: A:0.15, C:0.24, G:0.17, T:0.43
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTATCGACCTTCTGTTTAACCCTTATGAG
Found at i:8141230 original size:21 final size:21
Alignment explanation
Indices: 8141128--8141230 Score: 91
Period size: 21 Copynumber: 4.9 Consensus size: 21
8141118 GTTTAACTTA
* *
8141128 TATGAGTTTCCGTTCAGCTC-
1 TATGAGTTTCTGTTCAGCCCT
* * *
8141148 TATTGAGCTTCTGTTTAACCCT
1 TA-TGAGTTTCTGTTCAGCCCT
* * *
8141170 TATGGGTTTCCGTTCAACCCT
1 TATGAGTTTCTGTTCAGCCCT
* *
8141191 TATGGGTTTCTGTTTAGCCCT
1 TATGAGTTTCTGTTCAGCCCT
*
8141212 TATGAGCTTCTGTTCAGCC
1 TATGAGTTTCTGTTCAGCC
8141231 TTCGGGCTTT
Statistics
Matches: 66, Mismatches: 15, Indels: 3
0.79 0.18 0.04
Matches are distributed among these distances:
20 2 0.03
21 62 0.94
22 2 0.03
ACGTcount: A:0.15, C:0.24, G:0.19, T:0.42
Consensus pattern (21 bp):
TATGAGTTTCTGTTCAGCCCT
Found at i:8146974 original size:26 final size:26
Alignment explanation
Indices: 8146930--8146980 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
8146920 TATATAGCTC
*
8146930 TTTGTGAGCTTCCCGATTAAAGGCTA
1 TTTGTGAGCTTCCCAATTAAAGGCTA
* *
8146956 TTTGTGAGCTTCCTAATTAATGGCT
1 TTTGTGAGCTTCCCAATTAAAGGCT
8146981 CTCCAGAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.39
Consensus pattern (26 bp):
TTTGTGAGCTTCCCAATTAAAGGCTA
Found at i:8147049 original size:73 final size:73
Alignment explanation
Indices: 8146961--8147101 Score: 178
Period size: 73 Copynumber: 1.9 Consensus size: 73
8146951 GGCTATTTGT
* * *
8146961 GAGCTTCCTAATTAATGGCTCTCCAGAGCTTCCCGATA-TGGCTCGCTTGAA-CTTCTTGATATA
1 GAGCTTCCTAATTAATGGCTCTCCAGAGCTACCCGATATTGGCTCGCAT-AAGCTTCCTGAT-TA
8147024 TGGCTATCCA
64 TGGCTATCCA
** * * *
8147034 GAGCTTCCTGGTTAATGGCTCTTCGGAGCTACCCGTTATTGGCTCGCATAAGCTTCCTGATTATG
1 GAGCTTCCTAATTAATGGCTCTCCAGAGCTACCCGATATTGGCTCGCATAAGCTTCCTGATTATG
8147099 GCT
66 GCT
8147102 CTTATGAGCT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
73 41 0.71
74 17 0.29
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (73 bp):
GAGCTTCCTAATTAATGGCTCTCCAGAGCTACCCGATATTGGCTCGCATAAGCTTCCTGATTATG
GCTATCCA
Found at i:8147134 original size:49 final size:49
Alignment explanation
Indices: 8147035--8147139 Score: 113
Period size: 49 Copynumber: 2.1 Consensus size: 49
8147025 GGCTATCCAG
* * ** *
8147035 AGCTTCCTGGTTAATGGCTCTTCGGAGCTACCCGTTATTGGCTCGCATA
1 AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTATCAGCCCGCATA
* * *
8147084 AGCTTCCTGATT-ATGGCTCTTATGAGCTTCCCGTTATACAGCCCGGATA
1 AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTAT-CAGCCCGCATA
*
8147133 AGGTTCC
1 AGCTTCC
8147140 CGTTACAAGG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
48 22 0.48
49 24 0.52
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (49 bp):
AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTATCAGCCCGCATA
Found at i:8150564 original size:18 final size:17
Alignment explanation
Indices: 8150534--8150577 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 17
8150524 TTAATTAAAT
8150534 AAAAAGG-ACTAAATTG
1 AAAAAGGTACTAAATTG
8150550 AAAAATGGTACTAAATTG
1 AAAAA-GGTACTAAATTG
8150568 AAAAAGGTAC
1 AAAAAGGTAC
8150578 AAAACTTGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.19
17 7 0.27
18 14 0.54
ACGTcount: A:0.55, C:0.07, G:0.18, T:0.20
Consensus pattern (17 bp):
AAAAAGGTACTAAATTG
Found at i:8150571 original size:17 final size:18
Alignment explanation
Indices: 8150534--8150577 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
8150524 TTAATTAAAT
8150534 AAAAAGG-ACTAAATTGA
1 AAAAAGGTACTAAATTGA
*
8150551 AAAATGGTACTAAATTG-
1 AAAAAGGTACTAAATTGA
8150568 AAAAAGGTAC
1 AAAAAGGTAC
8150578 AAAACTTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.55, C:0.07, G:0.18, T:0.20
Consensus pattern (18 bp):
AAAAAGGTACTAAATTGA
Found at i:8153174 original size:39 final size:40
Alignment explanation
Indices: 8153109--8153263 Score: 201
Period size: 39 Copynumber: 4.0 Consensus size: 40
8153099 AACATTTTTT
*
8153109 TGAGTATTGTGATATCTGCTTC-AATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTCAAATGTTATGTGATTATA
*
8153148 TGAGTATTGTGATATATG-TTCAAATGTTATGTAATTATA
1 TGAGTATTGTGATATATGCTTCAAATGTTATGTGATTATA
*
8153187 TGAGTATTGTGATATATGCTT-AAATTTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTCAAATGTTATGTGATTATA
* * * * *
8153226 TGTGTAATGTGATACATGCTT-AAAAGTGAATGTGATTA
1 TGAGTATTGTGATATATGCTTCAAATGT-TATGTGATTA
8153264 CCATGTAAAT
Statistics
Matches: 103, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
38 3 0.03
39 89 0.86
40 11 0.11
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.45
Consensus pattern (40 bp):
TGAGTATTGTGATATATGCTTCAAATGTTATGTGATTATA
Found at i:8154032 original size:113 final size:112
Alignment explanation
Indices: 8153889--8154123 Score: 416
Period size: 113 Copynumber: 2.1 Consensus size: 112
8153879 CCTATCACGA
*
8153889 GTATCGATCCTCGGGTAATTTTATCAATACTTTTTCAATTGTACCGATATTTTGTTGTGTTTTTA
1 GTATCGATACTCGGGTAATTTTATCAATACTTTTTCAATTGTACCGATATTTTGTTGTGTTTTTA
* *
8153954 TTTTAGACAATAAACAGAATGCTGATTTGGTACTGACTTTCTATATG
66 TTTTAGACAATAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
* *
8154001 GTATCGATACTCGGGGTAATTTTATCGATACTTTTTCAGTTGTACCGATATTTTGTTGTGTTTTT
1 GTATCGATACTC-GGGTAATTTTATCAATACTTTTTCAATTGTACCGATATTTTGTTGTGTTTTT
8154066 ATTTTAGACAATAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
65 ATTTTAGACAATAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
8154114 GTATCGATAC
1 GTATCGATAC
8154124 CGTAAAAGGA
Statistics
Matches: 117, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
112 11 0.09
113 106 0.91
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (112 bp):
GTATCGATACTCGGGTAATTTTATCAATACTTTTTCAATTGTACCGATATTTTGTTGTGTTTTTA
TTTTAGACAATAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
Found at i:8159138 original size:33 final size:32
Alignment explanation
Indices: 8159054--8159144 Score: 103
Period size: 33 Copynumber: 2.8 Consensus size: 32
8159044 CATAAAGATA
*
8159054 AAGTCCACCAGGACAGTAAACACGAAACAGAGT
1 AAGTCCA-TAGGACAGTAAACACGAAACAGAGT
* * *
8159087 AAGTTCACT-GGAATAGTAAACACGAAATAGAGT
1 AAGTCCA-TAGG-ACAGTAAACACGAAACAGAGT
8159120 AAGTCCATAAGGACAGTAAACACGA
1 AAGTCCAT-AGGACAGTAAACACGA
8159145 GGTAAGCCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
32 3 0.06
33 44 0.90
34 2 0.04
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.14
Consensus pattern (32 bp):
AAGTCCATAGGACAGTAAACACGAAACAGAGT
Found at i:8164044 original size:4 final size:4
Alignment explanation
Indices: 8164035--8164288 Score: 294
Period size: 4 Copynumber: 63.5 Consensus size: 4
8164025 TATAATTCAA
* * * *
8164035 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
8164083 ATGC ATAC ATAC ATGC ATAT ATAC TTAC ATAC ATAC ATGC ATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
8164131 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * *
8164179 ATCC ATCC ATCC ATCC ATCC ATAC ATAC ATAC ATAC AT-C TATAC ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC -ATAC ATAC
* * * * *
8164227 ATCC ATAC ATAC ATGC ATGC ATGC ATAC ATAC ATAA ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
8164275 ATAC ATAC ATAC AT
1 ATAC ATAC ATAC AT
8164289 CACTTATACT
Statistics
Matches: 225, Mismatches: 23, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
3 1 0.00
4 223 0.99
5 1 0.00
ACGTcount: A:0.42, C:0.27, G:0.05, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:8164728 original size:21 final size:21
Alignment explanation
Indices: 8164690--8164749 Score: 70
Period size: 21 Copynumber: 3.0 Consensus size: 21
8164680 TAAATATGCC
*
8164690 AACAGAAGCTCG--AAAGCTG
1 AACAAAAGCTCGTAAAAGCTG
*
8164709 AATAAAAGCTCGTAAAAGCTG
1 AACAAAAGCTCGTAAAAGCTG
* *
8164730 AACAGAAGCTCGTAAGAGCT
1 AACAAAAGCTCGTAAAAGCT
8164750 AATCCACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 10 0.29
21 24 0.71
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.15
Consensus pattern (21 bp):
AACAAAAGCTCGTAAAAGCTG
Found at i:8176734 original size:20 final size:20
Alignment explanation
Indices: 8176706--8176748 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
8176696 ATTCCTAGTA
*
8176706 CTTAGAAATATT-GTTAAATC
1 CTTAAAAATATTAG-TAAATC
8176726 CTTAAAAATATTAGTAAATC
1 CTTAAAAATATTAGTAAATC
8176746 CTT
1 CTT
8176749 GTATATCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.40
Consensus pattern (20 bp):
CTTAAAAATATTAGTAAATC
Found at i:8182601 original size:15 final size:15
Alignment explanation
Indices: 8182583--8182620 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
8182573 AAATATTTTT
8182583 TTATAAAATTCTAAA
1 TTATAAAATTCTAAA
*
8182598 TTATATAATTCTAAA
1 TTATAAAATTCTAAA
*
8182613 TTTTAAAA
1 TTATAAAA
8182621 ATTCAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (15 bp):
TTATAAAATTCTAAA
Found at i:8183051 original size:31 final size:32
Alignment explanation
Indices: 8183003--8183062 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
8182993 TTAACCTAAT
*
8183003 TGCCACGTGGCATTTTT-CATTGGCCAAAACG
1 TGCCACGTGGCATTTTTCCATTGACCAAAACG
*
8183034 TGCCACGTGG-TTCTTTTCCATTGACCAAA
1 TGCCACGTGGCAT-TTTTCCATTGACCAAA
8183063 GTAGCCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 1 0.04
31 14 0.56
32 10 0.40
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (32 bp):
TGCCACGTGGCATTTTTCCATTGACCAAAACG
Found at i:8183062 original size:32 final size:31
Alignment explanation
Indices: 8183003--8183062 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
8182993 TTAACCTAAT
* *
8183003 TGCCACGTGGCATTTTTCATTGGCCAAAACG
1 TGCCACGTGGCATTTTCCATTGACCAAAACG
8183034 TGCCACGTGGTTC-TTTTCCATTGACCAAA
1 TGCCACGTGG--CATTTTCCATTGACCAAA
8183063 GTAGCCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
31 10 0.40
32 14 0.56
33 1 0.04
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (31 bp):
TGCCACGTGGCATTTTCCATTGACCAAAACG
Found at i:8183295 original size:29 final size:31
Alignment explanation
Indices: 8183240--8183298 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
8183230 ATCTCAAAAT
*
8183240 TATACATGAACTTTGATTTAGTGTGCAATTG
1 TATACATGAACTTTAATTTAGTGTGCAATTG
8183271 TATACATGAACTTTAATTT-G-GTGCAATT
1 TATACATGAACTTTAATTTAGTGTGCAATT
8183299 ATACACCTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.30
30 1 0.04
31 18 0.67
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (31 bp):
TATACATGAACTTTAATTTAGTGTGCAATTG
Found at i:8183309 original size:29 final size:28
Alignment explanation
Indices: 8183237--8183332 Score: 79
Period size: 31 Copynumber: 3.2 Consensus size: 28
8183227 TAAATCTCAA
*
8183237 AATTATACA-TGAACTTTGATTTAGTGTGC
1 AATTATACACTGAACTTTAATTT-G-GTGC
8183266 AATTGTATACA-TGAACTTTAATTTGGTGC
1 AA-T-TATACACTGAACTTTAATTTGGTGC
* *
8183295 AATTATACACCTGAAACTCTAATTGTGGTTC
1 AATTATACA-CTG-AACTTTAATT-TGGTGC
*
8183326 AAATATA
1 AATTATA
8183333 TATTTAAAAC
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
27 6 0.11
28 1 0.02
29 10 0.18
30 11 0.19
31 29 0.51
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (28 bp):
AATTATACACTGAACTTTAATTTGGTGC
Found at i:8183544 original size:29 final size:30
Alignment explanation
Indices: 8183491--8183549 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
8183481 GAATTGGATC
8183491 AAATCAAAATTTTATGTATAAAATTACATA
1 AAATCAAAATTTTATGTATAAAATTACATA
*
8183521 AAATCAAAA-TTTATGTATATAATTACATA
1 AAATCAAAATTTTATGTATAAAATTACATA
8183550 TTACACCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (30 bp):
AAATCAAAATTTTATGTATAAAATTACATA
Found at i:8184054 original size:20 final size:20
Alignment explanation
Indices: 8184016--8184063 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
8184006 AAAATTTATA
8184016 TTACCATATATATTGATATG
1 TTACCATATATATTGATATG
* *
8184036 TTACCGTATATATAT-ATATT
1 TTACCATATATAT-TGATATG
8184056 TTACCATA
1 TTACCATA
8184064 CAAAATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.46
Consensus pattern (20 bp):
TTACCATATATATTGATATG
Found at i:8187932 original size:7 final size:7
Alignment explanation
Indices: 8187920--8187954 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
8187910 TGCCCTTTTT
8187920 CTTCTTC
1 CTTCTTC
8187927 CTTCTTC
1 CTTCTTC
8187934 CTTCTTC
1 CTTCTTC
8187941 CTTC-TC
1 CTTCTTC
8187947 CTTTCTTC
1 C-TTCTTC
8187955 ACAATAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 3 0.12
7 21 0.81
8 2 0.08
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (7 bp):
CTTCTTC
Found at i:8189760 original size:36 final size:36
Alignment explanation
Indices: 8189720--8189802 Score: 123
Period size: 36 Copynumber: 2.3 Consensus size: 36
8189710 AGTCATTGAT
*
8189720 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
8189756 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
* *
8189792 TGATTATGTAG
1 CGATTAAGTAG
8189803 CTCTGAGCGC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
36 41 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:8190448 original size:36 final size:36
Alignment explanation
Indices: 8190381--8190457 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 36
8190371 AGTCATTGAT
*
8190381 CGATTAAGTAGATATGACAACTTGTTGGTAATCAAC
1 CGATTAAGTAGATATGACAACATGTTGGTAATCAAC
8190417 CGATTAAGTAGATATGA-ACACATGCTT-GTAATCAAC
1 CGATTAAGTAGATATGACA-ACATG-TTGGTAATCAAC
*
8190453 TGATT
1 CGATT
8190458 GTGTAGCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 1 0.03
36 34 0.92
37 2 0.05
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGACAACATGTTGGTAATCAAC
Found at i:8190755 original size:661 final size:661
Alignment explanation
Indices: 8189511--8191130 Score: 3026
Period size: 661 Copynumber: 2.5 Consensus size: 661
8189501 TAGCTGTTTA
*
8189511 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGTTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
*
8189576 TGTTTTTGATGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
* * *
8189641 AGTTATCTGACAGTTGATTGATCGGAGAAATGTGTTAGTAATTATTGGATAGAAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
*
8189706 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACTTGTTGGTAATCAACCGATTAAGTAGATAT
*
8189771 GAACACGTGCTTGTAATCAACTGATTATGTAGCTCTGAGCGCATGTTATTAAGTAACGGATTGAG
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCATGTTATTAAGTAACGGATTGAG
*
8189836 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAGGTACTGAGCACGTGTTAGCAATTAACATCAC
326 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
*
8189901 GTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
391 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
*
8189966 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
456 CTACCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
8190031 GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
521 GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
*
8190096 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTG
586 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTA
8190161 TTAGTAATTAT
651 TTAGTAATTAT
*
8190172 TGGAACTGTTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
8190237 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
8190302 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
*
8190367 TGTTAGTCATTGATCGATTAAGTAGATATGACAACTTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACTTGTTGGTAATCAACCGATTAAGTAGATAT
* *
8190432 GAACACATGCTTGTAATCAACTGATTGTGTAGCTTTGAGCGCATGTTATTAAGTAACGGATTGAG
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCATGTTATTAAGTAACGGATTGAG
*
8190497 TAGTTCCAAGTGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
326 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
8190562 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
391 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
8190627 CTACCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
456 CTACCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
* *
8190692 GATCTGGAAAGTTCGGGATGTATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
521 GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
*
8190757 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGCTTGATTGGTGAAACTTA
586 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTA
8190822 TTAGTAATTAT
651 TTAGTAATTAT
8190833 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
8190898 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
8190963 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
8191028 TGTTAGTCATTGATCGATTAAGTAGATATGACCA-TGTGTTGGTAATCAACCGATTAAGTAGATA
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACT-TGTTGGTAATCAACCGATTAAGTAGATA
* * *
8191092 TGAACACGTGCTTGTAATCAACTGTTTGAGTAGTTCTGA
260 TGAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGA
8191131 TCACGTGGTA
Statistics
Matches: 932, Mismatches: 26, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
660 1 0.00
661 931 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.37
Consensus pattern (661 bp):
TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
TGTTAGTCATTGATCGATTAAGTAGATATGACCACTTGTTGGTAATCAACCGATTAAGTAGATAT
GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCATGTTATTAAGTAACGGATTGAG
TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGTGTTAGCAATTAACATCAC
ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
CTACCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTA
TTAGTAATTAT
Found at i:8191137 original size:36 final size:36
Alignment explanation
Indices: 8191042--8191113 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
8191032 AGTCATTGAT
* *
8191042 CGATTAAGTAGATATGACCATGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
8191078 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
8191114 TGTTTGAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 31 0.94
37 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:8191145 original size:36 final size:36
Alignment explanation
Indices: 8191042--8191145 Score: 100
Period size: 36 Copynumber: 2.9 Consensus size: 36
8191032 AGTCATTGAT
* * * *
8191042 CGATTAAGTAGATATGACCATGTGTTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
*
8191078 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
* * * * * * *
8191114 TGTTTGAGTAGTTCTGATCACGTGGTAGTAAT
1 CGATTAAGTAGATATGAACACGTGCTAGTAAT
8191146 TGATGGATTA
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
Found at i:8191545 original size:36 final size:35
Alignment explanation
Indices: 8191476--8191578 Score: 95
Period size: 36 Copynumber: 3.0 Consensus size: 35
8191466 TGTAATCAAC
* *
8191476 TGATTGTGTAGCTCTGAGCACATGTTAGTAATTAA
1 TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
* * * *
8191511 TGGATTGAGTAGTTCTGAGCACTTTTTTGAAATTAA
1 T-GATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
* * *
8191547 TGATCGAGTA---CTGAGCACGTGTTAGCAATTAA
1 TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
8191579 CAGTTTGAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
32 18 0.32
35 9 0.16
36 29 0.52
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (35 bp):
TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
Found at i:8207555 original size:18 final size:19
Alignment explanation
Indices: 8207532--8207569 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
8207522 GGAAGCAAGC
*
8207532 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
8207550 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
8207569 A
1 A
8207570 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:8212664 original size:16 final size:16
Alignment explanation
Indices: 8212643--8212688 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
8212633 TTTGGTTCGC
8212643 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
*
8212659 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGA
* *
8212675 TGTAATGGAATAGA
1 TGTATTGGATTAGA
8212689 TGTGTAATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:8212693 original size:16 final size:16
Alignment explanation
Indices: 8212643--8212696 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
8212633 TTTGGTTCGC
* * *
8212643 TGTATTGGATTAGAGA
1 TGTAATGGAATAGAGG
* *
8212659 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
*
8212675 TGTAATGGAATAGATG
1 TGTAATGGAATAGAGG
8212691 TGTAAT
1 TGTAAT
8212697 AGCAAATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.37
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:8212741 original size:45 final size:44
Alignment explanation
Indices: 8212675--8212769 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 44
8212665 GGATTAGAGG
* * * *
8212675 TGTAATGGAATAGATGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTCAA
* **
8212720 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTCAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTCAA
8212764 TGTAAT
1 TGTAAT
8212770 AGAGGTGTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 17 0.40
45 26 0.60
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTCAA
Found at i:8212928 original size:18 final size:17
Alignment explanation
Indices: 8212907--8212941 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8212897 TTATTATTTA
*
8212907 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8212925 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8212942 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8212935 original size:28 final size:27
Alignment explanation
Indices: 8212865--8212937 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
8212855 TTTATTATCA
*
8212865 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
8212893 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
8212920 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
8212938 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:8213072 original size:18 final size:17
Alignment explanation
Indices: 8213051--8213085 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
8213041 TAATTATTGA
*
8213051 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
8213069 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
8213086 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:8213132 original size:59 final size:58
Alignment explanation
Indices: 8213069--8213251 Score: 153
Period size: 53 Copynumber: 3.1 Consensus size: 58
8213059 TAATTAAAAT
*
8213069 ATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATA
1 ATATAATTTAATAAAATTC-TAATAATTAATATTCTTATATGAATTTACTAAAATCATA
** ** * * *
8213128 ATATATGATACTGTAAAATATAAATTAAAATAA-TAATTATT-AAATAT-ATTTTAATTAAA--A
1 ATATA--AT--T-T--AATA-AAATTCTAATAATTAA-TATTCTTATATGAATTTACTAAAATCA
8213188 T-
57 TA
*
8213189 ATATAATTTAATAAAATTCTAATAATCAATATTCTTATATGAATTTACTAAAATCATA
1 ATATAATTTAATAAAATTCTAATAATTAATATTCTTATATGAATTTACTAAAATCATA
8213247 ATATA
1 ATATA
8213252 TGATACTATA
Statistics
Matches: 94, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
53 14 0.15
54 10 0.11
55 9 0.10
56 1 0.01
57 3 0.03
58 5 0.05
59 7 0.07
61 7 0.07
62 2 0.02
63 1 0.01
64 10 0.11
65 7 0.07
66 13 0.14
67 5 0.05
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (58 bp):
ATATAATTTAATAAAATTCTAATAATTAATATTCTTATATGAATTTACTAAAATCATA
Found at i:8213193 original size:18 final size:17
Alignment explanation
Indices: 8213153--8213205 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
8213143 AAATATAAAT
8213153 TAAAATA-ATAA-TT-A
1 TAAAATATATAATTTAA
*
8213167 TTAAATATAT--TTTAA
1 TAAAATATATAATTTAA
8213182 TTAAAATATATAATTTAA
1 -TAAAATATATAATTTAA
8213200 TAAAAT
1 TAAAAT
8213206 TCTAATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
14 8 0.26
15 3 0.10
16 9 0.29
17 6 0.19
18 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAAATATATAATTTAA
Found at i:8213257 original size:119 final size:120
Alignment explanation
Indices: 8213040--8213325 Score: 486
Period size: 119 Copynumber: 2.4 Consensus size: 120
8213030 ATATTTAAAC
* *
8213040 ATAATTATTGAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
1 ATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCT
* *
8213105 TATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAAAATA
66 TATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAATTAAAATA
8213160 ATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC-TAATAATCAATATTCT
1 ATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCT
* *
8213224 TATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAATTTGAAATA
66 TATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAATTAAAATA
*
8213279 ATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 A-TAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
8213326 TAAAATAATT
Statistics
Matches: 158, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
119 108 0.68
120 50 0.32
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.43
Consensus pattern (120 bp):
ATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCT
TATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAATTAAAATA
Found at i:8213263 original size:60 final size:59
Alignment explanation
Indices: 8213079--8213265 Score: 157
Period size: 60 Copynumber: 3.1 Consensus size: 59
8213069 ATATAATTTA
*
8213079 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTC-TAATAA-TAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
* * ** * * * ** * * * *
8213140 GTAAAATAT-AAATTAA-AATAATAATTAT-TAAATATATTTTAATTAAAATATATAAT-TT
1 ATAAAAT-TCTAA-TAATAAT-ATTCTTATATGAATTTACTAAAATCATAATATATGATACT
8213198 AATAAAATTCTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
1 -ATAAAATTCTAATAAT-AATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
8213259 ATAAAAT
1 ATAAAAT
8213266 ATAATTTGAA
Statistics
Matches: 91, Mismatches: 26, Indels: 19
0.67 0.19 0.14
Matches are distributed among these distances:
58 5 0.05
59 37 0.41
60 38 0.42
61 10 0.11
62 1 0.01
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (59 bp):
ATAAAATTCTAATAATAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
Found at i:8213322 original size:59 final size:58
Alignment explanation
Indices: 8213141--8213324 Score: 149
Period size: 59 Copynumber: 3.1 Consensus size: 58
8213131 TATGATACTG
* *
8213141 TAAAATATAAATTAAAATAA-TAATTATTAAATATATTTTAATTAAAATATATAATTTAA
1 TAAAATAT-AATTTAAATAATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAA
* * * ** * * * ** * * *
8213200 TAAAATTCTAATAATCAAT-ATTCTTATATGAATTTACTAAAATCATAATATATGATACT-A
1 TAAAA-TATAAT-TTAAATAATTAATAT-TAAATATATTTTAATTAAAATATATGAT-TTAA
8213260 TAAAATATAATTTGAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAA
1 TAAAATATAATTT-AAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAA
8213319 TAAAAT
1 TAAAAT
8213325 TTAAAATAAT
Statistics
Matches: 89, Mismatches: 28, Indels: 16
0.67 0.21 0.12
Matches are distributed among these distances:
58 2 0.02
59 48 0.54
60 38 0.43
61 1 0.01
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (58 bp):
TAAAATATAATTTAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAA
Found at i:8221484 original size:19 final size:20
Alignment explanation
Indices: 8221460--8221506 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8221450 GGATGAAAAG
8221460 AGAAAATAGAAACGTA-GAA
1 AGAAAATAGAAACGTAGGAA
**
8221479 AGAAAATA-AAATTTAGGAA
1 AGAAAATAGAAACGTAGGAA
8221498 AGAAAATAG
1 AGAAAATAG
8221507 GAGAGATGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.64, C:0.02, G:0.19, T:0.15
Consensus pattern (20 bp):
AGAAAATAGAAACGTAGGAA
Found at i:8226615 original size:223 final size:224
Alignment explanation
Indices: 8226226--8226669 Score: 791
Period size: 223 Copynumber: 2.0 Consensus size: 224
8226216 GACTTATTAA
* *
8226226 GTCAATATTCCTACAACACGAAACATCCTTAACTAGCTGGATTGCCAATAATACATTGATTCCAC
1 GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGATTGCCAACAATACATTGATTCCAC
8226291 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
66 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
*
8226356 TCGACAAAAAGAACCAATAAAACATTATTATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
131 TCGACAAAAAGAACCAATAAAACATTACTATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
8226421 ACCATCCAAGTGAATGACCTCAAAACCTT
196 ACCATCCAAGTGAATGACCTCAAAACCTT
* * *
8226450 GTCAATATTCCTACAACACAAAACATCTTTAACTAGTTGG-TTGCCAACAATGCATTGATTCCAC
1 GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGATTGCCAACAATACATTGATTCCAC
* *
8226514 CCTTTATGTCTCGACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
66 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
*
8226579 TCGACAAAAAGAACCAGTAAAACATTACTATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
131 TCGACAAAAAGAACCAATAAAACATTACTATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
*
8226644 ATCATCCAAGTGAATGACCTCAAAAC
196 ACCATCCAAGTGAATGACCTCAAAAC
8226670 ATTTATTATC
Statistics
Matches: 210, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
223 173 0.82
224 37 0.18
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.25
Consensus pattern (224 bp):
GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGATTGCCAACAATACATTGATTCCAC
CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
TCGACAAAAAGAACCAATAAAACATTACTATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
ACCATCCAAGTGAATGACCTCAAAACCTT
Found at i:8227537 original size:30 final size:29
Alignment explanation
Indices: 8227503--8227567 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
8227493 ATAAATTACA
* *
8227503 ATTTAGGCACTAAATTATTTGAAAATTTTC
1 ATTTAGGCACTAAACTA-TTCAAAATTTTC
* *
8227533 ATTTAAGTCACTAAACTATTCAAAATTTTT
1 ATTT-AGGCACTAAACTATTCAAAATTTTC
8227563 ATTTA
1 ATTTA
8227568 AGTCACTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 1 0.03
30 18 0.60
31 11 0.37
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (29 bp):
ATTTAGGCACTAAACTATTCAAAATTTTC
Found at i:8227568 original size:30 final size:31
Alignment explanation
Indices: 8227510--8227574 Score: 96
Period size: 30 Copynumber: 2.1 Consensus size: 31
8227500 ACAATTTAGG
* *
8227510 CACTAAATTATTTGAAAATTTTCATTTAAGT
1 CACTAAACTATTTCAAAATTTTCATTTAAGT
*
8227541 CACTAAACTA-TTCAAAATTTTTATTTAAGT
1 CACTAAACTATTTCAAAATTTTCATTTAAGT
8227571 CACT
1 CACT
8227575 GTTAATTAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (31 bp):
CACTAAACTATTTCAAAATTTTCATTTAAGT
Found at i:8227867 original size:45 final size:45
Alignment explanation
Indices: 8227806--8227891 Score: 172
Period size: 45 Copynumber: 1.9 Consensus size: 45
8227796 GCATTTAACC
8227806 TTTTTTTTCTTAATGATTTAAATTAAAACTTTTGAATAATTTCTT
1 TTTTTTTTCTTAATGATTTAAATTAAAACTTTTGAATAATTTCTT
8227851 TTTTTTTTCTTAATGATTTAAATTAAAACTTTTGAATAATT
1 TTTTTTTTCTTAATGATTTAAATTAAAACTTTTGAATAATT
8227892 CAATAATTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.57
Consensus pattern (45 bp):
TTTTTTTTCTTAATGATTTAAATTAAAACTTTTGAATAATTTCTT
Found at i:8234298 original size:26 final size:27
Alignment explanation
Indices: 8234249--8234299 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
8234239 TTTTATATTC
8234249 AGAAATTTTTTTATAAAAAGTTAATGT
1 AGAAATTTTTTTATAAAAAGTTAATGT
* *
8234276 AGAAGTTTTTTTATAGAAA-TTAAT
1 AGAAATTTTTTTATAAAAAGTTAAT
8234300 ATTCTTGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.43, C:0.00, G:0.12, T:0.45
Consensus pattern (27 bp):
AGAAATTTTTTTATAAAAAGTTAATGT
Found at i:8238894 original size:42 final size:41
Alignment explanation
Indices: 8238839--8238982 Score: 159
Period size: 42 Copynumber: 3.5 Consensus size: 41
8238829 TAACATATTT
*
8238839 ACCGGCACTTAGCCTGCTAGGATTATAGCCTGATTCATATC
1 ACCGGCACTTAGCCTGCTAGGATTATAGCCTGATTCAGATC
* * * *
8238880 ACCGGTCACGTAGCCTGCTAGGTTTATAACCTGATTCCGATC
1 ACCGG-CACTTAGCCTGCTAGGATTATAGCCTGATTCAGATC
* * *
8238922 ACCGGCACTTAGCCTGCTA-GACTTATAGTCTGA--AAAATTC
1 ACCGGCACTTAGCCTGCTAGGA-TTATAGCCTGATTCAGA-TC
*
8238962 ACCGGCATTTAGCCTGCTAGG
1 ACCGGCACTTAGCCTGCTAGG
8238983 CGCTTAGCCT
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
39 1 0.01
40 21 0.24
41 28 0.33
42 36 0.42
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (41 bp):
ACCGGCACTTAGCCTGCTAGGATTATAGCCTGATTCAGATC
Found at i:8238995 original size:40 final size:40
Alignment explanation
Indices: 8238920--8239002 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
8238910 CTGATTCCGA
* *
8238920 TCACCGGCACTTAGCCTGCTAGACTTATAGTCTGAAAAAT
1 TCACCGGCACTTAGCCTGCTAGACCTATAGCCTGAAAAAT
* * *
8238960 TCACCGGCATTTAGCCTGCTAGGCGCT-TAGCCTGAAAATT
1 TCACCGGCACTTAGCCTGCTAGAC-CTATAGCCTGAAAAAT
8239000 TCA
1 TCA
8239003 ATTTCACAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (40 bp):
TCACCGGCACTTAGCCTGCTAGACCTATAGCCTGAAAAAT
Found at i:8244716 original size:58 final size:58
Alignment explanation
Indices: 8244650--8244764 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
8244640 CCGAACAATC
8244650 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
1 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
*
8244708 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAGACTAT
1 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTAT
8244765 CTCTCTAATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (58 bp):
ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
Found at i:8250073 original size:21 final size:22
Alignment explanation
Indices: 8250049--8250093 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
8250039 AGAAAAAGAG
8250049 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
8250070 AAATCAAAAAGGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
8250092 AA
1 AA
8250094 CAATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:8250899 original size:24 final size:24
Alignment explanation
Indices: 8250854--8250899 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8250844 AATTTGCTAG
**
8250854 CCAAGATAGTTGATCCAAATGCCC
1 CCAAGATAGTTGAAACAAATGCCC
*
8250878 CCAAGATAGTTGAAACAGATGC
1 CCAAGATAGTTGAAACAAATGC
8250900 TTCTGAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (24 bp):
CCAAGATAGTTGAAACAAATGCCC
Done.