Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 28 of 211
Found at i:8252779 original size:35 final size:34
Alignment explanation
Indices: 8252692--8252966 Score: 310
Period size: 35 Copynumber: 8.1 Consensus size: 34
8252682 GTCCAAAAAG
* *
8252692 AAATAATACATGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAACA
* *
8252726 AAATGAT-GTGAATAGGAGAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAGAGATTCCCTGCAACA
*
8252759 AAATAATCCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAACA
* *
8252793 AAATGAT-GTGAACAGGAAAGATTCCCTGCAACA
1 AAATAATCGTGAACAGGAGAGATTCCCTGCAACA
*
8252826 AAATAATGTGTGAACAGGAGAGATTCCCTGCAACA
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAACA
*
8252861 AAATAATGCGTGAACAGGAGAGATTCCCTGCAA-G
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAACA
* * *
8252895 AAATGAT-GTGAACAGGAAAGATTCCTTGCAACA
1 AAATAATCGTGAACAGGAGAGATTCCCTGCAACA
* * * *
8252928 GAAGTAATGCGTGAACAGGAAATATTCCCTGCAAGA
1 -AAATAAT-CGTGAACAGGAGAGATTCCCTGCAACA
8252964 AAA
1 AAA
8252967 GACAAGTGAA
Statistics
Matches: 207, Mismatches: 24, Indels: 19
0.83 0.10 0.08
Matches are distributed among these distances:
32 67 0.32
33 12 0.06
34 23 0.11
35 82 0.40
36 23 0.11
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (34 bp):
AAATAATCGTGAACAGGAGAGATTCCCTGCAACA
Found at i:8252800 original size:67 final size:66
Alignment explanation
Indices: 8252692--8252966 Score: 311
Period size: 67 Copynumber: 4.0 Consensus size: 66
8252682 GTCCAAAAAG
* *
8252692 AAATAATACATGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAATAGGAGAGATTCCCTGCAA
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCCCTGCAA
8252757 CA
65 CA
*
8252759 AAATAATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCCCTGCAA
8252824 CA
65 CA
* * *
8252826 AAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAGAGATTCCCTG
1 AAATAAT-CGTGAACAGGAGAGATTCCCTGCAA-GAAATGAT--GTGAACAGGAGAGATTCCCTG
*
8252891 CAA-G
62 CAACA
* * * * * * *
8252895 AAATGAT-GTGAACAGGAAAGATTCCTTGCAACAGAAGTAATGCGTGAACAGGAAATATTCCCTG
1 AAATAATCGTGAACAGGAGAGATTCCCTGC-A-AGAAATGAT--GTGAACAGGAGAGATTCCCTG
*
8252959 CAAGA
62 CAACA
8252964 AAA
1 AAA
8252967 GACAAGTGAA
Statistics
Matches: 184, Mismatches: 18, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
67 114 0.62
68 37 0.20
69 10 0.05
70 23 0.12
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.19
Consensus pattern (66 bp):
AAATAATCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCCCTGCAAC
A
Found at i:8252875 original size:102 final size:102
Alignment explanation
Indices: 8252702--8252966 Score: 401
Period size: 102 Copynumber: 2.6 Consensus size: 102
8252692 AAATAATACA
* * * *
8252702 TGAACAGGAGAGATTCCCTGCAA-GAAATGA--TGTGAATAGGAGAGATTCCCTGCAACAAAATA
1 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
8252764 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
66 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
8252801 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
1 TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
*
8252866 ATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
66 ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
* * * * * *
8252903 TGAACAGGAAAGATTCCTTGCAACAGAAGTAATGCGTGAACAGGAAATATTCCCTGCAAGAAAA
1 TGAACAGGAAAGATTCCCTGCAACA-AAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAA
8252967 GACAAGTGAA
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
99 22 0.15
100 5 0.03
102 91 0.60
103 33 0.22
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (102 bp):
TGAACAGGAAAGATTCCCTGCAACAAAATAATGTGTGAACAGGAGAGATTCCCTGCAACAAAATA
ATCCGTGAACAGGAGAGATTCCCTGCAAGAAATGATG
Found at i:8253263 original size:5 final size:5
Alignment explanation
Indices: 8253253--8253308 Score: 112
Period size: 5 Copynumber: 11.2 Consensus size: 5
8253243 CTCAAATTGC
8253253 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
8253303 ATTAT A
1 ATTAT A
8253309 AAAGAAATAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:8254320 original size:27 final size:25
Alignment explanation
Indices: 8254264--8254364 Score: 81
Period size: 22 Copynumber: 4.3 Consensus size: 25
8254254 ACTTTAGCGC
* * **
8254264 GCTCTTTGATTATTAGCACGTTGGT
1 GCTCTCTGATTACTAGCACGTCAGT
8254289 GCTCTCTGATTACTAGCACGTCAGT
1 GCTCTCTGATTACTAGCACGTCAGT
*
8254314 GCTCTCTG-TT--TAGCACATCTA-T
1 GCTCTCTGATTACTAGCACGTC-AGT
* *
8254336 GCTCTTTG--TA-TAGCACTTCAGT
1 GCTCTCTGATTACTAGCACGTCAGT
8254358 GCTCTCT
1 GCTCTCT
8254365 ATTCATTAGT
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
21 2 0.03
22 31 0.48
23 1 0.02
24 2 0.03
25 29 0.45
ACGTcount: A:0.17, C:0.25, G:0.19, T:0.40
Consensus pattern (25 bp):
GCTCTCTGATTACTAGCACGTCAGT
Found at i:8258158 original size:18 final size:21
Alignment explanation
Indices: 8258137--8258175 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 21
8258127 TTATATTCTG
8258137 TTATTT-ATT-TAT-CTATTA
1 TTATTTGATTATATACTATTA
8258155 TTATTTGATTATATACTATTA
1 TTATTTGATTATATACTATTA
8258176 ATAAATAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 3 0.17
20 3 0.17
21 6 0.33
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (21 bp):
TTATTTGATTATATACTATTA
Found at i:8259031 original size:99 final size:97
Alignment explanation
Indices: 8258949--8259146 Score: 325
Period size: 99 Copynumber: 2.1 Consensus size: 97
8258939 GCAATTGTTT
8258949 TTTTTATCTTAT-TTATAATTCTCATATGTGATTA-T-TTAGTTTT-TC-ATATGTATTTTTTAA
1 TTTTTATCTTATCTTATAATTCTCATATGTGATTATTATTA-TTTTGTCTATATGTATTTTTTAA
8259009 AGTATGTATTTATGCCCTTTTTTTGAAAACTAA
65 AGTATGTATTTATGCCCTTTTTTTGAAAACTAA
8259042 TTTTTATCTTATCTTATAATTCTCATATGTGATTATTATTATTTTGTCTATATATGTATTTTTTA
1 TTTTTATCTTATCTTATAATTCTCATATGTGATTATTATTATTTTGTC--TATATGTATTTTTTA
8259107 AAGTATGTATTTATGCCCTTTTTTTGAAAACTAA
64 AAGTATGTATTTATGCCCTTTTTTTGAAAACTAA
8259141 TATTTT
1 T-TTTT
8259147 TCGCATACTT
Statistics
Matches: 97, Mismatches: 0, Indels: 9
0.92 0.00 0.08
Matches are distributed among these distances:
93 12 0.12
94 22 0.23
95 5 0.05
96 5 0.05
99 49 0.51
100 4 0.04
ACGTcount: A:0.27, C:0.09, G:0.08, T:0.57
Consensus pattern (97 bp):
TTTTTATCTTATCTTATAATTCTCATATGTGATTATTATTATTTTGTCTATATGTATTTTTTAAA
GTATGTATTTATGCCCTTTTTTTGAAAACTAA
Found at i:8262070 original size:50 final size:51
Alignment explanation
Indices: 8261988--8262089 Score: 197
Period size: 50 Copynumber: 2.0 Consensus size: 51
8261978 AACTCCTGAG
8261988 TATCATGAATGGTGGGACTAGAAGGATTAATGATAATACACCTAAGTTAAA
1 TATCATGAATGGTGGGACTAGAAGGATTAATGATAATACACCTAAGTTAAA
8262039 TATCATGAATGGTGGG-CTAGAAGGATTAATGATAATACACCTAAGTTAAA
1 TATCATGAATGGTGGGACTAGAAGGATTAATGATAATACACCTAAGTTAAA
8262089 T
1 T
8262090 CAGGAAGACA
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 35 0.69
51 16 0.31
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (51 bp):
TATCATGAATGGTGGGACTAGAAGGATTAATGATAATACACCTAAGTTAAA
Found at i:8263149 original size:24 final size:24
Alignment explanation
Indices: 8263120--8263165 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8263110 TAGAACAATC
* *
8263120 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
8263144 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
8263166 AAAAATGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:8271395 original size:45 final size:45
Alignment explanation
Indices: 8271114--8271445 Score: 158
Period size: 44 Copynumber: 7.6 Consensus size: 45
8271104 ACAGATCGAG
* * * * * * * *
8271114 TCTTAGCTCCCTAAAGTTGTAGTG-GAGCAGACTAAATAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGATTAAAGACGGAAA
* * * *
8271158 TCTTATC-CTCCTGAAGTTGCAGTGAG-GCAAACTGAAGATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGATTAAAGACGG-AAA
* * * *
8271203 TCTTATCTCCCTGAAATTACAGTG-GAGCAGATTGAAG-CCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGATTAAAGACGGA-AA
* * *
8271247 TCTTATCTCCTTGAAGTTGCAGTG-GAGCGGATTACAA-CCTTGG--A
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGATTA-AAGAC--GGAAA
* *** *** *
8271291 TCTTATCTCTCTGAAGTTGCA--GAGAGCAGA-T-CCCA-TTTAG
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGATTAAAGACGGAAA
* *
8271331 TCTTATC-CTCCTGAAGTTGCAGTGAG-GTAGATTGAAGACGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGAGAGCAGATTAAAGACGG-AAA
* * *
8271376 TCTTATCTCCCTGAAGTTGCATTG-GAGCAGATTAAAGTCGGTAA
1 TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGATTAAAGACGGAAA
* **
8271420 TCCTATCTTGCTGAAGTTGCAGTGAG
1 TCTTATCTCCCTGAAGTTGCAGTGAG
8271446 TGGATTAAAA
Statistics
Matches: 216, Mismatches: 48, Indels: 47
0.69 0.15 0.15
Matches are distributed among these distances:
39 1 0.00
40 18 0.08
41 4 0.02
42 6 0.03
43 9 0.04
44 105 0.49
45 70 0.32
46 2 0.01
47 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (45 bp):
TCTTATCTCCCTGAAGTTGCAGTGAGAGCAGATTAAAGACGGAAA
Found at i:8271774 original size:128 final size:128
Alignment explanation
Indices: 8271574--8271847 Score: 431
Period size: 128 Copynumber: 2.1 Consensus size: 128
8271564 ATGGCAAATT
* *
8271574 TTATCTCCCTGAAGTTGCAGTTGAACAGATTAAAGCTAATAATCCTATCTTCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCAATAATCCTATCTTCCTGAAGTTGCAGT
* * *
8271639 GGAGTGGATTAAAACCTTGGACCTTATCTCTCTAAAGTTGCAGAGAGCATATCGTATTTAGTC
66 GGAGTGGATTAAAACCTTGGACCTTATCTCTCTAAAGTTGCAAAGAGCAGATCGTATTAAGTC
* * * *
8271702 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCTTGAAGTTGTAGT
1 TTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCAATAATCCTATCTTCCTGAAGTTGCAGT
* * * *
8271767 GGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGTAAAGAGCAGGTCGTATTAAGTC
66 GGAGTGGATTAAAACCTTGGACCTTATCTCTCTAAAGTTGCAAAGAGCAGATCGTATTAAGTC
8271830 TTATCTCCCTGAAGTTGC
1 TTATCTCCCTGAAGTTGC
8271848 GCCAGGAGTA
Statistics
Matches: 133, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
128 133 1.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33
Consensus pattern (128 bp):
TTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCCAATAATCCTATCTTCCTGAAGTTGCAGT
GGAGTGGATTAAAACCTTGGACCTTATCTCTCTAAAGTTGCAAAGAGCAGATCGTATTAAGTC
Found at i:8271808 original size:44 final size:44
Alignment explanation
Indices: 8271626--8271806 Score: 133
Period size: 44 Copynumber: 4.2 Consensus size: 44
8271616 TCCTATCTTC
*
8271626 CTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGACCTTATCTCT
1 CTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
* * * *** * * *
8271670 CTAAAGTTGCA---GAGAGCATATCGTA-TTTAG-TCTTATCTCC
1 CTGAAGTTGCAGTGGAGTGGAT-TAAAACCTTGGATCTTATCTCT
** * * * *
8271710 CTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT-AATCCTATCT-T
1 CTGAAGTTGCAGTGGAGTGGATTAAAACC-TTGGATCTTATCTCT
*
8271753 CTTGAAGTTGTAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
1 C-TGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
8271798 CTGAAGTTG
1 CTGAAGTTG
8271807 TAAAGAGCAG
Statistics
Matches: 97, Mismatches: 30, Indels: 20
0.66 0.20 0.14
Matches are distributed among these distances:
40 18 0.19
41 9 0.09
42 3 0.03
43 7 0.07
44 58 0.60
45 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (44 bp):
CTGAAGTTGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCT
Found at i:8272120 original size:10 final size:10
Alignment explanation
Indices: 8272105--8272129 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8272095 AAAAACAGAT
8272105 AATAATAATA
1 AATAATAATA
8272115 AATAATAATA
1 AATAATAATA
8272125 AATAA
1 AATAA
8272130 AGGTCCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
AATAATAATA
Found at i:8272584 original size:18 final size:18
Alignment explanation
Indices: 8272547--8272585 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8272537 TTATATTCTG
*
8272547 TTATTTATTTATCTATTA
1 TTATTTATTTATCTACTA
* *
8272565 TTATTTGTTTATTTACTA
1 TTATTTATTTATCTACTA
8272583 TTA
1 TTA
8272586 ATAAATAAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.67
Consensus pattern (18 bp):
TTATTTATTTATCTACTA
Found at i:8276151 original size:56 final size:56
Alignment explanation
Indices: 8276084--8276196 Score: 208
Period size: 56 Copynumber: 2.0 Consensus size: 56
8276074 CACTAAGCAC
*
8276084 TGAGCAATGTTTAACAAGAAACTCAATTTCTTCAAAGGGTTTCTACAGTAATACTT
1 TGAGCAATGTTTAACAAGAAACTCAATTTCTTCAAAGGGTTTCTACAATAATACTT
*
8276140 TGAGCAATGTTTAACAAGAAACTCAATTTCTTCAAAGGGTTTCTGCAATAATACTT
1 TGAGCAATGTTTAACAAGAAACTCAATTTCTTCAAAGGGTTTCTACAATAATACTT
8276196 T
1 T
8276197 ATAGAATAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (56 bp):
TGAGCAATGTTTAACAAGAAACTCAATTTCTTCAAAGGGTTTCTACAATAATACTT
Found at i:8276558 original size:40 final size:39
Alignment explanation
Indices: 8276475--8276561 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 39
8276465 GGAACACTAT
* **
8276475 AAATATTTGAAAATATTCCAACAAGCTCCCCTTATTTTT
1 AAATATTTGAAAATATTCCAACAAGCTCCCCTCATTTCA
* * *
8276514 AAATATTTGAAAATGTTTCAACAATCTTCCCC-CATGTTCA
1 AAATATTTGAAAATATTCCAACAAGC-TCCCCTCAT-TTCA
8276554 AAATATTT
1 AAATATTT
8276562 TAGATTTTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
39 25 0.62
40 15 0.38
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.38
Consensus pattern (39 bp):
AAATATTTGAAAATATTCCAACAAGCTCCCCTCATTTCA
Found at i:8283833 original size:5 final size:5
Alignment explanation
Indices: 8283825--8283850 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8283815 GAGATGGAAT
8283825 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
8283851 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:8292110 original size:18 final size:19
Alignment explanation
Indices: 8292087--8292125 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
8292077 ATTCGCCCAT
* *
8292087 TACAGTATCA-ATATTCAG
1 TACAGTAACAGATATACAG
8292105 TACAGTAACAGATATACAG
1 TACAGTAACAGATATACAG
8292124 TA
1 TA
8292126 TCAAATCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (19 bp):
TACAGTAACAGATATACAG
Found at i:8295044 original size:17 final size:17
Alignment explanation
Indices: 8295024--8295057 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8295014 ATTTCTGGGT
*
8295024 TTTTTTAATTTTAAAAA
1 TTTTCTAATTTTAAAAA
*
8295041 TTTTCTATTTTTAAAAA
1 TTTTCTAATTTTAAAAA
8295058 AAATGAGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTCTAATTTTAAAAA
Found at i:8300511 original size:24 final size:24
Alignment explanation
Indices: 8300419--8300513 Score: 84
Period size: 25 Copynumber: 3.8 Consensus size: 24
8300409 AATTCATATT
*
8300419 CGAGAATGCTCATATGAGCACATAAA
1 CGAGAA-GCTCATATGAGC-CATTAA
* *
8300445 CGAAAAGCTCATGTGAGCCATGTAA
1 CGAGAAGCTCATATGAGCCAT-TAA
* *
8300470 CGAGAAACTCCA-AAGAGCCATTAA
1 CGAGAAGCT-CATATGAGCCATTAA
* *
8300494 CGGGAAGCTCATACGAGCCA
1 CGAGAAGCTCATATGAGCCA
8300514 ATAATAGGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
23 2 0.04
24 20 0.36
25 27 0.48
26 7 0.12
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (24 bp):
CGAGAAGCTCATATGAGCCATTAA
Found at i:8302218 original size:14 final size:13
Alignment explanation
Indices: 8302195--8302225 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
8302185 TTGAGGCAGG
8302195 TAAATTTCGAGGC
1 TAAATTTCGAGGC
8302208 TAAAGTTTCGAGGC
1 TAAA-TTTCGAGGC
8302222 TAAA
1 TAAA
8302226 ATTTATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (13 bp):
TAAATTTCGAGGC
Found at i:8302735 original size:5 final size:5
Alignment explanation
Indices: 8302725--8302749 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8302715 TCACTTAACC
8302725 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
8302750 ATTAACTCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:8304577 original size:29 final size:29
Alignment explanation
Indices: 8304539--8304606 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
8304529 ACCAATAAAA
8304539 GCCGATTTTTTTCAAAATTTACCGAAATGG
1 GCCGA-TTTTTTCAAAATTTACCGAAATGG
* ** *
8304569 GCCGATTTTTTGATTATTTACCGGAATGG
1 GCCGATTTTTTCAAAATTTACCGAAATGG
*
8304598 TCC-ATTTTT
1 GCCGATTTTT
8304607 CAAGAAATCG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 6 0.18
29 22 0.67
30 5 0.15
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.43
Consensus pattern (29 bp):
GCCGATTTTTTCAAAATTTACCGAAATGG
Found at i:8304778 original size:22 final size:22
Alignment explanation
Indices: 8304750--8304797 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
8304740 CTCTCTAATC
8304750 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
8304772 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
8304794 CTCT
1 CTCT
8304798 GAAACCCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:8304821 original size:40 final size:40
Alignment explanation
Indices: 8304775--8304863 Score: 151
Period size: 40 Copynumber: 2.2 Consensus size: 40
8304765 CAAAATTCTC
* *
8304775 TCAATTTCCTTCCAAAATTCTCTGAAACCCATATTTAATT
1 TCAATTTCCTTCAAAAATTCTCTAAAACCCATATTTAATT
*
8304815 TCAATTTCCTTCAAAAATTCTCTAAAATCCATATTTAATT
1 TCAATTTCCTTCAAAAATTCTCTAAAACCCATATTTAATT
8304855 TCAATTTCC
1 TCAATTTCC
8304864 CCTCAATTTC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.34, C:0.24, G:0.01, T:0.42
Consensus pattern (40 bp):
TCAATTTCCTTCAAAAATTCTCTAAAACCCATATTTAATT
Found at i:8305999 original size:7 final size:7
Alignment explanation
Indices: 8305987--8306020 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
8305977 AGTCGATTGA
8305987 TATTTAG
1 TATTTAG
8305994 TATTTAG
1 TATTTAG
8306001 TATTTAG
1 TATTTAG
8306008 TA-TTATG
1 TATTTA-G
8306015 TATTTA
1 TATTTA
8306021 ACTAATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 3 0.12
7 19 0.76
8 3 0.12
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:8307205 original size:29 final size:29
Alignment explanation
Indices: 8307166--8307247 Score: 137
Period size: 29 Copynumber: 2.8 Consensus size: 29
8307156 TAACACAATT
* *
8307166 AACTAACTTAATTATAAACCCTAACCCTA
1 AACTAATTTAATTAAAAACCCTAACCCTA
*
8307195 ACCTAATTTAATTAAAAACCCTAACCCTA
1 AACTAATTTAATTAAAAACCCTAACCCTA
8307224 AACTAATTTAATTAAAAACCCTAA
1 AACTAATTTAATTAAAAACCCTAA
8307248 TTTAATTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (29 bp):
AACTAATTTAATTAAAAACCCTAACCCTA
Found at i:8307273 original size:43 final size:43
Alignment explanation
Indices: 8307224--8307391 Score: 138
Period size: 43 Copynumber: 3.6 Consensus size: 43
8307214 CCTAACCCTA
8307224 AACTAATTTAATTAAAAACCCTAATTTAATTTTACTAACAATT
1 AACTAATTTAATTAAAAACCCTAATTTAATTTTACTAACAATT
** * * * *
8307267 AACTAATTTAATTAAAAATCCTAACCCTAACCTAATTTAATTAAAAACCCT
1 AACTAATTTAATT--AAA----AACCCTAATTTAATTTTACTAACAA--TT
8307318 AACCCTAAACTAATTTAATTAAAAACCCTAATTTAATTTTACTAACAATT
1 AA--CT-----AATTTAATTAAAAACCCTAATTTAATTTTACTAACAATT
*
8307368 AACTAACTTAATTAAAAACCCTAA
1 AACTAATTTAATTAAAAACCCTAA
8307392 CCCTAACCTA
Statistics
Matches: 97, Mismatches: 13, Indels: 30
0.69 0.09 0.21
Matches are distributed among these distances:
43 32 0.33
45 3 0.03
48 2 0.02
49 20 0.21
50 3 0.03
51 3 0.03
52 20 0.21
53 2 0.02
56 3 0.03
58 9 0.09
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (43 bp):
AACTAATTTAATTAAAAACCCTAATTTAATTTTACTAACAATT
Found at i:8307291 original size:29 final size:28
Alignment explanation
Indices: 8307265--8307637 Score: 178
Period size: 29 Copynumber: 13.9 Consensus size: 28
8307255 TTACTAACAA
*
8307265 TTAACTAATTTAATTAAAAATCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
*
8307293 CTAACCTAATTTAATTAAAAACCCTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
*
8307323 TAAACTAATTTAATTAAAAACCCTAA--
1 TTAACTAATTTAATTAAAAACCCTAACC
* * * *
8307349 TT---TAATTTTACTAACAA--TTAA-C
1 TTAACTAATTTAATTAAAAACCCTAACC
** **
8307371 -TAACTTAA-TTAAAAACCCTAACCCTAA-C
1 TTAAC-TAATTTAATTA--AAAACCCTAACC
8307399 ----CTAATTTAATTAAAAACCCTAA-C
1 TTAACTAATTTAATTAAAAACCCTAACC
8307422 TCTAACCTAATTTAATTAAAAACCCTAACC
1 T-TAA-CTAATTTAATTAAAAACCCTAACC
* * *
8307452 CTAACCTGATTTAATTAAAAACTCTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
*
8307482 TAAACTAATTTAATTAAAAACCCTAA--
1 TTAACTAATTTAATTAAAAACCCTAACC
* * * *
8307508 TT---TAATTTTACTAACAA--TTAA-C
1 TTAACTAATTTAATTAAAAACCCTAACC
** **
8307530 -TAACTTAA-TTAAAAACCCTAACCCTAA-C
1 TTAAC-TAATTTAATTA--AAAACCCTAACC
8307558 ----CTAATTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
*
8307582 CTAACCTAATTTAATTAAAAACCCTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
*
8307612 TAAACTAATTTAATTAAAAACCCTAA
1 TTAACTAATTTAATTAAAAACCCTAA
8307638 TATAATTTTA
Statistics
Matches: 265, Mismatches: 43, Indels: 73
0.70 0.11 0.19
Matches are distributed among these distances:
21 8 0.03
23 41 0.15
24 15 0.06
25 18 0.07
26 6 0.02
28 11 0.04
29 153 0.58
30 13 0.05
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (28 bp):
TTAACTAATTTAATTAAAAACCCTAACC
Found at i:8307310 original size:101 final size:101
Alignment explanation
Indices: 8307133--8307449 Score: 571
Period size: 101 Copynumber: 3.1 Consensus size: 101
8307123 TTTGATGTCA
*
8307133 TAAAAACCCTAATTTAATTTTACTAACACAATTAACTAACTTAATTATAAACCCTAACCCTAACC
1 TAAAAACCCTAATTTAATTTTACT-A-ACAATTAACTAACTTAATTAAAAACCCTAACCCTAACC
8307198 TAATTTAATTAAAAACCCTAACCCTAAACTAATTTAAT
64 TAATTTAATTAAAAACCCTAACCCTAAACTAATTTAAT
* *
8307236 TAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAATCCTAACCCTAACCTA
1 TAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAACCTA
8307301 ATTTAATTAAAAACCCTAACCCTAAACTAATTTAAT
66 ATTTAATTAAAAACCCTAACCCTAAACTAATTTAAT
8307337 TAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAACCTA
1 TAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAACCTA
* *
8307402 ATTTAATTAAAAACCCTAACTCTAACCTAATTTAAT
66 ATTTAATTAAAAACCCTAACCCTAAACTAATTTAAT
8307438 TAAAAACCCTAA
1 TAAAAACCCTAA
8307450 CCCTAACCTG
Statistics
Matches: 207, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
101 182 0.88
102 1 0.00
103 24 0.12
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.32
Consensus pattern (101 bp):
TAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAACCTA
ATTTAATTAAAAACCCTAACCCTAAACTAATTTAAT
Found at i:8307319 original size:130 final size:130
Alignment explanation
Indices: 8307168--8308381 Score: 1042
Period size: 130 Copynumber: 9.6 Consensus size: 130
8307158 ACACAATTAA
* *
8307168 CTAACTTAATTATAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
*
8307233 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAATCCTAACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAACCCTAACCCTAAC
* **
8307298 CTAATTTAATTAAAAACCCTAACCCTAAACTAATTTAATTAAAAACCCTAA-TTTAATTTTACTA
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA----ACTA
* * * ***** **
8307362 A--CAATTAACTAA-CTTAA-TTAAAAACCCTAAC-CCTAACCTAATTTAATTAAAAACCCTAAC
62 ATTTAATTAA-AAACCCTAATTTAATTTTACTAACAATTAA-CTAATTTAATTAAAAACCCTAAC
*
8307422 TCTAAC
125 CCTAAC
* *
8307428 CTAATTTAATTAAAAACCCTAACCCTAACCTGATTTAATTAAAAACTCTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
*
8307493 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAACCCTAACCCTAAC
8307558 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
* *
8307623 AATTAAAAACCCTAATATAATTTTACTAACAATTAACTAACTTAATT--AAA----AACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAACCCTAACCCTAAC
* * *
8307682 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAATCCTAACCCTAACCTGATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
* ** * * ** *****
8307747 AATTAAAAACTCTAACCCTAA----ACTAATTTAATTAA-AAACCCTAATTTAATTTTACTAACA
66 AATTAAAAACCCTAA-TTTAATTTTACTAA--CAATTAACTAA-TTTAA-TTAAAAACCCTAAC-
**
8307807 ATTAA-
125 CCTAAC
* * *
8307812 CTAACTTAATTAAAAACCCTAACCCTGACCTAATTTAATTAAAACCCCTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
*
8307877 AATT-AAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAACCCTAACCCTAAC
** * *
8307941 CTAATTTAATTAAAAACATTAACCCTAAACTAATTTAATTAAAAACCCTAA---T---TTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
* * * ** ** *
8308000 TACTAACAATTA-ACTAATTTAATTAAAAACCCTAAC-CCTAACCTAATTTAAGTAAAAACCCTA
66 AATTAA-AA--ACCCTAATTTAATT--TTA--CTAACAATTAA-CTAATTTAATTAAAAACCCTA
8308063 ACCCTAAC
123 ACCCTAAC
* * * * *
8308071 TTAATTTAATTAAAAATCCTAACTCTAAACTAATTTAATTAAAAACCCTAA---T---TTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
* * ** ** ** *
8308130 TACTAAAAATTAACTAATTTAATTAAAAACCCTAAC-CCTAACCTAATTTAATTAAAAACCTTAA
66 AATTAAAAA--CCCTAATTTAATT--TTA--CTAACAATTAA-CTAATTTAATTAAAAACCCTAA
*
8308194 CCCTAAA
124 CCCTAAC
* ** * *
8308201 CTAATTTAATTAAAAACCCTAA---T---TTAA-TT--TT----A--CTAACAATTAACTAACTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
**
8308251 AATTAAAAACCCT-----AA---CCCTAAC------CTAATTTAATTAAAAACCCTAACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAACCCTAACCCTAAC
*
8308302 CTAATTTAATTAAAAACCCTAACCCTAACCTAACTTAATTAAAAACCCTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
8308367 AATTAAAAACCCTAA
66 AATTAAAAACCCTAA
8308382 CCATTAACAC
Statistics
Matches: 907, Mismatches: 112, Indels: 142
0.78 0.10 0.12
Matches are distributed among these distances:
101 49 0.05
104 1 0.00
107 8 0.01
108 2 0.00
110 2 0.00
114 3 0.00
115 4 0.00
116 27 0.03
117 1 0.00
118 1 0.00
119 2 0.00
121 19 0.02
122 2 0.00
123 20 0.02
124 91 0.10
125 5 0.01
126 12 0.01
127 8 0.01
128 12 0.01
129 84 0.09
130 521 0.57
131 21 0.02
132 7 0.01
133 5 0.01
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (130 bp):
CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAACCCTAACCCTAAC
Found at i:8307522 original size:101 final size:100
Alignment explanation
Indices: 8307428--8308323 Score: 494
Period size: 101 Copynumber: 8.8 Consensus size: 100
8307418 TAACTCTAAC
*
8307428 CTAATTTAATTAAAAACCCTAACCCTAACCTGATTTAATTAAAAACTCTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAAACTAATTT
8307493 AATTAAAAACCCTAATTTAATTTTACTAACAATTAA
66 AATTAAAAACCCTAATTTAATTTTACTAAC-ATTAA
* * *
8307529 CTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAAACTAATTT
** ** * * *
8307594 AATTAAAAACCCTAACCCTAAACTAATTTA-ATTAA
66 AATTAAAAACCCTAA-TTTAATTTTACTAACATTAA
* ** ***** ** * * * * **
8307629 -AAACCCTAATATAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAA-CCTAATTTAA-
1 CTAA-TTTAAT-TAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAAACTAAT
** * * *
8307691 TTAA--AAACCCTAACCCTAACCTAATTTAATTAAAAATCCTAA
64 TTAATTAAA----AACCCTAATTTAATTTTACT-AACAT--TAA
* * * **
8307733 CCCTAACCTGATTTAATTAAAAACTCTAACCCTAAACTAATTTAATTAAAAACCCTAA-TTTAAT
1 --CT-A----ATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAA-
* * * ***** * * *
8307797 TTTACTAA--CAATTAACTAA-CTTAA-TTAAAAACCCTAACCCTGAC
58 ---ACTAATTTAATTAA-AAACCCTAATTTAATTTTACTAA-CATTAA
* * * **
8307841 CTAATTTAATTAAAACCCCTAACCCTAAACTAATTTAATT-AAAACCCTAA-TTTAATTTTACTA
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAA----ACTA
* * * ***** **
8307904 A--CAATTAACTAA-CTTAA-TTAAAAACCCTAACCCTAA
62 ATTTAATTAA-AAACCCTAATTTAATTTTACTAACATTAA
** * **
8307940 CCTAATTTAATTAAAAACATTAACCCTAAACTAATTTAATT--AAA----AACCCTAATTTAATT
1 -CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAAACTAATT
* * * ** **
8307999 TTACTAACAATTA-ACTAATTTAATTAAAAACCCTAACCCTAA
65 TAATTAA-AA--ACCCTAATTTAATT--TTA--CTAACATTAA
* * *
8308041 CCTAATTTAAGTAAAAACCCTAACCCTAACTTAATTTAATTAAAAA-TCCTAACTCTAAACTAAT
1 -CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACT-CTAACCCTAAACTAAT
*
8308105 TTAATTAAAAACCCTAATTTAATTTTACTAAAAATTAA
64 TTAATTAAAAACCCTAATTTAATTTTACT-AACATTAA
8308143 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAAC-CTTAACCCTAAACTAATT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTC-TAACCCTAAACTAATT
8308207 TAATTAAAAACCCTAATTTAATTTTACTAACAATTAA
65 TAATTAAAAACCCTAATTTAATTTTACTAAC-ATTAA
* * *
8308244 CTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAAACTAATTT
8308309 AATTAAAAACCCTAA
66 AATTAAAAACCCTAA
8308324 CCCTAACCTA
Statistics
Matches: 643, Mismatches: 102, Indels: 100
0.76 0.12 0.12
Matches are distributed among these distances:
92 3 0.00
94 6 0.01
95 2 0.00
96 7 0.01
97 7 0.01
99 13 0.02
100 121 0.19
101 366 0.57
102 15 0.02
103 4 0.01
104 4 0.01
105 12 0.02
106 4 0.01
107 17 0.03
108 2 0.00
109 2 0.00
110 40 0.06
111 8 0.01
112 3 0.00
113 2 0.00
114 3 0.00
115 2 0.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.32
Consensus pattern (100 bp):
CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACTCTAACCCTAAACTAATTT
AATTAAAAACCCTAATTTAATTTTACTAACATTAA
Found at i:8307705 original size:29 final size:29
Alignment explanation
Indices: 8307673--8307790 Score: 200
Period size: 29 Copynumber: 4.1 Consensus size: 29
8307663 CTTAATTAAA
8307673 AACCCTAACCTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
*
8307702 AACCCTAACCTAATTTAATTAAAAATCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
* *
8307731 AACCCTAACCTGATTTAATTAAAAACTCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
*
8307760 AACCCTAAACTAATTTAATTAAAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT
8307789 AA
1 AA
8307791 TTTAATTTTA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 82 1.00
ACGTcount: A:0.46, C:0.25, G:0.01, T:0.29
Consensus pattern (29 bp):
AACCCTAACCTAATTTAATTAAAAACCCT
Found at i:8307767 original size:35 final size:32
Alignment explanation
Indices: 8307543--8307784 Score: 153
Period size: 29 Copynumber: 8.0 Consensus size: 32
8307533 CTTAATTAAA
8307543 AACCCTAACCCTAACCTAATTTAATT--AAA-
1 AACCCTAACCCTAACCTAATTTAATTAAAAAT
8307572 AACCCTAACCCTAACCTAATTTAATT--AAA-
1 AACCCTAACCCTAACCTAATTTAATTAAAAAT
*
8307601 AACCCTAACCCTAAACTAATTTAATT--AAA-
1 AACCCTAACCCTAACCTAATTTAATTAAAAAT
** ** * ** *
8307630 AACCCTAA-TATAATTTTACTAACAATTAACTAACTT
1 AACCCTAACCCTAA-CCTAAT-TTAATTAA--AA-AT
****
8307666 AATTAAAAACCCTAACCTAATTTAATT--AAA-
1 AA-CCCTAACCCTAACCTAATTTAATTAAAAAT
8307696 AACCCTAACCCTAACCTAATTTAATTAAAAAT
1 AACCCTAACCCTAACCTAATTTAATTAAAAAT
*
8307728 ---CCTAACCCTAACCTGATTTAATT--AAA-
1 AACCCTAACCCTAACCTAATTTAATTAAAAAT
* *
8307754 AACTCTAACCCTAAACTAATTTAATTAAAAA
1 AACCCTAACCCTAACCTAATTTAATTAAAAA
8307785 CCCTAATTTA
Statistics
Matches: 166, Mismatches: 29, Indels: 34
0.72 0.13 0.15
Matches are distributed among these distances:
27 3 0.02
28 3 0.02
29 130 0.78
30 6 0.04
31 6 0.04
32 2 0.01
34 2 0.01
36 6 0.04
37 5 0.03
38 3 0.02
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (32 bp):
AACCCTAACCCTAACCTAATTTAATTAAAAAT
Found at i:8307834 original size:29 final size:29
Alignment explanation
Indices: 8307810--8307890 Score: 119
Period size: 29 Copynumber: 2.8 Consensus size: 29
8307800 ACTAACAATT
* *
8307810 AACTAACTTAATTAAAAACCCTAACCCTG
1 AACTAATTTAATTAAAAACCCTAACCCTA
* *
8307839 ACCTAATTTAATTAAAACCCCTAACCCTA
1 AACTAATTTAATTAAAAACCCTAACCCTA
8307868 AACTAATTTAATT-AAAACCCTAA
1 AACTAATTTAATTAAAAACCCTAA
8307891 TTTAATTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 9 0.20
29 37 0.80
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (29 bp):
AACTAATTTAATTAAAAACCCTAACCCTA
Found at i:8307933 original size:29 final size:28
Alignment explanation
Indices: 8307908--8308389 Score: 204
Period size: 29 Copynumber: 18.2 Consensus size: 28
8307898 TTACTAACAA
*
8307908 TTAACTAACTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
* **
8307936 CTAACCTAATTTAATTAAAAACATTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
*
8307966 TAAACTAATTTAATTAAAAACCCTAA--
1 TTAACTAATTTAATTAAAAACCCTAACC
* * * *
8307992 TT---TAATTTTACTAACAA--TTAA-C
1 TTAACTAATTTAATTAAAAACCCTAACC
* ** **
8308014 -TAATTTAA-TTAAAAACCCTAACCCTAACC
1 TTAA-CTAATTTAATTA--AAAACCCTAACC
*
8308043 -TAA-T---TTAAGTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
* *
8308066 CTAACTTAATTTAATTAAAAATCCTAACTC
1 TTAAC-TAATTTAATTAAAAACCCTAAC-C
*
8308096 TAAACTAATTTAATTAAAAACCCTAA--
1 TTAACTAATTTAATTAAAAACCCTAACC
* *
8308122 TT---TAATTTTACTAAAAA--------
1 TTAACTAATTTAATTAAAAACCCTAACC
8308139 TTAACTAATTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
* *
8308167 CTAACCTAATTTAATTAAAAACCTTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
*
8308197 TAAACTAATTTAATTAAAAACCCTAA--
1 TTAACTAATTTAATTAAAAACCCTAACC
* * * *
8308223 TT---TAATTTTACTAACAA--TTAA-C
1 TTAACTAATTTAATTAAAAACCCTAACC
** **
8308245 -TAACTTAA-TTAAAAACCCTAACCCTAA-C
1 TTAAC-TAATTTAATTA--AAAACCCTAACC
8308273 ----CTAATTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
*
8308297 CTAACCTAATTTAATTAAAAACCCTAACC
1 TTAA-CTAATTTAATTAAAAACCCTAACC
* *
8308326 CTAACCTAACTTAATTAAAAACCCTAACCC
1 TTAA-CTAATTTAATTAAAAACCCTAA-CC
*
8308356 TAAACTAATTTAATTAAAAACCCTAACC
1 TTAACTAATTTAATTAAAAACCCTAACC
8308384 ATTAAC
1 -TTAAC
8308390 ACAATTTTTG
Statistics
Matches: 346, Mismatches: 58, Indels: 99
0.69 0.12 0.20
Matches are distributed among these distances:
17 2 0.01
20 13 0.04
21 8 0.02
23 55 0.16
24 15 0.04
25 17 0.05
26 8 0.02
27 1 0.00
28 15 0.04
29 196 0.57
30 16 0.05
ACGTcount: A:0.47, C:0.22, G:0.00, T:0.31
Consensus pattern (28 bp):
TTAACTAATTTAATTAAAAACCCTAACC
Found at i:8308150 original size:43 final size:43
Alignment explanation
Indices: 8308098--8308265 Score: 156
Period size: 43 Copynumber: 3.6 Consensus size: 43
8308088 CCTAACTCTA
8308098 AACTAATTTAATTAAAAACCCTAATTTAATTTTACTAAAAATT
1 AACTAATTTAATTAAAAACCCTAATTTAATTTTACTAAAAATT
* * *
8308141 AACTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCTTAACCCT
1 AACTAATTTAATTAAAAACCCTAA---T---TTAATTTTACTAAAAA---T-----T
*
8308198 AAACTAATTTAATTAAAAACCCTAATTTAATTTTACTAACAATT
1 -AACTAATTTAATTAAAAACCCTAATTTAATTTTACTAAAAATT
*
8308242 AACTAACTTAATTAAAAACCCTAA
1 AACTAATTTAATTAAAAACCCTAA
8308266 CCCTAACCTA
Statistics
Matches: 102, Mismatches: 8, Indels: 30
0.73 0.06 0.21
Matches are distributed among these distances:
43 47 0.46
44 1 0.01
46 1 0.01
49 14 0.14
52 13 0.13
55 1 0.01
57 1 0.01
58 24 0.24
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.34
Consensus pattern (43 bp):
AACTAATTTAATTAAAAACCCTAATTTAATTTTACTAAAAATT
Found at i:8308165 original size:159 final size:159
Alignment explanation
Indices: 8307269--8308383 Score: 787
Period size: 159 Copynumber: 7.2 Consensus size: 159
8307259 TAACAATTAA
*
8307269 CTAATTTAATTAAAAATCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
8307334 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
*
8307399 CTAATTTAATTAAAAACCCTAACTCTAAC
131 CTAATTTAATTAAAAACCCTAACCCTAAC
* *
8307428 CTAATTTAATTAAAAACCCTAACCCTAACCTGATTTAATTAAAAACTCTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
8307493 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
8307558 CTAATTTAATTAAAAACCCTAACCCTAAC
131 CTAATTTAATTAAAAACCCTAACCCTAAC
*
8307587 CTAATTTAATTAAAAACCCTAACCCTAAACTAATTTAATTAAAAACCCTAATATAATTTTACTAA
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCC-----T-A----AC---
* * * ** ** * *
8307652 CAATTAACTAACTTAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATT
53 C-CTAAACTAATTTAATTAAAAACCCTAATTTAA-TT--TTACTAA--C-AA--TTAA-CTAACT
* * * *
8307717 TAATTAAAAATCCTAACCCTAACCTGATTTAATTAAAAACTCTAACCCTAAA
108 TAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAC
* ** * *
8307769 CTAATTTAATTAAAAACCCTAA---T---TTAA-TT--TT----A--CTAACAATTAACTAACTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
* * * * *
8307819 AATTAAAAACCCTAACCCTGACCTAATTTAATTAA-AACCCCTAACCCTAAAC-TAATT--TAA-
66 AATTAAAAACCCTAA---T---TTAATTTTACTAACAA---TTAA--CT-AACTTAATTAAAAAC
* ** **
8307879 -TTAA----AACCCTAATTTAATT--TTA--CTAACAATTAA-
119 CCTAACCCTAA-CCTAATTTAATTAAAAACCCTAAC-CCTAAC
* **
8307912 CTAACTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACATTAACCCTAAACTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
*
8307977 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAATTTAATTAAAAACCCTAACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
*
8308042 CTAATTTAAGTAAAAACCCTAACCCTAAC
131 CTAATTTAATTAAAAACCCTAACCCTAAC
* * * * *
8308071 TTAATTTAATTAAAAATCCTAACTCTAAACTAATTTAATTAAAAACCCTAA---T---TTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
* * ** ** ** * *
8308130 TACTAAAAATTAACTAATTTAATTAAAAACCCTAAC-CCTAACCTAATTTAATTAAAAACCTTAA
66 AATTAAAAA--CCCTAATTTAATT--TTA--CTAACAATTAA-CTAACTTAATTAAAAACCCTAA
*
8308194 CCCTAAACTAATTTAATTAAAAACCCTAA---T---
124 CCCTAACCTAATTTAATTAAAAACCCTAACCCTAAC
* ** * * *
8308224 TTAA-TT--TTACTAA--C-AA--TTAA-CTAACTTAATTAAAAACCCTAACCCTAACCTAATTT
1 CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
** *
8308280 AATTAAAAACCC-----TAA---CCCTAAC------CTAATTTAATTAAAAACCCTAACCCTAAC
66 AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
* *
8308331 CTAACTTAATTAAAAACCCTAACCCTAAA
131 CTAATTTAATTAAAAACCCTAACCCTAAC
8308360 CTAATTTAATTAAAAACCCTAACC
1 CTAATTTAATTAAAAACCCTAACC
8308384 ATTAACACAA
Statistics
Matches: 776, Mismatches: 89, Indels: 197
0.73 0.08 0.19
Matches are distributed among these distances:
130 48 0.06
133 1 0.00
136 8 0.01
137 2 0.00
139 5 0.01
141 1 0.00
142 2 0.00
143 29 0.04
144 24 0.03
145 4 0.01
146 3 0.00
147 16 0.02
148 9 0.01
149 3 0.00
150 28 0.04
152 21 0.03
153 52 0.07
154 8 0.01
155 25 0.03
156 9 0.01
157 4 0.01
158 36 0.05
159 306 0.39
161 1 0.00
162 1 0.00
164 1 0.00
165 1 0.00
167 1 0.00
169 3 0.00
172 1 0.00
173 29 0.04
174 2 0.00
175 2 0.00
176 8 0.01
178 1 0.00
179 3 0.00
181 3 0.00
182 75 0.10
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.31
Consensus pattern (159 bp):
CTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAAACTAATTT
AATTAAAAACCCTAATTTAATTTTACTAACAATTAACTAACTTAATTAAAAACCCTAACCCTAAC
CTAATTTAATTAAAAACCCTAACCCTAAC
Found at i:8308460 original size:56 final size:56
Alignment explanation
Indices: 8308378--8308530 Score: 247
Period size: 56 Copynumber: 2.8 Consensus size: 56
8308368 ATTAAAAACC
*
8308378 CTAACCATTAACACAA-TTTTTGGACTTAATAATTTTACATAATTTGATAATTTTA
1 CTAACCATTAACACAATTTTTTGGACTTAATAATTTTACATAATTTGATAATATTA
* *
8308433 CTAACCATTAACACAATTTTTTGGACTTAATAGTTTTACATATTTTGATAATATTA
1 CTAACCATTAACACAATTTTTTGGACTTAATAATTTTACATAATTTGATAATATTA
*
8308489 CTAACCATTAACAAAATTTTTTTGG-CTTAATAATTTTACATA
1 CTAACCATTAACACAA-TTTTTTGGACTTAATAATTTTACATA
8308531 CTTTTATGTT
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
55 16 0.18
56 67 0.74
57 8 0.09
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (56 bp):
CTAACCATTAACACAATTTTTTGGACTTAATAATTTTACATAATTTGATAATATTA
Found at i:8308565 original size:48 final size:51
Alignment explanation
Indices: 8308508--8308612 Score: 153
Period size: 48 Copynumber: 2.1 Consensus size: 51
8308498 AACAAAATTT
* *
8308508 TTTTGGCTTAATAATTTTACATAC-TTT-T-ATGTTAGATTTGGTAAAATG
1 TTTTAGCTTAATAATTTTACATACTTTTATAATGTTAGATTTGGTAAAATA
8308556 TTTTAGCTTAATAATTTTACATACTTTTACATAATGTTAGATTTGGTAAAATA
1 TTTTAGCTTAATAATTTTACATACTTTT--ATAATGTTAGATTTGGTAAAATA
8308609 TTTT
1 TTTT
8308613 GTCTGGAACT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
48 23 0.46
49 3 0.06
52 1 0.02
53 23 0.46
ACGTcount: A:0.31, C:0.07, G:0.11, T:0.50
Consensus pattern (51 bp):
TTTTAGCTTAATAATTTTACATACTTTTATAATGTTAGATTTGGTAAAATA
Found at i:8311935 original size:126 final size:124
Alignment explanation
Indices: 8311705--8311949 Score: 364
Period size: 126 Copynumber: 2.0 Consensus size: 124
8311695 AACTTGCTAT
* * * **
8311705 TGTAACAAAATCGCGTCCACAAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGA
1 TGTAACAAAACCGCGTCCACAAGGGCACAATTTCACAATTTCTACTCAAATAGCATCCTCATAGA
** * * *
8311770 AGTGATTTTATACTATTTGCTTAGAAACGTCAAAAAAAATTTTATTTTTTACATGATCTAC
66 AGCAATTTTATACTATTTGCTCAGAAACATCAAAAAAAA--TTATTTCTTACATGATCTAC
* *
8311831 TGTAGCAAAACCGCGTCCACGAGGGCACAATTTCACAATTTCTACTCAAATAGCATCCTCATAGA
1 TGTAACAAAACCGCGTCCACAAGGGCACAATTTCACAATTTCTACTCAAATAGCATCCTCATAGA
8311896 AGCAATTTTATACTATTTGCTCAGAAACATCAAAAAAAATTATTTCTTACATGA
66 AGCAATTTTATACTATTTGCTCAGAAACATCAAAAAAAATTATTTCTTACATGA
8311950 AAATCGCGTC
Statistics
Matches: 107, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
124 14 0.13
126 93 0.87
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (124 bp):
TGTAACAAAACCGCGTCCACAAGGGCACAATTTCACAATTTCTACTCAAATAGCATCCTCATAGA
AGCAATTTTATACTATTTGCTCAGAAACATCAAAAAAAATTATTTCTTACATGATCTAC
Found at i:8312009 original size:32 final size:32
Alignment explanation
Indices: 8311968--8312029 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
8311958 TCCACGAAGG
*
8311968 CTGAACCCTAAACCCTAAAAGCCAAAAAAAGC
1 CTGAACCCTAAACCCTAAAAACCAAAAAAAGC
8312000 CTGAACCCTAAACCCTAAAAACCAAAAAAA
1 CTGAACCCTAAACCCTAAAAACCAAAAAAA
8312030 CCAAACGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.53, C:0.31, G:0.06, T:0.10
Consensus pattern (32 bp):
CTGAACCCTAAACCCTAAAAACCAAAAAAAGC
Found at i:8313344 original size:13 final size:13
Alignment explanation
Indices: 8313312--8313345 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
8313302 ATATCGACTA
8313312 AATTTTT-TATAT
1 AATTTTTATATAT
*
8313324 ATTTTTTATATAT
1 AATTTTTATATAT
8313337 AATTTTTAT
1 AATTTTTAT
8313346 CTGTCAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
AATTTTTATATAT
Found at i:8313652 original size:68 final size:67
Alignment explanation
Indices: 8313570--8313708 Score: 167
Period size: 66 Copynumber: 2.1 Consensus size: 67
8313560 TATATTTACT
* * *
8313570 AAAAATAATTATATTTGAAATAATTCATTGATTTTATAA-ATTAG-ATTTACCATACTCACAATG
1 AAAAATAATAATATTTAAAATAATT-A-T--TTTTATAATATTAGAATTTACAATACTCACAATG
8313633 TAAGTG
62 TAAGTG
* * *
8313639 AAAAA-AATAATATTTAAAATAATTATTTTTATAATATTTGAATTTATAATACTCACAATGTACG
1 AAAAATAATAATATTTAAAATAATTATTTTTATAATATTAGAATTTACAATACTCACAATGTAAG
8313703 TG
66 TG
8313705 AAAA
1 AAAA
8313709 GTTAAATATT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
64 8 0.13
65 4 0.06
66 27 0.44
67 1 0.02
68 17 0.27
69 5 0.08
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.39
Consensus pattern (67 bp):
AAAAATAATAATATTTAAAATAATTATTTTTATAATATTAGAATTTACAATACTCACAATGTAAG
TG
Found at i:8315984 original size:125 final size:125
Alignment explanation
Indices: 8315691--8315990 Score: 406
Period size: 126 Copynumber: 2.4 Consensus size: 125
8315681 TTGTTAATTT
* * *
8315691 AAAGAAGCTCCCACGTGGA-AGCGCTTTTGCTACAGTGGCTCTTCAGAAAATAATTTCGAGTAGA
1 AAAGAAGCTCCCACGTGGACA-CGCTTTTGCTACAGTAGCTCCTGA-AAAATAATTTCGAGTAGA
* *
8315755 CGTTTCTGAGCAAACAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
64 CATTTCTGAGCAAACAATGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * ** * *
8315817 AAAAAAGCTTCCACGTTTACGCGCTTTTGCTACAGTAGCTCCTGAAATAATAATTTTGAGTAGAC
1 AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCCTGAAA-AATAATTTCGAGTAGAC
* *
8315882 ATTTCTGAGCAAACAATGTCAGAAACGCTTTAA-TAGGATGCTTTGTCAGCAGAAGTACTG
65 ATTTCTGAGCAAACAATGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
* * * *
8315942 AAAGAAGCTCCCACGTGGACATGCTTTTACTATAGTATCTCCTGAAAAA
1 AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCCTGAAAAA
8315991 GGCTCCCACG
Statistics
Matches: 150, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
124 2 0.01
125 66 0.44
126 82 0.55
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (125 bp):
AAAGAAGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCCTGAAAAATAATTTCGAGTAGACA
TTTCTGAGCAAACAATGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTG
Found at i:8319341 original size:21 final size:21
Alignment explanation
Indices: 8319303--8319342 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8319293 TCGTCCAGCT
* **
8319303 TCCGGTGGGGATTGTGGTTGC
1 TCCGGTAGGGATCCTGGTTGC
8319324 TCCGGTAGGGATCCTGGTT
1 TCCGGTAGGGATCCTGGTT
8319343 CCTCTAGTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.17, G:0.42, T:0.33
Consensus pattern (21 bp):
TCCGGTAGGGATCCTGGTTGC
Found at i:8321507 original size:11 final size:12
Alignment explanation
Indices: 8321491--8321543 Score: 58
Period size: 11 Copynumber: 4.7 Consensus size: 12
8321481 TTAAATAGGG
8321491 ATTTGAGA-GAA
1 ATTTGAGAGGAA
*
8321502 ATTTGAAAGGAA
1 ATTTGAGAGGAA
*
8321514 A-TTGAGAGCAA
1 ATTTGAGAGGAA
8321525 A-TTGAGAGGAA
1 ATTTGAGAGGAA
*
8321536 ATTAGAGA
1 ATTTGAGA
8321544 AAGGATTTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
11 26 0.74
12 9 0.26
ACGTcount: A:0.47, C:0.02, G:0.28, T:0.23
Consensus pattern (12 bp):
ATTTGAGAGGAA
Found at i:8321521 original size:22 final size:21
Alignment explanation
Indices: 8321493--8321545 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 21
8321483 AAATAGGGAT
8321493 TTGAGAGAAATTTGAAAGGAAA
1 TTGAGAGAAA-TTGAAAGGAAA
*
8321515 TTGAGAGCAAATTGAGAGGAAA
1 TTGAGAG-AAATTGAAAGGAAA
8321537 TT-AGAGAAA
1 TTGAGAGAAA
8321546 GGATTTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.10
21 4 0.14
22 19 0.66
23 3 0.10
ACGTcount: A:0.49, C:0.02, G:0.28, T:0.21
Consensus pattern (21 bp):
TTGAGAGAAATTGAAAGGAAA
Found at i:8325003 original size:24 final size:23
Alignment explanation
Indices: 8324968--8325012 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
8324958 AAAGCCTAAT
8324968 ATTTTTAGAAAAATTACTAGGTAGA
1 ATTTTTAGAAAAA-TAC-AGGTAGA
8324993 ATTTTTA-AAAAATACAGGTA
1 ATTTTTAGAAAAATACAGGTA
8325013 TATTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 5 0.25
23 3 0.15
24 5 0.25
25 7 0.35
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (23 bp):
ATTTTTAGAAAAATACAGGTAGA
Found at i:8330955 original size:48 final size:48
Alignment explanation
Indices: 8330884--8330979 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
8330874 CAAACACAAA
8330884 AGTTTGCCTCTAAGATCCTAAGTGAATCAGTATATCCTATGACCCCCC
1 AGTTTGCCTCTAAGATCCTAAGTGAATCAGTATATCCTATGACCCCCC
*
8330932 AGTTTGTCTCTAAGATCCTAAGTGAATCAGTATATCCTATGACCCCCC
1 AGTTTGCCTCTAAGATCCTAAGTGAATCAGTATATCCTATGACCCCCC
8330980 CCCCAAAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (48 bp):
AGTTTGCCTCTAAGATCCTAAGTGAATCAGTATATCCTATGACCCCCC
Found at i:8333425 original size:11 final size:11
Alignment explanation
Indices: 8333401--8333449 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
8333391 GCTTTTATGT
*
8333401 TTTAA-TATAT
1 TTTAACTATAA
8333411 TTTAACTATAA
1 TTTAACTATAA
8333422 TTTAAC-ATAA
1 TTTAACTATAA
8333432 TTATAACATATAA
1 TT-TAAC-TATAA
8333445 TTTAA
1 TTTAA
8333450 TAATTTAACA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
10 11 0.32
11 14 0.41
12 3 0.09
13 6 0.18
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (11 bp):
TTTAACTATAA
Found at i:8333454 original size:21 final size:20
Alignment explanation
Indices: 8333401--8333459 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 20
8333391 GCTTTTATGT
8333401 TTTAATATATTTTAAC-TATAA
1 TTTAATA-A-TTTAACATATAA
8333422 TTTAACATAATTATAACATATAA
1 TTT-A-ATAATT-TAACATATAA
8333445 TTTAATAATTTAACA
1 TTTAATAATTTAACA
8333460 AGCACCAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
20 5 0.15
21 11 0.32
22 7 0.21
23 11 0.32
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTAATAATTTAACATATAA
Found at i:8337282 original size:25 final size:26
Alignment explanation
Indices: 8337225--8337300 Score: 93
Period size: 25 Copynumber: 3.0 Consensus size: 26
8337215 AGCATCACAC
* **
8337225 TATATGGCTCTAACGAGCTTCCCGA-
1 TATATGGCTCTCATAAGCTTCCCGAT
*
8337250 TATTTGGCTCTCATAAGCTTCCCGAT
1 TATATGGCTCTCATAAGCTTCCCGAT
*
8337276 TA-ATGGCTCTCCTAAGCTTCCCGAT
1 TATATGGCTCTCATAAGCTTCCCGAT
8337301 ATTCGATGGA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
25 42 0.95
26 2 0.05
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (26 bp):
TATATGGCTCTCATAAGCTTCCCGAT
Found at i:8345257 original size:14 final size:14
Alignment explanation
Indices: 8345203--8345263 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
8345193 TTGTTTTCTT
8345203 TAGTTCATAGCTAG
1 TAGTTCATAGCTAG
*
8345217 TAGTT-A-AGTTAG
1 TAGTTCATAGCTAG
* **
8345229 TTACTATTGTAGCTAG
1 -TAGT-TCATAGCTAG
8345245 TAGTTCATAGCTAG
1 TAGTTCATAGCTAG
8345259 TAGTT
1 TAGTT
8345264 AAGTTAGTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
12 5 0.14
13 4 0.11
14 19 0.53
15 3 0.08
16 5 0.14
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (14 bp):
TAGTTCATAGCTAG
Found at i:8345268 original size:19 final size:19
Alignment explanation
Indices: 8345204--8345268 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 19
8345194 TGTTTTCTTT
8345204 AGTTCATAGCTAGTAGTTA
1 AGTTCATAGCTAGTAGTTA
*
8345223 AGTT-AGTTA-CTATTGTAGCTA
1 AGTTCA--TAGCTA--GTAGTTA
8345244 GTAGTTCATAGCTAGTAGTTA
1 --AGTTCATAGCTAGTAGTTA
8345265 AGTT
1 AGTT
8345269 AGTTACTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 16
0.67 0.04 0.30
Matches are distributed among these distances:
18 1 0.03
19 11 0.31
20 2 0.06
21 12 0.33
22 2 0.06
23 7 0.19
24 1 0.03
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (19 bp):
AGTTCATAGCTAGTAGTTA
Found at i:8349261 original size:3 final size:3
Alignment explanation
Indices: 8349255--8349315 Score: 104
Period size: 3 Copynumber: 20.3 Consensus size: 3
8349245 AAGTAGTAGT
* *
8349255 AGA AGA AGA AGA ATA AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
8349303 AGA AGA AGA AGA A
1 AGA AGA AGA AGA A
8349316 ATGGAGATGC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:8350094 original size:29 final size:31
Alignment explanation
Indices: 8350033--8350095 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
8350023 GATGGAGAAG
*
8350033 AAGTATAAACATATTGGGCCATTTACTCAAA
1 AAGTATAAAAATATTGGGCCATTTACTCAAA
* *
8350064 AAGTA-AAAAATATTGGGTCATTTA-TTAAA
1 AAGTATAAAAATATTGGGCCATTTACTCAAA
8350093 AAG
1 AAG
8350096 AGAAAAGGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 7 0.24
30 17 0.59
31 5 0.17
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (31 bp):
AAGTATAAAAATATTGGGCCATTTACTCAAA
Found at i:8354522 original size:76 final size:76
Alignment explanation
Indices: 8354396--8354584 Score: 236
Period size: 76 Copynumber: 2.5 Consensus size: 76
8354386 TGCTGGGCAC
* * * * * *
8354396 ACATTCGTCAGTTTATCCAACTAGTGCTGGGTGCAACTATCGTTGGTTTATCTAACTAGAACTTG
1 ACATTTGTCGGTTCATCCAACTAGCGCTGGGTGCAAATATCGTTGGTTTATCCAACTAGAAC-TG
8354461 -ACTCACTAAAT
65 CACTCACTAAAT
* * * *
8354472 ACATTTGTTGGTTCATCCAACTAGCGCTAGGTGCAAATATCGTTGGTTTATCCAATTAGAGCTGC
1 ACATTTGTCGGTTCATCCAACTAGCGCTGGGTGCAAATATCGTTGGTTTATCCAACTAGAACTGC
*
8354537 GCTCACTAAAT
66 ACTCACTAAAT
* * *
8354548 ACATTTGTCGGTTTATCCGACTAGCGCTGGGCGCAAA
1 ACATTTGTCGGTTCATCCAACTAGCGCTGGGTGCAAA
8354585 CTCTAACCGT
Statistics
Matches: 96, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
75 2 0.02
76 94 0.98
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (76 bp):
ACATTTGTCGGTTCATCCAACTAGCGCTGGGTGCAAATATCGTTGGTTTATCCAACTAGAACTGC
ACTCACTAAAT
Found at i:8375788 original size:20 final size:19
Alignment explanation
Indices: 8375740--8375793 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
8375730 CATTTCAGAA
8375740 CAGTAATTCATCAA-CATTT
1 CAGTAATT-ATCAATCATTT
* *
8375759 AACTAA-TATCATATCATTT
1 CAGTAATTATCA-ATCATTT
8375778 CAGTAATTATCAATCA
1 CAGTAATTATCAATCA
8375794 ATCATATTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
17 4 0.14
18 2 0.07
19 17 0.61
20 5 0.18
ACGTcount: A:0.41, C:0.19, G:0.04, T:0.37
Consensus pattern (19 bp):
CAGTAATTATCAATCATTT
Found at i:8376739 original size:23 final size:26
Alignment explanation
Indices: 8376681--8376741 Score: 76
Period size: 23 Copynumber: 2.5 Consensus size: 26
8376671 GAACTATGAT
8376681 CGGTAAGCTCATTCCGAGCTGAAGAA
1 CGGTAAGCTCATTCCGAGCTGAAGAA
*
8376707 CAGTAAGCTC-TAT-CGAGCTG-A-AA
1 CGGTAAGCTCAT-TCCGAGCTGAAGAA
8376730 CGGTAAGCTCAT
1 CGGTAAGCTCAT
8376742 AAGAGTTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 11 0.35
24 2 0.06
25 8 0.26
26 10 0.32
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.21
Consensus pattern (26 bp):
CGGTAAGCTCATTCCGAGCTGAAGAA
Found at i:8377988 original size:11 final size:11
Alignment explanation
Indices: 8377972--8378047 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
8377962 CTTAATCACT
8377972 TTAATATTAAA
1 TTAATATTAAA
8377983 TTAATA--AAA
1 TTAATATTAAA
*
8377992 -TATTATTAAA
1 TTAATATTAAA
*
8378002 ATAAGTATTAAA
1 TTAA-TATTAAA
8378014 TTAA-ATTTAACA
1 TTAATA-TTAA-A
8378026 TTAAATTATTAAA
1 TT-AA-TATTAAA
*
8378039 ATAATATTA
1 TTAATATTA
8378048 TTTTTGGAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 4 0.08
11 17 0.33
12 15 0.29
13 4 0.08
14 4 0.08
15 1 0.02
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:8392769 original size:46 final size:46
Alignment explanation
Indices: 8392702--8392886 Score: 298
Period size: 46 Copynumber: 4.0 Consensus size: 46
8392692 ACATTGCCAT
* * **
8392702 AACTCAGTATGGCTTTCTTCACGGAATTACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* *
8392748 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAT
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
* *
8392794 AACTCAGTATGGTTTTCTTCACCGAAACATCATACCTACATTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
8392840 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
8392886 A
1 A
8392887 CTTTGCCATA
Statistics
Matches: 128, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACCGAAACACCATACCTACTTTTCAC
Found at i:8394141 original size:17 final size:17
Alignment explanation
Indices: 8394109--8394158 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
8394099 TAAATTCTTT
*
8394109 TTAAATCGCAAAAATTCA
1 TTAAATCAC-AAAATTCA
8394127 TTAAATCACAAAATTCA
1 TTAAATCACAAAATTCA
* *
8394144 CTAATTCA-AAAATTC
1 TTAAATCACAAAATTC
8394159 TTCTAAATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 7 0.24
17 14 0.48
18 8 0.28
ACGTcount: A:0.50, C:0.18, G:0.02, T:0.30
Consensus pattern (17 bp):
TTAAATCACAAAATTCA
Found at i:8399550 original size:16 final size:17
Alignment explanation
Indices: 8399531--8399563 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8399521 TTTAAAAACT
8399531 AATA-TTTTTTTATTCA
1 AATAGTTTTTTTATTCA
*
8399547 AATAGTTTTTTTTTTCA
1 AATAGTTTTTTTATTCA
8399564 TCCTCATCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (17 bp):
AATAGTTTTTTTATTCA
Found at i:8403069 original size:27 final size:27
Alignment explanation
Indices: 8403025--8403078 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
8403015 ATTCAAATTG
* *
8403025 CTACTCCTACTAATAAGCTAACAACTC
1 CTACTCCTACAAACAAGCTAACAACTC
8403052 CTACTCCTACAAACAAGCTAACAACTC
1 CTACTCCTACAAACAAGCTAACAACTC
8403079 TCCTAGTGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.39, C:0.35, G:0.04, T:0.22
Consensus pattern (27 bp):
CTACTCCTACAAACAAGCTAACAACTC
Found at i:8403282 original size:17 final size:17
Alignment explanation
Indices: 8403230--8403282 Score: 52
Period size: 19 Copynumber: 3.0 Consensus size: 17
8403220 TATGGAAACA
* *
8403230 TAATCTTCGAGGATATG
1 TAATCTTAGAAGATATG
* *
8403247 CAATCGTAGATATGATATG
1 TAATCTTAGA-A-GATATG
8403266 TAATCTTAGAAGATATG
1 TAATCTTAGAAGATATG
8403283 ATTTTGTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
17 13 0.46
18 1 0.04
19 14 0.50
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.34
Consensus pattern (17 bp):
TAATCTTAGAAGATATG
Found at i:8403282 original size:22 final size:21
Alignment explanation
Indices: 8403254--8403311 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
8403244 ATGCAATCGT
* *
8403254 AGATATGATATGTAATCTTAG
1 AGATATGATTTGTAATATTAG
8403275 AAGATATGATTTTGTAATATTAG
1 -AGATATGA-TTTGTAATATTAG
*
8403298 AGATTTGATTTGTA
1 AGATATGATTTGTA
8403312 GATAACTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 15 0.47
23 11 0.34
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (21 bp):
AGATATGATTTGTAATATTAG
Found at i:8409886 original size:50 final size:50
Alignment explanation
Indices: 8409832--8409944 Score: 122
Period size: 50 Copynumber: 2.3 Consensus size: 50
8409822 TATCCCATAT
* ** * *
8409832 ATGGTCTTACATGATAGTTCTCATATAGGTGTCCATC-CCATGTCCCAGAC
1 ATGGTCTTACATGAGACCTCTCATATAGATG-CCAACGCCATGTCCCAGAC
* * *
8409882 ATGGTCTTACGA-GGGACCTCTCATCTCGATGCCAACGCCATGTCCCAGAC
1 ATGGTCTTAC-ATGAGACCTCTCATATAGATGCCAACGCCATGTCCCAGAC
8409932 ATGGTCTTACATG
1 ATGGTCTTACATG
8409945 GGATTTCTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
49 5 0.10
50 46 0.88
51 1 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACATGAGACCTCTCATATAGATGCCAACGCCATGTCCCAGAC
Found at i:8410324 original size:30 final size:30
Alignment explanation
Indices: 8410290--8410347 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8410280 CCTTAACTCG
8410290 AACTTTTACAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* * * *
8410320 AACTTTTGCATATTTACACTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
8410348 AAAGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:8412074 original size:29 final size:30
Alignment explanation
Indices: 8412015--8412072 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8412005 TCCGAGCCTT
*
8412015 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
8412045 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
8412073 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:8412302 original size:13 final size:13
Alignment explanation
Indices: 8412284--8412315 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8412274 TTTCCAGCAA
8412284 TTATGAATTTATT
1 TTATGAATTTATT
8412297 TTATGAATTTATT
1 TTATGAATTTATT
*
8412310 TGATGA
1 TTATGA
8412316 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:8412523 original size:50 final size:50
Alignment explanation
Indices: 8412410--8412651 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
8412400 ATTTGGGTAA
* * *
8412410 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
8412466 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8412516 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8412566 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
8412616 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
8412652 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:8412599 original size:100 final size:103
Alignment explanation
Indices: 8412410--8412659 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
8412400 ATTTGGGTAA
8412410 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
8412475 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
8412516 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
8412578 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
8412616 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8412660 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:8419666 original size:29 final size:30
Alignment explanation
Indices: 8419607--8419664 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8419597 TCCGAGCCTT
*
8419607 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
8419637 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
8419665 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:8419894 original size:13 final size:13
Alignment explanation
Indices: 8419876--8419907 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8419866 TTTCCAGCAA
8419876 TTATGAATTTATT
1 TTATGAATTTATT
8419889 TTATGAATTTATT
1 TTATGAATTTATT
*
8419902 TGATGA
1 TTATGA
8419908 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:8420115 original size:50 final size:50
Alignment explanation
Indices: 8420002--8420243 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
8419992 ATTTGGGTAA
* * *
8420002 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
8420058 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8420108 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
8420158 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
8420208 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
8420244 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:8420191 original size:100 final size:103
Alignment explanation
Indices: 8420002--8420251 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
8419992 ATTTGGGTAA
8420002 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
8420067 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
8420108 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
8420170 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
8420208 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
8420252 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:8433604 original size:21 final size:23
Alignment explanation
Indices: 8433575--8433629 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
8433565 GCATGACTTT
8433575 TTAACTAATACTTTT-AAATTAAA
1 TTAA-TAATACTTTTAAAATTAAA
* *
8433598 TT-ATAATTATTTTTAAAATTAAT
1 TTAATAA-TACTTTTAAAATTAAA
8433621 TTAATAATA
1 TTAATAATA
8433630 TGATAGAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
21 3 0.11
22 7 0.26
23 13 0.48
24 4 0.15
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
TTAATAATACTTTTAAAATTAAA
Found at i:8435430 original size:18 final size:17
Alignment explanation
Indices: 8435404--8435437 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8435394 TCTAGTTTAG
*
8435404 ATATTAAATTGAAAAAAA
1 ATATCAAATT-AAAAAAA
8435422 ATATCAAATTAAAAAA
1 ATATCAAATTAAAAAA
8435438 TACCAAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (17 bp):
ATATCAAATTAAAAAAA
Found at i:8445857 original size:34 final size:32
Alignment explanation
Indices: 8445809--8445875 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 32
8445799 TCTGATCTGT
*
8445809 TGGCTGTCTCTTTTTTTTCTGTACCATAATCTCC
1 TGGCTGTCTC--TTTTTTATGTACCATAATCTCC
8445843 TGGCTGTC-CATTTTTTATGTACCATAATCTCC
1 TGGCTGTCTC-TTTTTTATGTACCATAATCTCC
8445875 T
1 T
8445876 AGTATATGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 22 0.71
33 1 0.03
34 8 0.26
ACGTcount: A:0.15, C:0.25, G:0.12, T:0.48
Consensus pattern (32 bp):
TGGCTGTCTCTTTTTTATGTACCATAATCTCC
Found at i:8453460 original size:25 final size:25
Alignment explanation
Indices: 8453407--8453471 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
8453397 CGATTTACAG
* * * * *
8453407 CTCGTATGAGAAATTATATTTATAT
1 CTCGTGTGAGCAATTATATTCACAA
8453432 CTCGTGTGAGCAATTATATTCACAA
1 CTCGTGTGAGCAATTATATTCACAA
8453457 CTCGTGTGAGCAATT
1 CTCGTGTGAGCAATT
8453472 TCGGTATCCG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (25 bp):
CTCGTGTGAGCAATTATATTCACAA
Found at i:8454176 original size:31 final size:32
Alignment explanation
Indices: 8454141--8454207 Score: 109
Period size: 31 Copynumber: 2.1 Consensus size: 32
8454131 AAGATGATGG
8454141 AAGTGTCTTGTTTGAATAGTTGATGAATACC-
1 AAGTGTCTTGTTTGAATAGTTGATGAATACCT
* *
8454172 AAGTGTCTTTTTTGAGTAGTTGATGAATACCT
1 AAGTGTCTTGTTTGAATAGTTGATGAATACCT
8454204 AAGT
1 AAGT
8454208 TGTTAAGCCT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
31 29 0.88
32 4 0.12
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.40
Consensus pattern (32 bp):
AAGTGTCTTGTTTGAATAGTTGATGAATACCT
Found at i:8455355 original size:66 final size:66
Alignment explanation
Indices: 8455279--8455580 Score: 410
Period size: 66 Copynumber: 4.6 Consensus size: 66
8455269 TTCATTTATA
* * *
8455279 TATTTGGCACCCAGTGCCTCATCAGATAAACCGAAGTAATTTAATTGCGCCCAGTACTCATCGAT
1 TATTTGGCACCCAGTGCCTCATCAGATAAACCGAAGTAATTCAATTGCGCCCAATGCTCATCGAT
8455344 G
66 G
** ** * *
8455345 TATTTGGCACCCAGTGCC-CTATTGGATAAACCTTAGTAATTCGATTGCGCCCAATGTTCATCGA
1 TATTTGGCACCCAGTGCCTC-ATCAGATAAACCGAAGTAATTCAATTGCGCCCAATGCTCATCGA
8455409 TG
65 TG
**
8455411 TATTTGGCACCCAGTGCCTCATCAGATAAACTTAAGTAATTCAATTGCGCCCAATGCTCATCGAT
1 TATTTGGCACCCAGTGCCTCATCAGATAAACCGAAGTAATTCAATTGCGCCCAATGCTCATCGAT
*
8455476 A
66 G
* * *
8455477 TATTTGGCACCCAGTGCCTTATCGGATAAACCAAAGTAATTCAATTGCGCCCAATGCTCATCGAT
1 TATTTGGCACCCAGTGCCTCATCAGATAAACCGAAGTAATTCAATTGCGCCCAATGCTCATCGAT
8455542 G
66 G
* * *
8455543 TGTTTGGCATCCAGTGCCTCATC-GAATAAACTGAAGTA
1 TATTTGGCACCCAGTGCCTCATCAG-ATAAACCGAAGTA
8455581 GTTCTTGCAC
Statistics
Matches: 207, Mismatches: 26, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
65 2 0.01
66 204 0.99
67 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (66 bp):
TATTTGGCACCCAGTGCCTCATCAGATAAACCGAAGTAATTCAATTGCGCCCAATGCTCATCGAT
G
Found at i:8455504 original size:132 final size:132
Alignment explanation
Indices: 8455279--8455580 Score: 462
Period size: 132 Copynumber: 2.3 Consensus size: 132
8455269 TTCATTTATA
* * *
8455279 TATTTGGCACCCAGTGCCTCATCAGATAAACCGAAGTAATTTAATTGCGCCCAGTACTCATCGAT
1 TATTTGGCACCCAGTGCCTCATCAGATAAACTGAAGTAATTCAATTGCGCCCAATACTCATCGAT
* * ** * *
8455344 GTATTTGGCACCCAGTGCCCTATTGGATAAACCTTAGTAATTCGATTGCGCCCAATGTTCATCGA
66 ATATTTGGCACCCAGTGCCCTATCGGATAAACCAAAGTAATTCAATTGCGCCCAATGCTCATCGA
8455409 TG
131 TG
* *
8455411 TATTTGGCACCCAGTGCCTCATCAGATAAACTTAAGTAATTCAATTGCGCCCAATGCTCATCGAT
1 TATTTGGCACCCAGTGCCTCATCAGATAAACTGAAGTAATTCAATTGCGCCCAATACTCATCGAT
*
8455476 ATATTTGGCACCCAGTGCCTTATCGGATAAACCAAAGTAATTCAATTGCGCCCAATGCTCATCGA
66 ATATTTGGCACCCAGTGCCCTATCGGATAAACCAAAGTAATTCAATTGCGCCCAATGCTCATCGA
8455541 TG
131 TG
* *
8455543 TGTTTGGCATCCAGTGCCTCATC-GAATAAACTGAAGTA
1 TATTTGGCACCCAGTGCCTCATCAG-ATAAACTGAAGTA
8455581 GTTCTTGCAC
Statistics
Matches: 154, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
131 1 0.01
132 153 0.99
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
TATTTGGCACCCAGTGCCTCATCAGATAAACTGAAGTAATTCAATTGCGCCCAATACTCATCGAT
ATATTTGGCACCCAGTGCCCTATCGGATAAACCAAAGTAATTCAATTGCGCCCAATGCTCATCGA
TG
Found at i:8456682 original size:54 final size:54
Alignment explanation
Indices: 8456600--8456710 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
8456590 AAAAGGAAAA
8456600 ATAGCAGATTAGTCCCTGACACTTCTTCTATTGTTGTTATTCCCTGGTAAGTTC
1 ATAGCAGATTAGTCCCTGACACTTCTTCTATTGTTGTTATTCCCTGGTAAGTTC
*
8456654 ATAGCAGATTAGTCCCTGACACTTCTTCTATTGTTGTTATTCCTTGGTAAGTTC
1 ATAGCAGATTAGTCCCTGACACTTCTTCTATTGTTGTTATTCCCTGGTAAGTTC
8456708 ATA
1 ATA
8456711 CGGTATAGTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (54 bp):
ATAGCAGATTAGTCCCTGACACTTCTTCTATTGTTGTTATTCCCTGGTAAGTTC
Found at i:8457975 original size:14 final size:16
Alignment explanation
Indices: 8457946--8457978 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
8457936 AAAGTTATAG
8457946 GTGGTTATATTGGTAT
1 GTGGTTATATTGGTAT
8457962 GTGGTTA-A-TGGTAT
1 GTGGTTATATTGGTAT
8457976 GTG
1 GTG
8457979 ATAGAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 1 0.06
16 7 0.41
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (16 bp):
GTGGTTATATTGGTAT
Found at i:8459458 original size:21 final size:21
Alignment explanation
Indices: 8459403--8459458 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
8459393 TTTTCGATTT
* *
8459403 CCACACGGGCGTGTGCCTTAG
1 CCACATGGGCGTGTCCCTTAG
* *
8459424 ACACATGGCCGTGTCCCTTAG
1 CCACATGGGCGTGTCCCTTAG
*
8459445 CCACATGGGTGTGT
1 CCACATGGGCGTGT
8459459 GAGTTTTCCA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.16, C:0.30, G:0.30, T:0.23
Consensus pattern (21 bp):
CCACATGGGCGTGTCCCTTAG
Found at i:8461688 original size:13 final size:13
Alignment explanation
Indices: 8461670--8461694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8461660 TAACATAACT
8461670 TTCAATTTGAAAC
1 TTCAATTTGAAAC
8461683 TTCAATTTGAAA
1 TTCAATTTGAAA
8461695 TCTGTTTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.40
Consensus pattern (13 bp):
TTCAATTTGAAAC
Found at i:8462117 original size:3 final size:3
Alignment explanation
Indices: 8462109--8462150 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
8462099 TTTGATGTCT
8462109 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8462151 CCTATTTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8463522 original size:20 final size:19
Alignment explanation
Indices: 8463484--8463522 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8463474 GGCCTTCAAA
**
8463484 ATGATTTTATTTTATTTTT
1 ATGATTTTATTAAATTTTT
8463503 ATGATTTTACTTAAATTTTT
1 ATGATTTTA-TTAAATTTTT
8463523 TAAAGTCTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (19 bp):
ATGATTTTATTAAATTTTT
Found at i:8470406 original size:16 final size:15
Alignment explanation
Indices: 8470371--8470416 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
8470361 TTAACTTATT
8470371 ATTTAATTATA-ATTA
1 ATTTAATTA-ACATTA
*
8470386 GTTTAATTACACATTA
1 ATTTAATTA-ACATTA
8470402 ATTT-ATTAACATTA
1 ATTTAATTAACATTA
8470416 A
1 A
8470417 CGTTCATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 7 0.26
15 13 0.48
16 7 0.26
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (15 bp):
ATTTAATTAACATTA
Found at i:8473638 original size:54 final size:54
Alignment explanation
Indices: 8473580--8473691 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
8473570 TTGTAATTAA
* * * ** *
8473580 CTGTGCCCATGTA-CTATAAGGTCACACGACTGTGTGGCTAGGCCATGTAACTCT
1 CTGTGACCATGTAGCT-CAAGGTCACACGACAGTGTCACCAGGCCATGTAACTCT
* *
8473634 CTGTGACCATGTAGCTCAGGGTCACACGGCAGTGTCACCAGGCCATGTAACTCT
1 CTGTGACCATGTAGCTCAAGGTCACACGACAGTGTCACCAGGCCATGTAACTCT
8473688 CTGT
1 CTGT
8473692 ACCCCTGTGG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 47 0.96
55 2 0.04
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (54 bp):
CTGTGACCATGTAGCTCAAGGTCACACGACAGTGTCACCAGGCCATGTAACTCT
Found at i:8479212 original size:40 final size:40
Alignment explanation
Indices: 8479152--8479362 Score: 127
Period size: 40 Copynumber: 5.5 Consensus size: 40
8479142 TGGTTCAATC
**
8479152 TTTGTCAATTTATCTTACTAGTGCAGGGCACACCATTATA
1 TTTGTCAATTTATCCGACTAGTGCAGGGCACACCATTATA
* * ** * *
8479192 TTTGTCGATTTATCCGACTAGTTCTTGG--C-GCA--ATC
1 TTTGTCAATTTATCCGACTAGTGCAGGGCACACCATTATA
** *
8479227 TTCATCAATTTATCTGACTAGTGCAGGGCACACCATTATA
1 TTTGTCAATTTATCCGACTAGTGCAGGGCACACCATTATA
* * * * *
8479267 TTTGTCAATTTATTCGGCTAGTGCTGGGCGCA--A--GT-
1 TTTGTCAATTTATCCGACTAGTGCAGGGCACACCATTATA
** * ** *
8479302 TTCATCAGTTTATCTAACCAGTGCAGGGCACACCATTATA
1 TTTGTCAATTTATCCGACTAGTGCAGGGCACACCATTATA
* * *
8479342 TATGTCAGTTTATTCGACTAG
1 TTTGTCAATTTATCCGACTAG
8479363 CGTTTGGCGC
Statistics
Matches: 118, Mismatches: 43, Indels: 20
0.65 0.24 0.11
Matches are distributed among these distances:
35 45 0.38
36 1 0.01
37 4 0.03
38 4 0.03
39 1 0.01
40 63 0.53
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (40 bp):
TTTGTCAATTTATCCGACTAGTGCAGGGCACACCATTATA
Found at i:8479236 original size:75 final size:75
Alignment explanation
Indices: 8479097--8479416 Score: 315
Period size: 75 Copynumber: 4.3 Consensus size: 75
8479087 AACCAAGTAC
* * * * * ** ** **
8479097 TGCAAGGCACACCCTCTATATCTGTCGGTTTACCCGACTAGCACTTGGTTCAATCTTTGTCAATT
1 TGCAGGGCACACCAT-TATATTTGTCGATTTATCCGACTAGTTCTTGGCGCAATCTTCATCAATT
*
8479162 TATCTTACTAG
65 TATCTGACTAG
8479173 TGCAGGGCACACCATTATATTTGTCGATTTATCCGACTAGTTCTTGGCGCAATCTTCATCAATTT
1 TGCAGGGCACACCATTATATTTGTCGATTTATCCGACTAGTTCTTGGCGCAATCTTCATCAATTT
8479238 ATCTGACTAG
66 ATCTGACTAG
* * * * * *
8479248 TGCAGGGCACACCATTATATTTGTCAATTTATTCGGCTAGTGCTGGGCGCAAGT-TTCATCAGTT
1 TGCAGGGCACACCATTATATTTGTCGATTTATCCGACTAGTTCTTGGCGCAA-TCTTCATCAATT
* *
8479312 TATCTAACCAG
65 TATCTGACTAG
* * * * *
8479323 TGCAGGGCACACCATTATATATGTC-AGTTTATTCGACTAGCGT-TTGGCGCAA-CTTTCGTCAG
1 TGCAGGGCACACCATTATATTTGTCGA-TTTATCCGACTAG-TTCTTGGCGCAATC-TTCATCAA
8479385 TTTATCTGACTAG
63 TTTATCTGACTAG
* * *
8479398 TGCTGAGCACATCATTATA
1 TGCAGGGCACACCATTATA
8479417 ATTATTAGTT
Statistics
Matches: 208, Mismatches: 31, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
74 1 0.00
75 193 0.93
76 14 0.07
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.35
Consensus pattern (75 bp):
TGCAGGGCACACCATTATATTTGTCGATTTATCCGACTAGTTCTTGGCGCAATCTTCATCAATTT
ATCTGACTAG
Found at i:8482506 original size:16 final size:16
Alignment explanation
Indices: 8482485--8482519 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
8482475 AGTCCTTGTA
8482485 ATTTTA-TCACTTTAAC
1 ATTTTAGTC-CTTTAAC
8482501 ATTTTAGTCCTTTAAC
1 ATTTTAGTCCTTTAAC
8482517 ATT
1 ATT
8482520 AAAATTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.29, C:0.17, G:0.03, T:0.51
Consensus pattern (16 bp):
ATTTTAGTCCTTTAAC
Found at i:8484986 original size:21 final size:21
Alignment explanation
Indices: 8484960--8485002 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8484950 CAAACACGCC
8484960 AACAGAAGCTCGTGAGACCTG
1 AACAGAAGCTCGTGAGACCTG
*
8484981 AACAGAAGCTCGTGAGAGCTG
1 AACAGAAGCTCGTGAGACCTG
8485002 A
1 A
8485003 TCCACCCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.21, G:0.30, T:0.14
Consensus pattern (21 bp):
AACAGAAGCTCGTGAGACCTG
Found at i:8487546 original size:18 final size:16
Alignment explanation
Indices: 8487523--8487565 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
8487513 AAATATACTC
*
8487523 CATAAACTTACATACAAA
1 CATAAACATACA-A-AAA
8487541 CATAAACATACAAAAA
1 CATAAACATACAAAAA
*
8487557 CATATACAT
1 CATAAACAT
8487566 TCACTTAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 11 0.48
17 1 0.04
18 11 0.48
ACGTcount: A:0.58, C:0.21, G:0.00, T:0.21
Consensus pattern (16 bp):
CATAAACATACAAAAA
Found at i:8492428 original size:30 final size:30
Alignment explanation
Indices: 8492357--8492431 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 30
8492347 AAGAAAAAAA
* *
8492357 AGTGACCAAAATGAAAGCTTACTAAAGTTG
1 AGTGATCAAAATGAAAACTTACTAAAGTTG
* *
8492387 AGTTATCAAAATGAAAATTTACTAAAGTTTG
1 AGTGATCAAAATGAAAACTTACTAAAG-TTG
*
8492418 -GTGATTAAAATGAA
1 AGTGATCAAAATGAA
8492432 TGTACAATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 35 0.92
31 3 0.08
ACGTcount: A:0.45, C:0.08, G:0.17, T:0.29
Consensus pattern (30 bp):
AGTGATCAAAATGAAAACTTACTAAAGTTG
Found at i:8499852 original size:12 final size:13
Alignment explanation
Indices: 8499831--8499868 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
8499821 GCGCATGAAT
8499831 ATAAAAATAA-AA
1 ATAAAAATAATAA
*
8499843 ATAAAGATAATAA
1 ATAAAAATAATAA
*
8499856 ATAATAATAATAA
1 ATAAAAATAATAA
8499869 TGATAACAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.24
Consensus pattern (13 bp):
ATAAAAATAATAA
Found at i:8499867 original size:22 final size:22
Alignment explanation
Indices: 8499831--8499881 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
8499821 GCGCATGAAT
8499831 ATAAA-AATAAAAATAAAGATA
1 ATAAATAATAAAAATAAAGATA
* *
8499852 ATAAATAATAATAATAATGATA
1 ATAAATAATAAAAATAAAGATA
*
8499874 ACAAATAA
1 ATAAATAA
8499882 CAATTTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.24
Consensus pattern (22 bp):
ATAAATAATAAAAATAAAGATA
Found at i:8504355 original size:19 final size:20
Alignment explanation
Indices: 8504318--8504356 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8504308 TCACATGCCG
*
8504318 AAGTGAAAAATTAATTTTTA
1 AAGTGAAAAAGTAATTTTTA
*
8504338 AAGTGAAAAAGTGATTTTT
1 AAGTGAAAAAGTAATTTTT
8504357 GTGGTCATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (20 bp):
AAGTGAAAAAGTAATTTTTA
Found at i:8504481 original size:47 final size:47
Alignment explanation
Indices: 8504402--8504561 Score: 239
Period size: 47 Copynumber: 3.4 Consensus size: 47
8504392 AAGAAGGAAG
* * * *
8504402 AAGTGGTAGTTTATCTGCAAAAGTGGTTGCTTGTCCACAATATTATA
1 AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTATT
* * * * *
8504449 AAGTGGAAATTTATCTGCAACAGTAGTGGCTTGTCCATAATTTTATT
1 AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTATT
8504496 AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTATT
1 AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTATT
8504543 AAGTGGCAGTTTATCTGCA
1 AAGTGGCAGTTTATCTGCA
8504562 TTACTGTGAC
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (47 bp):
AAGTGGCAGTTTATCTGCAAAAGTGGTGGCTTGTCCATAATATTATT
Found at i:8506459 original size:21 final size:21
Alignment explanation
Indices: 8506435--8506475 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8506425 ACAAAAAAAA
8506435 AACTAA-AACAAGAAATTTAAG
1 AACTAAGAACAA-AAATTTAAG
*
8506456 AACTAAGAACAAATATTTAA
1 AACTAAGAACAAAAATTTAA
8506476 AATAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.61, C:0.10, G:0.07, T:0.22
Consensus pattern (21 bp):
AACTAAGAACAAAAATTTAAG
Found at i:8507388 original size:16 final size:16
Alignment explanation
Indices: 8507367--8507402 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
8507357 ATTCTTTATT
8507367 TCCTCGAAAAGATTCA
1 TCCTCGAAAAGATTCA
8507383 TCCTCGAAAAGATTCA
1 TCCTCGAAAAGATTCA
8507399 TCCT
1 TCCT
8507403 AACATATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.28
Consensus pattern (16 bp):
TCCTCGAAAAGATTCA
Found at i:8513763 original size:16 final size:16
Alignment explanation
Indices: 8513744--8513787 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
8513734 AGAACAACTC
*
8513744 TTGTTTAGAATAGTTA
1 TTGTTTAGAATAATTA
*
8513760 TTGTTTAGAACAATTA
1 TTGTTTAGAATAATTA
8513776 TTGTTTGAGAAT
1 TTGTTT-AGAAT
8513788 CTAAATTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.32, C:0.02, G:0.18, T:0.48
Consensus pattern (16 bp):
TTGTTTAGAATAATTA
Found at i:8513973 original size:32 final size:32
Alignment explanation
Indices: 8513936--8513996 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
8513926 ACTATGTTTA
*
8513936 GAACAATTGTTGTTC-AGAGCAGCTTCTATTAT
1 GAACAATTGTTGTTCAAGAACAGC-TCTATTAT
*
8513968 GAACAATTGTTTTTCAAGAACAGCTCTAT
1 GAACAATTGTTGTTCAAGAACAGCTCTAT
8513997 AATATGGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (32 bp):
GAACAATTGTTGTTCAAGAACAGCTCTATTAT
Found at i:8522981 original size:26 final size:26
Alignment explanation
Indices: 8522934--8523005 Score: 69
Period size: 26 Copynumber: 2.8 Consensus size: 26
8522924 TCGTTATATG
8522934 GCTCTTTGTGAGCTTCACGATTAA-A
1 GCTCTTTGTGAGCTTCACGATTAATA
* *
8522959 GACTCTTTGTGAGTTTTC-TGATTAATA
1 G-CTCTTTGTGAG-CTTCACGATTAATA
* *
8522986 GCTCTTCG-GAGCTTCCCGAT
1 GCTCTTTGTGAGCTTCACGAT
8523006 ATGGCTGGCT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
24 3 0.08
25 7 0.18
26 23 0.61
27 5 0.13
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
GCTCTTTGTGAGCTTCACGATTAATA
Found at i:8525266 original size:15 final size:15
Alignment explanation
Indices: 8525246--8525276 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8525236 ACAATAACAA
8525246 TGGCCCAAACTACAG
1 TGGCCCAAACTACAG
*
8525261 TGGCCCAAATTACAG
1 TGGCCCAAACTACAG
8525276 T
1 T
8525277 CAGAAACCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.19
Consensus pattern (15 bp):
TGGCCCAAACTACAG
Found at i:8526473 original size:23 final size:23
Alignment explanation
Indices: 8526447--8526495 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
8526437 ATCTTCATTG
* *
8526447 TTTTCTTATATACATATTTATTT
1 TTTTCTCATATACATATATATTT
**
8526470 TTTTCTCATATTTATATATATTT
1 TTTTCTCATATACATATATATTT
8526493 TTT
1 TTT
8526496 ATTTAATTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.67
Consensus pattern (23 bp):
TTTTCTCATATACATATATATTT
Found at i:8526945 original size:14 final size:14
Alignment explanation
Indices: 8526926--8526953 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8526916 GCTTTGCATG
8526926 TTATTGATTTATTT
1 TTATTGATTTATTT
8526940 TTATTGATTTATTT
1 TTATTGATTTATTT
8526954 ATTTGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (14 bp):
TTATTGATTTATTT
Found at i:8532932 original size:88 final size:87
Alignment explanation
Indices: 8532790--8533971 Score: 725
Period size: 88 Copynumber: 13.7 Consensus size: 87
8532780 TGTTTGGTAG
* * ** * *
8532790 GAAGTGGATCGAAGGT-GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGT--AGAAGTAGATCGAAGAAAGCA
8532854 GATCTTGTCTTCATGTATTGGCGT
64 GATCTTGTCTTCATGTATTGGCGT
* * *
8532878 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGAAAGTGGATC---G--A--AG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGTAG-AAGTAGATCGAAGAAAGCAG
*** * *
8532936 ATCTTGTCTTCCCATATTGGTGGC
65 ATCTTGTCTTCATGTATTGG-CGT
* * * * *
8532960 GAAGTAGATCGAGGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGTA-GAAGTAGATCGAAGAAAGCAG
* * * *
8533025 ATCCTGTCTTCCTATATTGGTAG-
65 ATCTTGTCTTCATGTATTGG-CGT
* ** * * * *
8533048 GAAGTGGATCGAAGAT------T-TTGTCTTCCCATATTGGTGGCGAAGTATATCGAGGAAACCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGT--AGAAGTAGATCGAAGAAAGCA
* *
8533106 GATCTTGTTTTCATGTATTTGCGT
64 GATCTTGTCTTCATGTATTGGCGT
* * *
8533130 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATC---G--A--AG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGTA-GAAGTAGATCGAAGAAAGCAG
*** * *
8533188 ATCTTGTCTTCCCATATTGGTGGC
65 ATCTTGTCTTCATGTATTGG-CGT
* * * * *
8533212 GAATTAGATCAAATAAAGTAGATCTTGTCTTCATATATTGGCGT-GAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATT-G-GTAGAAGTAGATCGAAGAAAGCA
* * * * *
8533276 AATCCTGTCTTCCTAG-ATTGGTAGC
64 GATCTTGTCTTCAT-GTATTGG-CGT
* * * * *
8533301 GAAGTGGATCGAAGATAGCTGATCCTGTCTTCCTATATTGGTAGGAAGTGGATC---G--A--AG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGTA-GAAGTAGATCGAAGAAAGCAG
* *** *
8533359 ATCTTGTTTTCCCATATTGGTG-
65 ATCTTGTCTTCATGTATTGGCGT
* * * *
8533381 GCAAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT-GAAGTAGATCAAAGAAAG
1 G--AAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATT-G-GTAGAAGTAGATCGAAGAAAG
* * * * * *
8533445 CAAATCCTGTCTTCCTATATTGGTAGC
62 CAGATCTTGTCTTCATGTATTGG-CGT
* * * ** * * *
8533472 GAAGTGGATTGAAGATTGCAGATCTTGTCTTCCCATACTGGTGGCAAAGTAGATCGAAGAAAGTA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGTAG--AAGTAGATCGAAGAAAGCA
**
8533537 GATCTTGTCTTCATGTATCAGCGT
64 GATCTTGTCTTCATGTATTGGCGT
* * * * *
8533561 GAAGTAGATCAAAGGTAACAGATCTTGTCTTCATGTATTGGCGT-GAAGTAGATCGAAGAAAACA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATT-G-GTAGAAGTAGATCGAAGAAAGCA
* *
8533625 GATCTTGTCTTCATGTATCGGCAT
64 GATCTTGTCTTCATGTATTGGCGT
* * * * *
8533649 GAAGTAGATCAAAGGTAGAATATCTTGTCTTCATGTATTGGCGT-GAAGTAGATCGAAGAAA--A
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATT-G-GTAGAAGTAGATCGAAGAAAGCA
* *
8533711 TGAATCTTGTCTTCATGTATGGGCAT
64 -G-ATCTTGTCTTCATGTATTGGCGT
* * * * * * * *
8533737 GAAGTAGATCAAAGGTAGAAGATCTTGTCTTCATGTATTGGCATGAAGTAGATTGAAGAAAACGG
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGTA-GAAGTAGATCGAAGAAAGCAG
* *
8533802 ATCTTGTCTTCATGTATCGGCAT
65 ATCTTGTCTTCATGTATTGGCGT
* * * * * * **
8533825 GAAGTAGATC-AAGGGTAGAAGATCTTGTCTTCATGTATCGGCATGAAGTAGATCAAAGGTAGCA
1 GAAGTAGATCGAA-GATAGCAGATCTTGTCTTCATATATTGGTA-GAAGTAGATCGAAGAAAGCA
*
8533889 GATCTTGTCTTCATGTATTGGCAT
64 GATCTTGTCTTCATGTATTGGCGT
* * * * *
8533913 GAAGTAGATCAAAGAT-GACAGATATTATCTTCATGTATTGGCATGAAGTAGATCGAAGA
1 GAAGTAGATCGAAGATAG-CAGATCTTGTCTTCATATATTGGTA-GAAGTAGATCGAAGA
8533972 TATAAATCTT
Statistics
Matches: 879, Mismatches: 152, Indels: 126
0.76 0.13 0.11
Matches are distributed among these distances:
80 1 0.00
81 52 0.06
82 192 0.22
83 5 0.01
84 5 0.01
85 5 0.01
86 3 0.00
87 13 0.01
88 366 0.42
89 199 0.23
90 35 0.04
91 3 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (87 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCATATATTGGTAGAAGTAGATCGAAGAAAGCAGA
TCTTGTCTTCATGTATTGGCGT
Found at i:8532938 original size:37 final size:37
Alignment explanation
Indices: 8532897--8533082 Score: 113
Period size: 37 Copynumber: 4.6 Consensus size: 37
8532887 CGAAGATAGC
*
8532897 AGATCCTGTCTTCCTATATTGGTAGAAAGTGGATCGA
1 AGATCTTGTCTTCCTATATTGGTAGAAAGTGGATCGA
* * * *
8532934 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAGGAAA
1 AGATCTTGTCTTCCTATATTGGTAG-AAAGTGGATC---G--A
* * * *
8532977 GCAGATCTTGTCTTCATGTATTGGCATG-AAGTAGATCGA
1 --AGATCTTGTCTTCCTATATTGGTA-GAAAGTGGATCGA
*
8533016 AGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
1 AGAT--C---T--TGTCTTCCTATATTGGTAGAAAGTGGATCGA
* *
8533060 AGATTTTGTCTTCCCATATTGGT
1 AGATCTTGTCTTCCTATATTGGT
8533083 GGCGAAGTAT
Statistics
Matches: 116, Mismatches: 16, Indels: 34
0.70 0.10 0.20
Matches are distributed among these distances:
37 42 0.36
38 8 0.07
39 3 0.03
41 2 0.02
42 1 0.01
43 2 0.02
44 38 0.33
45 19 0.16
46 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (37 bp):
AGATCTTGTCTTCCTATATTGGTAGAAAGTGGATCGA
Found at i:8532981 original size:126 final size:126
Alignment explanation
Indices: 8532808--8533316 Score: 847
Period size: 126 Copynumber: 4.0 Consensus size: 126
8532798 TCGAAGGTGC
*
8532808 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
*
8532873 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGAAAGTGGATCGA
66 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
*
8532934 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAGGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
*
8532999 GGCATGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
66 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
* * * * *
8533060 AGATTTTGTCTTCCCATATTGGTGGCGAAGTATATCGAGGAAACCAGATCTTGTTTTCATGTATT
1 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
*
8533125 TGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
66 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
* * * * *
8533186 AGATCTTGTCTTCCCATATTGGTGGCGAATTAGATCAAATAAAGTAGATCTTGTCTTCATATATT
1 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
* * *
8533251 GGCGTGAAGTAGATCGAAGAAAGCAAATCCTGTCTTCCTAGATTGGTAGCGAAGTGGATCGA
66 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGA
8533313 AGAT
1 AGAT
8533317 AGCTGATCCT
Statistics
Matches: 358, Mismatches: 24, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
126 342 0.96
127 16 0.04
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.31
Consensus pattern (126 bp):
AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
Found at i:8532989 original size:82 final size:82
Alignment explanation
Indices: 8532878--8533531 Score: 425
Period size: 82 Copynumber: 7.7 Consensus size: 82
8532868 GTATTGGCGT
* * * *
8532878 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGAAAGTGGATCGAAGATCTTGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATCTTGT
8532943 CTTCCCATATTGGTGGC
66 CTTCCCATATTGGTGGC
* * * * *
8532960 GAAGTAGATCGAGGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATAGCAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT--C--
* *
8533025 ATCCTGTCTTCCTATATTGGTAG-
62 -T--TGTCTTCCCATATTGGTGGC
* * * * *
8533048 GAAGTGGATC---G--A--AGATTTTGTCTTCCCATATTGGTGGCGAAGTATATCGAGGAAACCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATC---G--A--A
* *** *
8533106 GATCTTGTTTTCATGTATT--TGCGT
58 GATCTTGTCTTCCCATATTGGTG-GC
* * *
8533130 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATCTTGT
8533195 CTTCCCATATTGGTGGC
66 CTTCCCATATTGGTGGC
* * * * * *
8533212 GAATTAGATCAAATAAAGTAGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATC---G-AAG--
* * * *
8533276 AATCCTGTCTTCCTAGATTGGTAGC
59 -ATCTTGTCTTCCCATATTGGTGGC
* * * * *
8533301 GAAGTGGATCGAAGATAGCTGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATCTTGT
*
8533366 TTTCCCATATTGGTGGC
66 CTTCCCATATTGGTGGC
* * * * *
8533383 AAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAAAGCA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATC---G-AAG--
* * *
8533447 AATCCTGTCTTCCTATATTGGTAGC
59 -ATCTTGTCTTCCCATATTGGTGGC
* * ** * *
8533472 GAAGTGGATTGAAGATTGCAGATCTTGTCTTCCCATACTGGT-GGCAAAGTAGATCGAAGA
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGG--AAGTAGATCGAAGA
8533532 AAGTAGATCT
Statistics
Matches: 437, Mismatches: 89, Indels: 91
0.71 0.14 0.15
Matches are distributed among these distances:
80 1 0.00
81 37 0.08
82 185 0.42
83 5 0.01
84 2 0.00
85 9 0.02
86 10 0.02
87 5 0.01
88 18 0.04
89 155 0.35
90 10 0.02
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.31
Consensus pattern (82 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATCTTGT
CTTCCCATATTGGTGGC
Found at i:8533316 original size:171 final size:171
Alignment explanation
Indices: 8533130--8533636 Score: 637
Period size: 171 Copynumber: 2.9 Consensus size: 171
8533120 GTATTTGCGT
*
8533130 GAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGT
1 GAAGTGGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGT
* * * *
8533195 CTTCCCATATTGGTGGCGAATTAGATCAAATAAAGTAGATCTTGTCTTCATATATTGGCGTGAAG
66 CTTCCCATATTGGTGGCAAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAG
*
8533260 TAGATCGAAGAAAGCAAATCCTGTCTTCCTAGATTGGTAGC
131 TAGATCAAAGAAAGCAAATCCTGTCTTCCTAGATTGGTAGC
*
8533301 GAAGTGGATCGAAGATAGCTGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGT
1 GAAGTGGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGT
* *
8533366 TTTCCCATATTGGTGGCAAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAG
66 CTTCCCATATTGGTGGCAAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAG
*
8533431 TAGATCAAAGAAAGCAAATCCTGTCTTCCTATATTGGTAGC
131 TAGATCAAAGAAAGCAAATCCTGTCTTCCTAGATTGGTAGC
* * * * * *
8533472 GAAGTGGATTGAAGATTGCAGATCTTGTCTTCCCATACTGGT-GGCAAAGTAGATCGAAGAAAGT
1 GAAGTGGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGG--AAGTGGATC---G--A--
*** * * *
8533536 AGATCTTGTCTTCATGTATCAGCGT-G--AAGTAGATCAAAGGTAA-CAGATCTTGTCTTCATGT
57 AGATCTTGTCTTCCCATAT-TG-GTGGCAAAGTAGATCAAA-GAAAGCAGATCTTGTCTTCATAT
* * * *
8533597 ATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTC
119 ATTGGCGTGAAGTAGATCAAAGAAAGCAAATCCTGTCTTC
8533637 ATGTATCGGC
Statistics
Matches: 297, Mismatches: 27, Indels: 17
0.87 0.08 0.05
Matches are distributed among these distances:
170 2 0.01
171 197 0.66
172 8 0.03
175 1 0.00
177 1 0.00
178 66 0.22
179 18 0.06
180 2 0.01
181 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (171 bp):
GAAGTGGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATCTTGT
CTTCCCATATTGGTGGCAAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATATATTGGCGTGAAG
TAGATCAAAGAAAGCAAATCCTGTCTTCCTAGATTGGTAGC
Found at i:8533343 original size:297 final size:300
Alignment explanation
Indices: 8532934--8533972 Score: 915
Period size: 297 Copynumber: 3.4 Consensus size: 300
8532924 AGTGGATCGA
** * * * * *
8532934 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAGGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCGAAGAAAGCAAATCCTGTCTTCATGTATT
*
8532999 GGCATGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
65 GGCACGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
* * * * * * *
8533064 TTTGTCTTCCCATATTGGTGGCGAAGTATATCGAGGAAACCAGATCTTGTTTTCATGTATTTGCG
130 CTTGTCTTCCCATATTGGTGGCAAAGTAGATCAAAGAAACCAGATCTTGTCTTCATGTATTGGCG
* * * *
8533129 TGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGA-T-CGA-AGAT
195 TGAAGTAGATCAAAGAAAGCAAATCCTGTCTTCCTATATTGGTAGCGAAGTGGATTAAGATAGAT
* * * *
8533190 CTTGTCTTCCCATATTGGTGGCGAATTAGATCAAATAAAGT
260 CTTGTCTTCCCATACTGGTGGCAAAGTAGATCAAAGAAAGT
*
8533231 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGAAAGCAAATCCTGTCTTCCTAG-ATT
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGAAAGCAAATCCTGTCTTCAT-GTATT
* * *
8533295 GGTAGCGAAGTGGATCGAAGATAGCTGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGA
65 GGCA-CGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGA
* *
8533360 TCTTGTTTTCCCATATTGGTGGCAAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGC
129 TCTTGTCTTCCCATATTGGTGGCAAAGTAGATCAAAGAAACCAGATCTTGTCTTCATGTATTGGC
8533425 GTGAAGTAGATCAAAGAAAGCAAATCCTGTCTTCCTATATTGGTAGCGAAGTGGATTGAAGATTG
194 GTGAAGTAGATCAAAGAAAGCAAATCCTGTCTTCCTATATTGGTAGCGAAGTGGATT-AAGA-T-
*
8533490 CAGATCTTGTCTTCCCATACTGGTGGCAAAGTAGATCGAAGAAAGT
256 -AGATCTTGTCTTCCCATACTGGTGGCAAAGTAGATCAAAGAAAGT
* ** * * * *
8533536 AGATCTTGTCTTCATGTATCAGCGTGAAGTAGATCAAAGGTAA-CAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAA-GAAAGCAAATCCTGTCTTCATGTATT
** * * * * * * * * *
8533600 GGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATCGGCATGAAGTAGATCAAAGGT
65 GGCACGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATC------
* *** * *
8533665 AGAATATCTTGTCTTCATGTATTGGCGTG--AAGTAGATCGAAGAAA--ATGAATCTTGTCTTCA
124 -GAAGATCTTGTCTTCCCATATTGGTG-GCAAAGTAGATCAAAGAAACCA-G-ATCTTGTCTTCA
* * ** * * * * * *
8533726 TGTATGGGCATGAAGTAGATCAAAGGTAG-AAGATCTTGTCTTCATGTATTGGCA-TGAAGTAGA
185 TGTATTGGCGTGAAGTAGATCAAAGAAAGCAA-ATCCTGTCTTCCTATATTGGTAGCGAAGTGGA
* * * * ** *
8533789 TTGAAGAAAACGGATCTTGTCTT--CAT-GT-ATCGGCATGAAGTAGATCAAGGGTAGA
249 TT-AAG-ATA--GATCTTGTCTTCCCATACTGGT-GGCA--AAGTAGATCAAAGAAAGT
* * * * ** * *
8533844 AGATCTTGTCTTCATGTATCGGCATGAAGTAGATCAAAGGTAGCAGATCTTGTCTTCATGTATTG
1 AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGAAAGCAAATCCTGTCTTCATGTATTG
* * ** * * * * * *
8533909 GCATGAAGTAGATCAAAGAT-GACAGATATTATCTTCATGTATTGGCATGAAGTAGATCGAAGAT
66 GCACGAAGTAGATCGAAGATAG-CAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
8533973 ATAAATCTTA
Statistics
Matches: 622, Mismatches: 89, Indels: 58
0.81 0.12 0.08
Matches are distributed among these distances:
296 37 0.06
297 177 0.28
298 8 0.01
299 1 0.00
301 7 0.01
304 44 0.07
305 93 0.15
306 8 0.01
307 6 0.01
308 122 0.20
309 27 0.04
310 71 0.11
311 20 0.03
312 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (300 bp):
AGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGAAAGCAAATCCTGTCTTCATGTATTG
GCACGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATC
TTGTCTTCCCATATTGGTGGCAAAGTAGATCAAAGAAACCAGATCTTGTCTTCATGTATTGGCGT
GAAGTAGATCAAAGAAAGCAAATCCTGTCTTCCTATATTGGTAGCGAAGTGGATTAAGATAGATC
TTGTCTTCCCATACTGGTGGCAAAGTAGATCAAAGAAAGT
Found at i:8533376 original size:126 final size:120
Alignment explanation
Indices: 8532808--8533423 Score: 662
Period size: 126 Copynumber: 4.9 Consensus size: 120
8532798 TCGAAGGTGC
* *
8532808 AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC--AG--A--AGATCTTGTCTTCATATATT
*
8532873 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGAAAGTGGATCGA
60 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
*
8532934 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAGGAAAGCAGATCTTGTCTTCATGTATT
1 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC-A-G--A--AGATCTTGTCTTCATATATT
*
8532999 GGCATGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
60 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
* * * *
8533060 AGATTTTGTCTTCCCATATTGGTGGCGAAGTATATCGAGGAAACCAGATCTTGTTTTCATGTATT
1 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC-A-G--A--AGATCTTGTCTTCATATATT
*
8533125 TGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
60 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
* *
8533186 AGATCTTGTCTTCCCATATTGGTGGCGAATTAGATCAAATAAAGTAGATCTTGTCTTCATATATT
1 AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC------AGAAGATCTTGTCTTCATATATT
* * *
8533251 GGCGTGAAGTAGATCGAAGAAAGCAAATCCTGTCTTCCTAGATTGGTAGCGAAGTGGATCGA
60 GGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGA
* * * * **
8533313 AGATAGCTGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATC-GAAGATCTTGTTTTCCCATAT
1 AGAT--C---T--TGTCTTCCCATATTGGTGGCGAAGTAGATCAGAAGATCTTGTCTTCATATAT
* * * * * *
8533376 TGGTG-GCAAAGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGG
59 TGGCGTG--AAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGG
8533424 CGTGAAGTAG
Statistics
Matches: 438, Mismatches: 36, Indels: 31
0.87 0.07 0.06
Matches are distributed among these distances:
125 2 0.00
126 357 0.82
127 50 0.11
129 1 0.00
130 1 0.00
131 1 0.00
132 1 0.00
133 8 0.02
134 17 0.04
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (120 bp):
AGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCAGAAGATCTTGTCTTCATATATTGGCGTG
AAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGA
Found at i:8533972 original size:44 final size:44
Alignment explanation
Indices: 8533384--8533973 Score: 597
Period size: 44 Copynumber: 13.4 Consensus size: 44
8533374 ATTGGTGGCA
*
8533384 AAGTAGATCAAAGA-AAGCAGATCTTGTCTTCATGTATTGGCGTG
1 AAGTAGATCAAAGATAA-CAGATCTTGTCTTCATGTATTGGCATG
* * * * * *
8533428 AAGTAGATCAAAGA-AAGCAAATCCTGTCTTCCTATATTGGTAGCG
1 AAGTAGATCAAAGATAA-CAGATCTTGTCTTCATGTATTGGCA-TG
* ** ** * **
8533473 AAGTGGATTGAAGATTGCAGATCTTGTCTTCCCATACTGGTGGCA--
1 AAGTAGATCAAAGATAACAGATCTTGTCTT--CAT-GTATTGGCATG
* * ** *
8533518 AAGTAGATCGAAGA-AAGTAGATCTTGTCTTCATGTATCAGCGTG
1 AAGTAGATCAAAGATAA-CAGATCTTGTCTTCATGTATTGGCATG
* *
8533562 AAGTAGATCAAAGGTAACAGATCTTGTCTTCATGTATTGGCGTG
1 AAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGGCATG
* * *
8533606 AAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATCGGCATG
1 AAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGGCATG
* * *
8533650 AAGTAGATCAAAGGTAGA-ATATCTTGTCTTCATGTATTGGCGTG
1 AAGTAGATCAAAGATA-ACAGATCTTGTCTTCATGTATTGGCATG
* *
8533694 AAGTAGATCGAAGA-AA-ATGAATCTTGTCTTCATGTATGGGCATG
1 AAGTAGATCAAAGATAACA-G-ATCTTGTCTTCATGTATTGGCATG
*
8533738 AAGTAGATCAAAGGTAGA-AGATCTTGTCTTCATGTATTGGCATG
1 AAGTAGATCAAAGATA-ACAGATCTTGTCTTCATGTATTGGCATG
** * * *
8533782 AAGTAGATTGAAGAAAACGGATCTTGTCTTCATGTATCGGCATG
1 AAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGGCATG
* * *
8533826 AAGTAGATCAAGGGTAGA-AGATCTTGTCTTCATGTATCGGCATG
1 AAGTAGATCAAAGATA-ACAGATCTTGTCTTCATGTATTGGCATG
* *
8533870 AAGTAGATCAAAGGTAGCAGATCTTGTCTTCATGTATTGGCATG
1 AAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGGCATG
* * *
8533914 AAGTAGATCAAAGATGACAGATATTATCTTCATGTATTGGCATG
1 AAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGGCATG
*
8533958 AAGTAGATCGAAGATA
1 AAGTAGATCAAAGATA
8533974 TAAATCTTAT
Statistics
Matches: 453, Mismatches: 76, Indels: 34
0.80 0.13 0.06
Matches are distributed among these distances:
42 5 0.01
43 5 0.01
44 381 0.84
45 53 0.12
46 2 0.00
47 2 0.00
48 5 0.01
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (44 bp):
AAGTAGATCAAAGATAACAGATCTTGTCTTCATGTATTGGCATG
Found at i:8534073 original size:44 final size:44
Alignment explanation
Indices: 8533976--8534097 Score: 138
Period size: 44 Copynumber: 2.8 Consensus size: 44
8533966 CGAAGATATA
* * * *
8533976 AATCTTATCTCCTTGAAGTTGTAGTGGAGCAGATTAAAGCCTAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTAC
* * *
8534020 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATC-AC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTAC
* * *
8534063 AGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
8534098 CGCATCGGGT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 2 0.03
44 63 0.97
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTAC
Found at i:8534494 original size:15 final size:15
Alignment explanation
Indices: 8534474--8534504 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8534464 ACAATAACAA
8534474 TGGCCCAAACTACAG
1 TGGCCCAAACTACAG
*
8534489 TGGCCCAAATTACAG
1 TGGCCCAAACTACAG
8534504 T
1 T
8534505 CAGAAACCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.19
Consensus pattern (15 bp):
TGGCCCAAACTACAG
Done.