Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 30 of 211
Found at i:8838314 original size:13 final size:13
Alignment explanation
Indices: 8838298--8838323 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8838288 AATGACATTT
8838298 TTAAGAGGTTCCA
1 TTAAGAGGTTCCA
8838311 TTAAGAGGTTCCA
1 TTAAGAGGTTCCA
8838324 CGTTCATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
TTAAGAGGTTCCA
Found at i:8838635 original size:8 final size:8
Alignment explanation
Indices: 8838622--8838653 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
8838612 GAGGAGAGAT
8838622 TAAAAAAA
1 TAAAAAAA
8838630 TAAAAAAA
1 TAAAAAAA
8838638 TAAAAGAAA
1 TAAAA-AAA
8838647 TAAAAAA
1 TAAAAAA
8838654 GGAAAGGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.12
Consensus pattern (8 bp):
TAAAAAAA
Found at i:8838649 original size:17 final size:16
Alignment explanation
Indices: 8838622--8838653 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
8838612 GAGGAGAGAT
8838622 TAAAAAAATAAAAAAA
1 TAAAAAAATAAAAAAA
8838638 TAAAAGAAATAAAAAA
1 TAAAA-AAATAAAAAA
8838654 GGAAAGGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.12
Consensus pattern (16 bp):
TAAAAAAATAAAAAAA
Found at i:8846012 original size:13 final size:13
Alignment explanation
Indices: 8845994--8846023 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8845984 TATGGGATGG
*
8845994 AGAGGCAAACACA
1 AGAGGCAAAAACA
8846007 AGAGGCAAAAACA
1 AGAGGCAAAAACA
8846020 AGAG
1 AGAG
8846024 AACCAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.17, G:0.27, T:0.00
Consensus pattern (13 bp):
AGAGGCAAAAACA
Found at i:8855159 original size:20 final size:21
Alignment explanation
Indices: 8855136--8855183 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
8855126 TTTACTTTCG
8855136 ATTTTAAATTTATA-CGAATT
1 ATTTTAAATTTATATCGAATT
* * **
8855156 ATTTTTATTTTATATTTAATT
1 ATTTTAAATTTATATCGAATT
8855177 ATTTTAA
1 ATTTTAA
8855184 TGCATATGTA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTTTAAATTTATATCGAATT
Found at i:8856612 original size:20 final size:21
Alignment explanation
Indices: 8856538--8856612 Score: 63
Period size: 20 Copynumber: 3.8 Consensus size: 21
8856528 GTCAAAATGA
8856538 TTTAATTATAATTTAA-A-AT
1 TTTAATTATAATTTAATATAT
* *
8856557 TTATTATTATAATATACATAT-T
1 TT-TAATTATAATTTA-ATATAT
*
8856579 TTTAA--ATAAATTAATATAT
1 TTTAATTATAATTTAATATAT
8856598 TTTAATTAT-ATTTAA
1 TTTAATTATAATTTAA
8856613 CCCTTTGAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 13
0.69 0.10 0.21
Matches are distributed among these distances:
18 4 0.09
19 14 0.33
20 16 0.37
21 5 0.12
22 4 0.09
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTAATTATAATTTAATATAT
Found at i:8865091 original size:18 final size:20
Alignment explanation
Indices: 8865065--8865114 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
8865055 TTTTCACTTT
*
8865065 TAATTATAAT-CATTAA-AA
1 TAATAATAATACATTAACAA
*
8865083 TAATAATAATTATATTAACAA
1 TAATAATAA-TACATTAACAA
8865104 TAATAATAATA
1 TAATAATAATA
8865115 AAATTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 8 0.30
19 1 0.04
20 7 0.26
21 11 0.41
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (20 bp):
TAATAATAATACATTAACAA
Found at i:8865965 original size:7 final size:7
Alignment explanation
Indices: 8865953--8865986 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
8865943 CAATAATATA
8865953 ATATAAT
1 ATATAAT
8865960 ATATAAT
1 ATATAAT
8865967 ATATAAT
1 ATATAAT
*
8865974 AAAATAAT
1 -ATATAAT
8865982 ATATA
1 ATATA
8865987 TAAAGCACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
ATATAAT
Found at i:8865965 original size:12 final size:12
Alignment explanation
Indices: 8865948--8865986 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
8865938 TAACACAATA
8865948 ATATAATATAAT
1 ATATAATATAAT
8865960 ATATAATAT-AT
1 ATATAATATAAT
*
8865971 A-ATAAAATAAT
1 ATATAATATAAT
8865982 ATATA
1 ATATA
8865987 TAAAGCACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 6 0.25
11 6 0.25
12 12 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATATAATATAAT
Found at i:8872539 original size:18 final size:20
Alignment explanation
Indices: 8872513--8872562 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
8872503 TTTTCACTTT
*
8872513 TAATTATAAT-CATTAA-AA
1 TAATAATAATACATTAACAA
*
8872531 TAATAATAATTATATTAACAA
1 TAATAATAA-TACATTAACAA
8872552 TAATAATAATA
1 TAATAATAATA
8872563 AAATTTTTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 8 0.30
19 1 0.04
20 7 0.26
21 11 0.41
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (20 bp):
TAATAATAATACATTAACAA
Found at i:8873416 original size:7 final size:7
Alignment explanation
Indices: 8873404--8873437 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
8873394 ATGCAATATA
8873404 ATATAAT
1 ATATAAT
8873411 ATATAAT
1 ATATAAT
8873418 ATATAAT
1 ATATAAT
*
8873425 AAAATAAT
1 -ATATAAT
8873433 ATATA
1 ATATA
8873438 TAAAGCACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (7 bp):
ATATAAT
Found at i:8873416 original size:12 final size:12
Alignment explanation
Indices: 8873399--8873437 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
8873389 ACACAATGCA
8873399 ATATAATATAAT
1 ATATAATATAAT
8873411 ATATAATAT-AT
1 ATATAATATAAT
*
8873422 A-ATAAAATAAT
1 ATATAATATAAT
8873433 ATATA
1 ATATA
8873438 TAAAGCACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 6 0.25
11 6 0.25
12 12 0.50
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATATAATATAAT
Found at i:8873420 original size:17 final size:14
Alignment explanation
Indices: 8873398--8873441 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
8873388 AACACAATGC
8873398 AATATAATATAATATAT
1 AATAT-ATATAA-A-AT
8873415 AATATATAATAAAAT
1 AATATAT-ATAAAAT
8873430 AATATATATAAA
1 AATATATATAAA
8873442 GCACAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 9 0.35
16 3 0.12
17 9 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
AATATATATAAAAT
Found at i:8875910 original size:23 final size:24
Alignment explanation
Indices: 8875880--8875929 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
8875870 CTATGCGTGA
*
8875880 AATTGAAA-GTGACACTTCGGTGC
1 AATTGAAATGTGACACTTCGATGC
8875903 AATTGAAATGTGACACTTCGATGC
1 AATTGAAATGTGACACTTCGATGC
8875927 AAT
1 AAT
8875930 ACTATGATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (24 bp):
AATTGAAATGTGACACTTCGATGC
Found at i:8876854 original size:98 final size:98
Alignment explanation
Indices: 8876680--8876876 Score: 315
Period size: 98 Copynumber: 2.0 Consensus size: 98
8876670 GTACAATAAA
* *
8876680 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAACAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
8876745 CCTCTAGAATCCCAAACTC-GAAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAG-AATATTTCCTTT
* * *
8876778 ACTTTAAAACAACATCCACTTATCCAAGATTTACGAAATCACACCCAATACGTTATGGCACAATT
1 ACTTTAAAACAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
8876843 CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
8876876 A
1 A
8876877 TTATTTTTAA
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
98 90 0.99
99 1 0.01
ACGTcount: A:0.38, C:0.26, G:0.08, T:0.28
Consensus pattern (98 bp):
ACTTTAAAACAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:8878205 original size:19 final size:19
Alignment explanation
Indices: 8878181--8878274 Score: 98
Period size: 19 Copynumber: 4.8 Consensus size: 19
8878171 AATTATATAT
*
8878181 TCTAAGATTGCATATCATG
1 TCTAAGATTGCATATCATA
** *
8878200 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
8878219 TCTAAGATTGCATATATCATA
1 TCTAAGATTGC--ATATCATA
** **
8878240 TCTTGGATTGCGCATCATA
1 TCTAAGATTGCATATCATA
8878259 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
8878275 CTCAAAAATT
Statistics
Matches: 59, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
19 43 0.73
21 16 0.27
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:8878590 original size:44 final size:45
Alignment explanation
Indices: 8878478--8879039 Score: 290
Period size: 44 Copynumber: 12.9 Consensus size: 45
8878468 GGAATTAGTG
* *
8878478 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * *
8878523 CTTCAGTCTGC-CTCACTGTAACTTC-TGGAGGATAAGACTTG-CTT
1 CTTCAGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
* *
8878567 CCTT-AGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTAG--A-
1 -CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * *
8878609 -TGC-GATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGTG--AT
1 CTTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCCAT
* * * * ** **
8878652 -TTCAATCCGCTCTACTGCAACTTCAGGGAGATAGGA-TTATCGG
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * *
8878695 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * *
8878740 CTTCAGTCTGC-CTCACTGTAACTTCA-AGAGGATAAAACTTG-CTT
1 CTTCAGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
* *
8878784 ACTT-AGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACTAG--A-
1 -CTTCAGTC-TGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * * * * **
8878826 -TGC-GATATGCT-CTCTGTAACTTTAGAGAGATAAGA-TCTGTAAT
1 CTTCAG-TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGCCAT
* * * * **
8878869 -TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGA-TTGTCGG
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* * * * *
8878912 CTTTAATCTGCTCCACTGTAACTTCAGGAAGATAAGATTTGCCAT
1 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
* *
8878957 CTTCAGTCTGC-CTCACTGTAACTTCA-GGAGGATAAGACTTG-CTT
1 CTTCAGTCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCCAT
* **
8879001 ACTT-AGTATTG-TCCACCACAACTTCAGGGAGATAAGACT
1 -CTTCAGT-CTGCTCCACTGCAACTTCAGGGAGATAAGACT
8879040 AGATGCGATC
Statistics
Matches: 397, Mismatches: 81, Indels: 79
0.71 0.15 0.14
Matches are distributed among these distances:
39 1 0.00
40 47 0.12
41 11 0.03
42 4 0.01
43 16 0.04
44 194 0.49
45 124 0.31
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (45 bp):
CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCCAT
Found at i:8878821 original size:217 final size:217
Alignment explanation
Indices: 8878477--8879087 Score: 1008
Period size: 217 Copynumber: 2.8 Consensus size: 217
8878467 AGGAATTAGT
* * *
8878477 GCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * * *
8878542 AACTTCTGGAGGATAAGACTTGCTTCCTTAGTC-TGCTCCACTGCAACTTCAGGGAAATAAGACT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACT
* * *
8878606 AGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTCAATCCGCTCTACTGCA
130 AGATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTCAATCCGCTCCACTGCA
8878671 ACTTCAGGGAGATAGGATTATCG
195 ACTTCAGGGAGATAGGATTATCG
8878694 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* *
8878759 AACTTCAAGAGGATAAAACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
* * * *
8878824 GATGCGATATGCTCTCTGTAACTTTAGAGAGATAAGATCTGTAATTTTAATCTGCTCCACTGCAA
131 GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTCAATCCGCTCCACTGCAA
*
8878889 CTTCAGGGAGATAGGATTGTCG
196 CTTCAGGGAGATAGGATTATCG
* *
8878911 GCTTTAATCTGCTCCACTGTAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* *
8878976 AACTTCAGGAGGATAAGACTTGCTTACTTAGTATTGTCCACCACAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
*
8879041 GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATTTGTAATTT
131 GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTT
8879088 TCAACCTCCT
Statistics
Matches: 367, Mismatches: 26, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
217 365 0.99
218 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (217 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCGCAACTTCAGGGAGATAAGACTA
GATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTCAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTATCG
Found at i:8879205 original size:132 final size:132
Alignment explanation
Indices: 8879069--8879486 Score: 676
Period size: 132 Copynumber: 3.2 Consensus size: 132
8879059 TAACTTCAGA
* ** * *
8879069 GAGATAAGATTTGTAATTTTCAACCTCCTCCGCTGCTGCTCAGGGAGACAAGACTTGGTGGCTTA
1 GAGATAAGATATACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTA
* * *
8879134 AATCTACTTTCCACTATCTTGGAAATATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
66 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
8879199 GG
131 GG
* *
8879201 GAGATAAGATATACAATTTTCAACCTTCTCCGCTGCTGCTCAGTGAGACAAGGCTTGGTGACTTA
1 GAGATAAGATATACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTA
*
8879266 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTA
66 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
8879331 GG
131 GG
*
8879333 GAGATAAGATCTACAATCTTT-AACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTT
1 GAGATAAGATATACAAT-TTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTT
* * *
8879397 AAATCTGCTTCCCACTATCTTGGAAAGATAAGTTTCGCCGTCTTCGATCTGCTCTACTACTGTTT
65 AAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
8879462 AGG
130 AGG
*
8879465 GAGATAAGATCTACAATTTTCA
1 GAGATAAGATATACAATTTTCA
8879487 CTGATCTGTT
Statistics
Matches: 266, Mismatches: 18, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
131 3 0.01
132 260 0.98
133 3 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (132 bp):
GAGATAAGATATACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTA
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GG
Found at i:8879210 original size:44 final size:43
Alignment explanation
Indices: 8879160--8879474 Score: 120
Period size: 44 Copynumber: 7.2 Consensus size: 43
8879150 TCTTGGAAAT
* *
8879160 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
1 ATAAGATT-GCTGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
* ** * * * * * * *
8879204 ATAAGATATACAATTTTCAACCTTCTCCGCTGCTGCTCAGTGAG
1 ATAAGAT-TGCTGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
* * * * * *
8879248 ACAAGGCTTGGTGACTTAAATCTGCTTCCCACTA-T-CTT-GGAAAG
1 ATAA-GATTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAG
*
8879292 ATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
1 ATAAGATT-GCTGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
* ** * * * * * *
8879336 ATAAGATCTACAATCTTTAACCTTCTCCGCTGCTGCTCAGGGAG
1 ATAAGAT-TGCTGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
* * * * * *
8879380 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAAAG
1 ATAA-GATTGCTGTCTTCAATCTGC-T-CCACTACTGCTTAGG-GAG
* * * * *
8879424 ATAAGTTTCGCCGTCTTCGATCTGCTCTACTACTGTTTAGGGAG
1 ATAAGATT-GCTGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
8879468 ATAAGAT
1 ATAAGAT
8879475 CTACAATTTT
Statistics
Matches: 184, Mismatches: 69, Indels: 36
0.64 0.24 0.12
Matches are distributed among these distances:
42 11 0.06
43 13 0.07
44 138 0.75
45 14 0.08
46 8 0.04
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.31
Consensus pattern (43 bp):
ATAAGATTGCTGTCTTCAATCTGCTCCACTACTGCTTAGGGAG
Found at i:8885002 original size:98 final size:98
Alignment explanation
Indices: 8884828--8885024 Score: 313
Period size: 98 Copynumber: 2.0 Consensus size: 98
8884818 GTACAATAAA
* * *
8884828 ACTTTAAAAGAACATCCAGTCATCCAAGATTTAAGAAATCACACCCAATACGTCAGGGCACGATT
1 ACTTTAAAACAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTCAGGGCACAATT
*
8884893 CCTCTAGAATCCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
* *
8884926 ACTTTAAAACAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAACAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTCAGGGCACAATT
* * *
8884991 CCTTTAAAATCCCAAACTCGGGATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
8885024 A
1 A
8885025 TTATTTTTAA
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.37, C:0.26, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAACAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTCAGGGCACAATT
CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:8886347 original size:19 final size:19
Alignment explanation
Indices: 8886323--8886433 Score: 150
Period size: 19 Copynumber: 5.7 Consensus size: 19
8886313 TCATATATTA
8886323 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
** *
8886342 TAAGATTATATATCATCTC
1 TAAGATTGCATATCATATC
8886361 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
8886380 TAAGATTGCATATATCATATC
1 TAAGATTGC--ATATCATATC
** *
8886401 TTGGATTGCGTATCATATC
1 TAAGATTGCATATCATATC
8886420 TAAGATTGCATATC
1 TAAGATTGCATATC
8886434 CTCAAAAATT
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
19 61 0.78
21 17 0.22
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:8886408 original size:40 final size:40
Alignment explanation
Indices: 8886323--8886432 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 40
8886313 TCATATATTA
*
8886323 TAAGATTGCATATCATATCTAAGATT--ATATATCATCTC
1 TAAGATTGCATATCATATCTAAGATTGCATATATCATATC
8886361 TAAGATTGCATATCATATCTAAGATTGCATATATCATATC
1 TAAGATTGCATATCATATCTAAGATTGCATATATCATATC
** *
8886401 TTGGATTGCGTATCATATCTAAGATTGCATAT
1 TAAGATTGCATATCATATCTAAGATTGCATAT
8886433 CCTCAAAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
38 26 0.39
40 40 0.61
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.39
Consensus pattern (40 bp):
TAAGATTGCATATCATATCTAAGATTGCATATATCATATC
Found at i:8887390 original size:379 final size:379
Alignment explanation
Indices: 8886691--8887452 Score: 1524
Period size: 379 Copynumber: 2.0 Consensus size: 379
8886681 TAGGGTTTTA
8886691 GGTGATGAAAATTGAGATAATGAAAATTTTATGAAAATAGAGTGCATGCCACGATATTGAAATTA
1 GGTGATGAAAATTGAGATAATGAAAATTTTATGAAAATAGAGTGCATGCCACGATATTGAAATTA
8886756 TCACATCGCGACGACATATGACAGTAAGTGACGTGACAATGACATAAAACAGTAAGTGACGTCAC
66 TCACATCGCGACGACATATGACAGTAAGTGACGTGACAATGACATAAAACAGTAAGTGACGTCAC
8886821 AACGTGGAACCCCTAACGTTGCGAAGTTAGCCTGAAACTTTAGAAATTTCACAACTTAGTCCCTG
131 AACGTGGAACCCCTAACGTTGCGAAGTTAGCCTGAAACTTTAGAAATTTCACAACTTAGTCCCTG
8886886 TTCGATCTTATACTATTAAAAGAGTTGTCGAAAGCTCATATAAAATTTATACATTAGTTTGAATT
196 TTCGATCTTATACTATTAAAAGAGTTGTCGAAAGCTCATATAAAATTTATACATTAGTTTGAATT
8886951 GGATATGTATAATGATCCTAATAACTTAAATGTAATGATAAAATGAATTGAAGTGTCATTGCTTC
261 GGATATGTATAATGATCCTAATAACTTAAATGTAATGATAAAATGAATTGAAGTGTCATTGCTTC
8887016 GGCAACAAATGTAGCATTCTGATATCTTGACCCAATGACCGGGTCGAGTATGAG
326 GGCAACAAATGTAGCATTCTGATATCTTGACCCAATGACCGGGTCGAGTATGAG
8887070 GGTGATGAAAATTGAGATAATGAAAATTTTATGAAAATAGAGTGCATGCCACGATATTGAAATTA
1 GGTGATGAAAATTGAGATAATGAAAATTTTATGAAAATAGAGTGCATGCCACGATATTGAAATTA
8887135 TCACATCGCGACGACATATGACAGTAAGTGACGTGACAATGACATAAAACAGTAAGTGACGTCAC
66 TCACATCGCGACGACATATGACAGTAAGTGACGTGACAATGACATAAAACAGTAAGTGACGTCAC
8887200 AACGTGGAACCCCTAACGTTGCGAAGTTAGCCTGAAACTTTAGAAATTTCACAACTTAGTCCCTG
131 AACGTGGAACCCCTAACGTTGCGAAGTTAGCCTGAAACTTTAGAAATTTCACAACTTAGTCCCTG
8887265 TTCGATCTTATACTATTAAAAGAGTTGTCGAAAGCTCATATAAAATTTATACATTAGTTTGAATT
196 TTCGATCTTATACTATTAAAAGAGTTGTCGAAAGCTCATATAAAATTTATACATTAGTTTGAATT
8887330 GGATATGTATAATGATCCTAATAACTTAAATGTAATGATAAAATGAATTGAAGTGTCATTGCTTC
261 GGATATGTATAATGATCCTAATAACTTAAATGTAATGATAAAATGAATTGAAGTGTCATTGCTTC
8887395 GGCAACAAATGTAGCATTCTGATATCTTGACCCAATGACCGGGTCGAGTATGAG
326 GGCAACAAATGTAGCATTCTGATATCTTGACCCAATGACCGGGTCGAGTATGAG
8887449 GGTG
1 GGTG
8887453 TTATAGAAAT
Statistics
Matches: 383, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
379 383 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (379 bp):
GGTGATGAAAATTGAGATAATGAAAATTTTATGAAAATAGAGTGCATGCCACGATATTGAAATTA
TCACATCGCGACGACATATGACAGTAAGTGACGTGACAATGACATAAAACAGTAAGTGACGTCAC
AACGTGGAACCCCTAACGTTGCGAAGTTAGCCTGAAACTTTAGAAATTTCACAACTTAGTCCCTG
TTCGATCTTATACTATTAAAAGAGTTGTCGAAAGCTCATATAAAATTTATACATTAGTTTGAATT
GGATATGTATAATGATCCTAATAACTTAAATGTAATGATAAAATGAATTGAAGTGTCATTGCTTC
GGCAACAAATGTAGCATTCTGATATCTTGACCCAATGACCGGGTCGAGTATGAG
Found at i:8892075 original size:20 final size:21
Alignment explanation
Indices: 8892045--8892088 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
8892035 TCTAAATATA
8892045 TTTTTATAAAATTCTAT-TATT
1 TTTTTATAAAATT-TATGTATT
8892066 TTTTTA-AAAATTTATGTATT
1 TTTTTATAAAATTTATGTATT
8892086 TTT
1 TTT
8892089 ATTTATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 3 0.14
20 13 0.59
21 6 0.27
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTTATAAAATTTATGTATT
Found at i:8905899 original size:18 final size:18
Alignment explanation
Indices: 8905851--8905900 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
8905841 CCTTATTTAT
*
8905851 TAATAGTATATAAACAAA
1 TAATAGAATATAAACAAA
* *
8905869 TAATA-ATAGATAAATAAA
1 TAATAGA-ATATAAACAAA
8905887 TAATAGAATATAAA
1 TAATAGAATATAAA
8905901 ACAACCTTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 25 0.96
19 1 0.04
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (18 bp):
TAATAGAATATAAACAAA
Found at i:8906323 original size:10 final size:10
Alignment explanation
Indices: 8906308--8906337 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
8906298 ATTTGGACCT
8906308 TTATTTATTA
1 TTATTTATTA
8906318 TTATTTATTA
1 TTATTTATTA
8906328 TTATTT-TTA
1 TTATTTATTA
8906337 T
1 T
8906338 CTGTTTTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
TTATTTATTA
Found at i:8906684 original size:44 final size:44
Alignment explanation
Indices: 8906632--8906815 Score: 139
Period size: 44 Copynumber: 4.3 Consensus size: 44
8906622 GATCTGCTCT
8906632 CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCA
1 CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCA
* * * * * **
8906676 CTGCAACTTCTG-GAAGATAGGAT-TATCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAG-AGATAAGATCCA-AGGTTTTAATCCACTCCA
* * *** ** *
8906720 CTGCAACTTCA-AGGAGATAAGA-CTAA--ATACGATCTGCT-CT
1 CTGCAACTTCAGA-GAGATAAGATCCAAGGTTTTAATCCACTCCA
* *
8906760 CTGTAACTTCAAAGAGATAAGATCCAAGGTTTTAATCCACTCCA
1 CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCA
8906804 CTGCAACTTCAG
1 CTGCAACTTCAG
8906816 GAAGATAGGA
Statistics
Matches: 104, Mismatches: 26, Indels: 20
0.69 0.17 0.13
Matches are distributed among these distances:
40 20 0.19
41 12 0.12
43 8 0.08
44 63 0.61
45 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCA
Found at i:8906750 original size:128 final size:127
Alignment explanation
Indices: 8906596--8907258 Score: 580
Period size: 128 Copynumber: 5.1 Consensus size: 127
8906586 CTCCTGGTGT
8906596 AACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
1 AACTTCA-GGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
* * * *
8906661 TTTTAATCCACTCCACTGCAACTTCTGGAAGATAGGATTATCGGCTTTAATCTGCTCCACTGC
65 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGC
* *
8906724 AACTTCAAGGAGATAAGACTAAATACGATCTGCTCTCTGTAACTTCAAAGAGATAAGATCCAAGG
1 AACTTC-AGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
* * * * *
8906789 TTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAATCTGTTCCACTAC
65 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGC
* ** * *
8906852 AACTTCAGGGAGATAAGATTTGCCAT-CTTCAGTCTGCCTCACTGCAACTTCAG-GAGGATAAGA
1 AACTTCA-GGAGATAAGA-CT-AAATAC--GA-TCTG-CTCTCTGCAACTTCAGAGA-GATAAGA
* * * * * * ***
8906915 CTTGCCTA---CTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA---GATGCGATCTGC
58 --T-CCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGC
*
8906974 T-CTCTGC
120 TCCACTGC
* *** * * * *
8906981 AACTTCAGAGAGATAAGATCTAAGGTTTTAATCCGCTCACTGCAACTTCAGCGAGATAGGATTAC
1 AACTTCAG-GAGATAAGA-CTAA--ATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGA-T-C
* * * * * *
8907046 C--GGCTTTAGTCTGCTCCACTGCAACTTTAGGGAGATAAGATT-T-GCCATCTTCAATCTAC-C
60 CAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGC-T-TT-AATCTGCTC
8907106 TCACTGC
122 -CACTGC
**
8907113 AACTTCAGGATGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
1 AACTTCAGGA-GATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
* * * * *
8907178 TTGTAATCCGCTCCACTGCAACTTCAGGGAGATAAAATTATCAGCTTCAATCTGCTCCACTAC
65 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGC
8907241 AACTTCAGGCAGATAAGA
1 AACTTCAGG-AGATAAGA
8907259 TTTTCCATCT
Statistics
Matches: 436, Mismatches: 65, Indels: 68
0.77 0.11 0.12
Matches are distributed among these distances:
126 4 0.01
127 60 0.14
128 171 0.39
129 93 0.21
130 13 0.03
131 13 0.03
132 26 0.06
133 52 0.12
135 1 0.00
136 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (127 bp):
AACTTCAGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGT
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGC
Found at i:8906945 original size:44 final size:45
Alignment explanation
Indices: 8906799--8907349 Score: 217
Period size: 44 Copynumber: 12.7 Consensus size: 45
8906789 TTTTAATCCA
* * * *
8906799 CTCCACTGCAACTTCAGGA-AGATAGGATTATCGGCT--TTAATCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACT-T-GCCTACTTAGTCTG
* * *
8906843 TTCCACTACAACTTCAGG-GAGATAAGATTTGCC-ATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTA-CTT-AGTCTG
8906888 C-CTCACTGCAACTTCAGGAG-GATAAGACTTGCCTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
* * * *
8906932 CTCCACTGCAACTTCAGG-GAGATAAGACTAG-ATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
* * * * * *
8906973 CT-CTCTGCAACTTCA-GAGAGATAAGATCTAAG-GT-TTTAATCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCCTACTTAGTCTG
* * * **
8907016 CT-CACTGCAACTTCA-GCGAGATAGGA-TTACCGGCTTTAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTAC-TTAGTCTG
* * * *
8907059 CTCCACTGCAACTTTAGG-GAGATAAGATTTGCC-ATCTTCAATCTA
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTA-CTT-AGTCTG
* * * **
8907104 C-CTCACTGCAACTTCAGGA-TGATAAGAC-T---AAATGGGATCTG
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAG-TCTG
* * * * *
8907145 CT-CTCTGCAACTTCA-GAGAGATAAGA--T-CCAAGGTTGTAATCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTA--CT-TAGTCTG
* ** *
8907188 CTCCACTGCAACTTCAGG-GAGATAA-AATTATC-AGCTTCAATCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTA-CTT-AGTCTG
* * * * *
8907232 CTCCACTACAACTTCAGG-CAGATAAGATTTTCC-ATCTTCAGTTTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTA-CTT-AGTCTG
* * *
8907277 C-CTCACTGCAACTTCAGGAG-GATAAGACTTGCTTATTTAGTCTA
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
8907321 CTCCACTGCAACTTCAGG-GAGATAAGACT
1 CTCCACTGCAACTTCAGGAGAGATAAGACT
8907350 CGATCTGTTA
Statistics
Matches: 393, Mismatches: 68, Indels: 92
0.71 0.12 0.17
Matches are distributed among these distances:
39 4 0.01
40 40 0.10
41 16 0.04
42 8 0.02
43 47 0.12
44 163 0.41
45 111 0.28
46 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
Found at i:8906983 original size:173 final size:172
Alignment explanation
Indices: 8906596--8907305 Score: 634
Period size: 172 Copynumber: 4.1 Consensus size: 172
8906586 CTCCTGGTGT
* *
8906596 AACTTCAGG-GAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAG
1 AACTTCAGGAG-GATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG
* * * * * * *
8906660 GTTTTAATCCACTCCACTGCAACTTCTGGAAGATAGGATTAT-CGGCTTTAATCTGCTCCACTGC
65 G-TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATT-TCCAGCTTCAGTCTGCTCCACTGC
* ** * * *
8906724 AACTTCAAGGA-GATAAGA----CTAAATAC-GATCTG-CTCTCTGT
128 AACTTC-AGGAGGATAAGATTTGCCATCTTCAG-TCTGCCTCACTGC
* * * *** ** * *
8906764 AACTTCA-AAGAGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAG-GAAGATAGGAT
1 AACTTCAGGAG-GATAAGA-CTAA--ATGCGATCTGCT-CTCTGCAACTTCAGAG-AGATAAGAT
* * * * *
8906827 -TATCGGCTTTAATCTGTTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGC-C
60 CTA-AGG-TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTT-CCAGCTTCAGTCTGCTC
*
8906890 TCACTGCAACTTCAGGAGGATAAGACTTGCC-TACTT-AGTCTG-CTCCACTGC
122 -CACTGCAACTTCAGGAGGATAAGATTTGCCAT-CTTCAGTCTGCCT-CACTGC
*
8906941 AACTTCAGG-GAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG
1 AACTTCAGGAG-GATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG
* * * * *
8907005 GTTTTAATCCGCT-CACTGCAACTTCAGCGAGATAGGATTACCGGCTTTAGTCTGCTCCACTGCA
65 G-TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTCCAGCTTCAGTCTGCTCCACTGCA
* * *
8907069 ACTTTAGG-GAGATAAGATTTGCCATCTTCAATCTACCTCACTGC
129 ACTTCAGGAG-GATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
* * *
8907113 AACTTCAGGATGATAAGACTAAATGGGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGG
1 AACTTCAGGAGGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGG
* * *
8907178 TTGTAATCCGCTCCACTGCAACTTCAGGGAGATAAAATTAT-CAGCTTCAATCTGCTCCACTACA
66 TT-TAATCCGCTCCACTGCAACTTCAGGGAGATAAGATT-TCCAGCTTCAGTCTGCTCCACTGCA
* *
8907242 ACTTCAGGCA-GATAAGATTTTCCATCTTCAGTTTGCCTCACTGC
129 ACTTCAGG-AGGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
8907286 AACTTCAGGAGGATAAGACT
1 AACTTCAGGAGGATAAGACT
8907306 TGCTTATTTA
Statistics
Matches: 436, Mismatches: 74, Indels: 59
0.77 0.13 0.10
Matches are distributed among these distances:
168 16 0.04
169 3 0.01
170 1 0.00
171 52 0.12
172 163 0.37
173 161 0.37
174 9 0.02
176 8 0.02
177 23 0.05
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.28
Consensus pattern (172 bp):
AACTTCAGGAGGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGG
TTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTTCCAGCTTCAGTCTGCTCCACTGCAAC
TTCAGGAGGATAAGATTTGCCATCTTCAGTCTGCCTCACTGC
Found at i:8907130 original size:216 final size:217
Alignment explanation
Indices: 8906711--8907132 Score: 686
Period size: 216 Copynumber: 1.9 Consensus size: 217
8906701 TCGGCTTTAA
*
8906711 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTAAATACGATCTGCTCTCTGTAACTTCAAAGAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAAAGAG
*
8906776 ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAATC
66 ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTACCGGCTTTAATC
* * *
8906841 TGTTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGG
131 TGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTACCTCACTGCAACTTCAGG
8906906 AGGATAAGACTTGCCTACTTAG
196 AGGATAAGACTTGCCTACTTAG
* * * *
8906928 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAAGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAAAGAG
* * *
8906993 ATAAGATCTAAGGTTTTAATCCGCT-CACTGCAACTTCAGCG-AGATAGGATTACCGGCTTTAGT
66 ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAG-GAAGATAGGATTACCGGCTTTAAT
* *
8907056 CTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAATCTACCTCACTGCAACTTCAG
130 CTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTACCTCACTGCAACTTCAG
*
8907121 GATGATAAGACT
195 GAGGATAAGACT
8907133 AAATGGGATC
Statistics
Matches: 189, Mismatches: 15, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
216 105 0.56
217 84 0.44
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (217 bp):
TCTGCTCCACTGCAACTTCAAGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAAAGAG
ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTACCGGCTTTAATC
TGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTACCTCACTGCAACTTCAGG
AGGATAAGACTTGCCTACTTAG
Found at i:8907199 original size:216 final size:215
Alignment explanation
Indices: 8906711--8907212 Score: 604
Period size: 216 Copynumber: 2.3 Consensus size: 215
8906701 TCGGCTTTAA
* * * * * *
8906711 TCTGCTCCACTGCAACTTCA-AGGAGATAAGACTAA-ATACGATCTGCTCTCTGTAACTTCAAAG
1 TCTGCTCCACTGCAACTTCAGA-GAGATAAGAC-AAGATGCAATCCGCTCACTGCAACTTCAGAG
*
8906774 AGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAA
64 AGATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTACCGGCTTTAA
* * *
8906839 TCTGTTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA
129 TCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTACCTCACTGCAACTTCA
* * *
8906904 GGAGGATAAGACTTGCCTACTTAG
194 GGAGGATAAGACTT--CAAATGAG
* * * * *
8906928 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAG
1 TCTGCTCCACTGCAACTTCAGAGAGATAAGACAAGATGCAATCCGCTCACTGCAACTTCAGAGAG
* * *
8906993 ATAAGATCTAAGGTTTTAATCCGCT-CACTGCAACTTCAGCG-AGATAGGATTACCGGCTTTAGT
66 ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAG-GAAGATAGGATTACCGGCTTTAAT
* *
8907056 CTGCTCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAATCTACCTCACTGCAACTTCAG
130 CTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTACCTCACTGCAACTTCAG
* *
8907121 GATGATAAGAC-T-AAATGGG
195 GAGGATAAGACTTCAAATGAG
* * *
8907140 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCCAAGGTTGTAATCCGCTCCACTGCAACTTCA
1 -TCTGCTCCACTGCAACTTCAGAGAGATAAGA--CAA-GATGCAATCCGCT-CACTGCAACTTCA
*
8907204 GGGAGATAA
61 GAGAGATAA
8907213 AATTATCAGC
Statistics
Matches: 249, Mismatches: 28, Indels: 17
0.85 0.10 0.06
Matches are distributed among these distances:
212 25 0.10
213 6 0.02
214 2 0.01
215 10 0.04
216 125 0.50
217 81 0.33
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (215 bp):
TCTGCTCCACTGCAACTTCAGAGAGATAAGACAAGATGCAATCCGCTCACTGCAACTTCAGAGAG
ATAAGATCCAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATAGGATTACCGGCTTTAATC
TGCTCCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAATCTACCTCACTGCAACTTCAGG
AGGATAAGACTTCAAATGAG
Found at i:8927745 original size:9 final size:10
Alignment explanation
Indices: 8927719--8927747 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
8927709 ATTTGGACCT
8927719 TTATTTTTTA
1 TTATTTTTTA
8927729 TTATTTTTTA
1 TTATTTTTTA
8927739 TTATTTTTT
1 TTATTTTTT
8927748 CTGTTTTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (10 bp):
TTATTTTTTA
Found at i:8928679 original size:24 final size:24
Alignment explanation
Indices: 8928651--8928702 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
8928641 TTAGTAGGTC
*
8928651 AAATAAACTATGCTAAT-AATAGCT
1 AAATAAACTATACTAATAAATA-CT
* *
8928675 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8928699 AAAT
1 AAAT
8928703 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8928978 original size:24 final size:24
Alignment explanation
Indices: 8928946--8928997 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
8928936 CTGGGTCTGA
8928946 TTTTCACGAACACAGTGCCCTAAC
1 TTTTCACGAACACAGTGCCCTAAC
8928970 TTTTCACGAACACAGTGCCCTAAC
1 TTTTCACGAACACAGTGCCCTAAC
8928994 TTTT
1 TTTT
8928998 TAAAATCTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.27, C:0.31, G:0.12, T:0.31
Consensus pattern (24 bp):
TTTTCACGAACACAGTGCCCTAAC
Found at i:8937259 original size:16 final size:17
Alignment explanation
Indices: 8937240--8937272 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8937230 TTTACCCTTA
*
8937240 ATTTTTTTTAA-TTTTT
1 ATTTTTATTAAGTTTTT
8937256 ATTTTTATTAAGTTTTT
1 ATTTTTATTAAGTTTTT
8937273 TTTAATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (17 bp):
ATTTTTATTAAGTTTTT
Found at i:8937291 original size:26 final size:26
Alignment explanation
Indices: 8937237--8937296 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
8937227 TAGTTTACCC
***
8937237 TTAATTTTTTTTAATTTTTATTTTTA
1 TTAATTTTTTTTAATTTTTATTAAAA
8937263 TTAAGTTTTTTTTAATTTTTA-TAAAA
1 TTAA-TTTTTTTTAATTTTTATTAAAA
8937289 TTAATTTT
1 TTAATTTT
8937297 CTATAATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
25 4 0.13
26 10 0.33
27 16 0.53
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (26 bp):
TTAATTTTTTTTAATTTTTATTAAAA
Found at i:8937296 original size:21 final size:21
Alignment explanation
Indices: 8937247--8937296 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
8937237 TTAATTTTTT
* * *
8937247 TTAATTTTTATTTTTATTAAG
1 TTAATTTTAATTTTTATAAAA
**
8937268 TTTTTTTTAATTTTTATAAAA
1 TTAATTTTAATTTTTATAAAA
8937289 TTAATTTT
1 TTAATTTT
8937297 CTATAATTAT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (21 bp):
TTAATTTTAATTTTTATAAAA
Found at i:8937686 original size:78 final size:78
Alignment explanation
Indices: 8937604--8937759 Score: 303
Period size: 78 Copynumber: 2.0 Consensus size: 78
8937594 TATGACAGTT
8937604 AGATTATTAAAATATTAATTGTACTAAAAAATACTGAAGGATGCAAAGCAACTTTAGCTTTATAC
1 AGATTATTAAAATATTAATTGTACTAAAAAATACTGAAGGATGCAAAGCAACTTTAGCTTTATAC
8937669 AAATATAAATGGA
66 AAATATAAATGGA
8937682 AGATTATTAAAATATTAATTGTACTAAAAAATACTGAAGGATGCAAAGCAACTTTAGCTTTATAC
1 AGATTATTAAAATATTAATTGTACTAAAAAATACTGAAGGATGCAAAGCAACTTTAGCTTTATAC
*
8937747 CAATATAAATGGA
66 AAATATAAATGGA
8937760 TCTCTCCCTT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.31
Consensus pattern (78 bp):
AGATTATTAAAATATTAATTGTACTAAAAAATACTGAAGGATGCAAAGCAACTTTAGCTTTATAC
AAATATAAATGGA
Found at i:8939792 original size:9 final size:8
Alignment explanation
Indices: 8939774--8939862 Score: 63
Period size: 9 Copynumber: 10.2 Consensus size: 8
8939764 GATATAATCA
8939774 AATATAAT
1 AATATAAT
8939782 AATATTAAT
1 AATA-TAAT
*
8939791 AATACAA-
1 AATATAAT
**
8939798 AGCGATAAT
1 A-ATATAAT
*
8939807 AATAGCAAT
1 AATA-TAAT
8939816 AATAATAAT
1 AAT-ATAAT
8939825 AATAATAAT
1 AAT-ATAAT
8939834 AATAATAAT
1 AAT-ATAAT
8939843 AATAATAAT
1 AAT-ATAAT
8939852 AATAATAAT
1 AAT-ATAAT
8939861 AA
1 AA
8939863 GGAAACATTC
Statistics
Matches: 68, Mismatches: 8, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
7 1 0.01
8 10 0.15
9 56 0.82
10 1 0.01
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (8 bp):
AATATAAT
Found at i:8939808 original size:3 final size:3
Alignment explanation
Indices: 8939802--8939862 Score: 104
Period size: 3 Copynumber: 20.3 Consensus size: 3
8939792 ATACAAAGCG
**
8939802 ATA ATA ATA GCA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8939850 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
8939863 GGAAACATTC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:8942057 original size:21 final size:21
Alignment explanation
Indices: 8942017--8942057 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8942007 TTATTTAATT
*
8942017 AATTTTATTTTATATCTATTA
1 AATTTTATTTTACATCTATTA
8942038 AATTTATATTTTACAT-TATT
1 AATTT-TATTTTACATCTATT
8942058 TTTAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (21 bp):
AATTTTATTTTACATCTATTA
Found at i:8942323 original size:19 final size:19
Alignment explanation
Indices: 8942295--8942335 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
8942285 TGTCCAAGTG
*
8942295 CATAACTAGTATTACACCA
1 CATAACTAGTACTACACCA
*
8942314 CATAATTAGTACTACACCA
1 CATAACTAGTACTACACCA
8942333 CAT
1 CAT
8942336 TAAAACATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.27, G:0.05, T:0.27
Consensus pattern (19 bp):
CATAACTAGTACTACACCA
Found at i:8955357 original size:18 final size:17
Alignment explanation
Indices: 8955310--8955363 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 17
8955300 TTATGAACTT
*
8955310 TTTATATATTTT--TTA
1 TTTATAAATTTTAATTA
* *
8955325 TTT-TTAATTTTAATTT
1 TTTATAAATTTTAATTA
8955341 TTTATAAATTTTAAATTA
1 TTTATAAATTTT-AATTA
8955359 TTTAT
1 TTTAT
8955364 TGGCATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
14 6 0.20
15 3 0.10
16 5 0.17
17 7 0.23
18 9 0.30
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTTATAAATTTTAATTA
Found at i:8964681 original size:13 final size:13
Alignment explanation
Indices: 8964665--8964691 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8964655 AAAAACATAT
8964665 ATTAAACATAACA
1 ATTAAACATAACA
8964678 ATTAAACATAACA
1 ATTAAACATAACA
8964691 A
1 A
8964692 ATAATAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.15, G:0.00, T:0.22
Consensus pattern (13 bp):
ATTAAACATAACA
Found at i:8965830 original size:19 final size:19
Alignment explanation
Indices: 8965806--8965918 Score: 172
Period size: 19 Copynumber: 5.8 Consensus size: 19
8965796 AATTTTTGAG
8965806 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
8965825 GATATGCAATCTAAGATAT
1 GATATGCAATCTTAGATAT
8965844 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
8965865 GATATGCAATCTTAGAGAT
1 GATATGCAATCTTAGATAT
**
8965884 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
8965903 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
8965919 ATATATGATT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
19 66 0.79
21 18 0.21
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:8965851 original size:40 final size:40
Alignment explanation
Indices: 8965807--8965914 Score: 184
Period size: 40 Copynumber: 2.8 Consensus size: 40
8965797 ATTTTTGAGG
*
8965807 ATATGCAATCTTAGATATGATATGCAATCTAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTAAGAGATGAT
*
8965847 ATATGCAATCTTAGATATGATATGCAATCTTAGAGATGAT
1 ATATGCAATCTTAGATATGATATGCAATCTAAGAGATGAT
8965887 ATAT--AATCTTAGATATGATATGCAATCT
1 ATATGCAATCTTAGATATGATATGCAATCT
8965915 TAGAATATAT
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
38 24 0.36
40 42 0.64
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCTAAGAGATGAT
Found at i:8965873 original size:59 final size:56
Alignment explanation
Indices: 8965806--8965925 Score: 170
Period size: 59 Copynumber: 2.1 Consensus size: 56
8965796 AATTTTTGAG
* *
8965806 GATATGCAATCTTAGATATGATATGCAATCTAAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGAGATGATATACAATCTAAGATATG--ATATGCAATCTTAGA-AT
* *
8965865 GATATGCAATCTTAGAGATGATATATAATCTTAGATATGATATGCAATCTTAGAAT
1 GATATGCAATCTTAGAGATGATATACAATCTAAGATATGATATGCAATCTTAGAAT
8965921 -ATATG
1 GATATG
8965926 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
55 5 0.09
56 2 0.04
57 15 0.26
59 35 0.61
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (56 bp):
GATATGCAATCTTAGAGATGATATACAATCTAAGATATGATATGCAATCTTAGAAT
Found at i:8966697 original size:24 final size:24
Alignment explanation
Indices: 8966669--8966715 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8966659 CATGTATATA
8966669 TATATTTTAAAACGAATATTTTCC
1 TATATTTTAAAACGAATATTTTCC
** *
8966693 TATATTTTTTAATGAATATTTTC
1 TATATTTTAAAACGAATATTTTC
8966716 ATATTTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.09, G:0.04, T:0.53
Consensus pattern (24 bp):
TATATTTTAAAACGAATATTTTCC
Found at i:8967507 original size:98 final size:98
Alignment explanation
Indices: 8967383--8967577 Score: 336
Period size: 98 Copynumber: 2.0 Consensus size: 98
8967373 AAAAATCATG
*
8967383 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
8967448 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* * * *
8967481 AAGGAAATATTCTGGGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
8967546 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
8967578 TTTATTGTAT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.27, C:0.10, G:0.26, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:8979730 original size:262 final size:262
Alignment explanation
Indices: 8979006--8980207 Score: 2107
Period size: 262 Copynumber: 4.6 Consensus size: 262
8978996 CTGCATTGAC
*
8979006 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAG--AGTGGGAAGCAGATTTAAGCCAC
** *
8979071 CAAGCCTTGTCTCCCTGAATAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
64 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
8979136 GTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
129 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
*
8979201 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAG
194 ACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAG
*
8979266 CAGC
259 CAGT
* *
8979270 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAG--AGTGGGAAGCAGATTTAAGCCAC
*
8979335 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
64 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
8979400 GTAGTGGAGCAGATCGAAGACGGCGAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
129 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
* *
8979465 ACCAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTATAGATCTTATCTTCCTAAG
194 ACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAG
8979530 CAGT
259 CAGT
8979534 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTGGGAAGCAGATTTAAGCCACCA
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTGGGAAGCAGATTTAAGCCACCA
* *
8979599 AGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTAAAGATTATAGATCTTATCTCCCTAAGCAGT
66 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGT
*
8979664 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
131 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
8979729 CAAGCCTTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
196 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8979794 GT
261 GT
8979796 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTGGGAAGCAGATTTAAGCCACCA
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTGGGAAGCAGATTTAAGCCACCA
* *
8979861 AGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGT
66 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGT
*
8979926 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
131 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
8979991 CAAGCCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
196 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8980056 GT
261 GT
* * *
8980058 AATGGAGCGGATCGAAGACGGCGAATCTTATCTTTCCAATATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCC-A-AGAGTGGGAAGCAGATTTAAGCCAC
* *
8980123 CAAGCCTTGTCTCCCTTAGCAGCAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
64 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
8980188 ATAGTGGAGCAGATCGAAGA
129 GTAGTGGAGCAGATCGAAGA
8980208 TGACAAGTCT
Statistics
Matches: 897, Mismatches: 39, Indels: 4
0.95 0.04 0.00
Matches are distributed among these distances:
262 502 0.56
263 1 0.00
264 394 0.44
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (262 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGAGTGGGAAGCAGATTTAAGCCACCA
AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
GT
Found at i:8980219 original size:44 final size:44
Alignment explanation
Indices: 8979119--8980222 Score: 355
Period size: 44 Copynumber: 25.2 Consensus size: 44
8979109 AGATTATAGA
* * *
8979119 TCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAA-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-AAG
* * *
8979163 TCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGA-CAAG
* * * * * * ** *
8979207 CCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTA-TAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
* *
8979250 ATCTTATCTCCCTAAGCAGCAGTGGAGCAGATCGAAGACGACGAA-
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-AAG
* * *
8979295 TCTTATCTTTCC-AAG-A-TAGTGGAAAGCAGATTTAAG-CCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGTGG--AGCAGATTGAAGACGA-CAAG
* * * * * ** *
8979339 CCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTA-TAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
* *
8979382 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA-
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-AAG
* * * *
8979427 TATTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGA-CAAG
* * * * * * ** *
8979471 CCTTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTA-TAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
* * *
8979514 ATCTTATCTTCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA-
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-AAG
* * *
8979559 TCTTATCTTTCC-AAG-AGT-G-GGAAGCAGATTTAAG-CCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGTGG-AGCAGATTGAAGACGA-CAAG
* * * * * * * * ** *
8979601 CCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTAAAGATTA-TAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
* * *
8979644 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAA-
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-AAG
* * *
8979689 TCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGA-CAAG
* * * * * * ** *
8979733 CCTTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAGATTA-TAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
* *
8979776 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAA-
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-AAG
* * *
8979821 TCTTATCTTTCC-AAG-AGT-G-GGAAGCAGATTTAAG-CCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGTGG-AGCAGATTGAAGACGA-CAAG
* * * * ** *
8979863 CCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTA-TAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
* **
8979906 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAA-
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGAC-GACAAG
* * *
8979951 TCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGA-CAAG
* * * * ** *
8979995 CCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTA-TAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
* * * *
8980038 ATCTTATCTCCCTAAGCAGTAATGGAGCGGATCGAAGACGGCGAA-
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGAC-AAG
* * * *
8980083 TCTTATCTTTCC-AA-TA-TAGTGGGAAGCAGATTTAAG-CCACCAAG
1 TCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAGACGA-CAAG
* * * * ** * ** *
8980127 CCTTGTCTCCCTTAGCAGCAGTGGAATAGGTTGAAGATTA-TAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
* * *
8980170 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGATGACAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
8980215 TCTTATCT
1 TCTTATCT
8980223 TCTTGAAATT
Statistics
Matches: 747, Mismatches: 218, Indels: 190
0.65 0.19 0.16
Matches are distributed among these distances:
41 15 0.02
42 63 0.08
43 78 0.10
44 511 0.68
45 55 0.07
46 25 0.03
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGACGACAAG
Found at i:8980223 original size:132 final size:132
Alignment explanation
Indices: 8979006--8980207 Score: 2124
Period size: 132 Copynumber: 9.1 Consensus size: 132
8978996 CTGCATTGAC
*
8979006 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* ** *
8979071 CAAGCCTTGTCTCCCTGAATAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8979136 GT
131 GT
*
8979138 AGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
8979203 CAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
8979268 GC
131 GT
* *
8979270 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
8979335 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8979400 GT
131 GT
*
8979402 AGTGGAGCAGATCGAAGACGGCGAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
8979467 CAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTATAGATCTTATCTTCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8979532 GT
131 GT
8979534 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAG--AGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
8979597 CAAGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTAAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8979662 GT
131 GT
*
8979664 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
8979729 CAAGCCTTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8979794 GT
131 GT
8979796 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAG--AGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
8979859 CAAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8979924 GT
131 GT
*
8979926 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
8979991 CAAGCCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8980056 GT
131 GT
* * *
8980058 AATGGAGCGGATCGAAGACGGCGAATCTTATCTTTCCAATATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
8980123 CAAGCCTTGTCTCCCTTAGCAGCAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
8980188 AT
131 GT
8980190 AGTGGAGCAGATCGAAGA
1 AGTGGAGCAGATCGAAGA
8980208 TGACAAGTCT
Statistics
Matches: 1023, Mismatches: 43, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
130 251 0.25
132 772 0.75
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
GT
Found at i:8980223 original size:394 final size:395
Alignment explanation
Indices: 8979006--8980207 Score: 2131
Period size: 394 Copynumber: 3.0 Consensus size: 395
8978996 CTGCATTGAC
*
8979006 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGA-AGTGGGAAGCAGATTTAAGCCAC
* **
8979071 CAAGCCTTGTCTCCCTGAATAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
65 CAAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
*
8979136 GTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
130 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
8979201 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAG
195 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAG
* * *
8979266 CAGCAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGAAAGCAGATTTAAG
260 CAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
8979331 CCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTA
325 CCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTA
8979396 AGCAGT
390 AGCAGT
*
8979402 AGTGGAGCAGATCGAAGACGGCGAATATTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGA-AGTGGGAAGCAGATTTAAGCCAC
* * *
8979467 CAAGCCTTATCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTATAGATCTTATCTTCCTAAGCA
65 CAAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
8979532 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAG--AGTGGGAAGCAGATTTAAGCC
130 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
* *
8979595 ACCAAGCCTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTAAAGATTATAGATCTTATCTCCCTAAG
195 ACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAG
*
8979660 CAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
260 CAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
*
8979725 CCACCAAGCCTTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTA
325 CCACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTA
8979790 AGCAGT
390 AGCAGT
8979796 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAG-AGTGGGAAGCAGATTTAAGCCACC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGAAGTGGGAAGCAGATTTAAGCCACC
8979860 AAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAG
66 AAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAG
*
8979925 TAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
131 TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
* *
8979990 CCAAGCCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGC
196 CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGC
* * *
8980055 AGTAATGGAGCGGATCGAAGACGGCGAATCTTATCTTTCCAATATAGTGGGAAGCAGATTTAAGC
261 AGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
* * *
8980120 CACCAAGCCTTGTCTCCCTTAGCAGCAGTGGAATAGGTTGAAGATTATAGATCTTATCTCCCTAA
326 CACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAA
*
8980185 GCAAT
391 GCAGT
8980190 AGTGGAGCAGATCGAAGA
1 AGTGGAGCAGATCGAAGA
8980208 TGACAAGTCT
Statistics
Matches: 770, Mismatches: 34, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
392 126 0.16
394 481 0.62
396 163 0.21
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (395 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGAAGTGGGAAGCAGATTTAAGCCACC
AAGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC
CACCAAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTATAGATCTTATCTCCCTAA
GCAGT
Found at i:8981769 original size:26 final size:24
Alignment explanation
Indices: 8981739--8981790 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
8981729 ATTCACATGC
*
8981739 TTAATT-TATTTAATTTTGATGTTATT
1 TTAATTGT-TTTAAATTT-ATGTT-TT
8981765 TTAATTGTTTTAAATTTATGTTTT
1 TTAATTGTTTTAAATTTATGTTTT
8981789 TT
1 TT
8981791 GTTTCAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.17
25 5 0.21
26 14 0.58
27 1 0.04
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (24 bp):
TTAATTGTTTTAAATTTATGTTTT
Found at i:8982240 original size:98 final size:98
Alignment explanation
Indices: 8982117--8982309 Score: 305
Period size: 98 Copynumber: 2.0 Consensus size: 98
8982107 AAAAATCATG
* * *
8982117 AAGGGAATATTCCGAGTTCGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTCGAGATTCTAAAGGAATCGTGCCCTAACCTATTGGGTGTGATTTCTT
*
8982182 AAATCTTGGATAAGTGGATGTTCTTTTAAATTA
66 AAATCTTGGATAAGTGGATGCTCTTTTAAATTA
* * * *
8982215 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACCTATTGGGTGTGGTTTCTT
1 AAGGAAATATTCCGAGTTCGAGATTCTAAAGGAATCGTGCCCTAACCTATTGGGTGTGATTTCTT
*
8982280 AAATCTTGGATGAGTGGATGCTCTTTTAAA
66 AAATCTTGGATAAGTGGATGCTCTTTTAAA
8982310 ATTTTTATAT
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTCGAGATTCTAAAGGAATCGTGCCCTAACCTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGCTCTTTTAAATTA
Found at i:8982766 original size:32 final size:31
Alignment explanation
Indices: 8982700--8982766 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
8982690 GACAAGAATA
* *
8982700 TTTTAAAATTTTAAAAAAAAATTTATTAAGCT
1 TTTTAAAATTTT-AAAAAAAATTAATTAACCT
8982732 TTTTAAAATTTT-AAAAAAATTAAATTAGACCT
1 TTTTAAAATTTTAAAAAAAATT-AATTA-ACCT
8982764 TTT
1 TTT
8982767 ATATTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 9 0.29
31 4 0.13
32 18 0.58
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (31 bp):
TTTTAAAATTTTAAAAAAAATTAATTAACCT
Found at i:8993101 original size:24 final size:24
Alignment explanation
Indices: 8993073--8993124 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8993063 TTTCTAGAAG
* *
8993073 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
8993097 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
8993121 ATTT
1 ATTT
8993125 GACCTACGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:8993252 original size:14 final size:15
Alignment explanation
Indices: 8993233--8993266 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8993223 TATGTTTTGA
8993233 GGGTTCGTTG-TTTT
1 GGGTTCGTTGTTTTT
*
8993247 GGGTTCTTTGTTTTT
1 GGGTTCGTTGTTTTT
8993262 GGGTT
1 GGGTT
8993267 TCGGAGTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.00, C:0.06, G:0.35, T:0.59
Consensus pattern (15 bp):
GGGTTCGTTGTTTTT
Found at i:8996783 original size:20 final size:20
Alignment explanation
Indices: 8996758--8996796 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8996748 AATATTTTCC
*
8996758 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
8996778 AGTAAAACATTTTCCAGAA
1 AGTAAAACATTTTACAGAA
8996797 TTCATTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.13, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:8996806 original size:34 final size:35
Alignment explanation
Indices: 8996746--8996812 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
8996736 CAAACACCAG
*
8996746 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
8996781 AAAACATTTTCCAG-AATTCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
8996813 CATTTTACTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:8998255 original size:31 final size:31
Alignment explanation
Indices: 8998220--8998395 Score: 201
Period size: 31 Copynumber: 5.7 Consensus size: 31
8998210 GTATATGTTT
* * *
8998220 TATACATTGCTGAATTTGATTCGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
8998251 TATACATTGCCAAATTTGATTTTTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATGGA
*
8998282 TATACATAGCCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * * *
8998313 TATTCATTGCTGATTTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* * *
8998344 TATACATTGCCAAATTTGATTCGTTTATGGA
1 TATACATTGCCGAATTTGATTTGTATATGGA
* *
8998375 TATATATTGTCGAA-TTGATTT
1 TATACATTGCCGAATTTGATTT
8998396 CAGCATTGGA
Statistics
Matches: 119, Mismatches: 26, Indels: 1
0.82 0.18 0.01
Matches are distributed among these distances:
30 6 0.05
31 113 0.95
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATGGA
Found at i:8998373 original size:93 final size:92
Alignment explanation
Indices: 8998224--8998395 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 92
8998214 ATGTTTTATA
* *
8998224 CATTGCTGAATTTGATTCGTATATAGATATACATTGCCAAATTTGATTTTTATATGGTTATACAT
1 CATTGCTGAATTTGATTCGTATATAGATATACATTGCCAAATTTGATTGTTATATGGATATACAT
8998289 AGCCGAATTTGATTTGTATATGGATATT
66 AGCCGAA-TTGATTTGTATATGGATATT
* * *
8998317 CATTGCTGATTTTGATTTGTATATAGATATACATTGCCAAATTTGATTCGTT-TATGGATATATA
1 CATTGCTGAATTTGATTCGTATATAGATATACATTGCCAAATTTGATT-GTTATATGGATATACA
* *
8998381 TTGTCGAATTGATTT
65 TAGCCGAATTGATTT
8998396 CAGCATTGGA
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
92 7 0.10
93 62 0.87
94 2 0.03
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.45
Consensus pattern (92 bp):
CATTGCTGAATTTGATTCGTATATAGATATACATTGCCAAATTTGATTGTTATATGGATATACAT
AGCCGAATTGATTTGTATATGGATATT
Found at i:9000848 original size:24 final size:24
Alignment explanation
Indices: 9000804--9000855 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
9000794 TTTCTAAAAG
* *
9000804 ATTTAGTATTTATTAATATAATAT
1 ATTTAGCATTTATTAACATAATAT
* *
9000828 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAACATAATAT
9000852 ATTT
1 ATTT
9000856 GACCTACAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAACATAATAT
Found at i:9007231 original size:18 final size:17
Alignment explanation
Indices: 9007201--9007236 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
9007191 AAAATCATTA
9007201 ATTAAATTCTTGAAAAT
1 ATTAAATTCTTGAAAAT
*
9007218 ATTATAATTTTTGAAAAT
1 ATTA-AATTCTTGAAAAT
9007236 A
1 A
9007237 AAAATTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (17 bp):
ATTAAATTCTTGAAAAT
Found at i:9009469 original size:91 final size:91
Alignment explanation
Indices: 9009298--9009484 Score: 223
Period size: 91 Copynumber: 2.1 Consensus size: 91
9009288 TTTCTAAAAC
* **
9009298 TTTACCAATATTTCTAAGGCTCTACCAAAGATTTCCTTAGTGTCCCAAACCCAATTAACTCAACA
1 TTTACCAATATTTCTAAGGCTCTACCAAAGATTTCCTTAATGTCCCAAACCCAACCAACTCAACA
* * ** *
9009363 TTTTGCCATTTCAAAATGTATATGGA
66 TTATGACATACCAAAATGTATAAGGA
* * * **
9009389 TTTACCAATATTTTTAAGAG-TTTACCAAAGATTTCCTTAATGTGCCAAACCTGACCAACTCAAC
1 TTTACCAATATTTCTAAG-GCTCTACCAAAGATTTCCTTAATGTCCCAAACCCAACCAACTCAAC
* *
9009453 ATTATGACATACCAAAATTTCTAAGGA
65 ATTATGACATACCAAAATGTATAAGGA
9009480 TTTAC
1 TTTAC
9009485 TAAAATTTGT
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
91 79 0.99
92 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.10, T:0.34
Consensus pattern (91 bp):
TTTACCAATATTTCTAAGGCTCTACCAAAGATTTCCTTAATGTCCCAAACCCAACCAACTCAACA
TTATGACATACCAAAATGTATAAGGA
Found at i:9009491 original size:20 final size:20
Alignment explanation
Indices: 9009466--9009645 Score: 102
Period size: 20 Copynumber: 9.1 Consensus size: 20
9009456 ATGACATACC
9009466 AAAATTTCTAAGGATTTACT
1 AAAATTTCTAAGGATTTACT
* *
9009486 AAAATTTGTAAAGATTTA-T
1 AAAATTTCTAAGGATTTACT
*
9009505 AAAAATATT-TGAGGATTTA-T
1 -AAAAT-TTCTAAGGATTTACT
* *
9009525 CAAAATTTCTTA-GTTTATACT
1 -AAAATTTCTAAGGATT-TACT
* *
9009546 AAAATATCTAAGGATTTACC
1 AAAATTTCTAAGGATTTACT
* * * * *
9009566 ATAATTTGTAAAGA-TCACC
1 AAAATTTCTAAGGATTTACT
* *
9009585 AAAAATTCTAAGGATTTACC
1 AAAATTTCTAAGGATTTACT
* * *
9009605 ATAATTTATTAGG-TTATACT
1 AAAATTTCTAAGGATT-TACT
* *
9009625 AAAATATCTAAAGATTTACT
1 AAAATTTCTAAGGATTTACT
9009645 A
1 A
9009646 TAAGGTTATA
Statistics
Matches: 120, Mismatches: 31, Indels: 18
0.71 0.18 0.11
Matches are distributed among these distances:
19 22 0.18
20 90 0.75
21 8 0.07
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.38
Consensus pattern (20 bp):
AAAATTTCTAAGGATTTACT
Found at i:9009521 original size:40 final size:41
Alignment explanation
Indices: 9009465--9009645 Score: 128
Period size: 40 Copynumber: 4.5 Consensus size: 41
9009455 TATGACATAC
*
9009465 CAAAATTTCTAAGGATTTACTAAAATTTGTAAAGATTTATA
1 CAAAATATCTAAGGATTTACTAAAATTTGTAAAGATTTATA
* * * *
9009506 -AAAATATTTGAGGATTTA-TCAAAATTTCT-TAG-TTTATA
1 CAAAATATCTAAGGATTTACT-AAAATTTGTAAAGATTTATA
* * * *
9009544 CTAAAATATCTAAGGATTTACCATAATTTGTAAAGA-TCA-C
1 C-AAAATATCTAAGGATTTACTAAAATTTGTAAAGATTTATA
* * * * *
9009584 CAAAA-ATTCTAAGGATTTACCATAATTTAT-TAG-GTTATA
1 CAAAATA-TCTAAGGATTTACTAAAATTTGTAAAGATTTATA
*
9009623 CTAAAATATCTAAAGATTTACTA
1 C-AAAATATCTAAGGATTTACTA
9009646 TAAGGTTATA
Statistics
Matches: 110, Mismatches: 19, Indels: 23
0.72 0.12 0.15
Matches are distributed among these distances:
38 11 0.10
39 30 0.27
40 64 0.58
41 5 0.05
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (41 bp):
CAAAATATCTAAGGATTTACTAAAATTTGTAAAGATTTATA
Found at i:9009641 original size:79 final size:80
Alignment explanation
Indices: 9009461--9009648 Score: 236
Period size: 79 Copynumber: 2.4 Consensus size: 80
9009451 ACATTATGAC
* * * * * * * *
9009461 ATACCAAAATTTCTAAGGATTTACTAAAATTTGTAAAGATTTATAAAAATATTTGAGGATTTATC
1 ATACTAAAATATCTAAGGATTTACTATAATTTGTAAAGATTCACAAAAATATCTAAGGATTTACC
* *
9009526 AAAATTTCTTAGTTT
66 AAAATTTATTAGGTT
*
9009541 ATACTAAAATATCTAAGGATTTACCATAATTTGTAAAGA-TCACCAAAAAT-TCTAAGGATTTAC
1 ATACTAAAATATCTAAGGATTTACTATAATTTGTAAAGATTCA-CAAAAATATCTAAGGATTTAC
*
9009604 CATAATTTATTAGGTT
65 CAAAATTTATTAGGTT
*
9009620 ATACTAAAATATCTAAAGATTTACTATAA
1 ATACTAAAATATCTAAGGATTTACTATAA
9009649 GGTTATACTA
Statistics
Matches: 93, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
79 52 0.56
80 41 0.44
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (80 bp):
ATACTAAAATATCTAAGGATTTACTATAATTTGTAAAGATTCACAAAAATATCTAAGGATTTACC
AAAATTTATTAGGTT
Found at i:9009652 original size:33 final size:33
Alignment explanation
Indices: 9009615--9009677 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
9009605 ATAATTTATT
9009615 AGGTTATACTAAAATATCTAAAGATTTACTATA
1 AGGTTATACTAAAATATCTAAAGATTTACTATA
* *
9009648 AGGTTATACTAAAATATTTAAGGATTTACT
1 AGGTTATACTAAAATATCTAAAGATTTACT
9009678 TGAATTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (33 bp):
AGGTTATACTAAAATATCTAAAGATTTACTATA
Found at i:9009677 original size:20 final size:20
Alignment explanation
Indices: 9009654--9009692 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9009644 TATAAGGTTA
9009654 TACTAAAATATTTAAGGATT
1 TACTAAAATATTTAAGGATT
** *
9009674 TACTTGAATTTTTAAGGAT
1 TACTAAAATATTTAAGGAT
9009693 CTACCAAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (20 bp):
TACTAAAATATTTAAGGATT
Found at i:9009821 original size:21 final size:20
Alignment explanation
Indices: 9009789--9009848 Score: 84
Period size: 21 Copynumber: 3.0 Consensus size: 20
9009779 TTTTTAAGGA
9009789 TTTACCAAAATTTATAAGAT
1 TTTACCAAAATTTATAAGAT
*
9009809 TTTACCAAAAATTTATAAGGT
1 TTTACC-AAAATTTATAAGAT
* *
9009830 TATACCAAAATATATAAGA
1 TTTACCAAAATTTATAAGA
9009849 GTATCAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 17 0.49
21 18 0.51
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.35
Consensus pattern (20 bp):
TTTACCAAAATTTATAAGAT
Found at i:9009878 original size:20 final size:21
Alignment explanation
Indices: 9009853--9009905 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
9009843 ATAAGAGTAT
9009853 CAAAATTTCTAAAG-CCTTAC
1 CAAAATTTCTAAAGACCTTAC
* **
9009873 CAAAATCTC-AAAGAGTTTAC
1 CAAAATTTCTAAAGACCTTAC
9009893 CAAAATTTCTAAA
1 CAAAATTTCTAAA
9009906 AATTTCCTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 4 0.15
20 20 0.74
21 3 0.11
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.28
Consensus pattern (21 bp):
CAAAATTTCTAAAGACCTTAC
Found at i:9009973 original size:80 final size:80
Alignment explanation
Indices: 9009870--9010019 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
9009860 TCTAAAGCCT
* * * *
9009870 TACCAAAATCTCAAAGAGTTTACCAAAA-TTTCTAAAAATTTCCTTAGTGTCTCAATCTCGATCA
1 TACCAAAATCTCAAAGAGTTTACCAAAACTTT-TAAAAATTTCCTTAATGTCCCAAACTCGATAA
9009934 ACTTAACATCTTGACA
65 ACTTAACATCTTGACA
* *
9009950 TACCAAAAT-TGCTAAAGA-TTTACCAAAACTTTTAAAGATTTCCTTAATGTCCCAAACTTGATA
1 TACCAAAATCT-C-AAAGAGTTTACCAAAACTTTTAAAAATTTCCTTAATGTCCCAAACTCGATA
9010013 AACTTAA
64 AACTTAA
9010020 TATTTTGGCT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 1 0.02
80 52 0.85
81 8 0.13
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (80 bp):
TACCAAAATCTCAAAGAGTTTACCAAAACTTTTAAAAATTTCCTTAATGTCCCAAACTCGATAAA
CTTAACATCTTGACA
Found at i:9009975 original size:20 final size:20
Alignment explanation
Indices: 9009950--9009990 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
9009940 CATCTTGACA
9009950 TACCAAAA-TTGCTAAAGATT
1 TACCAAAACTT-CTAAAGATT
*
9009970 TACCAAAACTTTTAAAGATT
1 TACCAAAACTTCTAAAGATT
9009990 T
1 T
9009991 CCTTAATGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.44, C:0.15, G:0.07, T:0.34
Consensus pattern (20 bp):
TACCAAAACTTCTAAAGATT
Found at i:9010108 original size:20 final size:20
Alignment explanation
Indices: 9010059--9010187 Score: 74
Period size: 20 Copynumber: 6.5 Consensus size: 20
9010049 AAGATGTACC
*
9010059 AAAATTTCTAAGGTTTTAC-
1 AAAATTTCTAAGGATTTACA
* *
9010078 -TAATATCTAAGGATTTACA
1 AAAATTTCTAAGGATTTACA
9010097 AAAATTTCTAA-GATTATA-A
1 AAAATTTCTAAGGATT-TACA
* *
9010116 CAAAATATCTAAGTATTTATC-
1 -AAAATTTCTAAGGATTTA-CA
* * * *
9010137 AATATTTCAAAAGCA-TTACC
1 AAAATTTC-TAAGGATTTACA
9010157 AAAATTTCTAAGGATTTA-A
1 AAAATTTCTAAGGATTTACA
*
9010176 CAATATTTCTAA
1 -AAAATTTCTAA
9010188 AAGTTTACCG
Statistics
Matches: 83, Mismatches: 16, Indels: 21
0.69 0.13 0.17
Matches are distributed among these distances:
18 15 0.18
19 10 0.12
20 51 0.61
21 7 0.08
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (20 bp):
AAAATTTCTAAGGATTTACA
Found at i:9010194 original size:20 final size:21
Alignment explanation
Indices: 9010130--9010213 Score: 70
Period size: 20 Copynumber: 4.2 Consensus size: 21
9010120 ATATCTAAGT
*
9010130 ATTTATCAATATTTC-AAAAG
1 ATTTACCAATATTTCTAAAAG
* *
9010150 CA-TTACCAAAATTTCT-AAGG
1 -ATTTACCAATATTTCTAAAAG
*
9010170 ATTTAACAATATTTCTAAAAG
1 ATTTACCAATATTTCTAAAAG
* *
9010191 -TTTACCGATGTTTCT-AAAG
1 ATTTACCAATATTTCTAAAAG
9010210 ATTT
1 ATTT
9010214 TCCTAATGTC
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
19 5 0.10
20 41 0.82
21 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (21 bp):
ATTTACCAATATTTCTAAAAG
Found at i:9010196 original size:40 final size:40
Alignment explanation
Indices: 9010079--9010196 Score: 125
Period size: 40 Copynumber: 3.0 Consensus size: 40
9010069 AGGTTTTACT
* * *
9010079 AATATCTAAGGATTT-ACAAAAATTTCTAAGA-TTATAACAA
1 AATATCTAAGGATTTAAC-AATATTTCTAAAAGTT-TACCAA
* * *
9010119 AATATCTAAGTATTTATCAATATTTC-AAAAGCATTACCAA
1 AATATCTAAGGATTTAACAATATTTCTAAAAG-TTTACCAA
*
9010159 AATTTCTAAGGATTTAACAATATTTCTAAAAGTTTACC
1 AATATCTAAGGATTTAACAATATTTCTAAAAGTTTACC
9010197 GATGTTTCTA
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
39 3 0.05
40 54 0.84
41 7 0.11
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.36
Consensus pattern (40 bp):
AATATCTAAGGATTTAACAATATTTCTAAAAGTTTACCAA
Found at i:9010213 original size:40 final size:40
Alignment explanation
Indices: 9010116--9010213 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 40
9010106 AAGATTATAA
* *
9010116 CAAAATATCT-AAGTATTTATCAATATTTCAAAAGCATTAC
1 CAAAATTTCTAAAG-ATTTAACAATATTTCAAAAGCATTAC
* *
9010156 CAAAATTTCTAAGGATTTAACAATATTTCTAAAAG-TTTAC
1 CAAAATTTCTAAAGATTTAACAATATTTC-AAAAGCATTAC
* **
9010196 CGATGTTTCTAAAGATTT
1 CAAAATTTCTAAAGATTT
9010214 TCCTAATGTC
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 41 0.85
41 7 0.15
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (40 bp):
CAAAATTTCTAAAGATTTAACAATATTTCAAAAGCATTAC
Found at i:9010404 original size:40 final size:40
Alignment explanation
Indices: 9010344--9010477 Score: 146
Period size: 41 Copynumber: 3.3 Consensus size: 40
9010334 ACCAAAATGC
* * * * * *
9010344 CCTTAG-AATTTTTGGTAAATCCCTAGATATTTTGATTCAA
1 CCTTAGAAATTTTTTGAAAATCCTTATAAATTTTG-TTAAA
* *
9010384 CCTTAGAAATTTTTTG-AAATCATTATAAATTTTGGTAAA
1 CCTTAGAAATTTTTTGAAAATCCTTATAAATTTTGTTAAA
*
9010423 GCCTTAGAAATTTTTTGAAAATCCTTATAAATTTTGGTAAAA
1 -CCTTAGAAATTTTTTGAAAATCCTTATAAATTTT-GTTAAA
9010465 CCTTAGAAATTTT
1 CCTTAGAAATTTT
9010478 GGTAAACCTT
Statistics
Matches: 80, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
39 3 0.04
40 36 0.45
41 37 0.46
42 4 0.05
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (40 bp):
CCTTAGAAATTTTTTGAAAATCCTTATAAATTTTGTTAAA
Found at i:9010413 original size:20 final size:21
Alignment explanation
Indices: 9010384--9010457 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 21
9010374 TTTGATTCAA
*
9010384 CCTTAGAAATTTTTTG-AAAT
1 CCTTATAAATTTTTTGAAAAT
* * * *
9010404 CATTATAAA-TTTTGGTAAAG
1 CCTTATAAATTTTTTGAAAAT
*
9010424 CCTTAGAAATTTTTTGAAAAT
1 CCTTATAAATTTTTTGAAAAT
9010445 CCTTATAAATTTT
1 CCTTATAAATTTT
9010458 GGTAAAACCT
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
19 5 0.12
20 17 0.40
21 20 0.48
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (21 bp):
CCTTATAAATTTTTTGAAAAT
Found at i:9010451 original size:41 final size:40
Alignment explanation
Indices: 9010382--9010477 Score: 165
Period size: 41 Copynumber: 2.4 Consensus size: 40
9010372 ATTTTGATTC
9010382 AACCTTAGAAATTTTTTGAAATCATTATAAATTTTGGTAA
1 AACCTTAGAAATTTTTTGAAATCATTATAAATTTTGGTAA
* *
9010422 AGCCTTAGAAATTTTTTGAAAATCCTTATAAATTTTGGTAA
1 AACCTTAGAAATTTTTTG-AAATCATTATAAATTTTGGTAA
9010463 AACCTTAGAAATTTT
1 AACCTTAGAAATTTT
9010478 GGTAAACCTT
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 17 0.33
41 35 0.67
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (40 bp):
AACCTTAGAAATTTTTTGAAATCATTATAAATTTTGGTAA
Found at i:9010468 original size:20 final size:20
Alignment explanation
Indices: 9010406--9010491 Score: 97
Period size: 20 Copynumber: 4.3 Consensus size: 20
9010396 TTTGAAATCA
*
9010406 TTATAAATTTTGGTAAAGCC
1 TTATAAATTTTGGTAAAACC
* *
9010426 TTAGAAATTTT-TTGAAAATCC
1 TTATAAATTTTGGT-AAAA-CC
9010447 TTATAAATTTTGGTAAAACC
1 TTATAAATTTTGGTAAAACC
*
9010467 TTAGAAATTTTGGT-AAACC
1 TTATAAATTTTGGTAAAACC
9010486 TT-TAAA
1 TTATAAA
9010492 AATATCGGTA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
18 3 0.05
19 8 0.14
20 28 0.50
21 16 0.29
22 1 0.02
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (20 bp):
TTATAAATTTTGGTAAAACC
Found at i:9010494 original size:20 final size:19
Alignment explanation
Indices: 9010410--9010521 Score: 89
Period size: 20 Copynumber: 5.6 Consensus size: 19
9010400 AAATCATTAT
9010410 AAATTTTGGTAAAGCCTTAGA
1 AAATTTTGGTAAA-CCTTA-A
* * * *
9010431 AATTTTTTGAAAATCCTTAT
1 AAATTTTGGTAAA-CCTTAA
*
9010451 AAATTTTGGTAAAACCTTAG
1 AAATTTTGGT-AAACCTTAA
9010471 AAATTTTGGTAAACCTTTAA
1 AAATTTTGGTAAACC-TTAA
* * **
9010491 AAATATCGGTAAATATTTAA
1 AAATTTTGGTAAA-CCTTAA
9010511 AAATTTTGGTA
1 AAATTTTGGTA
9010522 TGCCAATATG
Statistics
Matches: 72, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
19 5 0.07
20 49 0.68
21 18 0.25
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (19 bp):
AAATTTTGGTAAACCTTAA
Found at i:9014946 original size:31 final size:32
Alignment explanation
Indices: 9014910--9014974 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
9014900 CTTAGATAAT
9014910 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
9014941 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
9014973 TT
1 TT
9014975 GTAATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:9015281 original size:3 final size:3
Alignment explanation
Indices: 9015273--9015298 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9015263 ATCTATCCTT
9015273 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
9015299 TAACTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9021155 original size:30 final size:31
Alignment explanation
Indices: 9021120--9021182 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
9021110 TTAGATAATT
9021120 TTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTAAAGAGTTTTTATTAGGATTCAATTACTC
9021150 TTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTAAAGAGTTTTTATTAGGATTCAATTACTC
9021181 TT
1 TT
9021183 GTAATTTGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.46
Consensus pattern (31 bp):
TTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:9026324 original size:20 final size:21
Alignment explanation
Indices: 9026282--9026324 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
9026272 TCATACCAAC
*
9026282 TAAAAAATTATTTAAAAATTA
1 TAAAAAATTATTTAAAAAATA
9026303 TAAAAAA-TA-TTAAAAACATA
1 TAAAAAATTATTTAAAAA-ATA
9026323 TA
1 TA
9026325 GTAAGTGGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 7 0.35
20 6 0.30
21 7 0.35
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
TAAAAAATTATTTAAAAAATA
Found at i:9026817 original size:15 final size:17
Alignment explanation
Indices: 9026797--9026829 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
9026787 TATTTGGATG
9026797 ATTAAATT-TT-TTATT
1 ATTAAATTATTGTTATT
9026812 ATTAAATTATTGTTATT
1 ATTAAATTATTGTTATT
9026829 A
1 A
9026830 AATATGCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
ATTAAATTATTGTTATT
Found at i:9026865 original size:22 final size:24
Alignment explanation
Indices: 9026813--9026866 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 24
9026803 TTTTTTATTA
9026813 TTAAATTATTGTTATTAAATATGCT
1 TTAAATTATTGTTATT-AATATGCT
*
9026838 TAAAATTATTG-TATT-ATAT-CTT
1 TTAAATTATTGTTATTAATATGC-T
9026860 TTAAATT
1 TTAAATT
9026867 GAATTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 1 0.04
22 11 0.42
24 4 0.15
25 10 0.38
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (24 bp):
TTAAATTATTGTTATTAATATGCT
Found at i:9029341 original size:29 final size:29
Alignment explanation
Indices: 9029299--9029358 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
9029289 TCGCTGATCT
9029299 CATTTGGTATATAATATAACATTCAATAA
1 CATTTGGTATATAATATAACATTCAATAA
*
9029328 CATTTGGTATATAATATAACATTTAATAA
1 CATTTGGTATATAATATAACATTCAATAA
9029357 CA
1 CA
9029359 GTATATTAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (29 bp):
CATTTGGTATATAATATAACATTCAATAA
Found at i:9032326 original size:43 final size:43
Alignment explanation
Indices: 9032279--9032401 Score: 165
Period size: 43 Copynumber: 2.8 Consensus size: 43
9032269 TATGATTTCA
* *
9032279 TGTAAGACCATGTCTGGGATATTGGCATCGATATGAGATTCCG
1 TGTAAGACCATGTCTGGGACATTGGCATAGATATGAGATTCCG
** * **
9032322 TGTAAGACCATGTCTGGGACATTGATATAAATATGAGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATAGATATGAGATTCCG
*
9032365 TGTAAGACCATGTCTGGGACATTGGCATTGTATATGA
1 TGTAAGACCATGTCTGGGACATTGGCATAG-ATATGA
9032402 TTATAACATG
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
43 62 0.91
44 6 0.09
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATAGATATGAGATTCCG
Found at i:9038610 original size:95 final size:94
Alignment explanation
Indices: 9038316--9038594 Score: 298
Period size: 95 Copynumber: 2.9 Consensus size: 94
9038306 GTTTGTCAAT
* * * * *
9038316 TAAATTAATTAT-AATTTTT-TAAAATTGGATTAGGTTTCGTGTTTATTGTTTTTTAA-GAAAAA
1 TAAATTAATTATAAATTTTTAAAAAATTAGATTAGGTTTAGTGTTTA-AGGTTTTTAATG-AAAA
*
9038378 ATCAATTAAATTAGGGTTTAGGGTTACTTGAG
64 ATCAAATAAATTAGGGTTTAGGGTTA-TTGAG
* ** * *
9038410 TAATTTAATTA-ATTTTTTTAAAAAAATTAGATTAGGGTTTAGAGTTAAAGGTTTTT-ATGAAAA
1 TAAATTAATTATAAATTTTT-AAAAAATTAGATTA-GGTTTAGTGTTTAAGGTTTTTAATGAAAA
* *
9038473 ATTAAATAAAATAGGGTTTAGGGTTACTTGAG
64 ATCAAATAAATTAGGGTTTAGGGTTA-TTGAG
* *
9038505 TAAATTAATTATAAATTTTTAAAAAATTAGATTAGGATTTAGTGTTTAGGGTTTTTAATTAAAAA
1 TAAATTAATTATAAATTTTTAAAAAATTAGATTAGG-TTTAGTGTTTAAGGTTTTTAATGAAAAA
* *
9038570 CTCAAATAAATTAAGGTTTGGGGTT
65 -TCAAATAAATTAGGGTTTAGGGTT
9038595 TAGGGTTACT
Statistics
Matches: 152, Mismatches: 24, Indels: 15
0.80 0.13 0.08
Matches are distributed among these distances:
94 17 0.11
95 74 0.49
96 31 0.20
97 30 0.20
ACGTcount: A:0.38, C:0.02, G:0.17, T:0.43
Consensus pattern (94 bp):
TAAATTAATTATAAATTTTTAAAAAATTAGATTAGGTTTAGTGTTTAAGGTTTTTAATGAAAAAT
CAAATAAATTAGGGTTTAGGGTTATTGAG
Found at i:9038859 original size:126 final size:126
Alignment explanation
Indices: 9038631--9039043 Score: 691
Period size: 126 Copynumber: 3.3 Consensus size: 126
9038621 TAATTTAAAT
* *
9038631 AAGCTCTCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
1 AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
*
9038696 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAAGATGCTTTGTCAGCAATAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAATAGTACTGAAAG
* * *
9038757 AAGCTCCCACGTGGATGCACTTTTGTTACAGTAGCTCCTGAAAAAATAATTTTGAGTAGACGTTT
1 AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
*
9038822 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAATAGCACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAATAGTACTGAAAG
* * *
9038883 AAGCTCCTACGTGGACGCACTTTTGTTACAGTAGCTCCTGAAAAAATAATTTCGAATAGACGTTT
1 AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
* * * *
9038948 ATGAGAAAATAGTGTCAAAAATGCTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAATAGTACTGAAAG
*
9039009 AAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGC
1 AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGC
9039044 GCATGTTTGG
Statistics
Matches: 268, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 268 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (126 bp):
AAGCTCCCACGTGGACGCACTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
CTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAATAGTACTGAAAG
Found at i:9042203 original size:21 final size:21
Alignment explanation
Indices: 9042179--9042239 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
9042169 TTGTCCAGCT
* *
9042179 TCCGGCAGGGGTTGTGGTTAC
1 TCCGGCAGGGATTCTGGTTAC
9042200 TCCGGCAGGGATTCTGGTT-C
1 TCCGGCAGGGATTCTGGTTAC
*
9042220 TTCCGGTAGAGGA-TCTGGTT
1 -TCCGGCAG-GGATTCTGGTT
9042240 GTTGGTGTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.89
22 3 0.09
ACGTcount: A:0.11, C:0.20, G:0.38, T:0.31
Consensus pattern (21 bp):
TCCGGCAGGGATTCTGGTTAC
Found at i:9042609 original size:30 final size:30
Alignment explanation
Indices: 9042584--9042657 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
9042574 TGCTGGGTTG
*
9042584 GGTGACTGTATTGGTGCTGTTGCTGGGCCT
1 GGTGACTGTATGGGTGCTGTTGCTGGGCCT
* * * *
9042614 GGTGATTGTATGGGTGCTGATGATGGGCCG
1 GGTGACTGTATGGGTGCTGTTGCTGGGCCT
* *
9042644 GGTGATTGTCTGGG
1 GGTGACTGTATGGG
9042658 CCTTGTTGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.09, C:0.12, G:0.45, T:0.34
Consensus pattern (30 bp):
GGTGACTGTATGGGTGCTGTTGCTGGGCCT
Found at i:9042668 original size:30 final size:30
Alignment explanation
Indices: 9042583--9042668 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 30
9042573 CTGCTGGGTT
* * * *
9042583 GGGTGACTGTATTGGTGCTGTTGCTGGGCC
1 GGGTGATTGTATGGGTCCTGTTGATGGGCC
* * *
9042613 TGGTGATTGTATGGGTGCTGATGATGGGCC
1 GGGTGATTGTATGGGTCCTGTTGATGGGCC
*
9042643 GGGTGATTGTCTGGG-CCTTGTTGATG
1 GGGTGATTGTATGGGTCC-TGTTGATG
9042669 AACTGTGTCG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
29 1 0.02
30 45 0.98
ACGTcount: A:0.09, C:0.13, G:0.43, T:0.35
Consensus pattern (30 bp):
GGGTGATTGTATGGGTCCTGTTGATGGGCC
Found at i:9043212 original size:29 final size:29
Alignment explanation
Indices: 9043179--9043237 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
9043169 TAATACATAA
9043179 TACTAAATACTAAATACCAATCGACTAGC
1 TACTAAATACTAAATACCAATCGACTAGC
9043208 TACTAAATACTAAATACCAATCGACTAGC
1 TACTAAATACTAAATACCAATCGACTAGC
9043237 T
1 T
9043238 CGTGAAGGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.24, G:0.07, T:0.25
Consensus pattern (29 bp):
TACTAAATACTAAATACCAATCGACTAGC
Found at i:9046245 original size:104 final size:104
Alignment explanation
Indices: 9046061--9046405 Score: 457
Period size: 104 Copynumber: 3.3 Consensus size: 104
9046051 GAAAAAAAAA
9046061 TTTTGAGTGCTGGCCTGTCAATGGCCGGCACACCTGTACAGGAAAAAAAATTCGAGTTTTGGTCT
1 TTTTGAGTGCTGGCCTGTCAATGGCCGGCAC-CCTGTACA-GAAAAAAAATTCGAGTTTTGGTCT
* *
9046126 GTCAATGGTCAGCACCAGAGTACGAAAAAAAG-AATTTTTT
64 GTCAATGGCCGGCACCAGAGTACGAAAAAAAGAAATTTTTT
* * * *
9046166 TTTTAAGTGCTGGCTTGTCAATGGCCGACACCCATGTACAGAAAAAAAATTCCAGTTTTGGTCTG
1 TTTTGAGTGCTGGCCTGTCAATGGCCGGCACCC-TGTACAGAAAAAAAATTCGAGTTTTGGTCTG
*
9046231 TCAATGGCCGGCACCAGAGTACAAAAAAAAGGAAAATTTTTT
65 TCAATGGCCGGCACCAGAGTACGAAAAAAA-G-AAATTTTTT
* * * * *
9046273 TTTTGGGTACTGGCCTGTCAATGGCCGGTATCCTGTACAGTAAAAAAATTCGAGTTTTGGTCTGT
1 TTTTGAGTGCTGGCCTGTCAATGGCCGGCACCCTGTACAGAAAAAAAATTCGAGTTTTGGTCTGT
*
9046338 CAATGGCCGGAACCAGAGTACG-AAAAAAGTAAA--TTTT
66 CAATGGCCGGCACCAGAGTACGAAAAAAAG-AAATTTTTT
* * *
9046375 TTTTG-GTGGTGGCCTGCCAATGGCTGGCACC
1 TTTTGAGTGCTGGCCTGTCAATGGCCGGCACC
9046406 ACCTTTTTTG
Statistics
Matches: 211, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
101 20 0.09
102 9 0.04
104 57 0.27
105 41 0.19
106 50 0.24
107 34 0.16
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (104 bp):
TTTTGAGTGCTGGCCTGTCAATGGCCGGCACCCTGTACAGAAAAAAAATTCGAGTTTTGGTCTGT
CAATGGCCGGCACCAGAGTACGAAAAAAAGAAATTTTTT
Found at i:9046571 original size:110 final size:113
Alignment explanation
Indices: 9046375--9046703 Score: 472
Period size: 110 Copynumber: 2.9 Consensus size: 113
9046365 AGTAAATTTT
* *
9046375 TTTTGGTGGTGGCCTGCCAATGGCTGGCACCACCTTTTTT---GGTAATTTTTTTTTTTACTTTT
1 TTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTTTTGGGGGAAATTTTTTTTTTTACTTTT
9046437 TTCGTGTCAATAGCAGGTATCAGTATACGAAAAAAG-AAAAAAAA-AA
66 TTCGTGTCAATAGCAGGTATCAGTATACGAAAAAAGAAAAAAAAACAA
* *
9046483 -TTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTTTTGGGGGAAATTATTTTTATTACTTTT
1 TTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTTTTGGGGGAAATTTTTTTTTTTACTTTT
9046547 TTCGTGTCAATAGCAGGTATCAGTATACGAAAAAAGTAAAAAAAAACAA
66 TTCGTGTCAATAGCAGGTATCAGTATACGAAAAAAG-AAAAAAAAACAA
*
9046596 TTTTTTTTGGTGGTGGCCTGCTAATGGCCGGCACCACCTTTTTTGGGGGAAATTTTGTTTTTTTT
1 ----TTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTTTTGGGGGAAA---T-TTTTTTTT
* *
9046661 TTACTTTTTTCGTGTCAATAGAAGGCATCAGTATACGAAAAAA
58 TTACTTTTTTCGTGTCAATAGCAGGTATCAGTATACGAAAAAA
9046704 CTCGAATTTT
Statistics
Matches: 197, Mismatches: 9, Indels: 16
0.89 0.04 0.07
Matches are distributed among these distances:
107 38 0.19
110 55 0.28
112 8 0.04
113 2 0.01
118 46 0.23
121 1 0.01
122 47 0.24
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (113 bp):
TTTTGGTGGTGGCCTGCCAATGGCCGGCACCACCTTTTTTGGGGGAAATTTTTTTTTTTACTTTT
TTCGTGTCAATAGCAGGTATCAGTATACGAAAAAAGAAAAAAAAACAA
Found at i:9053713 original size:21 final size:22
Alignment explanation
Indices: 9053683--9053733 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
9053673 GAATGATGAG
9053683 TAAGAACTCTT-AATAA-AAAAA
1 TAAGAACTCTTCAA-AATAAAAA
*
9053704 TAAGATCTCTTCAAAATAAAAA
1 TAAGAACTCTTCAAAATAAAAA
*
9053726 TAAAAACT
1 TAAGAACT
9053734 TTTTCTCTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.59, C:0.12, G:0.04, T:0.25
Consensus pattern (22 bp):
TAAGAACTCTTCAAAATAAAAA
Found at i:9057957 original size:35 final size:36
Alignment explanation
Indices: 9057911--9058033 Score: 135
Period size: 35 Copynumber: 3.5 Consensus size: 36
9057901 TCCGACACAA
* * *
9057911 CAATGCTCATAAGAGTTAATCCCTCT-AAAACATAG
1 CAATGCTCATAAAAGCTAATCCCTCTCAAAACATAC
* *
9057946 CAATGCTCATAAAAGCTAATTCCT-TCGAAACATAC
1 CAATGCTCATAAAAGCTAATCCCTCTCAAAACATAC
* * *
9057981 CAATGCTCATAAAAGCTAATCCCTC-CGAAATACAC
1 CAATGCTCATAAAAGCTAATCCCTCTCAAAACATAC
* *
9058016 CAATACTCATAAGAGCTA
1 CAATGCTCATAAAAGCTA
9058034 GTCCACCCTA
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
34 1 0.01
35 75 0.99
ACGTcount: A:0.41, C:0.26, G:0.10, T:0.24
Consensus pattern (36 bp):
CAATGCTCATAAAAGCTAATCCCTCTCAAAACATAC
Found at i:9065495 original size:35 final size:35
Alignment explanation
Indices: 9065328--9065488 Score: 177
Period size: 35 Copynumber: 4.7 Consensus size: 35
9065318 AATCCAACCA
* * * *
9065328 AAACACACCAGATGCTTACAAGAGCCAATCCGTCC-
1 AAACACACCA-ATGCTCATAAGAGCTAATCCCTCCT
* * *
9065363 -GACACACC-ATGCTGATAAGAGTTAATCCCT-CT
1 AAACACACCAATGCTCATAAGAGCTAATCCCTCCT
*
9065395 AAAACACACCAATGCTGATAAGAGCTAATCCCTCCT
1 -AAACACACCAATGCTCATAAGAGCTAATCCCTCCT
* *
9065431 GAACACACCAATGCTCATAAGAGCTAGTCCCTCCT
1 AAACACACCAATGCTCATAAGAGCTAATCCCTCCT
*
9065466 AAACACACCAATACTCATAAGAG
1 AAACACACCAATGCTCATAAGAG
9065489 TTAGTCCAAT
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
31 1 0.01
32 17 0.16
34 14 0.13
35 74 0.69
36 2 0.02
ACGTcount: A:0.37, C:0.31, G:0.13, T:0.19
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCTAATCCCTCCT
Found at i:9066458 original size:12 final size:12
Alignment explanation
Indices: 9066441--9066465 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9066431 ATCAAACCAA
9066441 TTTTCTTTAAAT
1 TTTTCTTTAAAT
9066453 TTTTCTTTAAAT
1 TTTTCTTTAAAT
9066465 T
1 T
9066466 CTTTATTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTTCTTTAAAT
Found at i:9077389 original size:14 final size:14
Alignment explanation
Indices: 9077362--9077397 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
9077352 ACCCAAATGG
9077362 GAAAAAAAGCAAAA
1 GAAAAAAAGCAAAA
9077376 GAGAAAAAAG-AAAA
1 GA-AAAAAAGCAAAA
9077390 GAAAAAAA
1 GAAAAAAA
9077398 TAGTCCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.29
14 8 0.38
15 7 0.33
ACGTcount: A:0.81, C:0.03, G:0.17, T:0.00
Consensus pattern (14 bp):
GAAAAAAAGCAAAA
Found at i:9077709 original size:6 final size:6
Alignment explanation
Indices: 9077700--9077732 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
9077690 ATGTTGGAGT
9077700 AGGTGA AGGTGA AGGTGA AGGTGA AGGTGA AGG
1 AGGTGA AGGTGA AGGTGA AGGTGA AGGTGA AGG
9077733 CGTGATTCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.52, T:0.15
Consensus pattern (6 bp):
AGGTGA
Found at i:9084228 original size:22 final size:23
Alignment explanation
Indices: 9084202--9084552 Score: 83
Period size: 22 Copynumber: 15.0 Consensus size: 23
9084192 ATTTTCACAC
*
9084202 CAAAATTTGGGCAGCATATATA-
1 CAAAATTTGGGCAGCATATACAT
* *
9084224 CAAAATTTGGACTGCATTTATACAT
1 CAAAATTTGGGCAGCA--TATACAT
9084249 CAAAATTT-GGCAGCATATACAT
1 CAAAATTTGGGCAGCATATACAT
* *
9084271 -ATATAA-TTGGACTGCATTTATACAT
1 CA-A-AATTTGGGCAGCA--TATACAT
* *
9084296 CAAAATTT-GACAACATATACAT
1 CAAAATTTGGGCAGCATATACAT
* * * *
9084318 -AAATAATTGGACTGCATTTGTACAT
1 CAAA-ATTTGGGCAGCA--TATACAT
**
9084343 CAAAATTT-GAAAGCATATACAT
1 CAAAATTTGGGCAGCATATACAT
* * *
9084365 -ATATAA-TTGGACTGCATTTGAACAT
1 CA-A-AATTTGGGCAGCATAT--ACAT
* *
9084390 CAAAATGT-GACAGCATATACAT
1 CAAAATTTGGGCAGCATATACAT
* * *
9084412 -ATATAA-TTGGACTGCATTTGTACAT
1 CA-A-AATTTGGGCAGCA--TATACAT
*
9084437 CAAAATTT-GACAGCATATACAT
1 CAAAATTTGGGCAGCATATACAT
* *
9084459 -ATATAA-TTGGACTGCATTTATACAT
1 CA-A-AATTTGGGCAGCA--TATACAT
*
9084484 CAAAATTT-GACAGCATATACAT
1 CAAAATTTGGGCAGCATATACAT
* * *
9084506 -ATATAA-TTGGACTGCATTTGTACAT
1 CA-A-AATTTGGGCAGCA--TATACAT
*
9084531 CAAAATTT-GACAGCATATACAT
1 CAAAATTTGGGCAGCATATACAT
9084553 ATATAATTGG
Statistics
Matches: 252, Mismatches: 34, Indels: 86
0.68 0.09 0.23
Matches are distributed among these distances:
21 8 0.03
22 74 0.29
23 45 0.18
24 56 0.22
25 61 0.24
26 8 0.03
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (23 bp):
CAAAATTTGGGCAGCATATACAT
Found at i:9084597 original size:47 final size:47
Alignment explanation
Indices: 9084230--9084599 Score: 625
Period size: 47 Copynumber: 7.9 Consensus size: 47
9084220 TATACAAAAT
*
9084230 TTGGACTGCATTTATACATCAAAATTTGGCAGCATATACATATATAA
1 TTGGACTGCATTTATACATCAAAATTTGACAGCATATACATATATAA
* *
9084277 TTGGACTGCATTTATACATCAAAATTTGACAACATATACATAAATAA
1 TTGGACTGCATTTATACATCAAAATTTGACAGCATATACATATATAA
* *
9084324 TTGGACTGCATTTGTACATCAAAATTTGAAAGCATATACATATATAA
1 TTGGACTGCATTTATACATCAAAATTTGACAGCATATACATATATAA
*
9084371 TTGGACTGCATTTGA-ACATCAAAATGTGACAGCATATACATATATAA
1 TTGGACTGCATTT-ATACATCAAAATTTGACAGCATATACATATATAA
*
9084418 TTGGACTGCATTTGTACATCAAAATTTGACAGCATATACATATATAA
1 TTGGACTGCATTTATACATCAAAATTTGACAGCATATACATATATAA
9084465 TTGGACTGCATTTATACATCAAAATTTGACAGCATATACATATATAA
1 TTGGACTGCATTTATACATCAAAATTTGACAGCATATACATATATAA
*
9084512 TTGGACTGCATTTGTACATCAAAATTTGACAGCATATACATATATAA
1 TTGGACTGCATTTATACATCAAAATTTGACAGCATATACATATATAA
* **
9084559 TTGGACTACATTTATTTATCAAAATTTGACAGCATATACAT
1 TTGGACTGCATTTATACATCAAAATTTGACAGCATATACAT
9084600 TCATTTACTC
Statistics
Matches: 303, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 303 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.34
Consensus pattern (47 bp):
TTGGACTGCATTTATACATCAAAATTTGACAGCATATACATATATAA
Found at i:9084875 original size:14 final size:15
Alignment explanation
Indices: 9084851--9084885 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
9084841 TATATACATT
9084851 ACCATATAAATACTA
1 ACCATATAAATACTA
9084866 ACCATA-AAATACTA
1 ACCATATAAATACTA
9084880 ATCCAT
1 A-CCAT
9084886 GATTAAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:9091149 original size:34 final size:34
Alignment explanation
Indices: 9091110--9091178 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
9091100 CGAAAGTCAG
9091110 TGGTGTCAGAAAATACGATTTTGGGATCTCATTT
1 TGGTGTCAGAAAATACGATTTTGGGATCTCATTT
* *
9091144 TGGTGTCAGAAAATACGGTTTTGGGATCTCGTTT
1 TGGTGTCAGAAAATACGATTTTGGGATCTCATTT
9091178 T
1 T
9091179 CATAAATCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.23, C:0.12, G:0.26, T:0.39
Consensus pattern (34 bp):
TGGTGTCAGAAAATACGATTTTGGGATCTCATTT
Found at i:9092658 original size:111 final size:110
Alignment explanation
Indices: 9092486--9092776 Score: 352
Period size: 111 Copynumber: 2.6 Consensus size: 110
9092476 GGGAAATTTA
* * * *
9092486 GGATGGTAGGTCATCGTTTCTGAGCAA-CTCAAGATGACATATTCATTGAACTGTGAAAACCATC
1 GGATGGTAGGTCATCGTTTCAG-GCAACCT-GAGATGACAGATTCGTTGAACTGTGAAAACCATC
* * *
9092550 ATTGTTGGACAATCCGAA-GTGGTAAACCATCGTTCTTGGGTAATCTG
64 ATTGTTGGACAATCC-AATGTGGTAAACCATCATTCTTGGGCAATCCG
* * * *
9092597 GGATGGTAGGTCATCGTTGTCAGGAAACCTGAGATGACAGATTTGTTGAATTGTGACAACCATCA
1 GGATGGTAGGTCATCGTT-TCAGGCAACCTGAGATGACAGATTCGTTGAACTGTGAAAACCATCA
* * *
9092662 TCGTTGGGCAATCCAATGTGGTAAACCATCATTTTTGGGCAATCCG
65 TTGTTGGACAATCCAATGTGGTAAACCATCATTCTTGGGCAATCCG
* * * * *
9092708 GGATGGTAGGTCATCGTTTTCAAGCAACCTGGGATGATAGATTCGTTGAACTATGAAAATCATCA
1 GGATGGTAGGTCATCG-TTTCAGGCAACCTGAGATGACAGATTCGTTGAACTGTGAAAACCATCA
9092773 TTGT
65 TTGT
9092777 CAGGCAATTC
Statistics
Matches: 152, Mismatches: 24, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
110 2 0.01
111 143 0.94
112 7 0.05
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (110 bp):
GGATGGTAGGTCATCGTTTCAGGCAACCTGAGATGACAGATTCGTTGAACTGTGAAAACCATCAT
TGTTGGACAATCCAATGTGGTAAACCATCATTCTTGGGCAATCCG
Found at i:9097885 original size:23 final size:23
Alignment explanation
Indices: 9097858--9097901 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
9097848 GCATAATATC
*
9097858 CAAATAATATTAAAAATGACACT
1 CAAATAAGATTAAAAATGACACT
9097881 CAAATAAGATTAAAAATGACA
1 CAAATAAGATTAAAAATGACA
9097902 GTGAAACAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.23
Consensus pattern (23 bp):
CAAATAAGATTAAAAATGACACT
Found at i:9097953 original size:23 final size:23
Alignment explanation
Indices: 9097927--9097981 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
9097917 AAATTGTTGC
9097927 AAAACAACA-ATAAAATAGCACAA
1 AAAACAACACA-AAAATAGCACAA
* *
9097950 AAAACAACACCAAAAATAGTACCA
1 AAAACAACA-CAAAAATAGCACAA
9097974 AAAACAAC
1 AAAACAAC
9097982 CTGCAAAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 9 0.32
24 18 0.64
25 1 0.04
ACGTcount: A:0.67, C:0.22, G:0.04, T:0.07
Consensus pattern (23 bp):
AAAACAACACAAAAATAGCACAA
Found at i:9110220 original size:16 final size:16
Alignment explanation
Indices: 9110199--9110230 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
9110189 GGATTATTTC
9110199 CTCATGGAATATGTAA
1 CTCATGGAATATGTAA
9110215 CTCATGGAATATGTAA
1 CTCATGGAATATGTAA
9110231 ACATCATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (16 bp):
CTCATGGAATATGTAA
Found at i:9116890 original size:12 final size:12
Alignment explanation
Indices: 9116875--9116907 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9116865 ATTAAAAGTT
*
9116875 AAAGTAAATATA
1 AAAGTAAAAATA
9116887 AAAGTAAAAATA
1 AAAGTAAAAATA
9116899 AAAG-AAAAA
1 AAAGTAAAAA
9116908 GATGACAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (12 bp):
AAAGTAAAAATA
Found at i:9118055 original size:75 final size:75
Alignment explanation
Indices: 9117970--9118115 Score: 249
Period size: 75 Copynumber: 1.9 Consensus size: 75
9117960 GGAAAACCAA
* *
9117970 GATTATTCCCTTATTAATAGAGAAGGCAAATAGAAAGTTA-GAAAAATGAATTATATTCTTTCCA
1 GATTATTCCCTTATTAATAGAGAAGGCAAATAGAAAGTTACAAAAAACG-ATTATATTCTTTCCA
9118034 AAAGAATGTAG
65 AAAGAATGTAG
*
9118045 GATTATTCCCTTATTAATAGAGAAGGCAAATGGAAAGTTACAAAAAACGATTATATTCTTTCCAA
1 GATTATTCCCTTATTAATAGAGAAGGCAAATAGAAAGTTACAAAAAACGATTATATTCTTTCCAA
9118110 AAGAAT
66 AAGAAT
9118116 ATTAATTTCC
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
75 61 0.91
76 6 0.09
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (75 bp):
GATTATTCCCTTATTAATAGAGAAGGCAAATAGAAAGTTACAAAAAACGATTATATTCTTTCCAA
AAGAATGTAG
Found at i:9118240 original size:37 final size:37
Alignment explanation
Indices: 9118198--9118272 Score: 125
Period size: 37 Copynumber: 2.0 Consensus size: 37
9118188 AATATATACA
*
9118198 ATTAATATTTTGTATGTAC-CAAATTCATATATTAATT
1 ATTAATAATTTGTATG-ACTCAAATTCATATATTAATT
9118235 ATTAATAATTTGTATGACTCAAATTCATATATTAATT
1 ATTAATAATTTGTATGACTCAAATTCATATATTAATT
9118272 A
1 A
9118273 AATCCATTCC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 2 0.06
37 34 0.94
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (37 bp):
ATTAATAATTTGTATGACTCAAATTCATATATTAATT
Found at i:9123299 original size:22 final size:21
Alignment explanation
Indices: 9123264--9123308 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
9123254 AAGTTTAAAT
* *
9123264 TTTAAATTTGGTAAATAAAAAA
1 TTTAAAGTTAGTAAA-AAAAAA
*
9123286 TTTAAAGTTAGTAAAAAATAA
1 TTTAAAGTTAGTAAAAAAAAA
9123307 TT
1 TT
9123309 GTATCTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (21 bp):
TTTAAAGTTAGTAAAAAAAAA
Found at i:9132055 original size:37 final size:36
Alignment explanation
Indices: 9131967--9132056 Score: 110
Period size: 37 Copynumber: 2.4 Consensus size: 36
9131957 AATACACAAG
*
9131967 TAATCCAACTGA-AACATGTCAATCGCTCATAAGAGC
1 TAATCCAACT-ATAACATGTCAAACGCTCATAAGAGC
* * *
9132003 TAATCCATTCGATAACATGTCAAACGTTCATAAGAGC
1 TAATCCA-ACTATAACATGTCAAACGCTCATAAGAGC
9132040 TAATCCAACCTATAACA
1 TAATCCAA-CTATAACA
9132057 CGCTAGATCA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
36 8 0.18
37 37 0.82
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.24
Consensus pattern (36 bp):
TAATCCAACTATAACATGTCAAACGCTCATAAGAGC
Done.