Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 33 of 211
Found at i:9663485 original size:50 final size:50
Alignment explanation
Indices: 9663230--9663490 Score: 166
Period size: 50 Copynumber: 5.2 Consensus size: 50
9663220 GTAGTGGAAT
* * * *
9663230 AGATTGAAGCTACGACGTCGAATCTAGTTTCCCCAACGTTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
* * *** *** * * * ** *
9663280 AGATTGAAG-TCACAACGGCAAATTTTACTTCCCTGGCAGTGTAGTGGAAC
1 AGATTGAAGCT-ACAACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
* *
9663330 AGATTAAAGCTACAACGGTGAATCTCGTTTCCCCAACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
* * *** *** ** * * ** *
9663380 AGATTGAAGCCGTA-AACGGTGAATTTTACTTCCCTGGCGGTGTAGTGGAAC
1 AGATTGAAG-C-TACAACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
9663431 AGATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
1 AGATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
9663481 AGATTGAAGC
1 AGATTGAAGC
9663491 CGCAAACGAT
Statistics
Matches: 143, Mismatches: 63, Indels: 10
0.66 0.29 0.05
Matches are distributed among these distances:
49 3 0.02
50 104 0.73
51 34 0.24
52 2 0.01
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCTACAACGGCGAATCTCGTTTCCCCAACATTGCAATTAAAA
Found at i:9664144 original size:19 final size:19
Alignment explanation
Indices: 9664119--9664191 Score: 128
Period size: 19 Copynumber: 3.8 Consensus size: 19
9664109 AATCTTCAAG
9664119 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9664138 TATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
9664157 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9664176 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
9664192 AGATATGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 50 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9664217 original size:22 final size:22
Alignment explanation
Indices: 9664170--9664214 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
9664160 ATGTAATCTT
*
9664170 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
9664192 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
9664215 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:9666425 original size:41 final size:41
Alignment explanation
Indices: 9666379--9666481 Score: 170
Period size: 41 Copynumber: 2.5 Consensus size: 41
9666369 TTTAGAATAT
*
9666379 CGGCATTAAGCCTGCTAGACATAAAGTCTGAAATATTTCGC
1 CGGCATTAAGCCTGCTAGACATAAAGTCTGAAATATTTCAC
* *
9666420 TGGCATTAAGCCTGCTAGACGTAAAGTCTGAAATATTTCAC
1 CGGCATTAAGCCTGCTAGACATAAAGTCTGAAATATTTCAC
*
9666461 CAGCATTAAGCCTGCTAGACA
1 CGGCATTAAGCCTGCTAGACA
9666482 CAGAGCCTGA
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.26
Consensus pattern (41 bp):
CGGCATTAAGCCTGCTAGACATAAAGTCTGAAATATTTCAC
Found at i:9666707 original size:63 final size:63
Alignment explanation
Indices: 9666602--9666745 Score: 172
Period size: 63 Copynumber: 2.3 Consensus size: 63
9666592 CTTCATAGTA
* *
9666602 AACACATATTCGAA-C-CATATATGTATAATTCACAACATTAAA-TACAGCTCAAGGAATTTG
1 AACATATATTCGAACCACATATATGTATAATTCACAACATTAAATTACAGCTCAAAGAATTTG
* * *
9666662 TAACCTATATTCGAACCACATATATGTATAAGATTCA-TACA-TAAATTTCAGCTCAAAGAATTT
1 -AACATATATTCGAACCACATATATGTAT-A-ATTCACAACATTAAATTACAGCTCAAAGAATTT
9666725 G
63 G
*
9666726 AACATACATTCGAACCACAT
1 AACATATATTCGAACCACAT
9666746 GTGAATAAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
61 12 0.17
62 1 0.01
63 33 0.46
64 20 0.28
65 5 0.07
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (63 bp):
AACATATATTCGAACCACATATATGTATAATTCACAACATTAAATTACAGCTCAAAGAATTTG
Found at i:9686250 original size:16 final size:17
Alignment explanation
Indices: 9686219--9686251 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
9686209 CCAAAGCTAA
*
9686219 AGTTTCTTATCTGTACC
1 AGTTTCTTAACTGTACC
9686236 AGTTT-TTAACTGTACC
1 AGTTTCTTAACTGTACC
9686252 TTCAAAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.21, C:0.21, G:0.12, T:0.45
Consensus pattern (17 bp):
AGTTTCTTAACTGTACC
Found at i:9687332 original size:40 final size:40
Alignment explanation
Indices: 9687275--9687358 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
9687265 GAGGGTACTA
* * *
9687275 TGGGTAGTCACCCTTAGGAGTCATGCCGTGAATGATTTTG
1 TGGGTAGTCACCCTTAGGAGCCACGCCATGAATGATTTTG
* * * *
9687315 TGGGTGGTCACCTTTAGGAGCCACGCCATGGATGGTTTTG
1 TGGGTAGTCACCCTTAGGAGCCACGCCATGAATGATTTTG
9687355 TGGG
1 TGGG
9687359 AAGGTACCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.17, C:0.18, G:0.35, T:0.31
Consensus pattern (40 bp):
TGGGTAGTCACCCTTAGGAGCCACGCCATGAATGATTTTG
Found at i:9687481 original size:24 final size:25
Alignment explanation
Indices: 9687434--9687487 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
9687424 GTACTTGTGT
* *
9687434 ATGGTTCCACAGGAGGGTACCATGG
1 ATGGTTCCACAGGAGAGTAACATGG
*
9687459 ATGGTTCCA-TGGAGAGTAACATGG
1 ATGGTTCCACAGGAGAGTAACATGG
*
9687483 GTGGT
1 ATGGT
9687488 ACTCGTGAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 16 0.64
25 9 0.36
ACGTcount: A:0.24, C:0.15, G:0.37, T:0.24
Consensus pattern (25 bp):
ATGGTTCCACAGGAGAGTAACATGG
Found at i:9687695 original size:25 final size:24
Alignment explanation
Indices: 9687620--9687695 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 24
9687610 CATTAAATAG
*
9687620 TCGTGGATGGTTTTGTGAAAAGGTA
1 TCGTGGATGG-TTTGTGGAAAGGTA
* * * *
9687645 CCATGGATGGTATTCGTGGGAGGGTA
1 TCGTGGATGGT-TT-GTGGAAAGGTA
9687671 TCGTGGATGGTTCTGTGGAAAGGTA
1 TCGTGGATGGTT-TGTGGAAAGGTA
9687696 CTGATGATGG
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
24 1 0.03
25 20 0.51
26 18 0.46
ACGTcount: A:0.21, C:0.08, G:0.39, T:0.32
Consensus pattern (24 bp):
TCGTGGATGGTTTGTGGAAAGGTA
Found at i:9687696 original size:51 final size:50
Alignment explanation
Indices: 9687620--9687732 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 50
9687610 CATTAAATAG
* *
9687620 TCGTGGATGGTTTTGTGAAAAGGTAC-CATGGATGGTATTCGTGGGAGGGTA
1 TCGTGGATGGTTCTGTGAAAAGGTACTCAT-GATGGT-TCCGTGGGAGGGTA
* * *
9687671 TCGTGGATGGTTCTGTGGAAAGGTACTGATGATGGTTCCGTGGGAGGGTG
1 TCGTGGATGGTTCTGTGAAAAGGTACTCATGATGGTTCCGTGGGAGGGTA
*
9687721 TCATGGATGGTT
1 TCGTGGATGGTT
9687733 ACCATTAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
50 23 0.42
51 30 0.55
52 2 0.04
ACGTcount: A:0.19, C:0.09, G:0.41, T:0.32
Consensus pattern (50 bp):
TCGTGGATGGTTCTGTGAAAAGGTACTCATGATGGTTCCGTGGGAGGGTA
Found at i:9687729 original size:25 final size:25
Alignment explanation
Indices: 9687641--9687732 Score: 87
Period size: 25 Copynumber: 3.6 Consensus size: 25
9687631 TTTGTGAAAA
* *
9687641 GGTACCATGGATGGTATTCGTGGGAG
1 GGTATCATGGATGGT-TCCGTGGGAG
* * * *
9687667 GGTATCGTGGATGGTTCTGTGGAAA
1 GGTATCATGGATGGTTCCGTGGGAG
*
9687692 GGTACTGAT-GATGGTTCCGTGGGAG
1 GGTA-TCATGGATGGTTCCGTGGGAG
*
9687717 GGTGTCATGGATGGTT
1 GGTATCATGGATGGTT
9687733 ACCATTAAAA
Statistics
Matches: 51, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
24 3 0.06
25 33 0.65
26 15 0.29
ACGTcount: A:0.17, C:0.10, G:0.42, T:0.30
Consensus pattern (25 bp):
GGTATCATGGATGGTTCCGTGGGAG
Found at i:9688864 original size:33 final size:33
Alignment explanation
Indices: 9688817--9688881 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
9688807 TGCAAATAAG
*
9688817 GGGTGGTAAGTTATAGAGAACCTACCCAAAAAC
1 GGGTGGTAAATTATAGAGAACCTACCCAAAAAC
*
9688850 GGGTGGTAAATTATAGGGAACCTACCCAAAAA
1 GGGTGGTAAATTATAGAGAACCTACCCAAAAA
9688882 AATGGTGCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.17, G:0.25, T:0.18
Consensus pattern (33 bp):
GGGTGGTAAATTATAGAGAACCTACCCAAAAAC
Found at i:9689215 original size:36 final size:36
Alignment explanation
Indices: 9689118--9689215 Score: 133
Period size: 36 Copynumber: 2.7 Consensus size: 36
9689108 AGCTGTGCAA
* *
9689118 AAACCATTCATTGATGATATAAAATACAAGAAGTGT
1 AAACCATTTATTGATGATATAAAATGCAAGAAGTGT
* * * * *
9689154 AGACCATCTGTTGACGATATAAAATGGAAGAAGTGT
1 AAACCATTTATTGATGATATAAAATGCAAGAAGTGT
9689190 AAACCATTTATTGATGATATAAAATG
1 AAACCATTTATTGATGATATAAAATG
9689216 TAAGCAATGC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 51 1.00
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (36 bp):
AAACCATTTATTGATGATATAAAATGCAAGAAGTGT
Found at i:9689480 original size:29 final size:29
Alignment explanation
Indices: 9689437--9689493 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
9689427 AGGGTGTGGT
* * *
9689437 GACTCGAACAGGTTGTTGACGAGTATGGC
1 GACTCGAACAAGTTGTTAACAAGTATGGC
*
9689466 GACTTGAACAAGTTGTTAACAAGTATGG
1 GACTCGAACAAGTTGTTAACAAGTATGG
9689494 TGACCCGAGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (29 bp):
GACTCGAACAAGTTGTTAACAAGTATGGC
Found at i:9692327 original size:24 final size:25
Alignment explanation
Indices: 9692268--9692327 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
9692258 CGATACTCAG
*
9692268 CTCGTATGAGCTTACTGTTGTTCAA
1 CTCGTATGAGCTTACCGTTGTTCAA
* *
9692293 CTCGGAGGAGCTTACCGTT-TATC-A
1 CTCGTATGAGCTTACCGTTGT-TCAA
9692317 CTCGTATGAGC
1 CTCGTATGAGC
9692328 ATACATGTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
24 11 0.38
25 18 0.62
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.33
Consensus pattern (25 bp):
CTCGTATGAGCTTACCGTTGTTCAA
Found at i:9696752 original size:28 final size:28
Alignment explanation
Indices: 9696721--9696780 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
9696711 TATGATGTAA
9696721 AAGGAAATCATTATATTAAATGATAATT
1 AAGGAAATCATTATATTAAATGATAATT
*
9696749 AAGGAAATTATTATATTAAATGATAATT
1 AAGGAAATCATTATATTAAATGATAATT
9696777 AAGG
1 AAGG
9696781 GTATTTAAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.50, C:0.02, G:0.13, T:0.35
Consensus pattern (28 bp):
AAGGAAATCATTATATTAAATGATAATT
Found at i:9698479 original size:67 final size:67
Alignment explanation
Indices: 9698383--9698520 Score: 276
Period size: 67 Copynumber: 2.1 Consensus size: 67
9698373 ATGCAAGTTC
9698383 AAATGATGTTTCTATTGGTTATTTGAGAAAGAAATTTAACCCTCGAGGGGGTTTAGTCCAAAATG
1 AAATGATGTTTCTATTGGTTATTTGAGAAAGAAATTTAACCCTCGAGGGGGTTTAGTCCAAAATG
9698448 GT
66 GT
9698450 AAATGATGTTTCTATTGGTTATTTGAGAAAGAAATTTAACCCTCGAGGGGGTTTAGTCCAAAATG
1 AAATGATGTTTCTATTGGTTATTTGAGAAAGAAATTTAACCCTCGAGGGGGTTTAGTCCAAAATG
9698515 GT
66 GT
9698517 AAAT
1 AAAT
9698521 ATCTTCATAT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 71 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.34
Consensus pattern (67 bp):
AAATGATGTTTCTATTGGTTATTTGAGAAAGAAATTTAACCCTCGAGGGGGTTTAGTCCAAAATG
GT
Found at i:9700004 original size:17 final size:17
Alignment explanation
Indices: 9699984--9700081 Score: 61
Period size: 17 Copynumber: 5.4 Consensus size: 17
9699974 ATTTCAAGAC
9699984 TTATGTAATGTTTTTAA
1 TTATGTAATGTTTTTAA
* ***
9700001 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
*
9700020 CTTATGTAATATTTTTAA
1 -TTATGTAATGTTTTTAA
* ***
9700038 TTATGTAGTGATTCAAAGA
1 TTATGTAATG-TTTTTA-A
9700057 TTTATGTAATGTTTTTAA
1 -TTATGTAATGTTTTTAA
9700075 TTATGTA
1 TTATGTA
9700082 GTGATTCAAT
Statistics
Matches: 57, Mismatches: 18, Indels: 12
0.66 0.21 0.14
Matches are distributed among these distances:
17 24 0.42
18 8 0.14
19 8 0.14
20 17 0.30
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.50
Consensus pattern (17 bp):
TTATGTAATGTTTTTAA
Found at i:9700020 original size:37 final size:37
Alignment explanation
Indices: 9699979--9700090 Score: 206
Period size: 37 Copynumber: 3.0 Consensus size: 37
9699969 TGTTAATTTC
9699979 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
9700016 AAGACTTATGTAATATTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
9700053 AAGATTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
9700090 A
1 A
9700091 TTTGAGTAAT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 72 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.46
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:9700026 original size:20 final size:19
Alignment explanation
Indices: 9700000--9700090 Score: 64
Period size: 17 Copynumber: 4.9 Consensus size: 19
9699990 AATGTTTTTA
9700000 ATTATGTAGTGATTCAAAG
1 ATTATGTAGTGATTCAAAG
* ***
9700019 ACTTATGTAAT-ATTTTTA-
1 A-TTATGTAGTGATTCAAAG
9700037 ATTATGTAGTGATTCAAAG
1 ATTATGTAGTGATTCAAAG
* ***
9700056 ATTTATGTAATG-TTTTTA-
1 A-TTATGTAGTGATTCAAAG
9700074 ATTATGTAGTGATTCAA
1 ATTATGTAGTGATTCAA
9700091 TTTGAGTAAT
Statistics
Matches: 51, Mismatches: 16, Indels: 11
0.65 0.21 0.14
Matches are distributed among these distances:
17 17 0.33
18 8 0.16
19 9 0.18
20 17 0.33
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.46
Consensus pattern (19 bp):
ATTATGTAGTGATTCAAAG
Found at i:9700231 original size:28 final size:28
Alignment explanation
Indices: 9700173--9700231 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
9700163 TAATTAACCG
*** *
9700173 AAAAAATTTTGATTCGGTTAATTTTTTA
1 AAAAAATTTTGATTCGGTTAACGGTTAA
* *
9700201 AAAAAATTTTGGTTTGGTTAACGGTTAA
1 AAAAAATTTTGATTCGGTTAACGGTTAA
9700229 AAA
1 AAA
9700232 TTTTGAAAGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.39, C:0.03, G:0.15, T:0.42
Consensus pattern (28 bp):
AAAAAATTTTGATTCGGTTAACGGTTAA
Found at i:9704365 original size:24 final size:25
Alignment explanation
Indices: 9704278--9704365 Score: 81
Period size: 25 Copynumber: 3.6 Consensus size: 25
9704268 TTACTGATTC
* * * **
9704278 CAGCTCTTATGAGCTTATCGATACT
1 CAGCTCGTATGAGCTTACCGTTGTT
*
9704303 CAGCTCATATGAGCTTACCGTTGTT
1 CAGCTCGTATGAGCTTACCGTTGTT
* *
9704328 CAGCTCGGAGGAGCTTACCGTT-TAT
1 CAGCTCGTATGAGCTTACCGTTGT-T
9704353 C-GCTCGTATGAGC
1 CAGCTCGTATGAGC
9704366 ATACATGTAC
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
24 11 0.21
25 41 0.79
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGTTGTT
Found at i:9706548 original size:2 final size:2
Alignment explanation
Indices: 9706541--9706578 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
9706531 TCAGATATAA
9706541 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
9706579 CATTGCCAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:9723138 original size:17 final size:16
Alignment explanation
Indices: 9723116--9723149 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
9723106 AATTATATCT
*
9723116 TAATTATTTTTAATAAA
1 TAATTATTATTAA-AAA
9723133 TAATTATTATTAAAAA
1 TAATTATTATTAAAAA
9723149 T
1 T
9723150 GAAAAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TAATTATTATTAAAAA
Found at i:9726455 original size:29 final size:30
Alignment explanation
Indices: 9726386--9726466 Score: 74
Period size: 31 Copynumber: 2.7 Consensus size: 30
9726376 AATCTCAAAA
* *
9726386 TTATACGTGAACTATGATTTAATATGCAATT
1 TTATACATGAACTTTGATTT-ATATGCAATT
* * * *
9726417 GTATATATGAACTTTGATTT-TGTGTAATT
1 TTATACATGAACTTTGATTTATATGCAATT
*
9726446 TTATACATGAAATTTTGATTT
1 TTATACATG-AACTTTGATTT
9726467 GATCCAATTC
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 14 0.35
30 10 0.25
31 16 0.40
ACGTcount: A:0.32, C:0.06, G:0.14, T:0.48
Consensus pattern (30 bp):
TTATACATGAACTTTGATTTATATGCAATT
Found at i:9728757 original size:51 final size:52
Alignment explanation
Indices: 9728681--9728796 Score: 162
Period size: 51 Copynumber: 2.2 Consensus size: 52
9728671 AAACTTAATC
* * * * *
9728681 AATTTAATATTAAATTGATATAATATTTATAT-CAATATAAATATTAGATTA
1 AATTTAATATTAAATTAATAGAATATTTATATACAAGATAAACATTAAATTA
* *
9728732 AATTTAATATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTT
1 AATTTAATATTAAATTAATAGAATATTTATATACAAGATAAACATTAAATTA
9728784 AATTTAATATTAA
1 AATTTAATATTAA
9728797 GATAATCATT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
51 29 0.51
52 28 0.49
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (52 bp):
AATTTAATATTAAATTAATAGAATATTTATATACAAGATAAACATTAAATTA
Found at i:9728864 original size:68 final size:72
Alignment explanation
Indices: 9728734--9728864 Score: 189
Period size: 68 Copynumber: 1.9 Consensus size: 72
9728724 TTAGATTAAA
* *
9728734 TTTAATATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTTAATTTAATATTAAGA
1 TTTAATATTAAATTAATAAAATATCTATCTACAAGATAAACATTAAATTTAATTTAATATTAAGA
9728799 TAATCAT
66 TAATCAT
** *
9728806 TTTAATATTAAATTAATAAAATA-CTAT-TA-AA-ATAAGTATTTAATTTAATTTAATATTAA
1 TTTAATATTAAATTAATAAAATATCTATCTACAAGATAAACATTAAATTTAATTTAATATTAA
9728865 ATCTATTAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
68 25 0.46
69 2 0.04
70 2 0.04
71 3 0.06
72 22 0.41
ACGTcount: A:0.50, C:0.04, G:0.03, T:0.44
Consensus pattern (72 bp):
TTTAATATTAAATTAATAAAATATCTATCTACAAGATAAACATTAAATTTAATTTAATATTAAGA
TAATCAT
Found at i:9728871 original size:38 final size:37
Alignment explanation
Indices: 9728791--9728882 Score: 107
Period size: 38 Copynumber: 2.4 Consensus size: 37
9728781 TTTAATTTAA
*
9728791 TATTAAGATAATCATTTTAATATTAAATTAATAAAATAC
1 TATTAAAATAAT-A-TTTAATATTAAATTAATAAAATAC
*
9728830 TATTAAAATAAGTATTTAAT-TTAATTTAATATTAAAT-C
1 TATTAAAATAA-TATTTAATATTAAATTAATA--AAATAC
9728868 TATTAAAATAATATT
1 TATTAAAATAATATT
9728883 ATTTTTGGAA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
37 14 0.29
38 18 0.38
39 15 0.31
40 1 0.02
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (37 bp):
TATTAAAATAATATTTAATATTAAATTAATAAAATAC
Found at i:9728880 original size:68 final size:72
Alignment explanation
Indices: 9728736--9728883 Score: 162
Period size: 68 Copynumber: 2.1 Consensus size: 72
9728726 AGATTAAATT
* *
9728736 TAATATTAAATTAATAGAATATTTATCTACAAGATAAACATTAAATTTAATTTAATATTAAGATA
1 TAATATTAAATTAATAAAATATCTATCTACAAGATAAACATTAAATTTAATTTAATATTAAGATA
***
9728801 ATCATTT
66 ATCAAAA
** *
9728808 TAATATTAAATTAATAAAATA-CTAT-TA-AA-ATAAGTATTTAATTTAATTTAATATTAA-ATC
1 TAATATTAAATTAATAAAATATCTATCTACAAGATAAACATTAAATTTAATTTAATATTAAGAT-
* *
9728868 TATTAAAA
65 AATCAAAA
9728876 TAATATTA
1 TAATATTA
9728884 TTTTTGGAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
67 2 0.03
68 36 0.55
69 2 0.03
70 2 0.03
71 3 0.05
72 20 0.31
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.43
Consensus pattern (72 bp):
TAATATTAAATTAATAAAATATCTATCTACAAGATAAACATTAAATTTAATTTAATATTAAGATA
ATCAAAA
Found at i:9732110 original size:72 final size:72
Alignment explanation
Indices: 9732024--9732157 Score: 191
Period size: 72 Copynumber: 1.9 Consensus size: 72
9732014 AGAATAATTT
* * *
9732024 GATGTTGCTAACACAAGCTTCAGAGAA-TCTGCATCACGTGCTAGATTTCAA-TCCATCGATAAG
1 GATGTTGCTAACACAAGCTTCAGAGAATTC-GCAACACATGCTAGATCTCAAGT-CATCGATAAG
9732087 GTATTATTC
64 GTATTATTC
* *
9732096 GATGTTGCTCACACAAGCTTCAGAGAATTCGCAACACATGCTGGATCTCAAGTCATCGATAA
1 GATGTTGCTAACACAAGCTTCAGAGAATTCGCAACACATGCTAGATCTCAAGTCATCGATAA
9732158 TAAAATCCCT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
72 52 0.95
73 3 0.05
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (72 bp):
GATGTTGCTAACACAAGCTTCAGAGAATTCGCAACACATGCTAGATCTCAAGTCATCGATAAGGT
ATTATTC
Found at i:9732297 original size:18 final size:18
Alignment explanation
Indices: 9732271--9732310 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
9732261 TTCATTTAAT
*
9732271 TTACTGTAAGGTAGTCAA
1 TTACCGTAAGGTAGTCAA
9732289 TTACCGTAAGGTAGTCAA
1 TTACCGTAAGGTAGTCAA
9732307 TTAC
1 TTAC
9732311 ATATCATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.33
Consensus pattern (18 bp):
TTACCGTAAGGTAGTCAA
Found at i:9734507 original size:31 final size:31
Alignment explanation
Indices: 9734472--9734533 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
9734462 AAATATTAAG
9734472 TAAATTCTAAGTTTTGTACTTTATTCAATTT
1 TAAATTCTAAGTTTTGTACTTTATTCAATTT
9734503 TAAATTCTAAGTTTTGTACTTTATTCAATTT
1 TAAATTCTAAGTTTTGTACTTTATTCAATTT
9734534 AGTCCCTATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.06, T:0.55
Consensus pattern (31 bp):
TAAATTCTAAGTTTTGTACTTTATTCAATTT
Found at i:9737710 original size:27 final size:28
Alignment explanation
Indices: 9737656--9737710 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
9737646 TAAAATTGTT
*
9737656 AGAAAAATAAATAATAAAGATTGAAAAA
1 AGAAAAATAAATAATAAAGATTAAAAAA
* *
9737684 AGAAAAATTAA-AATAAAG-TTAATAAA
1 AGAAAAATAAATAATAAAGATTAAAAAA
9737710 A
1 A
9737711 TGTGATGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 7 0.29
27 7 0.29
28 10 0.42
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (28 bp):
AGAAAAATAAATAATAAAGATTAAAAAA
Found at i:9744063 original size:36 final size:36
Alignment explanation
Indices: 9744016--9744089 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
9744006 TGGCATCTCT
9744016 TTCAATTACGTACTTGAACTTGGTTTTAAGGTTTAA
1 TTCAATTACGTACTTGAACTTGGTTTTAAGGTTTAA
9744052 TTCAATTACGTACTTGAACTTGGTTTTAAGGTTTAA
1 TTCAATTACGTACTTGAACTTGGTTTTAAGGTTTAA
9744088 TT
1 TT
9744090 TGGTTTTAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (36 bp):
TTCAATTACGTACTTGAACTTGGTTTTAAGGTTTAA
Found at i:9744427 original size:21 final size:21
Alignment explanation
Indices: 9744388--9744427 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9744378 TAAGGAATAA
* *
9744388 GATTGTATAGAGTTTAAATCT
1 GATTGTATAGAGGTGAAATCT
9744409 GATTGTATAGAGGTGAAAT
1 GATTGTATAGAGGTGAAAT
9744428 ACTACAATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.03, G:0.25, T:0.38
Consensus pattern (21 bp):
GATTGTATAGAGGTGAAATCT
Found at i:9744490 original size:21 final size:21
Alignment explanation
Indices: 9744464--9744504 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9744454 AAGGGATAAG
*
9744464 ATTGTATAAAATTTAAATCTA
1 ATTGTACAAAATTTAAATCTA
* *
9744485 ATTGTACAGAGTTTAAATCT
1 ATTGTACAAAATTTAAATCT
9744505 CTTATGACTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.41
Consensus pattern (21 bp):
ATTGTACAAAATTTAAATCTA
Found at i:9748604 original size:6 final size:6
Alignment explanation
Indices: 9748593--9748617 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9748583 AGACATGGTA
9748593 GGGACC GGGACC GGGACC GGGACC G
1 GGGACC GGGACC GGGACC GGGACC G
9748618 AAGACCAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.52, T:0.00
Consensus pattern (6 bp):
GGGACC
Found at i:9752443 original size:3 final size:3
Alignment explanation
Indices: 9752435--9752462 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
9752425 TACCTTGATT
9752435 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
9752463 GTTTTGATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9756921 original size:16 final size:17
Alignment explanation
Indices: 9756886--9756926 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
9756876 TAACTTTAAG
*
9756886 ATTTAAAAAGATAAATA
1 ATTTAAAAAGATAAACA
*
9756903 ATTTATAAA-ATAAACA
1 ATTTAAAAAGATAAACA
9756919 A-TTAAAAA
1 ATTTAAAAA
9756927 AAAGGATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
15 6 0.29
16 7 0.33
17 8 0.38
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
ATTTAAAAAGATAAACA
Found at i:9757236 original size:17 final size:17
Alignment explanation
Indices: 9757197--9757235 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
9757187 AAATCTAATT
*
9757197 CATTTGATATATTTAAA
1 CATTTTATATATTTAAA
9757214 CATTTTATATA-TTAAA
1 CATTTTATATATTTAAA
*
9757230 TATTTT
1 CATTTT
9757236 TCTAAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (17 bp):
CATTTTATATATTTAAA
Found at i:9760809 original size:20 final size:21
Alignment explanation
Indices: 9760784--9760826 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
9760774 AAAATTTATA
9760784 ATATTA-TTTTATGAATA-AGT
1 ATATTATTTTTAT-AATATAGT
9760804 ATATTATTTTTATAATATAGT
1 ATATTATTTTTATAATATAGT
9760825 AT
1 AT
9760827 GAACACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (21 bp):
ATATTATTTTTATAATATAGT
Found at i:9762350 original size:15 final size:15
Alignment explanation
Indices: 9762325--9762359 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
9762315 GACTCTATTT
*
9762325 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
9762339 TAATTAATATTAAGA
1 TAATTAATATTAAGA
9762354 TAATTA
1 TAATTA
9762360 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:9764720 original size:40 final size:40
Alignment explanation
Indices: 9764676--9764848 Score: 192
Period size: 40 Copynumber: 4.4 Consensus size: 40
9764666 CCAGTTTGGT
* *
9764676 ACCCAGTGCCTCATCGGATAATTCGAAGTAATAGATTGAC
1 ACCCAGTGTCTCATCGGATAAATCGAAGTAATAGATTGAC
* *
9764716 ACCCAATGTCTCATCGGCTAAATCGAAGTAATAGATTGAC
1 ACCCAGTGTCTCATCGGATAAATCGAAGTAATAGATTGAC
* * *
9764756 ACTCAGTGTCTCATCGGCTAAATCGAAGT-A-A-ATTGGC
1 ACCCAGTGTCTCATCGGATAAATCGAAGTAATAGATTGAC
* * * * * *
9764793 ACCCAGTGCCTCATTGAATTAATCTGAAGTAGTAAATTGAC
1 ACCCAGTGTCTCATCGGATAAATC-GAAGTAATAGATTGAC
9764834 A-CCAGTGTCTCATCG
1 ACCCAGTGTCTCATCG
9764849 ATTCGAAGTC
Statistics
Matches: 112, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
37 23 0.21
38 6 0.05
39 1 0.01
40 76 0.68
41 6 0.05
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.27
Consensus pattern (40 bp):
ACCCAGTGTCTCATCGGATAAATCGAAGTAATAGATTGAC
Found at i:9765871 original size:38 final size:41
Alignment explanation
Indices: 9765828--9765907 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
9765818 ATTATAATGT
9765828 TATATATATTT-AC-TTAA-ATATTAAGTAATATATATTATAA
1 TATATAT-TTTAACTTTAATATATTAA-TAATATATATTATAA
*
9765868 TATATATTTTAACTTTAATTTATTAATAATATATATTATA
1 TATATATTTTAACTTTAATATATTAATAATATATATTATA
9765908 CTTTTACACT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
39 3 0.08
40 9 0.25
41 18 0.50
42 6 0.17
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (41 bp):
TATATATTTTAACTTTAATATATTAATAATATATATTATAA
Found at i:9772842 original size:3 final size:3
Alignment explanation
Indices: 9772834--9772869 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
9772824 CACTTCCTTC
9772834 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9772870 AAAATCACTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9773869 original size:19 final size:19
Alignment explanation
Indices: 9773845--9773938 Score: 143
Period size: 19 Copynumber: 4.8 Consensus size: 19
9773835 AATTTTTTAG
9773845 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
9773864 GATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
9773883 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
9773904 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
9773923 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
9773939 ATATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
19 50 0.75
21 17 0.25
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9773890 original size:40 final size:38
Alignment explanation
Indices: 9773845--9773945 Score: 143
Period size: 40 Copynumber: 2.7 Consensus size: 38
9773835 AATTTTTTAG
*
9773845 GATATGCAATCTTAGATATGATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATATGATATGCAATACAAGATAT
**
9773883 GATATATGCAATCTTAGATATGATATGCAATATTAGATAT
1 G--ATATGCAATCTTAGATATGATATGCAATACAAGATAT
9773923 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
9773946 ATTTTGTAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
36 5 0.09
37 2 0.03
38 16 0.28
40 35 0.60
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.35
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATACAAGATAT
Found at i:9775618 original size:97 final size:98
Alignment explanation
Indices: 9775433--9775626 Score: 345
Period size: 97 Copynumber: 2.0 Consensus size: 98
9775423 AAAAATCATG
*
9775433 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
9775498 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
9775531 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAAC-TATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
9775595 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
9775627 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
97 49 0.53
98 43 0.47
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:9781418 original size:11 final size:11
Alignment explanation
Indices: 9781402--9781449 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
9781392 AGTTCAAATT
9781402 CAAAAAAAAAA
1 CAAAAAAAAAA
*
9781413 CAAAAACAAAA
1 CAAAAAAAAAA
*
9781424 CAAAAACAAAA
1 CAAAAAAAAAA
*
9781435 -AAACAAAAAA
1 CAAAAAAAAAA
*
9781445 TAAAA
1 CAAAA
9781450 GTGAAAGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 8 0.25
11 24 0.75
ACGTcount: A:0.85, C:0.12, G:0.00, T:0.02
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:9781449 original size:14 final size:14
Alignment explanation
Indices: 9781406--9781443 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 14
9781396 CAAATTCAAA
9781406 AAAAAAACAAAAAC
1 AAAAAAACAAAAAC
9781420 ---AAAACAAAAAC
1 AAAAAAACAAAAAC
9781431 AAAAAAACAAAAA
1 AAAAAAACAAAAA
9781444 ATAAAAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
11 11 0.52
14 10 0.48
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAAAAC
Found at i:9782849 original size:44 final size:44
Alignment explanation
Indices: 9782774--9783245 Score: 173
Period size: 44 Copynumber: 10.7 Consensus size: 44
9782764 CCAAGCCTTG
* * * * *
9782774 TCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTA
* * **
9782818 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTA
* * * *** * *
9782862 TCTTTCC-AAG-A-TAGTGGGAAGCAAATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ATTGTAGATCTTA
* * * * *
9782906 TCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTA
** ** * *
9782950 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTA
* * *** * *
9782994 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CCAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ATTGTAGATCTTA
* * * * *
9783038 TCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTA
** ** *
9783082 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTA
* * *** * *
9783126 TCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAGCCA-CAAAG-CCTTG
1 TC-TCCCTAAGCAGTAGT-GG-AGCAGATTGAAG--ATTGTAGATCTTA
* * * * *
9783170 TCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTA
* *
9783214 TCTCCCTAAGCAATAGTGGAGCAGATCGAAGA
1 TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGA
9783246 CGGCGGATCT
Statistics
Matches: 299, Mismatches: 99, Indels: 60
0.65 0.22 0.13
Matches are distributed among these distances:
42 15 0.05
43 25 0.08
44 228 0.76
45 21 0.07
46 10 0.03
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (44 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATTGAAGATTGTAGATCTTA
Found at i:9783308 original size:132 final size:132
Alignment explanation
Indices: 9782700--9783295 Score: 1057
Period size: 132 Copynumber: 4.5 Consensus size: 132
9782690 CTGCATTGAC
*
9782700 AGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
9782765 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
9782830 GT
131 GT
* * *
9782832 AGTGGAGCAGATCGAAGATGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAAATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
9782897 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
9782962 GT
131 GT
* *
9782964 AGTGGAGCAGATCAAAGACGGCAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
9783029 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
9783094 GT
131 GT
* **
9783096 AGTGGAGCAGATCAAAGACGGTAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
9783161 AAAGCCTTGTCTCCCTGAGCAGCAGTGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
*
9783226 AT
131 GT
*
9783228 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
9783293 CAA
66 CAA
9783296 ATCCTATCTC
Statistics
Matches: 443, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 443 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:9783830 original size:19 final size:19
Alignment explanation
Indices: 9783805--9783915 Score: 150
Period size: 19 Copynumber: 5.7 Consensus size: 19
9783795 AATTTTTTAG
9783805 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
9783824 AATATGCAATCCAAGATAT
1 GATATGCAATCTTAGATAT
9783843 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
*
9783864 GATATGCAATATTAGATAT
1 GATATGCAATCTTAGATAT
**
9783883 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9783902 GATATGCAATCTTA
1 GATATGCAATCTTA
9783916 AAATATATGA
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
19 61 0.78
21 17 0.22
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9783850 original size:40 final size:40
Alignment explanation
Indices: 9783806--9783912 Score: 164
Period size: 40 Copynumber: 2.7 Consensus size: 40
9783796 ATTTTTTAGG
*
9783806 ATATGCAATCTTAGATATAATATGCAATCCAAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
***
9783846 ATATGCAATCTTAGATATGATATGCAATATTAGATATGAT
1 ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
9783886 ATAT--AATCTTAGATATGATATGCAATC
1 ATATGCAATCTTAGATATGATATGCAATC
9783913 TTAAAATATA
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
38 22 0.35
40 40 0.65
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (40 bp):
ATATGCAATCTTAGATATGATATGCAATCCAAGATATGAT
Found at i:9783872 original size:59 final size:57
Alignment explanation
Indices: 9783805--9783915 Score: 150
Period size: 59 Copynumber: 1.9 Consensus size: 57
9783795 AATTTTTTAG
* *
9783805 GATATGCAATCTTAGATATAATATGCAATCCAAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATATTAGATATAATATACAATCCAAGATATG--ATATGCAATCTTAGATAT
* * **
9783864 GATATGCAATATTAGATATGATATATAATCTTAGATATGATATGCAATCTTA
1 GATATGCAATATTAGATATAATATACAATCCAAGATATGATATGCAATCTTA
9783916 AAATATATGA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 13 0.28
59 33 0.72
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.36
Consensus pattern (57 bp):
GATATGCAATATTAGATATAATATACAATCCAAGATATGATATGCAATCTTAGATAT
Found at i:9785518 original size:98 final size:98
Alignment explanation
Indices: 9785395--9785589 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
9785385 AAAAATCATG
*
9785395 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
9785460 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
9785493 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
9785558 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
9785590 TTTATTGTAT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:9791837 original size:37 final size:37
Alignment explanation
Indices: 9791736--9791857 Score: 147
Period size: 37 Copynumber: 3.3 Consensus size: 37
9791726 ACGAAAAGTT
* * *
9791736 GCTCAATCAAGCAAATCTTACCGTTACACTGAATGAA
1 GCTCAATCGAGCAAATCTTACCATTATACTGAATGAA
*
9791773 GCTCAGTCGAGCAAATCTTACCATTATACTGAATGAA
1 GCTCAATCGAGCAAATCTTACCATTATACTGAATGAA
* * *
9791810 GCTCAATCGAGCAAATCCT-CCTTTTATACTGAGTGAA
1 GCTCAATCGAGCAAATCTTACC-ATTATACTGAATGAA
* *
9791847 ACTCAAACGAG
1 GCTCAATCGAG
9791858 AAAAAATTTA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
36 2 0.03
37 72 0.97
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (37 bp):
GCTCAATCGAGCAAATCTTACCATTATACTGAATGAA
Found at i:9797401 original size:2 final size:2
Alignment explanation
Indices: 9797394--9797418 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9797384 TCCATCGCTT
9797394 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
9797419 TTCTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:9801139 original size:18 final size:18
Alignment explanation
Indices: 9801116--9801153 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
9801106 AGGCATGCAT
9801116 ACAGATCATTGAATAAAC
1 ACAGATCATTGAATAAAC
9801134 ACAGATCATTGAATAAAC
1 ACAGATCATTGAATAAAC
9801152 AC
1 AC
9801154 CTGTTAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.50, C:0.18, G:0.11, T:0.21
Consensus pattern (18 bp):
ACAGATCATTGAATAAAC
Found at i:9804140 original size:33 final size:33
Alignment explanation
Indices: 9804103--9804171 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
9804093 CTCAAAGATA
*
9804103 AATTACAGCCAGACTTCGAGCTGTAAATAAAAG
1 AATTACAGCCAGACTTCGAGCAGTAAATAAAAG
*
9804136 AATTACAGCCAGACTTCGAGCAGTGAATAAAAG
1 AATTACAGCCAGACTTCGAGCAGTAAATAAAAG
9804169 AAT
1 AAT
9804172 AACACAATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.20
Consensus pattern (33 bp):
AATTACAGCCAGACTTCGAGCAGTAAATAAAAG
Found at i:9813739 original size:9 final size:9
Alignment explanation
Indices: 9813721--9813814 Score: 89
Period size: 9 Copynumber: 10.4 Consensus size: 9
9813711 TTCGGTTAAA
*
9813721 AATTAACCG
1 AATTACCCG
9813730 AATTACCCG
1 AATTACCCG
* *
9813739 AATTAACCA
1 AATTACCCG
*
9813748 AATTACCCA
1 AATTACCCG
* **
9813757 AATTAACTT
1 AATTACCCG
9813766 AATTACCCG
1 AATTACCCG
9813775 AATTACCCG
1 AATTACCCG
*
9813784 AATTACCCA
1 AATTACCCG
* *
9813793 AATTACTCA
1 AATTACCCG
*
9813802 AATTAACCG
1 AATTACCCG
9813811 AATT
1 AATT
9813815 GAATCACTAT
Statistics
Matches: 70, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 70 1.00
ACGTcount: A:0.43, C:0.26, G:0.05, T:0.27
Consensus pattern (9 bp):
AATTACCCG
Found at i:9813744 original size:18 final size:18
Alignment explanation
Indices: 9813720--9813797 Score: 102
Period size: 18 Copynumber: 4.3 Consensus size: 18
9813710 TTTCGGTTAA
9813720 AAATTAACCGAATTACCC
1 AAATTAACCGAATTACCC
* *
9813738 GAATTAACCAAATTACCC
1 AAATTAACCGAATTACCC
**
9813756 AAATTAACTTAATTACCC
1 AAATTAACCGAATTACCC
* *
9813774 GAATTACCCGAATTACCC
1 AAATTAACCGAATTACCC
9813792 AAATTA
1 AAATTA
9813798 CTCAAATTAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.44, C:0.26, G:0.05, T:0.26
Consensus pattern (18 bp):
AAATTAACCGAATTACCC
Found at i:9813760 original size:36 final size:36
Alignment explanation
Indices: 9813720--9813814 Score: 120
Period size: 36 Copynumber: 2.6 Consensus size: 36
9813710 TTTCGGTTAA
*
9813720 AAATTAACCGAATTACCCGAATTAACCAAATTACCC
1 AAATTAACCAAATTACCCGAATTAACCAAATTACCC
** * *
9813756 AAATTAACTTAATTACCCGAATTACCCGAATTACCC
1 AAATTAACCAAATTACCCGAATTAACCAAATTACCC
*
9813792 AAATT-ACTCAAATTAACCGAATT
1 AAATTAAC-CAAATTACCCGAATT
9813815 GAATCACTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
35 2 0.04
36 49 0.96
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.26
Consensus pattern (36 bp):
AAATTAACCAAATTACCCGAATTAACCAAATTACCC
Found at i:9813798 original size:18 final size:18
Alignment explanation
Indices: 9813721--9813814 Score: 100
Period size: 18 Copynumber: 5.2 Consensus size: 18
9813711 TTCGGTTAAA
*
9813721 AATTAACCGAATTACCCG
1 AATTAACCAAATTACCCG
*
9813739 AATTAACCAAATTACCCA
1 AATTAACCAAATTACCCG
**
9813757 AATTAACTTAATTACCCG
1 AATTAACCAAATTACCCG
* * *
9813775 AATTACCCGAATTACCCA
1 AATTAACCAAATTACCCG
*
9813793 AATT-ACTCAAATTAACCG
1 AATTAAC-CAAATTACCCG
9813811 AATT
1 AATT
9813815 GAATCACTAT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
17 1 0.02
18 61 0.98
ACGTcount: A:0.43, C:0.26, G:0.05, T:0.27
Consensus pattern (18 bp):
AATTAACCAAATTACCCG
Found at i:9816878 original size:4 final size:4
Alignment explanation
Indices: 9816869--9816897 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
9816859 TTTTATGTTA
9816869 AGTT AGTT AGTT AGTT AGTT AGTT AGTT A
1 AGTT AGTT AGTT AGTT AGTT AGTT AGTT A
9816898 AGGTTATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
AGTT
Found at i:9818837 original size:31 final size:32
Alignment explanation
Indices: 9818778--9818842 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
9818768 GGCAAATTAC
9818778 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
9818810 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
9818841 AA
1 AA
9818843 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:9822033 original size:20 final size:20
Alignment explanation
Indices: 9822018--9822069 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
9822008 TCTTTTGCGC
9822018 TTTTTGCTTTTTTTTTACTG
1 TTTTTGCTTTTTTTTTACTG
* *
9822038 TTTTTGCTGTTTTTTTTATTT
1 TTTTTGCT-TTTTTTTTACTG
9822059 TTTTTGCTTTT
1 TTTTTGCTTTT
9822070 ATTTAAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 11 0.38
21 18 0.62
ACGTcount: A:0.04, C:0.08, G:0.10, T:0.79
Consensus pattern (20 bp):
TTTTTGCTTTTTTTTTACTG
Found at i:9822044 original size:29 final size:28
Alignment explanation
Indices: 9821976--9822033 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 28
9821966 GGTAGGCAAC
9821976 TTTTTTTTTGCGCTTTTTGCTTCTTCTT
1 TTTTTTTTTGCGCTTTTTGCTTCTTCTT
9822004 TTTTTCTTTTGCGCTTTTTGCTT-TT-TT
1 TTTTT-TTTTGCGCTTTTTGCTTCTTCTT
9822031 TTT
1 TTT
9822034 ACTGTTTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
27 5 0.17
28 7 0.24
29 17 0.59
ACGTcount: A:0.00, C:0.16, G:0.10, T:0.74
Consensus pattern (28 bp):
TTTTTTTTTGCGCTTTTTGCTTCTTCTT
Found at i:9822674 original size:31 final size:32
Alignment explanation
Indices: 9822615--9822679 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
9822605 GGCAAATTAC
9822615 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
9822647 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
9822678 AA
1 AA
9822680 ATTATCTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.39
32 20 0.61
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (32 bp):
AAGAGTAATTGAATCCTAATAAAAACTCTTTA
Found at i:9823080 original size:36 final size:37
Alignment explanation
Indices: 9823013--9823090 Score: 106
Period size: 36 Copynumber: 2.2 Consensus size: 37
9823003 CTCGTATCAT
* *
9823013 TAAAA-TATAAAAATTATAGAAAAATATTAATAATGA
1 TAAAAGTATAAAAATAATAGAAAAATAGTAATAATGA
* *
9823049 TAAAAGTATAAAAATAATA-AATAATAGTAATAATTA
1 TAAAAGTATAAAAATAATAGAAAAATAGTAATAATGA
9823085 TAAAAG
1 TAAAAG
9823091 GCTTAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 25 0.68
37 12 0.32
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.29
Consensus pattern (37 bp):
TAAAAGTATAAAAATAATAGAAAAATAGTAATAATGA
Found at i:9826082 original size:26 final size:26
Alignment explanation
Indices: 9826053--9826104 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
9826043 TCTTTTTATC
9826053 TATTATTACATTCACTTCGGGAAATG
1 TATTATTACATTCACTTCGGGAAATG
9826079 TATTATTACATTCACTTCGGGAAATG
1 TATTATTACATTCACTTCGGGAAATG
9826105 GAGTAGAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (26 bp):
TATTATTACATTCACTTCGGGAAATG
Found at i:9827579 original size:14 final size:15
Alignment explanation
Indices: 9827542--9827635 Score: 95
Period size: 15 Copynumber: 6.4 Consensus size: 15
9827532 CATACATTAA
* *
9827542 GGTTCACACATTTAG
1 GGTTCGCACATATAG
*
9827557 GGTTAGCACATAT-G
1 GGTTCGCACATATAG
*
9827571 GGTTCGCACATCTAG
1 GGTTCGCACATATAG
* *
9827586 GTTTCACACATAT-G
1 GGTTCGCACATATAG
9827600 GGTTCGCACATATA-
1 GGTTCGCACATATAG
*
9827614 GGATCTGCACATATAG
1 GGTTC-GCACATATAG
9827630 GGTTCG
1 GGTTCG
9827636 TATACTAAAT
Statistics
Matches: 63, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
14 28 0.44
15 31 0.49
16 4 0.06
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (15 bp):
GGTTCGCACATATAG
Found at i:9827580 original size:29 final size:29
Alignment explanation
Indices: 9827542--9827635 Score: 102
Period size: 29 Copynumber: 3.2 Consensus size: 29
9827532 CATACATTAA
* * *
9827542 GGTTCACACATTTAGGGTTAGCACATATG
1 GGTTCGCACATATAGGATTAGCACATATG
* *
9827571 GGTTCGCACATCTAGGTTTCA-CACATATG
1 GGTTCGCACATATAGGATT-AGCACATATG
9827600 GGTTCGCACATATAGGATCT-GCACATATAG
1 GGTTCGCACATATAGGAT-TAGCACATAT-G
9827630 GGTTCG
1 GGTTCG
9827636 TATACTAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
29 47 0.84
30 9 0.16
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (29 bp):
GGTTCGCACATATAGGATTAGCACATATG
Found at i:9827649 original size:23 final size:23
Alignment explanation
Indices: 9827623--9827684 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
9827613 AGGATCTGCA
*
9827623 CATATAGGGTTCGTATACTAAAT
1 CATATAGGGTTCGCATACTAAAT
* * *
9827646 CATATGGGGTTTGCATACTGAAT
1 CATATAGGGTTCGCATACTAAAT
*
9827669 C-TATAAGGGTTTGCAT
1 CATAT-AGGGTTCGCAT
9827685 GTAGGTTTGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
22 3 0.09
23 30 0.91
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (23 bp):
CATATAGGGTTCGCATACTAAAT
Found at i:9827801 original size:34 final size:33
Alignment explanation
Indices: 9827744--9828073 Score: 426
Period size: 34 Copynumber: 9.7 Consensus size: 33
9827734 AATCATATAT
* *
9827744 TATATAACTTGGGAGTTCGCATACTACATCATAC
1 TATATAACATGGG-GTTCGCATACTACGTCATAC
* * * **
9827778 TATATAACATAGAGGTTCACATACCACGTCATGT
1 TATATAACAT-GGGGTTCGCATACTACGTCATAC
9827812 TATATAACATGGGGGTTCGCATACTACGTCATAC
1 TATATAACAT-GGGGTTCGCATACTACGTCATAC
9827846 TATATAACATGGGAGTTCGCATACTACGTCATAC
1 TATATAACATGGG-GTTCGCATACTACGTCATAC
*
9827880 TATATATCATGGGGGTTCGCATACTACGTCATAC
1 TATATAACAT-GGGGTTCGCATACTACGTCATAC
* *
9827914 TATATAACATAAGGGTTCACATACTACGTCATAC
1 TATATAACAT-GGGGTTCGCATACTACGTCATAC
* *
9827948 TATATAACATGAGGGTTCGCATACTACATCATAG
1 TATATAACATG-GGGTTCGCATACTACGTCATAC
* * *
9827982 TATATAACATGGGGGTTTGCATGCTATGTCATAC
1 TATATAACAT-GGGGTTCGCATACTACGTCATAC
9828016 TATATAACATGGGGATTCGCATACTACGTCATAC
1 TATATAACATGGGG-TTCGCATACTACGTCATAC
9828050 TATATAACATAAGGGGTTCGCATA
1 TATATAACAT--GGGGTTCGCATA
9828074 TATAAGACTT
Statistics
Matches: 258, Mismatches: 30, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
33 7 0.03
34 233 0.90
35 14 0.05
36 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (33 bp):
TATATAACATGGGGTTCGCATACTACGTCATAC
Found at i:9828128 original size:23 final size:24
Alignment explanation
Indices: 9828098--9828150 Score: 90
Period size: 23 Copynumber: 2.2 Consensus size: 24
9828088 GGTTCGTATA
9828098 TAAAACTTGTAGAGTTCACATAT-
1 TAAAACTTGTAGAGTTCACATATG
*
9828121 TAAAACTTGTAGAGTTCACATGTG
1 TAAAACTTGTAGAGTTCACATATG
9828145 TAAAAC
1 TAAAAC
9828151 ATATTTCGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 22 0.79
24 6 0.21
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (24 bp):
TAAAACTTGTAGAGTTCACATATG
Found at i:9829574 original size:15 final size:15
Alignment explanation
Indices: 9829556--9829588 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9829546 AGATTATATC
9829556 AAATTAAAATATAAT
1 AAATTAAAATATAAT
*
9829571 AAATTTAAATATAAT
1 AAATTAAAATATAAT
9829586 AAA
1 AAA
9829589 AAGACTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATTAAAATATAAT
Found at i:9829850 original size:22 final size:23
Alignment explanation
Indices: 9829825--9829868 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
9829815 GAAACATTAT
9829825 TTTTTTTGA-ATATTAT-AAAATA
1 TTTTTTT-ATATATTATGAAAATA
9829847 TTTTTTTATATATTATGAAAAT
1 TTTTTTTATATATTATGAAAAT
9829869 GTTATACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 1 0.05
22 14 0.70
23 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (23 bp):
TTTTTTTATATATTATGAAAATA
Found at i:9829954 original size:19 final size:21
Alignment explanation
Indices: 9829922--9829984 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
9829912 AATATTACTA
9829922 AAATT-TTATGAAAAATAT-G
1 AAATTATTATGAAAAATATAG
*
9829941 AAATTATTAT-AAAAATTTAG
1 AAATTATTATGAAAAATATAG
*
9829961 AAATTA-TA-GAAAATTATTAG
1 AAATTATTATGAAAAATA-TAG
9829981 AAAT
1 AAAT
9829985 AATAAAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 19 0.51
20 18 0.49
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.37
Consensus pattern (21 bp):
AAATTATTATGAAAAATATAG
Found at i:9829963 original size:20 final size:20
Alignment explanation
Indices: 9829922--9830006 Score: 63
Period size: 19 Copynumber: 4.3 Consensus size: 20
9829912 AATATTACTA
*
9829922 AAATT-TTATGAAAAATAT-G
1 AAATTATTAT-AAAAATTTAG
9829941 AAATTATTATAAAAATTTAG
1 AAATTATTATAAAAATTTAG
* *
9829961 AAATTA-TAGAAAATTATTAG
1 AAATTATTATAAAAAT-TTAG
* *
9829981 AAA-TAATA-AAAAATTATAA
1 AAATTATTATAAAAATT-TAG
9830000 AAATTAT
1 AAATTAT
9830007 AAAAGCTAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
18 1 0.02
19 31 0.57
20 22 0.41
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (20 bp):
AAATTATTATAAAAATTTAG
Found at i:9830010 original size:8 final size:9
Alignment explanation
Indices: 9829870--9830010 Score: 72
Period size: 10 Copynumber: 14.9 Consensus size: 9
9829860 TATGAAAATG
*
9829870 TTATACAAA
1 TTATAAAAA
*
9829879 TTAT-ACAA
1 TTATAAAAA
9829887 TTATAGAAAA
1 TTATA-AAAA
* **
9829897 TCATAATTA
1 TTATAAAAA
*
9829906 TTATTAAATA
1 TTA-TAAAAA
*
9829916 TTACTAAAATT
1 TTA-TAAAA-A
9829927 TTATGAAAAA
1 TTAT-AAAAA
*
9829937 -TATGAAATTA
1 TTAT-AAA-AA
9829947 TTATAAAAA
1 TTATAAAAA
*
9829956 TT-TAGAAA
1 TTATAAAAA
9829964 TTATAGAAAA
1 TTATA-AAAA
*
9829974 TTATTAGAAA
1 TTA-TAAAAA
*
9829984 TAATAAAAAA
1 TTAT-AAAAA
9829994 TTATAAAAA
1 TTATAAAAA
9830003 TTATAAAA
1 TTATAAAA
9830011 GCTAAACCAA
Statistics
Matches: 101, Mismatches: 20, Indels: 22
0.71 0.14 0.15
Matches are distributed among these distances:
8 13 0.13
9 34 0.34
10 42 0.42
11 12 0.12
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (9 bp):
TTATAAAAA
Found at i:9838622 original size:23 final size:24
Alignment explanation
Indices: 9838586--9838637 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
9838576 AGTTATTCTG
*
9838586 TAAAATAAATTGTACGTAATTT-C
1 TAAAATAAATTGTAAGTAATTTGC
*
9838609 TAAAATAACA-TGTAAGTATTTTGC
1 TAAAATAA-ATTGTAAGTAATTTGC
9838633 TAAAA
1 TAAAA
9838638 ATATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 18 0.72
24 7 0.28
ACGTcount: A:0.46, C:0.08, G:0.10, T:0.37
Consensus pattern (24 bp):
TAAAATAAATTGTAAGTAATTTGC
Found at i:9840728 original size:3 final size:3
Alignment explanation
Indices: 9840720--9840748 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
9840710 TCCTTTTCCA
9840720 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
9840749 AATGGTTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:9849330 original size:17 final size:18
Alignment explanation
Indices: 9849288--9849330 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
9849278 TTTTGTAACG
9849288 AAAAAATTGATAATTTTT
1 AAAAAATTGATAATTTTT
*
9849306 AAATAATT-AT-ATTTTT
1 AAAAAATTGATAATTTTT
9849322 AGAAAAATT
1 A-AAAAATT
9849331 TGGTAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 7 0.32
17 8 0.36
18 7 0.32
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
AAAAAATTGATAATTTTT
Found at i:9850095 original size:20 final size:20
Alignment explanation
Indices: 9850072--9850267 Score: 100
Period size: 20 Copynumber: 9.8 Consensus size: 20
9850062 CTTTTTCATT
9850072 TTTTTGGTATTCCCTCATAA
1 TTTTTGGTATTCCCTCATAA
* *
9850092 TTTTTAGTACATT--CTCAT-G
1 TTTTTGGT--ATTCCCTCATAA
*
9850111 TTTTTGGCACTT-CCTCATAA
1 TTTTTGGTA-TTCCCTCATAA
*
9850131 TTGTTGGTATTCCCTCATAA
1 TTTTTGGTATTCCCTCATAA
** * *
9850151 TTTTTGGTATTTTCTAAGAA
1 TTTTTGGTATTCCCTCATAA
* * **
9850171 TTTTTAGTACTT-CCTCGTGTTC
1 TTTTTGGTA-TTCCCTC--ATAA
*
9850193 TTTTTTGTATTCCCTCATAA
1 TTTTTGGTATTCCCTCATAA
*
9850213 TTTCTT-GTACTT-CCTCATAT
1 TTT-TTGGTA-TTCCCTCATAA
* ** *
9850233 TTTTTGATACACCCTCATTA
1 TTTTTGGTATTCCCTCATAA
*
9850253 TTTTTGGTAATCCCT
1 TTTTTGGTATTCCCT
9850268 TATGCTTTTT
Statistics
Matches: 130, Mismatches: 32, Indels: 28
0.68 0.17 0.15
Matches are distributed among these distances:
17 1 0.01
18 2 0.02
19 15 0.12
20 89 0.68
21 8 0.06
22 15 0.12
ACGTcount: A:0.19, C:0.20, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTTTGGTATTCCCTCATAA
Found at i:9850115 original size:39 final size:39
Alignment explanation
Indices: 9850054--9850236 Score: 133
Period size: 39 Copynumber: 4.6 Consensus size: 39
9850044 TTTCATATTT
** *
9850054 TTTTTA-TACTTTTTCATTTTTTTGGTATTCCCTCATAA
1 TTTTTAGTACTTCCTCATATTTTTGGTATTCCCTCATAA
* *
9850092 TTTTTAGTACATT-CTCATGTTTTTGGCACTT-CCTCATAA
1 TTTTTAGTAC-TTCCTCATATTTTTGGTA-TTCCCTCATAA
* * ** * *
9850131 TTGTTGGTA-TTCCCTCATAATTTTTGGTATTTTCTAAGAA
1 TTTTTAGTACTT-CCTCAT-ATTTTTGGTATTCCCTCATAA
* * *
9850171 TTTTTAGTACTTCCTCGTGTTCTTTTTTGTATTCCCTCATAA
1 TTTTTAGTACTTCCTC---ATATTTTTGGTATTCCCTCATAA
9850213 TTTCTT-GTACTTCCTCATATTTTT
1 TTT-TTAGTACTTCCTCATATTTTT
9850237 TGATACACCC
Statistics
Matches: 112, Mismatches: 21, Indels: 23
0.72 0.13 0.15
Matches are distributed among these distances:
37 2 0.02
38 6 0.05
39 43 0.38
40 28 0.25
41 2 0.02
42 28 0.25
43 3 0.03
ACGTcount: A:0.18, C:0.18, G:0.09, T:0.55
Consensus pattern (39 bp):
TTTTTAGTACTTCCTCATATTTTTGGTATTCCCTCATAA
Found at i:9850115 original size:40 final size:40
Alignment explanation
Indices: 9850054--9850257 Score: 143
Period size: 40 Copynumber: 5.1 Consensus size: 40
9850044 TTTCATATTT
**
9850054 TTTTTA-TACTTTTTCAT-TTTTTTGGTATTCCCTCATAA
1 TTTTTAGTACTTCCTCATATTTTTTGGTATTCCCTCATAA
* *
9850092 TTTTTAGTACATT-CTCAT-GTTTTTGGCACTT-CCTCATAA
1 TTTTTAGTAC-TTCCTCATATTTTTTGGTA-TTCCCTCATAA
* * * ** * *
9850131 TTGTTGGTA-TTCCCTCATAATTTTTGGTATTTTCTAAGAA
1 TTTTTAGTACTT-CCTCATATTTTTTGGTATTCCCTCATAA
* * *
9850171 TTTTTAGTACTTCCTCGTGTTCTTTTTTGTATTCCCTCATAA
1 TTTTTAGTACTTCCTCAT-AT-TTTTTGGTATTCCCTCATAA
* ** *
9850213 TTTCTT-GTACTTCCTCATATTTTTTGATACACCCTCATTA
1 TTT-TTAGTACTTCCTCATATTTTTTGGTATTCCCTCATAA
9850253 TTTTT
1 TTTTT
9850258 GGTAATCCCT
Statistics
Matches: 128, Mismatches: 27, Indels: 21
0.73 0.15 0.12
Matches are distributed among these distances:
37 2 0.02
38 6 0.05
39 39 0.30
40 47 0.37
41 3 0.02
42 29 0.23
43 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.09, T:0.54
Consensus pattern (40 bp):
TTTTTAGTACTTCCTCATATTTTTTGGTATTCCCTCATAA
Found at i:9850716 original size:21 final size:19
Alignment explanation
Indices: 9850690--9850756 Score: 73
Period size: 21 Copynumber: 3.3 Consensus size: 19
9850680 GTATCCCCTT
9850690 ATATTTTTTCGATACTTCCTC
1 ATATTTTTT-G-TACTTCCTC
9850711 ATATTTTTTGGTA-TTCCCTC
1 ATATTTTTT-GTACTT-CCTC
*
9850731 ATAATTTTTTGTACTTCTTC
1 AT-ATTTTTTGTACTTCCTC
9850751 ATATTT
1 ATATTT
9850757 ATTGGCATTC
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 6 0.15
20 16 0.39
21 19 0.46
ACGTcount: A:0.19, C:0.18, G:0.06, T:0.57
Consensus pattern (19 bp):
ATATTTTTTGTACTTCCTC
Found at i:9850730 original size:20 final size:20
Alignment explanation
Indices: 9850677--9850789 Score: 79
Period size: 20 Copynumber: 5.6 Consensus size: 20
9850667 CAAACCAAAA
* *
9850677 TTGGTATCCCCTTATATTTT
1 TTGGTATTCCCTCATATTTT
*
9850697 TTCGATACTT-CCTCATATTTT
1 TT-GGTA-TTCCCTCATATTTT
9850718 TTGGTATTCCCTCATAATTTT
1 TTGGTATTCCCTCAT-ATTTT
* *
9850739 TT-GTACTT-CTTCATATTTA
1 TTGGTA-TTCCCTCATATTTT
* * * * *
9850758 TTGGCATTCTCTTAGAATTT
1 TTGGTATTCCCTCATATTTT
9850778 TTGGTATTCCCT
1 TTGGTATTCCCT
9850790 TGTTATATCC
Statistics
Matches: 71, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
19 10 0.14
20 36 0.51
21 24 0.34
22 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.10, T:0.53
Consensus pattern (20 bp):
TTGGTATTCCCTCATATTTT
Found at i:9850754 original size:40 final size:41
Alignment explanation
Indices: 9850676--9850766 Score: 114
Period size: 40 Copynumber: 2.2 Consensus size: 41
9850666 ACAAACCAAA
* *
9850676 ATTGGTATCCCCTTATATTTTTTCGATACTTCCTCATATTT
1 ATTGGTATTCCCTCATATTTTTTCGATACTTCCTCATATTT
* *
9850717 TTTGGTATTCCCTCATAATTTTTT-G-TACTTCTTCATATTT
1 ATTGGTATTCCCTCAT-ATTTTTTCGATACTTCCTCATATTT
*
9850757 ATTGGCATTC
1 ATTGGTATTC
9850767 TCTTAGAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
40 22 0.51
41 14 0.33
42 7 0.16
ACGTcount: A:0.19, C:0.20, G:0.09, T:0.53
Consensus pattern (41 bp):
ATTGGTATTCCCTCATATTTTTTCGATACTTCCTCATATTT
Found at i:9850777 original size:40 final size:42
Alignment explanation
Indices: 9850692--9850779 Score: 108
Period size: 40 Copynumber: 2.1 Consensus size: 42
9850682 ATCCCCTTAT
* * *
9850692 ATTTTTTCGATACTTCCTCATATTTTTTGGTATTCCCTCATA
1 ATTTTTTCGATACTTCCTCATATTTATTGGCATTCCCTCAGA
* * *
9850734 ATTTTTT-G-TACTTCTTCATATTTATTGGCATTCTCTTAGA
1 ATTTTTTCGATACTTCCTCATATTTATTGGCATTCCCTCAGA
9850774 ATTTTT
1 ATTTTT
9850780 GGTATTCCCT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
40 32 0.80
41 1 0.03
42 7 0.17
ACGTcount: A:0.19, C:0.17, G:0.08, T:0.56
Consensus pattern (42 bp):
ATTTTTTCGATACTTCCTCATATTTATTGGCATTCCCTCAGA
Found at i:9856169 original size:25 final size:25
Alignment explanation
Indices: 9856116--9856169 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
9856106 AGGGTTAGGG
** *
9856116 TTTTTCTTTTCATTTTTAGTTTAGG
1 TTTTTCTTTTCATTTTTAGAGTAGA
9856141 TTTTCTCTTTTC-TTTTTAGAGTAGA
1 TTTT-TCTTTTCATTTTTAGAGTAGA
9856166 TTTT
1 TTTT
9856170 ATTCTCATAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 18 0.72
26 7 0.28
ACGTcount: A:0.13, C:0.09, G:0.11, T:0.67
Consensus pattern (25 bp):
TTTTTCTTTTCATTTTTAGAGTAGA
Found at i:9856933 original size:13 final size:13
Alignment explanation
Indices: 9856915--9856944 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9856905 GTCAAAACCC
9856915 GTTTTTCAAAATA
1 GTTTTTCAAAATA
*
9856928 GTTTTTCAAAATC
1 GTTTTTCAAAATA
9856941 GTTT
1 GTTT
9856945 GTTTTTCTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.50
Consensus pattern (13 bp):
GTTTTTCAAAATA
Found at i:9857286 original size:6 final size:6
Alignment explanation
Indices: 9857275--9857301 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9857265 CGGAGGAATG
9857275 AGATGA AGATGA AGATGA AGATGA AGA
1 AGATGA AGATGA AGATGA AGATGA AGA
9857302 CGGGGATCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.33, T:0.15
Consensus pattern (6 bp):
AGATGA
Found at i:9857331 original size:18 final size:18
Alignment explanation
Indices: 9857278--9857331 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
9857268 AGGAATGAGA
* *
9857278 TGAAGATGAAGATGAAGA
1 TGAAGATGAAGATGGAGG
* ** *
9857296 TGAAGACGGGGATCGAGG
1 TGAAGATGAAGATGGAGG
9857314 TGAAGATGAAGATGGAGG
1 TGAAGATGAAGATGGAGG
9857332 AAGGAGCCGG
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.39, C:0.04, G:0.43, T:0.15
Consensus pattern (18 bp):
TGAAGATGAAGATGGAGG
Found at i:9857586 original size:11 final size:11
Alignment explanation
Indices: 9857570--9857602 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
9857560 TAATTTTTTA
9857570 TAATAATAATT
1 TAATAATAATT
9857581 TAATAATAATT
1 TAATAATAATT
*
9857592 TTATAA-AATT
1 TAATAATAATT
9857602 T
1 T
9857603 TAAAGGTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 5 0.24
11 16 0.76
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATAATAATT
Found at i:9857911 original size:32 final size:30
Alignment explanation
Indices: 9857849--9857912 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 30
9857839 TGTGAGGTGT
*
9857849 ACAAAAGAATAAACAAATTTTGTACAAAAA
1 ACAAAAGAATAAACAAATTGTGTACAAAAA
*
9857879 ACAAAAGAAAATAAATAAACTTGTGTACAAAAA
1 ACAAAAG--AATAAACAAA-TTGTGTACAAAAA
9857912 A
1 A
9857913 TGAATAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 7 0.24
32 9 0.31
33 13 0.45
ACGTcount: A:0.64, C:0.09, G:0.08, T:0.19
Consensus pattern (30 bp):
ACAAAAGAATAAACAAATTGTGTACAAAAA
Found at i:9862479 original size:41 final size:41
Alignment explanation
Indices: 9862391--9862482 Score: 107
Period size: 41 Copynumber: 2.2 Consensus size: 41
9862381 ACCACATGGC
* *
9862391 CAAGGACATGAACGTGTGCCCAGGCGGTGTGAGCTACGCGGG
1 CAAGGACATGAACGTGTGCCCAAGCGGTGTGAGCTAC-CGGA
* *
9862433 TAAGGACATGAGCGTGTG-CCAAGCGGTGTGAGTCATA-CGGA
1 CAAGGACATGAACGTGTGCCCAAGCGGTGTGAG-C-TACCGGA
9862474 CAAGGACAT
1 CAAGGACAT
9862483 AGGCTCGTGT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
41 24 0.56
42 17 0.40
43 2 0.05
ACGTcount: A:0.26, C:0.21, G:0.37, T:0.16
Consensus pattern (41 bp):
CAAGGACATGAACGTGTGCCCAAGCGGTGTGAGCTACCGGA
Found at i:9863501 original size:35 final size:36
Alignment explanation
Indices: 9863424--9863505 Score: 114
Period size: 35 Copynumber: 2.3 Consensus size: 36
9863414 TAAACATACA
** *
9863424 AGTTCTGTTCTGTTTTGCTCTGCTCCATTCTGTTCT
1 AGTTCTGTTCTGTCCTGCTCTGCTCCATTCTATTCT
*
9863460 A-CTCTGTTCTGTCCTGCTCTGCTCCATTCTATT-T
1 AGTTCTGTTCTGTCCTGCTCTGCTCCATTCTATTCT
9863494 AGTTCTGTTCTG
1 AGTTCTGTTCTG
9863506 CTATTTACCT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
34 2 0.05
35 37 0.93
36 1 0.03
ACGTcount: A:0.07, C:0.27, G:0.16, T:0.50
Consensus pattern (36 bp):
AGTTCTGTTCTGTCCTGCTCTGCTCCATTCTATTCT
Found at i:9864769 original size:21 final size:22
Alignment explanation
Indices: 9864740--9864793 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
9864730 AGAACATGTC
9864740 AACAGAAGCTCGA-GAGAGCTG
1 AACAGAAGCTCGATGAGAGCTG
*
9864761 AATAGAAGCTC-ATGAGAGCTG
1 AACAGAAGCTCGATGAGAGCTG
9864782 AACAGAAGCTCG
1 AACAGAAGCTCG
9864794 TAAAAGCTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.39, C:0.19, G:0.30, T:0.13
Consensus pattern (22 bp):
AACAGAAGCTCGATGAGAGCTG
Found at i:9864801 original size:21 final size:21
Alignment explanation
Indices: 9864740--9864803 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
9864730 AGAACATGTC
9864740 AACAGAAGCTCG-AGAGAGCTG
1 AACAGAAGCTCGTA-AGAGCTG
* * *
9864761 AATAGAAGCTCATGAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
*
9864782 AACAGAAGCTCGTAAAAGCTG
1 AACAGAAGCTCGTAAGAGCTG
9864803 A
1 A
9864804 TCCACCCAAA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.41, C:0.17, G:0.28, T:0.14
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:9875943 original size:13 final size:13
Alignment explanation
Indices: 9875887--9875939 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
9875877 CTTAAACCAA
*
9875887 ACTTTTTAAAAAGT
1 ACTTTTTCAAAA-T
*
9875901 A-TTTCTCAAAAT
1 ACTTTTTCAAAAT
9875913 CACTTTTTCAAAAT
1 -ACTTTTTCAAAAT
9875927 ACTTTTT-AAAAT
1 ACTTTTTCAAAAT
9875939 A
1 A
9875940 ACTTCTCAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
12 7 0.21
13 16 0.47
14 11 0.32
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.43
Consensus pattern (13 bp):
ACTTTTTCAAAAT
Found at i:9881602 original size:36 final size:34
Alignment explanation
Indices: 9881555--9881625 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 34
9881545 CATCTCCGGA
9881555 GCTTGGCAAATAAGGAAAGAGATCTTTTGAAGATAT
1 GCTTGGCAAATAAGGAAAGAGA-CTTTTG-AGATAT
* * *
9881591 GCTTGGCAAATATGGAAGGTGACTTTTGAGATAT
1 GCTTGGCAAATAAGGAAAGAGACTTTTGAGATAT
9881625 G
1 G
9881626 TGATCCTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
34 7 0.22
35 6 0.19
36 19 0.59
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (34 bp):
GCTTGGCAAATAAGGAAAGAGACTTTTGAGATAT
Found at i:9881998 original size:48 final size:48
Alignment explanation
Indices: 9881923--9882017 Score: 163
Period size: 48 Copynumber: 2.0 Consensus size: 48
9881913 TAAGGGAATT
* *
9881923 CTGTTGAATCCTTTATTATTGCGAGTTAAGCTGACTTAGGCGTTTTTA
1 CTGTTGAATCCTTTATTACTGCAAGTTAAGCTGACTTAGGCGTTTTTA
*
9881971 CTGTTGAATCCTTTATTACTGCAAGTTAGGCTGACTTAGGCGTTTTT
1 CTGTTGAATCCTTTATTACTGCAAGTTAAGCTGACTTAGGCGTTTTT
9882018 GAGCAAAGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (48 bp):
CTGTTGAATCCTTTATTACTGCAAGTTAAGCTGACTTAGGCGTTTTTA
Found at i:9886806 original size:36 final size:35
Alignment explanation
Indices: 9886742--9886813 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 35
9886732 CATCTTCGAA
9886742 GCTTGGCAAATAAGGAAAGAAATATTTTGAAGATAT
1 GCTTGGCAAATAAGGAAAGAAATATTTTG-AGATAT
* * ** *
9886778 GCTTGGCAAATATGGAAGGTGATCTTTTGAGATAT
1 GCTTGGCAAATAAGGAAAGAAATATTTTGAGATAT
9886813 G
1 G
9886814 TGATCCTAGA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
35 7 0.23
36 24 0.77
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (35 bp):
GCTTGGCAAATAAGGAAAGAAATATTTTGAGATAT
Found at i:9887182 original size:48 final size:48
Alignment explanation
Indices: 9887111--9887205 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
9887101 TAAGGGAATT
*
9887111 CTGTTGAATCCTTTATTGATGCAAGTTAAGCTGACTTAGGCGTTTTTA
1 CTGTTGAATCCCTTATTGATGCAAGTTAAGCTGACTTAGGCGTTTTTA
*
9887159 CTGTTGAATCCCTTATT-ACTGCAAGTTAGGCTGACTTAGGCGTTTTT
1 CTGTTGAATCCCTTATTGA-TGCAAGTTAAGCTGACTTAGGCGTTTTT
9887206 GAGCAAAGAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.02
48 43 0.98
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (48 bp):
CTGTTGAATCCCTTATTGATGCAAGTTAAGCTGACTTAGGCGTTTTTA
Found at i:9889174 original size:6 final size:6
Alignment explanation
Indices: 9889163--9889189 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9889153 AATAATTAAT
9889163 TTTATA TTTATA TTTATA TTTATA TTT
1 TTTATA TTTATA TTTATA TTTATA TTT
9889190 TTTTAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTATA
Found at i:9890520 original size:81 final size:81
Alignment explanation
Indices: 9890408--9891986 Score: 1373
Period size: 81 Copynumber: 19.5 Consensus size: 81
9890398 TCCATCGCCG
** * * * ** * *
9890408 TCTTACATTAAACGCCTTGAAAGCAAGTACAAACCTGGTTACATAATGGATGAAGAAGAGGACAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
*
9890473 GAGTTCTTCCTCGTCT
66 GAGTTCTTCCTCATCT
* * * * * *
9890489 TCTTACATTTTACGCCTTGAAAGTAAATACAAACCAGGTTATGTAGTGGATGGAGCAGAGGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
9890554 GAGTTCTTCCTCATCT
66 GAGTTCTTCCTCATCT
* * *
9890570 TCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGTAGAGCAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
*
9890635 GAATTCTTCTCCCTCATC-
66 GAGTTC-T-T-CCTCATCT
* * *** * * *
9890653 TCGT--ATTGCACGCCTTGCGGGCAAATACAAGCCGGGTTATGTAGTGGATGGAGCAGACGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
*
9890716 GAGTTCTTCTTCATCT
66 GAGTTCTTCCTCATCT
*
9890732 TCTTACATTTCACGCATTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAA-ATAGAGGAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGA-AGAGGAAA
*
9890796 AGAATTCTTCTCCCTCATC-
65 AGAGTTC-T-T-CCTCATCT
* * * * *
9890815 TCGT--ATTGCACGCCTTGAGAGCAAATACAAGCCGGGTTATGTAGTCGATGAA-ATTGAGGAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGA-AGAGGAAA
* * *
9890877 AGAATTCTT-CTCCCTCA
65 AGAGTTCTTCCT-CATCT
* * * * * ** * * *
9890894 TCTCATATTGCACGCCTTGAGAGCAAATACAAACCCAGTTATGTAGTGGATGGAGCAGACGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
9890959 GAGTTCTTCCTCATCT
66 GAGTTCTTCCTCATCT
* * *
9890975 TCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGGCTTATGGAGTGGATGAAGTAA-AGGAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAG-AAGAGGAAA
*
9891039 AGAATTCTTCTCCCTCATC-
65 AGAGTTC-T-T-CCTCATCT
* * * * * * * *
9891058 TCGTAC--TGCACGCCTTGAGAGCAAATACAAACCGGGTTATGGAGTGGGTGGAGCAGAGGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
9891121 GAGTTCTTCCTCATCT
66 GAGTTCTTCCTCATCT
* * * * * * *
9891137 TCTTACATTTCACGTCTTGAAAGCAAATATAAGCCGAGTTATGGAGTGGATGAAGTAGACGAAGA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
*
9891202 GAATTCTTCTCCCTCATC-
66 GAGTTC-T-T-CCTCATCT
* * * * * * * *
9891220 TCGT--ATTGCTCGCCTTGAGAGCAAATACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGGAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
*
9891283 GATTTCTTCCTCATCT
66 GAGTTCTTCCTCATCT
* * * * * * *
9891299 TCTTACATTTCACGTCTTGAAAGCAAATATAAGCCGAGTTATGGAGTGGATGAAGTAGATGAAGA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
*
9891364 GAATTCTTCTCCCTCATC-
66 GAGTTC-T-T-CCTCATCT
* * * * * * *
9891382 TCGT--ATTGCACACCTTGAGAGCAAATACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
9891445 GAGTTCTTCCTCATCT
66 GAGTTCTTCCTCATCT
* * * * *
9891461 TCTTACATTTCACGTCTTGAAAGCAAATACAAGCCGAGTTATGGAGTGGATGAAGTAGAGGAAGA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
*
9891526 GAATTCTTCTCCCTCATC-
66 GAGTTC-T-T-CCTCATCT
* * * * * * * *
9891544 TCGT--ATTGCACACCTTGAGAGCAAATACAAGCTGGGTTATGGAGTGGATGGAGCAGAGGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
9891607 G-GTTTCTTCCTCATCT
66 GAG-TTCTTCCTCATCT
* * * * * * * * *
9891623 TCCTACATTTCACGTCTTGAAAGTAGATACAAGCCGAGTTATGGAGTGGATGAAGTAGACGAAGA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
* * *
9891688 GAATTCTT-CTCCCTCA
66 GAGTTCTTCCT-CATCT
* * * * * * *
9891704 TCTCATATTGCACGCCTTGAGAGCAAATACAAGCCGGGTTATGGAGTGGATGGAGCAGAGGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
9891769 GAGTTCTTCCTCATCT
66 GAGTTCTTCCTCATCT
* * * * * *
9891785 TCTTACATTTCAAGTCTTGAAAGTAAATACAAGCCGGCTTATGGAGTGGATGAAGTAGAGGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
* *
9891850 GAATTATTCTCCCTCATC-
66 G-A--GTTCTTCCTCATCT
* * * * * ** * * *
9891868 TCGT--ATTGCACACCTTGAGAGCAAGTACAAGCTAGGTTATGGAGTGGATGGAGCAGAGGAAAA
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
9891931 GAGTTCTTCCTCA---
66 GAGTTCTTCCTCATCT
** **
9891944 TCTTATGTTTCACGCCTTGAAAGCAAATATGAGCCGGGTTATG
1 TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATG
9891987 GAGTTGACAA
Statistics
Matches: 1218, Mismatches: 229, Indels: 105
0.78 0.15 0.07
Matches are distributed among these distances:
76 3 0.00
77 2 0.00
78 74 0.06
79 25 0.02
80 10 0.01
81 1011 0.83
82 12 0.01
83 29 0.02
84 52 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (81 bp):
TCTTACATTTCACGCCTTGAAAGCAAATACAAGCCGGGTTATGTAGTGGATGAAGAAGAGGAAAA
GAGTTCTTCCTCATCT
Found at i:9890668 original size:162 final size:161
Alignment explanation
Indices: 9890454--9891990 Score: 1872
Period size: 162 Copynumber: 9.5 Consensus size: 161
9890444 GGTTACATAA
* * * * * * *
9890454 TGGATGAAGAAGAGGACAAGAGTTCTTCCTCGTCTTCTTACATTTTACGCCTTGAAAGTAAATAC
1 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTA-ATTTCACGTCTTGAAAGCAAATAC
* * * * * * *
9890519 AAACCAGGTTATGTAGTGGATGGAGCAGAGGAAAAGAGTTC-T-T-CCTCATCTTCTTACATTTC
65 AAGCC-GGTTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATC-TCGTA-ATTGC
* * *
9890581 ACGTCTTGAAAGCAAATACAAGCCGGGTTATGTAG
127 ACGCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
* * * * * * * ***
9890616 TGGATGAAGTAGAGCAAAAGAATTCTTCTCCCTCATC-TCGT-ATTGCACGCCTTGCGGGCAAAT
1 TGGATGGAGCAGAGGAAAAGAGTTC-T-T-CCTCATCTTCTTAATTTCACGTCTTGAAAGCAAAT
* * * * * *
9890679 ACAAGCCGGGTTATGTAGTGGATGGAGCAGACGAAAAGAGTTCTTCT---TCATCTTCTTACATT
63 ACAAGCC-GGTTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATC-TCGTA-ATT
* * * *
9890741 TCACGCATTGAAAGCAAATACAAGCCGGGTTATGTAG
125 GCACGCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
* ** * * * * *
9890778 TGGATGAAATAGAGGAAAAGAATTCTTCTCCCTCATC-TCGT-ATTGCACGCCTTGAGAGCAAAT
1 TGGATGGAGCAGAGGAAAAGAGTTC-T-T-CCTCATCTTCTTAATTTCACGTCTTGAAAGCAAAT
* * * * *
9890841 ACAAGCCGGGTTATGTAGTCGATGAAATTGAGGAAAAGAATTCTTCTCCCTCATCTCAT-ATTGC
63 ACAAGCC-GGTTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATCTCGTAATTGC
* ** *
9890905 ACGCCTTGAGAGCAAATACAAACCCAGTTATGTAG
127 ACGCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
*
9890940 TGGATGGAGCAGACGAAAAGAGTTCTTCCTCATCTTCTTACATTTCACGTCTTGAAAGCAAATAC
1 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTA-ATTTCACGTCTTGAAAGCAAATAC
* *
9891005 AAGCCGGCTTATGGAGTGGATGAAGTAAAGGAAAAGAATTCTTCTCCCTCATCTCGT-ACTGCAC
65 AAGCCGG-TTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATCTCGTAATTGCAC
*
9891069 GCCTTGAGAGCAAATACAAACCGGGTTATGGAG
129 GCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
* *
9891102 TGGGTGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTACATTTCACGTCTTGAAAGCAAATAT
1 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTA-ATTTCACGTCTTGAAAGCAAATAC
* * *
9891167 AAGCCGAGTTATGGAGTGGATGAAGTAGACGAAGAGAATTCTTCTCCCTCATCTCGT-ATTGCTC
65 AAGCCG-GTTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATCTCGTAATTGCAC
9891231 GCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
129 GCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
* * *
9891264 TGGATGGAGCAGAGGGAAAGATTTCTTCCTCATCTTCTTACATTTCACGTCTTGAAAGCAAATAT
1 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTA-ATTTCACGTCTTGAAAGCAAATAC
* *
9891329 AAGCCGAGTTATGGAGTGGATGAAGTAGATGAAGAGAATTCTTCTCCCTCATCTCGT-ATTGCAC
65 AAGCCG-GTTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATCTCGTAATTGCAC
*
9891393 ACCTTGAGAGCAAATACAAGCCGGGTTATGGAG
129 GCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
9891426 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTACATTTCACGTCTTGAAAGCAAATAC
1 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTA-ATTTCACGTCTTGAAAGCAAATAC
*
9891491 AAGCCGAGTTATGGAGTGGATGAAGTAGAGGAAGAGAATTCTTCTCCCTCATCTCGT-ATTGCAC
65 AAGCCG-GTTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATCTCGTAATTGCAC
* *
9891555 ACCTTGAGAGCAAATACAAGCTGGGTTATGGAG
129 GCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
* * *
9891588 TGGATGGAGCAGAGGAAAAG-GTTTCTTCCTCATCTTCCTACATTTCACGTCTTGAAAGTAGATA
1 TGGATGGAGCAGAGGAAAAGAG-TTCTTCCTCATCTTCTTA-ATTTCACGTCTTGAAAGCAAATA
* * *
9891652 CAAGCCGAGTTATGGAGTGGATGAAGTAGACGAAGAGAATTCTTCTCCCTCATCTCAT-ATTGCA
64 CAAGCCG-GTTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATCTCGTAATTGCA
9891716 CGCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
128 CGCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
* *
9891750 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTACATTTCAAGTCTTGAAAGTAAATAC
1 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTA-ATTTCACGTCTTGAAAGCAAATAC
*
9891815 AAGCCGGCTTATGGAGTGGATGAAGTAGAGGAAAAGAATTATTCTCCCTCATCTCGT-ATTGCAC
65 AAGCCGG-TTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATCTCGTAATTGCAC
* * **
9891879 ACCTTGAGAGCAAGTACAAGCTAGGTTATGGAG
129 GCCTTGAGAGCAAATACAAGCCGGGTTATGGAG
* * * **
9891912 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTT-AT-GTTTCACGCCTTGAAAGCAAATATG
1 TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTAATTTCACGTCTTGAAAGCAAATACA
9891975 AGCCGGGTTATGGAGT
66 AGCC-GGTTATGGAGT
9891991 TGACAAAGAT
Statistics
Matches: 1259, Mismatches: 99, Indels: 37
0.90 0.07 0.03
Matches are distributed among these distances:
159 39 0.03
160 6 0.00
161 6 0.00
162 1185 0.94
163 4 0.00
164 8 0.01
165 11 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (161 bp):
TGGATGGAGCAGAGGAAAAGAGTTCTTCCTCATCTTCTTAATTTCACGTCTTGAAAGCAAATACA
AGCCGGTTATGGAGTGGATGAAGTAGAGGAAAAGAATTCTTCTCCCTCATCTCGTAATTGCACGC
CTTGAGAGCAAATACAAGCCGGGTTATGGAG
Found at i:9892801 original size:47 final size:47
Alignment explanation
Indices: 9892732--9892823 Score: 157
Period size: 47 Copynumber: 2.0 Consensus size: 47
9892722 GTCATGGTGT
*
9892732 TTGGATTCAGGGCTCCACTATTGCAGCCATTTAAGACGTAGCTTTAC
1 TTGGATTCAGGCCTCCACTATTGCAGCCATTTAAGACGTAGCTTTAC
**
9892779 TTGGATTCAGGCCTCCACTATTGTGGCCATTTAAGACGTAGCTTT
1 TTGGATTCAGGCCTCCACTATTGCAGCCATTTAAGACGTAGCTTT
9892824 TGCCGTCACA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (47 bp):
TTGGATTCAGGCCTCCACTATTGCAGCCATTTAAGACGTAGCTTTAC
Found at i:9901418 original size:99 final size:99
Alignment explanation
Indices: 9901242--9901535 Score: 507
Period size: 99 Copynumber: 3.0 Consensus size: 99
9901232 CCGTTCTTCA
* * **
9901242 CCAGAAACTTGGGTGGTCTCCCACGCTTGCATTTTCCCATCTTACCCACCTTACTCTGCACATCC
1 CCAGCAACTTGGGTGGTCTCCCACGCTTACGCTTTCCCATCTTACCCACCTTACTCTGCACATCC
9901307 TTCACTTCACTATGAGACTGATCATTCCCCTTAT
66 TTCACTTCACTATGAGACTGATCATTCCCCTTAT
9901341 CCAGCAACTTGGGTGGTCTCCCACGCTTACGCTTTCCCATCTTACCCACCTTACTCTGCACATCC
1 CCAGCAACTTGGGTGGTCTCCCACGCTTACGCTTTCCCATCTTACCCACCTTACTCTGCACATCC
9901406 TTCACTTCACTATGAGACTGATCATTCCCCTTAT
66 TTCACTTCACTATGAGACTGATCATTCCCCTTAT
* * *
9901440 CCAGCAACTTGGGCGGTCTCCCACGCTTACGCTTTCCCATCTTACCCACCTTTCTCTGCACATCA
1 CCAGCAACTTGGGTGGTCTCCCACGCTTACGCTTTCCCATCTTACCCACCTTACTCTGCACATCC
* *
9901505 TTCACTTCAGTATGAGACAGATCATTCCCCT
66 TTCACTTCACTATGAGACTGATCATTCCCCT
9901536 CCTTAACCAC
Statistics
Matches: 186, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 186 1.00
ACGTcount: A:0.20, C:0.37, G:0.13, T:0.31
Consensus pattern (99 bp):
CCAGCAACTTGGGTGGTCTCCCACGCTTACGCTTTCCCATCTTACCCACCTTACTCTGCACATCC
TTCACTTCACTATGAGACTGATCATTCCCCTTAT
Found at i:9904121 original size:19 final size:21
Alignment explanation
Indices: 9904082--9904122 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9904072 TTCTAAAAAT
9904082 TAAAAATTAAATAAGAATAGA
1 TAAAAATTAAATAAGAATAGA
*
9904103 TAAAAATTTAA-AA-AATAGA
1 TAAAAATTAAATAAGAATAGA
9904122 T
1 T
9904123 CAAGTGAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 2 0.11
21 10 0.53
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (21 bp):
TAAAAATTAAATAAGAATAGA
Found at i:9918661 original size:5 final size:5
Alignment explanation
Indices: 9918652--9918686 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
9918642 TTTATAAAGC
*
9918652 TTATA ATATA TTATA TTATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA
9918687 AAGTTATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TTATA
Found at i:9919654 original size:43 final size:43
Alignment explanation
Indices: 9919592--9919716 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 43
9919582 GGATTCCGAT
*
9919592 ATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAC
1 ATGTGTTTACATGTAAGACCACGTCTGGGACGTTGGCATCGAC
* * **
9919635 CTGTGTTTACGTGTAAGACC-CTGTCTGGGACAG-TGGCATCGGT
1 ATGTGTTTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAC
*
9919678 ATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 ATGTGTTTACATGTAAGACCACGTCTGGGACGTTGGCAT
9919717 TGTATGAGCT
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
42 2 0.03
43 66 0.94
44 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (43 bp):
ATGTGTTTACATGTAAGACCACGTCTGGGACGTTGGCATCGAC
Found at i:9921923 original size:48 final size:48
Alignment explanation
Indices: 9921865--9922214 Score: 592
Period size: 48 Copynumber: 7.3 Consensus size: 48
9921855 ATATACACAC
* *
9921865 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
9921913 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
**
9921961 ATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
9922009 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
9922057 ATATCATACATTTTTCACATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
9922105 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
9922153 ATCTCATACATATTTCACATTAACCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
9922201 ATCTCATAGATATT
1 ATCTCATACATATT
9922215 CGGCTTTACC
Statistics
Matches: 284, Mismatches: 18, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 284 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:9921979 original size:96 final size:96
Alignment explanation
Indices: 9921865--9922332 Score: 712
Period size: 96 Copynumber: 5.0 Consensus size: 96
9921855 ATATACACAC
* *
9921865 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
9921930 CACTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
**
9921961 ATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
9922026 CATTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
* * * *
9922057 ATATCATACATTTTTCACATTAGCCATTCGACTTTACCACATATACATATCTCATATATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
9922122 CATTAGCCATTCGGCTTTACCACATATGCAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
*
9922153 ATCTCATACATATTTCACATTAACCATTCGGCTTTACCACATATACATA--TC-T-C--A--T-A
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
9922209 GA-T----ATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
**
9922235 ATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
9922300 CATTAGCCATTCGGCTTTACCACATATACAT
66 CATTAGCCATTCGGCTTTACCACATATACAT
9922331 AT
1 AT
9922333 ATCCATTCGG
Statistics
Matches: 335, Mismatches: 23, Indels: 28
0.87 0.06 0.07
Matches are distributed among these distances:
82 68 0.20
84 2 0.01
85 1 0.00
86 2 0.01
87 2 0.01
88 2 0.01
90 2 0.01
91 2 0.01
92 1 0.00
93 1 0.00
94 2 0.01
96 250 0.75
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (96 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
CATTAGCCATTCGGCTTTACCACATATACAT
Found at i:9922125 original size:144 final size:142
Alignment explanation
Indices: 9921865--9922335 Score: 750
Period size: 144 Copynumber: 3.4 Consensus size: 142
9921855 ATATACACAC
* * *
9921865 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATCATACAT-TTTCA
9921930 CACTAGCCATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTT
65 CA-TAGCCATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTT
9921995 TACCACATATACAT
129 TACCACATATACAT
9922009 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATCATACATTTTTCA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATCATACA-TTTTCA
* *
9922074 CATTAGCCATTCGACTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTT
65 CA-TAGCCATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTT
*
9922139 TACCACATATGCAT
129 TACCACATATACAT
* *
9922153 ATCTCATACATATTTCACATTAACCATTCGGCTTTACCACATATAC--ATATC-T-CA---T-AG
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATCATACATTTTCAC
9922210 AT----ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTA
66 ATAGCCATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTA
9922271 CCACATATACAT
131 CCACATATACAT
9922283 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATC
9922336 CATTCGGCTT
Statistics
Matches: 311, Mismatches: 13, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
130 113 0.36
132 5 0.02
134 1 0.00
135 2 0.01
136 1 0.00
140 2 0.01
141 1 0.00
142 5 0.02
144 180 0.58
145 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.36
Consensus pattern (142 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATCATACATTTTCAC
ATAGCCATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTA
CCACATATACAT
Found at i:9922219 original size:34 final size:34
Alignment explanation
Indices: 9922178--9922242 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
9922168 CACATTAACC
9922178 ATTCGGCTTTACCACATATACATATCTCATAGAT
1 ATTCGGCTTTACCACATATACATATCTCATAGAT
9922212 ATTCGGCTTTACCACATATACATATCTCATA
1 ATTCGGCTTTACCACATATACATATCTCATA
9922243 TGTATTTCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (34 bp):
ATTCGGCTTTACCACATATACATATCTCATAGAT
Found at i:9922231 original size:130 final size:129
Alignment explanation
Indices: 9921938--9922469 Score: 793
Period size: 130 Copynumber: 4.0 Consensus size: 129
9921928 CACACTAGCC
9921938 ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACAT
9922003 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATATCATACAT
66 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATAC--ATATC-T-CA-
9922068 TTTTCACATT
126 ---T-A-A-T
* *
9922078 AGCCATTCGACTTTACCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTACC
1 ----ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACC
* *
9922143 ACATATGCATATCTCATACATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCAT
62 ACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
9922208 AGAT
127 A-AT
9922212 ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACAT
**
9922277 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATA--T-AT-CC
66 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAAT
* *
9922337 ATTCGGCTTTACCACATATACATATCTCATAGGTATTTCACATTAGCCATTCGACTTTACCACAT
1 ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACAT
**
9922402 ATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
66 ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA-AT
9922467 ATT
1 ATT
9922470 TCACATTAGC
Statistics
Matches: 366, Mismatches: 17, Indels: 24
0.90 0.04 0.06
Matches are distributed among these distances:
125 116 0.32
127 3 0.01
128 3 0.01
130 119 0.33
134 1 0.00
135 2 0.01
136 1 0.00
140 2 0.01
141 1 0.00
142 5 0.01
144 113 0.31
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (129 bp):
ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACAT
ATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAAT
Found at i:9922267 original size:82 final size:82
Alignment explanation
Indices: 9922130--9922296 Score: 289
Period size: 82 Copynumber: 2.0 Consensus size: 82
9922120 CACATTAGCC
*
9922130 ATTCGGCTTTACCACATATGCATATCTCATACATATTTCACATTAACCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCACAT
*
9922195 ATACATATCTCATAGAT
66 ATACATATCTCATACAT
** *
9922212 ATTCGGCTTTACCACATATACATATCTCATATGTATTTCACATTAGCCATTCGGCTTTACCACAT
1 ATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCACAT
9922277 ATACATATCTCATACAT
66 ATACATATCTCATACAT
9922294 ATT
1 ATT
9922297 TCACATTAGC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (82 bp):
ATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCACAT
ATACATATCTCATACAT
Done.