Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 46 of 211
Found at i:13670977 original size:41 final size:41
Alignment explanation
Indices: 13670920--13671005 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 41
13670910 GAAATACAAA
** *
13670920 CAGGGGCACCAAAGTACAAAC-AGCGGCACGTATGTGTAATT
1 CAGGGGCACCAAAGTACAAACAAG-AACACGTATGTGCAATT
* *
13670961 CAGGGGTACCGAAGTACAAACAAGAACACGTATGTGCAATT
1 CAGGGGCACCAAAGTACAAACAAGAACACGTATGTGCAATT
13671002 CAGG
1 CAGG
13671006 AAACAATTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 37 0.95
42 2 0.05
ACGTcount: A:0.36, C:0.21, G:0.27, T:0.16
Consensus pattern (41 bp):
CAGGGGCACCAAAGTACAAACAAGAACACGTATGTGCAATT
Found at i:13673620 original size:21 final size:19
Alignment explanation
Indices: 13673577--13673621 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
13673567 TGTGCAGATT
*
13673577 ACACACTGAGTTTGCGAAA
1 ACACACCGAGTTTGCGAAA
*
13673596 ACACACCGAGTTTGTGAAA
1 ACACACCGAGTTTGCGAAA
13673615 ACACACC
1 ACACACC
13673622 CTTTCTCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.18
Consensus pattern (19 bp):
ACACACCGAGTTTGCGAAA
Found at i:13683244 original size:34 final size:33
Alignment explanation
Indices: 13683203--13683381 Score: 137
Period size: 34 Copynumber: 5.3 Consensus size: 33
13683193 TATCGACTCA
* *
13683203 TTATAAGCATGATTAGTACTACTGTAATGATATG
1 TTATAAGCATGATTATTACTACTGTATTGAT-TG
* * * * * *
13683237 TTTTAAGCATGATAATTTCCATTGTATTGACTCG
1 TTATAAGCATGATTATTACTACTGTATTGA-TTG
* * * * *
13683271 TTATAAGCATGTTTATTACTAATATAATGATCTT
1 TTATAAGCATGATTATTACTACTGTATTGAT-TG
* * *
13683305 TTTTAAGCATGATAATTGCTACTGTATTGATTTG
1 TTATAAGCATGATTATTACTACTGTATTGA-TTG
* *
13683339 TTATAAGCATG-TTATTACTACCGTATTGATCTC
1 TTATAAGCATGATTATTACTACTGTATTGAT-TG
13683372 TTATAA-CATG
1 TTATAAGCATG
13683382 TCATGTTGCA
Statistics
Matches: 110, Mismatches: 31, Indels: 10
0.73 0.21 0.07
Matches are distributed among these distances:
32 5 0.05
33 23 0.21
34 80 0.73
35 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.44
Consensus pattern (33 bp):
TTATAAGCATGATTATTACTACTGTATTGATTG
Found at i:13683269 original size:68 final size:66
Alignment explanation
Indices: 13683139--13683368 Score: 248
Period size: 68 Copynumber: 3.4 Consensus size: 66
13683129 AAATACATGT
* * *
13683139 TAAGCAAGCTTATTGCTACTGTAATGATTTTTTTAAGCATGATAATTGT-TATAT-TATCGACTC
1 TAAGCATG-TTATTACTACTGTAATGATTTTTTTAAGCATGATAATT-TCTAT-TGTATTGACTC
*
13683202 ATTA
63 GTTA
* * *
13683206 TAAGCATGATTAGTACTACTGTAATGATATGTTTTAAGCATGATAATTTCCATTGTATTGACTCG
1 TAAGCATG-TTATTACTACTGTAATGAT-TTTTTTAAGCATGATAATTTCTATTGTATTGACTCG
13683271 TTA
64 TTA
* * * * * *
13683274 TAAGCATGTTTATTACTAATATAATGATCTTTTTTAAGCATGATAATTGCTACTGTATTGATTTG
1 TAAGCATG-TTATTACTACTGTAATGAT-TTTTTTAAGCATGATAATTTCTATTGTATTGACTCG
13683339 TTA
64 TTA
* *
13683342 TAAGCATGTTATTACTACCGTATTGAT
1 TAAGCATGTTATTACTACTGTAATGAT
13683369 CTCTTATAAC
Statistics
Matches: 137, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
67 41 0.30
68 96 0.70
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.43
Consensus pattern (66 bp):
TAAGCATGTTATTACTACTGTAATGATTTTTTTAAGCATGATAATTTCTATTGTATTGACTCGTT
A
Found at i:13684392 original size:23 final size:24
Alignment explanation
Indices: 13684357--13684402 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
13684347 TCAAAGTATT
13684357 AGGATAAACTTGTAA-TTTGCATA
1 AGGATAAACTTGTAATTTTGCATA
13684380 AGGATTAAA-TTGTAATTTTGCAT
1 AGGA-TAAACTTGTAATTTTGCAT
13684403 TAATATGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (24 bp):
AGGATAAACTTGTAATTTTGCATA
Found at i:13692914 original size:35 final size:35
Alignment explanation
Indices: 13692765--13692899 Score: 155
Period size: 35 Copynumber: 3.9 Consensus size: 35
13692755 AATCCAACCA
* * * * *
13692765 AAACACATCAGATGCTCATAAGAGCCAATCCATCCG
1 AAACACACCA-ATGCTCGTAAGAGCTAATCCCTCAG
*
13692801 -AACACACCAATGCTCGTAAGAGCTAATCCCTCAA
1 AAACACACCAATGCTCGTAAGAGCTAATCCCTCAG
* * *
13692835 AAATACACCAATGCTCATAAGAGCTAATCCCTCCG
1 AAACACACCAATGCTCGTAAGAGCTAATCCCTCAG
* *
13692870 AAACACACCAGTGCTCGTAAGAGATAATCC
1 AAACACACCAATGCTCGTAAGAGCTAATCC
13692900 AATTGAAACA
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
34 20 0.24
35 64 0.76
ACGTcount: A:0.39, C:0.30, G:0.13, T:0.18
Consensus pattern (35 bp):
AAACACACCAATGCTCGTAAGAGCTAATCCCTCAG
Found at i:13692915 original size:70 final size:69
Alignment explanation
Indices: 13692755--13692900 Score: 193
Period size: 70 Copynumber: 2.1 Consensus size: 69
13692745 GTACATCGAC
* * *
13692755 AATCCAACCAAAACACATCAGATGCTCATAAGAGCCAATCCATCCGAACACACCAATGCTCGTAA
1 AATCCATCAAAAACACACCA-ATGCTCATAAGAGCCAATCCATCCGAACACACCAATGCTCGTAA
*
13692820 GAGCT
65 GAGAT
* * * * *
13692825 AATCCCTCAAAAATACACCAATGCTCATAAGAGCTAATCCCTCCGAAACACACCAGTGCTCGTAA
1 AATCCATCAAAAACACACCAATGCTCATAAGAGCCAATCCATCCG-AACACACCAATGCTCGTAA
13692890 GAGAT
65 GAGAT
13692895 AATCCA
1 AATCCA
13692901 ATTGAAACAC
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
69 23 0.35
70 42 0.65
ACGTcount: A:0.40, C:0.31, G:0.12, T:0.17
Consensus pattern (69 bp):
AATCCATCAAAAACACACCAATGCTCATAAGAGCCAATCCATCCGAACACACCAATGCTCGTAAG
AGAT
Found at i:13698655 original size:162 final size:162
Alignment explanation
Indices: 13698383--13698707 Score: 569
Period size: 162 Copynumber: 2.0 Consensus size: 162
13698373 AAGACAATGG
13698383 ATAGAACTTCTGAAAGATTATGATTGTGTTATAGATTATCATCCAAGAAAGGCAAATATGGTAGC
1 ATAGAACTTCTGAAAGATTATGATTGTGTTATAGATTATCATCCAAGAAAGGCAAATATGGTAGC
*
13698448 AAATGCATAGAGCAGAAAAGCAGCGGTTGAATTACGGGCAATGTTTGCTCGGCTTAGTATCAATG
66 AAATGCATAGAGCAGAAAAGCAGCGGTTGAATTACGGGAAATGTTTGCTCGGCTTAGTATCAATG
* *
13698513 ATGATGGAAGTTTGTTAGCTGAATTAAAAGTT
131 ATGATAGAAGTTTGTTACCTGAATTAAAAGTT
* *
13698545 ATAGAACTTCTGAAAGATTATGATTGTGTTATAGATTATCATCCAGGAAAGGCAAATGTGGTAGC
1 ATAGAACTTCTGAAAGATTATGATTGTGTTATAGATTATCATCCAAGAAAGGCAAATATGGTAGC
* * *
13698610 AGATGCATTGAGCAGAAAAGCAGCGGTTGAATTACGGGAAATGTTTGCTCGGCTTAGTTTCAATG
66 AAATGCATAGAGCAGAAAAGCAGCGGTTGAATTACGGGAAATGTTTGCTCGGCTTAGTATCAATG
*
13698675 ATGGTAGAAGTTTGTTACCTGAATTAAAAGTT
131 ATGATAGAAGTTTGTTACCTGAATTAAAAGTT
13698707 A
1 A
13698708 AGCCAGTGAT
Statistics
Matches: 154, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
162 154 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (162 bp):
ATAGAACTTCTGAAAGATTATGATTGTGTTATAGATTATCATCCAAGAAAGGCAAATATGGTAGC
AAATGCATAGAGCAGAAAAGCAGCGGTTGAATTACGGGAAATGTTTGCTCGGCTTAGTATCAATG
ATGATAGAAGTTTGTTACCTGAATTAAAAGTT
Found at i:13700509 original size:15 final size:14
Alignment explanation
Indices: 13700465--13700513 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
13700455 TCTAAGATTT
*
13700465 TTATGTATAAAAGTA
1 TTAT-TATAAAATTA
13700480 -TATTATAAAATTA
1 TTATTATAAAATTA
*
13700493 TTATTATTAATATTA
1 TTATTA-TAAAATTA
13700508 TTATTA
1 TTATTA
13700514 AATTGTGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 9 0.30
14 8 0.27
15 13 0.43
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
TTATTATAAAATTA
Found at i:13710014 original size:47 final size:47
Alignment explanation
Indices: 13709945--13710036 Score: 184
Period size: 47 Copynumber: 2.0 Consensus size: 47
13709935 GAACAGGAGG
13709945 GGATGGAGGTTGTTGAGCAGTCGGGTTCATTCGTATGAACTCAGTAA
1 GGATGGAGGTTGTTGAGCAGTCGGGTTCATTCGTATGAACTCAGTAA
13709992 GGATGGAGGTTGTTGAGCAGTCGGGTTCATTCGTATGAACTCAGT
1 GGATGGAGGTTGTTGAGCAGTCGGGTTCATTCGTATGAACTCAGT
13710037 GAAGCATTCA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.22, C:0.13, G:0.35, T:0.30
Consensus pattern (47 bp):
GGATGGAGGTTGTTGAGCAGTCGGGTTCATTCGTATGAACTCAGTAA
Found at i:13712273 original size:34 final size:35
Alignment explanation
Indices: 13712199--13712322 Score: 117
Period size: 35 Copynumber: 3.5 Consensus size: 35
13712189 GTAAATTAAC
* * * * *
13712199 AATCCAACCAAAACACACTAGATGCGCATAAGAGCC
1 AATCCATCCGAAACACACCA-ATGCTCATAAGAGCT
* * *
13712235 AATCCATCTG-AACACATCAATGCTCATAAAAGCT
1 AATCCATCCGAAACACACCAATGCTCATAAGAGCT
* *
13712269 AATCCCTCCGAAACACACCAGTGCTCATAAGAGCT
1 AATCCATCCGAAACACACCAATGCTCATAAGAGCT
*
13712304 AGTCCAAT-CGAAACACACC
1 AATCC-ATCCGAAACACACC
13712323 GAGACAGAGA
Statistics
Matches: 71, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
34 20 0.28
35 43 0.61
36 8 0.11
ACGTcount: A:0.40, C:0.31, G:0.12, T:0.16
Consensus pattern (35 bp):
AATCCATCCGAAACACACCAATGCTCATAAGAGCT
Found at i:13713267 original size:10 final size:10
Alignment explanation
Indices: 13713252--13713276 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
13713242 TTTTTTATTC
13713252 TTTAATTTTG
1 TTTAATTTTG
13713262 TTTAATTTTG
1 TTTAATTTTG
13713272 TTTAA
1 TTTAA
13713277 ACTTTCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (10 bp):
TTTAATTTTG
Found at i:13714598 original size:16 final size:16
Alignment explanation
Indices: 13714577--13714618 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
13714567 CTTTCCATTT
13714577 CAAATTCATATATGCA
1 CAAATTCATATATGCA
* *
13714593 CAAATTCAAATATTCA
1 CAAATTCATATATGCA
*
13714609 -AGATTCATAT
1 CAAATTCATAT
13714619 TAGTTCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 8 0.36
16 14 0.64
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (16 bp):
CAAATTCATATATGCA
Found at i:13716586 original size:12 final size:14
Alignment explanation
Indices: 13716548--13716585 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
13716538 AAAATTATAA
13716548 AATAATAAAAATTC
1 AATAATAAAAATTC
13716562 AATAATTAAAAATTC
1 AATAA-TAAAAATTC
13716577 AATAA-AAAA
1 AATAATAAAA
13716586 TGTGGTTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.17
14 5 0.22
15 14 0.61
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (14 bp):
AATAATAAAAATTC
Found at i:13719747 original size:21 final size:21
Alignment explanation
Indices: 13719703--13719748 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
13719693 GAACATGGCA
*
13719703 GTGTGGCTACTCCACACGCCC
1 GTGTGGCTACTCCACACACCC
* * *
13719724 GTGTGGCTATTTCACACACTC
1 GTGTGGCTACTCCACACACCC
13719745 GTGT
1 GTGT
13719749 ACGTAGACCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.15, C:0.33, G:0.24, T:0.28
Consensus pattern (21 bp):
GTGTGGCTACTCCACACACCC
Found at i:13720797 original size:20 final size:20
Alignment explanation
Indices: 13720763--13720800 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13720753 ATCTTATCGA
**
13720763 TTTAAGTAGTGTGCTTTCTC
1 TTTAAGTAGCATGCTTTCTC
13720783 TTTAAGTAGCATGCTTTC
1 TTTAAGTAGCATGCTTTC
13720801 ATTTACTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.16, G:0.18, T:0.47
Consensus pattern (20 bp):
TTTAAGTAGCATGCTTTCTC
Found at i:13726061 original size:26 final size:26
Alignment explanation
Indices: 13726032--13726119 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 26
13726022 TATAACAATC
13726032 ATTTTACCTTATAGGGTATTTCGGTA
1 ATTTTACCTTATAGGGTATTTCGGTA
*** *
13726058 ATTTTATCCTTCGGGGGTATTTTGGTA
1 ATTTTA-CCTTATAGGGTATTTCGGTA
* * * *
13726085 TTTTTACC-CATCGAGGGTATTTCAGTC
1 ATTTTACCTTAT--AGGGTATTTCGGTA
13726112 ATTTTACC
1 ATTTTACC
13726120 CATCAAGGGT
Statistics
Matches: 46, Mismatches: 13, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
26 8 0.17
27 38 0.83
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.45
Consensus pattern (26 bp):
ATTTTACCTTATAGGGTATTTCGGTA
Found at i:13726076 original size:27 final size:27
Alignment explanation
Indices: 13726044--13726130 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
13726034 TTTACCTTAT
* *
13726044 AGGGTATTTCGGTAATTTTATCCTTCG
1 AGGGTATTTCGGTAATTTTACCCATCG
* * *
13726071 GGGGTATTTTGGTATTTTTACCCATCG
1 AGGGTATTTCGGTAATTTTACCCATCG
* * *
13726098 AGGGTATTTCAGTCATTTTACCCATCA
1 AGGGTATTTCGGTAATTTTACCCATCG
13726125 AGGGTA
1 AGGGTA
13726131 CTTTAGTTAT
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACCCATCG
Found at i:13726142 original size:27 final size:27
Alignment explanation
Indices: 13726086--13726145 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
13726076 ATTTTGGTAT
*
13726086 TTTTACCCATCGAGGGTATTTCAGTCA
1 TTTTACCCATCAAGGGTATTTCAGTCA
*
13726113 TTTTACCCATCAAGGGTACTTT-AGTTA
1 TTTTACCCATCAAGGGTA-TTTCAGTCA
13726140 TTTTAC
1 TTTTAC
13726146 AACCTTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (27 bp):
TTTTACCCATCAAGGGTATTTCAGTCA
Found at i:13734885 original size:41 final size:41
Alignment explanation
Indices: 13734823--13734901 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
13734813 TTTTGAGCTT
*
13734823 TCAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
1 TCAGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGC
* *
13734864 TCAGGGCTTTAGCGGCATTTTTGAGAAAGCGCCGCTAA
1 TCAGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAA
13734902 AAAACCTAAG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (41 bp):
TCAGGGATTTAGCGGCATTTTTAAGAAAGCGCCGCTAATGC
Found at i:13734957 original size:113 final size:112
Alignment explanation
Indices: 13734759--13735350 Score: 817
Period size: 113 Copynumber: 5.2 Consensus size: 112
13734749 AAAATAGGCA
*** * *
13734759 TTAGCGGCGTTTTCCAGAAAGTGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
13734824 CAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
66 C-GGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * * * * *
13734872 TTAGCGGCATTTTTGAGAAAGCGCCGCTAAAAAACCTAAGCCAAACGACACCGTTTTCTAAACTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
* *
13734937 TCGGGATTTAGCGGTGTTTTTAAGAAAGCGCCGCTAATGCTCAGGTCT
65 TCGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
13734985 TTAGCGGCGTTTTTGGGGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGC-T
* * * *
13735050 TTAGGGATTTAGCGACGTTTTTAAGAAAACG-CGCCTAATGCTCAGGTCT
64 TTCGGGATTTAGCGGCGTTTTTAAGAAAGCGCCG-CTAATGCTCAGGGCT
* * * *
13735099 TTAGCGGCGTTTTTGGGAAAGCACCGCAAAAAACCTAAGCCAAACGACGCCATTTTCTGAGATTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
* * * *
13735164 AGGGGATTTAGCGGCATTTTTAAGAAAGCGTCGCTAATGGTCAGGGCT
66 -CGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* * * *
13735212 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAATGACACCGTTTTGTGAGCTT
1 TTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
*
13735277 TCGGGGATTTTGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
65 TC-GGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
13735326 TTAGCGGCGTTTTTGGGAAAGCGCC
1 TTAGCGGCGTTTTTGGGAAAGCGCC
13735351 ACTAATGCTC
Statistics
Matches: 424, Mismatches: 48, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
112 3 0.01
113 219 0.52
114 202 0.48
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (112 bp):
TTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTT
CGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:13735172 original size:227 final size:227
Alignment explanation
Indices: 13734775--13735347 Score: 857
Period size: 227 Copynumber: 2.5 Consensus size: 227
13734765 GCGTTTTCCA
* *
13734775 GAAAGTGCCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTTTCAGGGATTTAGCGGC
1 GAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGC
* * *
13734839 GTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTGAGAAAGCGCCGCTAAAA
66 GTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCACCGCTAAAA
* **
13734904 AACCTAAGCCAAACGACACCGTTTTCTAAACTTTCGGGATTTAGCGGTGTTTTTAAGAAAGCGCC
131 AACCTAAGCCAAACGACACCATTTTCTAAACTTTCGGGATTTAGCGGCATTTTTAAGAAAGCGCC
* *
13734969 GCTAATGCTCAGGTCTTTAGCGGCGTTTTTGG
196 GCTAATGCTCAGGGCTTTAGCGGCATTTTTGG
* * * *
13735001 GGAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTTAGGGATTTAGCGAC
1 GAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGC
* *
13735066 GTTTTTAAGAAAACG-CGCCTAATGCTCAGGTCTTTAGCGGCGTTTTTGGGAAAGCACCGC-AAA
66 GTTTTTAAGAAAGCGCCG-CTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCACCGCTAAA
* * *
13735129 AAACCTAAGCCAAACGACGCCATTTTCTGAGA-TTTAGGGGATTTAGCGGCATTTTTAAGAAAGC
130 AAACCTAAGCCAAACGACACCATTTTCT-AAACTTT-CGGGATTTAGCGGCATTTTTAAGAAAGC
* *
13735193 GTCGCTAATGGTCAGGGCTTTAGCGGCATTTTTGG
193 GCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTGG
* * * * *
13735228 GAAAGCGCCGCAAAAAAACCTAAGCCCAATGACACCGTTTTGTGAGCTTTCGGGGATTTTGCGGC
1 GAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGC
13735293 GTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGC
66 GTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGC
13735348 GCCACTAATG
Statistics
Matches: 310, Mismatches: 32, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
226 43 0.14
227 265 0.85
228 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (227 bp):
GAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGC
GTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGAAAGCACCGCTAAAA
AACCTAAGCCAAACGACACCATTTTCTAAACTTTCGGGATTTAGCGGCATTTTTAAGAAAGCGCC
GCTAATGCTCAGGGCTTTAGCGGCATTTTTGG
Found at i:13735346 original size:41 final size:41
Alignment explanation
Indices: 13735280--13735369 Score: 135
Period size: 41 Copynumber: 2.2 Consensus size: 41
13735270 TGAGCTTTCG
* *
13735280 GGGATTTTGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCA
1 GGGATTTAGCGGCGTTTTTAAGAAAGCGCCACTAATGCTCA
* **
13735321 GGGCTTTAGCGGCGTTTTTGGGAAAGCGCCACTAATGCTCA
1 GGGATTTAGCGGCGTTTTTAAGAAAGCGCCACTAATGCTCA
13735362 GGGATTTA
1 GGGATTTA
13735370 AAATAATTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (41 bp):
GGGATTTAGCGGCGTTTTTAAGAAAGCGCCACTAATGCTCA
Found at i:13735613 original size:22 final size:20
Alignment explanation
Indices: 13735588--13735669 Score: 65
Period size: 21 Copynumber: 3.9 Consensus size: 20
13735578 GTGTTACCAT
13735588 TTTAAGGTTTATGGATTATAGG
1 TTTAAGG-TTATGGATTAT-GG
*
13735610 TTTAGAGGTTATGGTTTATGG
1 TTTA-AGGTTATGGATTATGG
* * * *
13735631 TTTAAAGGCTAGGGTTTAAGG
1 TTT-AAGGTTATGGATTATGG
*
13735652 TTTAAAGGTTATGTATTA
1 TTT-AAGGTTATGGATTA
13735670 AGGGTTTATG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
21 32 0.64
22 15 0.30
23 3 0.06
ACGTcount: A:0.27, C:0.01, G:0.28, T:0.44
Consensus pattern (20 bp):
TTTAAGGTTATGGATTATGG
Found at i:13735661 original size:8 final size:7
Alignment explanation
Indices: 13735588--13735712 Score: 53
Period size: 7 Copynumber: 17.6 Consensus size: 7
13735578 GTGTTACCAT
13735588 TTTAAGG
1 TTTAAGG
*
13735595 TTTATGG
1 TTTAAGG
*
13735602 ATTATAGG
1 TTTA-AGG
13735610 TTTAGAGG
1 TTTA-AGG
*
13735618 -TTATGG
1 TTTAAGG
*
13735624 TTTATGG
1 TTTAAGG
13735631 TTTAAAGG
1 TTT-AAGG
* *
13735639 -CTAGGG
1 TTTAAGG
13735645 TTTAAGG
1 TTTAAGG
13735652 TTTAAAGG
1 TTT-AAGG
*
13735660 -TT-ATG
1 TTTAAGG
13735665 TATTAAGGG
1 T-TTAA-GG
*
13735674 TTTATGGG
1 TTTA-AGG
*
13735682 TTTAGGG
1 TTTAAGG
13735689 TTTAA-G
1 TTTAAGG
*
13735695 TTTATGG
1 TTTAAGG
*
13735702 TTTAGGG
1 TTTAAGG
13735709 TTTA
1 TTTA
13735713 GATTAACTAG
Statistics
Matches: 90, Mismatches: 17, Indels: 22
0.70 0.13 0.17
Matches are distributed among these distances:
5 2 0.02
6 10 0.11
7 51 0.57
8 25 0.28
9 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (7 bp):
TTTAAGG
Found at i:13735670 original size:21 final size:20
Alignment explanation
Indices: 13735607--13735677 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
13735597 TATGGATTAT
*
13735607 AGGTTTAGAGGTTATGGTTTA
1 AGGTTTAAAGGTTAT-GTTTA
* * *
13735628 TGGTTTAAAGGCTAGGGTTTA
1 AGGTTTAAAGGTTA-TGTTTA
13735649 AGGTTTAAAGGTTATGTATTA
1 AGGTTTAAAGGTTATGT-TTA
13735670 AGGGTTTA
1 A-GGTTTA
13735678 TGGGTTTAGG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.05
21 32 0.80
22 6 0.15
ACGTcount: A:0.27, C:0.01, G:0.31, T:0.41
Consensus pattern (20 bp):
AGGTTTAAAGGTTATGTTTA
Found at i:13735705 original size:20 final size:21
Alignment explanation
Indices: 13735673--13735712 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
13735663 TGTATTAAGG
13735673 GTTTATGGGTTTAGGGTTTAA
1 GTTTATGGGTTTAGGGTTTAA
13735694 GTTTAT-GGTTTAGGGTTTA
1 GTTTATGGGTTTAGGGTTTA
13735713 GATTAACTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (21 bp):
GTTTATGGGTTTAGGGTTTAA
Found at i:13735713 original size:7 final size:7
Alignment explanation
Indices: 13735670--13735713 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
13735660 TTATGTATTA
13735670 AGGGTTT
1 AGGGTTT
13735677 ATGGGTTT
1 A-GGGTTT
13735685 AGGGTTT
1 AGGGTTT
*
13735692 A-AGTTT
1 AGGGTTT
*
13735698 ATGGTTT
1 AGGGTTT
13735705 AGGGTTT
1 AGGGTTT
13735712 AG
1 AG
13735714 ATTAACTAGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
6 5 0.16
7 20 0.62
8 7 0.22
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (7 bp):
AGGGTTT
Found at i:13736052 original size:22 final size:21
Alignment explanation
Indices: 13735985--13736052 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
13735975 AAGGTTTAGA
* *
13735985 GGTTAGTAGTTAGGGATTATG
1 GGTTAGAAGTTAGGGATTAAG
* * *
13736006 GGTTAAAAGTTAGTGATTTAGG
1 GGTTAGAAGTTAGGGA-TTAAG
*
13736028 GGTTAGAATTTAGGGATTCAAG
1 GGTTAGAAGTTAGGGATT-AAG
13736050 GGT
1 GGT
13736053 CGGGTTAGGG
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
21 15 0.41
22 22 0.59
ACGTcount: A:0.28, C:0.01, G:0.35, T:0.35
Consensus pattern (21 bp):
GGTTAGAAGTTAGGGATTAAG
Found at i:13740232 original size:43 final size:43
Alignment explanation
Indices: 13740184--13740425 Score: 153
Period size: 43 Copynumber: 5.6 Consensus size: 43
13740174 TAAACACCCT
13740184 TAAAGAACCATACT-TTTAGCGGCGTTTGTGACAAAAGCGCCAC
1 TAAAG-ACCATACTCTTTAGCGGCGTTTGTGACAAAAGCGCCAC
* ** *** *
13740227 TAAAGATCATGTTCTTTAGCGGCGTTTGTGGGTAAAGCGTCAC
1 TAAAGACCATACTCTTTAGCGGCGTTTGTGACAAAAGCGCCAC
** * * *** *
13740270 TAAAGGTCATGCTCTTTAGCGACGTTTGTGGGTAAAGCGCCGC
1 TAAAGACCATACTCTTTAGCGGCGTTTGTGACAAAAGCGCCAC
** ** * *** *
13740313 TAAAGGTCATGTTCTTTAGCGACGTTTGTGGGTAAAGCGCCGC
1 TAAAGACCATACTCTTTAGCGGCGTTTGTGACAAAAGCGCCAC
* ** * *** *
13740356 TAAAGAACATGTTCTTTAACGGCGTTTGTGTGTAAAGCGCCGC
1 TAAAGACCATACTCTTTAGCGGCGTTTGTGACAAAAGCGCCAC
* **
13740399 TAAAGATCATGTTCTTTAGCGGCGTTT
1 TAAAGACCATACTCTTTAGCGGCGTTT
13740426 TTTTACATAA
Statistics
Matches: 178, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
42 5 0.03
43 173 0.97
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
TAAAGACCATACTCTTTAGCGGCGTTTGTGACAAAAGCGCCAC
Found at i:13740329 original size:86 final size:86
Alignment explanation
Indices: 13740184--13740425 Score: 333
Period size: 86 Copynumber: 2.8 Consensus size: 86
13740174 TAAACACCCT
* ** *
13740184 TAAAGAACCATACT-TTTAGCGGCGTTTGTGACAAAAGCGCCACTAAAGATCATGTTCTTTAGCG
1 TAAAGAA-CATGCTCTTTAGCGGCGTTTGTGAGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCG
*
13740248 GCGTTTGTGGGTAAAGCGTCAC
65 GCGTTTGTGGGTAAAGCGCCAC
** * * * *
13740270 TAAAGGTCATGCTCTTTAGCGACGTTTGTGGGTAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGA
1 TAAAGAACATGCTCTTTAGCGGCGTTTGTGAGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
*
13740335 CGTTTGTGGGTAAAGCGCCGC
66 CGTTTGTGGGTAAAGCGCCAC
* * *
13740356 TAAAGAACATGTTCTTTAACGGCGTTTGTGTGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
1 TAAAGAACATGCTCTTTAGCGGCGTTTGTGAGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
13740421 CGTTT
66 CGTTT
13740426 TTTTACATAA
Statistics
Matches: 135, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
85 5 0.04
86 130 0.96
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (86 bp):
TAAAGAACATGCTCTTTAGCGGCGTTTGTGAGTAAAGCGCCGCTAAAGATCATGTTCTTTAGCGG
CGTTTGTGGGTAAAGCGCCAC
Found at i:13740562 original size:22 final size:22
Alignment explanation
Indices: 13740519--13740562 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
13740509 TAGTGGCGCT
**
13740519 AAAAAGCACCGCTAAAGGCCTA
1 AAAAAGCACCGCTAAAAACCTA
*
13740541 AAAAAGCGCCGCTAAAAACCTA
1 AAAAAGCACCGCTAAAAACCTA
13740563 TTTTGGTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.27, G:0.16, T:0.09
Consensus pattern (22 bp):
AAAAAGCACCGCTAAAAACCTA
Found at i:13743768 original size:18 final size:18
Alignment explanation
Indices: 13743719--13743768 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
13743709 TAAAAAAATA
*
13743719 TTTTGAAATTGAATAACG
1 TTTTGAAAATGAATAACG
* * *
13743737 ATTTGTAAATGAATAATG
1 TTTTGAAAATGAATAACG
*
13743755 TTTTGAAAACGAAT
1 TTTTGAAAATGAAT
13743769 GGCACGATTG
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.42, C:0.04, G:0.16, T:0.38
Consensus pattern (18 bp):
TTTTGAAAATGAATAACG
Found at i:13748179 original size:22 final size:22
Alignment explanation
Indices: 13748151--13748195 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
13748141 TAACACAAAT
13748151 AGTTTAAGCAAGAACTTGGGCA
1 AGTTTAAGCAAGAACTTGGGCA
*
13748173 AGTTTAAGCTAGAACTTGGGCA
1 AGTTTAAGCAAGAACTTGGGCA
13748195 A
1 A
13748196 ATTATGGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.24
Consensus pattern (22 bp):
AGTTTAAGCAAGAACTTGGGCA
Found at i:13750664 original size:18 final size:18
Alignment explanation
Indices: 13750620--13750667 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
13750610 GCAATAAAAA
13750620 AATGTTTTGAAATTGAAT
1 AATGTTTTGAAATTGAAT
* *
13750638 AACGATTTGTAAA-TGAAT
1 AATGTTTTG-AAATTGAAT
13750656 AATGTTTTGAAA
1 AATGTTTTGAAA
13750668 ACGAACAACA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 3 0.12
18 19 0.76
19 3 0.12
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.40
Consensus pattern (18 bp):
AATGTTTTGAAATTGAAT
Found at i:13753394 original size:25 final size:26
Alignment explanation
Indices: 13753366--13753414 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
13753356 ATATGTTTCC
13753366 ATATAACT-TATTCATAT-ACCATTCT
1 ATATAACTAT-TTCATATAACCATTCT
*
13753391 ATATATCTATTTCATATAACCATT
1 ATATAACTATTTCATATAACCATT
13753415 TCATTTTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.37, C:0.18, G:0.00, T:0.45
Consensus pattern (26 bp):
ATATAACTATTTCATATAACCATTCT
Found at i:13754428 original size:27 final size:28
Alignment explanation
Indices: 13754386--13754438 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
13754376 ATTTTTTATA
13754386 ATATTTTTTACAA-TTTTATAAAAAATT
1 ATATTTTTTACAATTTTTATAAAAAATT
*
13754413 ATATTTTTTACGATTTTTATAAAAAA
1 ATATTTTTTACAATTTTTATAAAAAA
13754439 ATACATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (28 bp):
ATATTTTTTACAATTTTTATAAAAAATT
Found at i:13754430 original size:28 final size:27
Alignment explanation
Indices: 13754386--13754438 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
13754376 ATTTTTTATA
13754386 ATATTTTTTACAATTTTATAAAAAATT
1 ATATTTTTTACAATTTTATAAAAAATT
*
13754413 ATATTTTTTACGATTTTTATAAAAAA
1 ATATTTTTTAC-AATTTTATAAAAAA
13754439 ATACATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (27 bp):
ATATTTTTTACAATTTTATAAAAAATT
Found at i:13756000 original size:20 final size:20
Alignment explanation
Indices: 13755975--13756020 Score: 85
Period size: 19 Copynumber: 2.4 Consensus size: 20
13755965 AGGAAAATAA
13755975 TTTCTGAAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
13755995 TTTCTG-AAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
13756014 TTTCTGA
1 TTTCTGA
13756021 TGTTTAGATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:13756044 original size:39 final size:36
Alignment explanation
Indices: 13756001--13756084 Score: 105
Period size: 36 Copynumber: 2.2 Consensus size: 36
13755991 TACTTTTCTG
*
13756001 AAAATGATTTACTTTTCTGATGTTTAGATGAATCTATGT
1 AAAAT-ATTTACTGTT-TG-TGTTTAGATGAATCTATGT
* * *
13756040 AAAATATTTTCTGTTTGTGTTTGGATGAATTTATGT
1 AAAATATTTACTGTTTGTGTTTAGATGAATCTATGT
13756076 AAAATATTT
1 AAAATATTT
13756085 TCTATTGTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
36 26 0.63
37 2 0.05
38 8 0.20
39 5 0.12
ACGTcount: A:0.31, C:0.05, G:0.15, T:0.49
Consensus pattern (36 bp):
AAAATATTTACTGTTTGTGTTTAGATGAATCTATGT
Found at i:13758050 original size:27 final size:27
Alignment explanation
Indices: 13758012--13758064 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
13758002 TATTAACAGC
13758012 ACAGCCTTAAATTCTAACAGTTTAGTT
1 ACAGCCTTAAATTCTAACAGTTTAGTT
*
13758039 ACAGCCTTAAATTCTAATAGTTTAGT
1 ACAGCCTTAAATTCTAACAGTTTAGT
13758065 CGGTATCAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.38
Consensus pattern (27 bp):
ACAGCCTTAAATTCTAACAGTTTAGTT
Found at i:13759393 original size:22 final size:23
Alignment explanation
Indices: 13759366--13759411 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
13759356 AATAAACTTG
* *
13759366 TCATTTTTGT-TTAAAAATTAAT
1 TCATTTATGTATTAAAAACTAAT
13759388 TCATTTATGTCATTAAAAACTAAT
1 TCATTTATGT-ATTAAAAACTAAT
13759412 ATAATAGACG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
24 11 0.55
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.48
Consensus pattern (23 bp):
TCATTTATGTATTAAAAACTAAT
Found at i:13762182 original size:5 final size:5
Alignment explanation
Indices: 13762169--13762198 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
13762159 TGCAGCTTAG
*
13762169 GTTTG GTTTT GTTTT GTTTT GTTTT GTTTT
1 GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT
13762199 TTCTTTGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (5 bp):
GTTTT
Found at i:13766176 original size:209 final size:206
Alignment explanation
Indices: 13765816--13766225 Score: 549
Period size: 209 Copynumber: 2.0 Consensus size: 206
13765806 GTTATTGCAT
* * * * *
13765816 ACATTGGCTAAGTTTGGGATTGTGGTGTCTTATTTTTAATTTAATTCTTTTTACTTAGATCTAGT
1 ACATTGGCCAAGTTTGGGATTGTGGTATCTTATATTTAAGTTAATTCTTTTCACTTAGATCTAGT
* * **
13765881 TGTTATTACTATTTCAAAGCCTAGTTTTCTCATTGCCTAGTTTGCTATGTTGTTGCTACTTGTTC
66 TGTTATTACTATTTCAAAGCCTAGTTTGCTCATTGACTAGTTTGCTATGTTGTTGCTACTACTTC
*
13765946 TATCTTTAATGATGCAAGATTGTTTAAATTGCTAATATTGGTCCTATACATATAAGAGAGCA-TG
131 TATCTTTAATGATGCAAGATTG-TTAAATTGCTAATATTGGGCC--TACATATAAGAGAG-AGTG
13766010 TAAGTAATATGTCAC
192 TAAGTAATATGTCAC
* *
13766025 ACATTGGCCAAGTTTGGGATTGTTGTATCTTATATTTAAGTTAATTCTTTTCACTT-TATCTAGT
1 ACATTGGCCAAGTTTGGGATTGTGGTATCTTATATTTAAGTTAATTCTTTTCACTTAGATCTAGT
* ** * * *
13766089 TGTTGTTACTA-TTCATAA-CCTAGTTTGCTTGTTGACTAGTTTGTTATGTTTGTTGTTGCTACT
66 TGTTATTACTATTTCA-AAGCCTAGTTTGCTCATTGACTAGTTTGCTATG-TTGTTGCTACTACT
* *
13766152 CTCTATTTTTAATGATGCAAGATTGTTAAATTGCTAATATTGGGCCTACATATGAGAGAGAGTGT
129 -TCTATCTTTAATGATGCAAGATTGTTAAATTGCTAATATTGGGCCTACATATAAGAGAGAGTGT
13766217 AAGTAATAT
193 AAGTAATAT
13766226 ATGTGTGGGT
Statistics
Matches: 177, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
205 1 0.01
206 25 0.14
207 29 0.16
208 49 0.28
209 73 0.41
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (206 bp):
ACATTGGCCAAGTTTGGGATTGTGGTATCTTATATTTAAGTTAATTCTTTTCACTTAGATCTAGT
TGTTATTACTATTTCAAAGCCTAGTTTGCTCATTGACTAGTTTGCTATGTTGTTGCTACTACTTC
TATCTTTAATGATGCAAGATTGTTAAATTGCTAATATTGGGCCTACATATAAGAGAGAGTGTAAG
TAATATGTCAC
Found at i:13766272 original size:49 final size:49
Alignment explanation
Indices: 13766200--13766323 Score: 153
Period size: 49 Copynumber: 2.5 Consensus size: 49
13766190 ATTGGGCCTA
* * * *
13766200 CATATGAGAGAGAGTGTAAGTAATATAT-GTGTGGGTAAACTTGGTTTTT
1 CATAT-AGAGAGAGTGCAAGTAATATATCATGTCGGTAAACTTGGTGTTT
13766249 CATATAAGAGAGAGTGCAAGTAATATATCACATGTCGGTAAACTTGGTGTTT
1 CATAT-AGAGAGAGTGCAAGTAATATAT--CATGTCGGTAAACTTGGTGTTT
*
13766301 CATAT-GAGAGTGTGCAAGTAATA
1 CATATAGAGAGAGTGCAAGTAATA
13766324 CGTTTGGAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
49 26 0.39
50 17 0.26
52 23 0.35
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (49 bp):
CATATAGAGAGAGTGCAAGTAATATATCATGTCGGTAAACTTGGTGTTT
Found at i:13773793 original size:78 final size:78
Alignment explanation
Indices: 13773659--13773816 Score: 271
Period size: 78 Copynumber: 2.0 Consensus size: 78
13773649 AATACTTAAA
* * *
13773659 ATTATTATTTATAAACCCTATGGTTTGCCCTACCTATCTGTCTATTACTCTCCCATGGAATGGAA
1 ATTACTATTTATAAACCCTATGCTTTGCCCTACCTAGCTGTCTATTACTCTCCCATGGAATGGAA
*
13773724 GGTCTTTTGGTGT
66 GATCTTTTGGTGT
*
13773737 ATTACTATTTATAAACCCTATGCTTTGCCCTACCTAGCTGTCTATTACTCTTCCATGGAATGGAA
1 ATTACTATTTATAAACCCTATGCTTTGCCCTACCTAGCTGTCTATTACTCTCCCATGGAATGGAA
13773802 GATCTTTTGGTGT
66 GATCTTTTGGTGT
13773815 AT
1 AT
13773817 GTTTTTCCTT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
78 75 1.00
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.41
Consensus pattern (78 bp):
ATTACTATTTATAAACCCTATGCTTTGCCCTACCTAGCTGTCTATTACTCTCCCATGGAATGGAA
GATCTTTTGGTGT
Found at i:13774126 original size:162 final size:163
Alignment explanation
Indices: 13773858--13774184 Score: 559
Period size: 162 Copynumber: 2.0 Consensus size: 163
13773848 TTATTTTTCC
* * *
13773858 TATTCTTGTTTTGTTTCTATTATTTACGCCAACTGTTCTATAAGAACACAATAGAAAGATCAATA
1 TATTCTTGTTTTGTTACGATTATTTACACCAACTGTTCTATAAGAACACAATAGAAAGATCAATA
*
13773923 GAATAACGAAGTAAAACTCTTTGTGGTTTTACCTTCAAAGTTTCTGTCTTCTACCTCTTTTAGAG
66 GAATAACGAAGTAAAACTCTTCGTGGTTTTACCTTCAAAGTTTCTGTCTTCTACCTCTTTTAGAG
*
13773988 TTGGCTTTGTGTAAC-TCAGTGTTGTTAGGGGTG
131 TTGGCTTTGTGTAACAT-AGTGTTGTCAGGGGTG
* *
13774021 TATTCTTGTTTTGTTACGATTATTTACACCTACTGTTCTAT-ATAACACAATAGAAAGATCAATA
1 TATTCTTGTTTTGTTACGATTATTTACACCAACTGTTCTATAAGAACACAATAGAAAGATCAATA
*
13774085 GAATAACGAAGTAAAACTCTTCGTGGTTTTACCTTCAAAGTTTCTGTCTTTTACCTCTTTTAGAG
66 GAATAACGAAGTAAAACTCTTCGTGGTTTTACCTTCAAAGTTTCTGTCTTCTACCTCTTTTAGAG
13774150 TTGGCTTTGTGTAACATAGTGTTGTCAGGGGTG
131 TTGGCTTTGTGTAACATAGTGTTGTCAGGGGTG
13774183 TA
1 TA
13774185 AGGCGCAAAA
Statistics
Matches: 155, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
162 117 0.75
163 38 0.25
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.40
Consensus pattern (163 bp):
TATTCTTGTTTTGTTACGATTATTTACACCAACTGTTCTATAAGAACACAATAGAAAGATCAATA
GAATAACGAAGTAAAACTCTTCGTGGTTTTACCTTCAAAGTTTCTGTCTTCTACCTCTTTTAGAG
TTGGCTTTGTGTAACATAGTGTTGTCAGGGGTG
Found at i:13783932 original size:16 final size:16
Alignment explanation
Indices: 13783911--13783942 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
13783901 AATTAATTTA
13783911 AATTAAATAATTTTCT
1 AATTAAATAATTTTCT
13783927 AATTAAATAATTTTCT
1 AATTAAATAATTTTCT
13783943 CAATCCAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTAAATAATTTTCT
Found at i:13784617 original size:20 final size:20
Alignment explanation
Indices: 13784592--13784633 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
13784582 TTGTTAATGA
*
13784592 AAAATTAATTTAATTTAATT
1 AAAATTAAGTTAATTTAATT
13784612 AAAATTAAGTTAATTTAATT
1 AAAATTAAGTTAATTTAATT
13784632 AA
1 AA
13784634 GTAATTAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
AAAATTAAGTTAATTTAATT
Found at i:13787969 original size:23 final size:23
Alignment explanation
Indices: 13787939--13787984 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
13787929 ACCGCCAAGA
13787939 TCTGAAATGAAATCACTTCATTT
1 TCTGAAATGAAATCACTTCATTT
13787962 TCTGAAATGAAATCACTTCATTT
1 TCTGAAATGAAATCACTTCATTT
13787985 CAGCAACTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.09, T:0.39
Consensus pattern (23 bp):
TCTGAAATGAAATCACTTCATTT
Found at i:13792543 original size:11 final size:11
Alignment explanation
Indices: 13792513--13792545 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
13792503 TTTTGCCTAA
13792513 AATATGAATTG
1 AATATGAATTG
*
13792524 GAT-TGAATTG
1 AATATGAATTG
13792534 AATATGAATTG
1 AATATGAATTG
13792545 A
1 A
13792546 TGTTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.36
Consensus pattern (11 bp):
AATATGAATTG
Found at i:13792928 original size:25 final size:24
Alignment explanation
Indices: 13792890--13792937 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
13792880 TTTTCCCTCT
** *
13792890 CGAGCTTCTTGTTATATGGTTCTTA
1 CGAGCTTCACGTTA-ATAGTTCTTA
13792915 CGAGCTTCACGTTAATAGTTCTT
1 CGAGCTTCACGTTAATAGTTCTT
13792938 TGAAGCATCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (24 bp):
CGAGCTTCACGTTAATAGTTCTTA
Found at i:13793178 original size:25 final size:25
Alignment explanation
Indices: 13793150--13793207 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
13793140 TATGATATTT
**
13793150 CCGTTATACAGCCCGGATAAGCTTC
1 CCGTTATACAGCCCACATAAGCTTC
* * * *
13793175 CCGTTACATAGCTCACATGAGCTTC
1 CCGTTATACAGCCCACATAAGCTTC
13793200 CCGTTATA
1 CCGTTATA
13793208 TGGCTCGAGA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (25 bp):
CCGTTATACAGCCCACATAAGCTTC
Found at i:13801407 original size:21 final size:18
Alignment explanation
Indices: 13801362--13801409 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 18
13801352 GGTAACAACC
*
13801362 ATTCAATTTACAATTATA
1 ATTCAATTCACAATTATA
13801380 A-TCAATTCACAATTTATCA
1 ATTCAATTCACAA-TTAT-A
13801399 TATTCAATTCA
1 -ATTCAATTCA
13801410 TTAATTAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 10 0.40
18 5 0.20
19 1 0.04
20 1 0.04
21 8 0.32
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTCAATTCACAATTATA
Found at i:13805504 original size:26 final size:26
Alignment explanation
Indices: 13805462--13805517 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
13805452 AAAATATTTT
13805462 TTATATTTTAAATAAAAACAAAAAAA
1 TTATATTTTAAATAAAAACAAAAAAA
* * *
13805488 TTATAATTTTTAA-AAAAATAAAAAAT
1 TTAT-ATTTTAAATAAAAACAAAAAAA
13805514 TTAT
1 TTAT
13805518 GAAAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (26 bp):
TTATATTTTAAATAAAAACAAAAAAA
Found at i:13805516 original size:17 final size:18
Alignment explanation
Indices: 13805496--13805529 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13805486 AATTATAATT
13805496 TTTA-AAAAAATAAAAAA
1 TTTATAAAAAATAAAAAA
*
13805513 TTTATGAAAAATAAAAA
1 TTTATAAAAAATAAAAA
13805530 CTGTTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
TTTATAAAAAATAAAAAA
Found at i:13805540 original size:18 final size:17
Alignment explanation
Indices: 13805496--13805545 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
13805486 AATTATAATT
*
13805496 TTTAAAAAAATAAAAAA
1 TTTATAAAAATAAAAAA
*
13805513 TTTATGAAAAATAAAAAC
1 TTTAT-AAAAATAAAAAA
13805531 TGTT-TAAAAATAAAA
1 T-TTATAAAAATAAAA
13805546 GAAAAATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 14 0.48
18 13 0.45
19 2 0.07
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (17 bp):
TTTATAAAAATAAAAAA
Found at i:13806058 original size:16 final size:16
Alignment explanation
Indices: 13806039--13806085 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
13806029 CATATATTTG
13806039 ATTTTTTTAAAATATA
1 ATTTTTTTAAAATATA
***
13806055 ATTTTTTTATTTTAT-
1 ATTTTTTTAAAATATA
*
13806070 GTTTTTTTAAAATATA
1 ATTTTTTTAAAATATA
13806086 TATAAAAAAT
Statistics
Matches: 23, Mismatches: 7, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (16 bp):
ATTTTTTTAAAATATA
Found at i:13806287 original size:11 final size:12
Alignment explanation
Indices: 13806271--13806313 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 12
13806261 ATTGAACTGA
13806271 TTTTT-ATAATT
1 TTTTTAATAATT
13806282 TTTTTAATAATTT
1 TTTTTAATAA-TT
13806295 TATTTTAATAATT
1 T-TTTTAATAATT
*
13806308 TATTTA
1 TTTTTA
13806314 CTTTGAATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 5 0.18
12 8 0.29
13 6 0.21
14 9 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTTAATAATT
Found at i:13806302 original size:14 final size:13
Alignment explanation
Indices: 13806270--13806312 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
13806260 AATTGAACTG
*
13806270 ATTTTTATAATTT
1 ATTTTAATAATTT
13806283 -TTTTAATAATTTT
1 ATTTTAATAA-TTT
13806296 ATTTTAATAATTT
1 ATTTTAATAATTT
13806309 ATTT
1 ATTT
13806313 ACTTTGAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
12 8 0.30
13 10 0.37
14 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
ATTTTAATAATTT
Found at i:13815304 original size:18 final size:17
Alignment explanation
Indices: 13815266--13815304 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
13815256 CAGAGTTTTA
*
13815266 TTTTTAACTACAGTAAG
1 TTTTTAACTACAATAAG
*
13815283 TTTTTAGCTACAATAAG
1 TTTTTAACTACAATAAG
13815300 TTTTT
1 TTTTT
13815305 CTACACTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (17 bp):
TTTTTAACTACAATAAG
Found at i:13817504 original size:168 final size:167
Alignment explanation
Indices: 13817224--13817727 Score: 796
Period size: 168 Copynumber: 3.0 Consensus size: 167
13817214 CATAGGCCTA
* *
13817224 TCATTCCTAAATTTGAGGCAAATGAAGGTGGTGCTAAATACAAATTTATGATGATTAAATTTTGG
1 TCATTCCTAAATTTGAGGCAAATGAAGGTGGTGCTAAACACAAATTTATGATAATTAAATTTTGG
* * * * *
13817289 AAGTTTTTGGGATTTTTAAT-TCGAATGAGATTGGTAAAAAGTGAATCTTAATGATTATGTTTGG
66 ATGTTTTTGGGCTCTTTAATAT-GAATGAGATTGGTAAGAATTGAATCTTAATGATTATGTTTGG
13817353 GATCTCTTAGGGATTCTTTAATATGGTTGAGTTCTCATG
130 GATCTCTT-GGGATTCTTTAATATGGTTGAGTTCTCATG
*
13817392 TCATTCCTAAATTTGAGGCAAGTGAAGGTGGTGCTAAACACAAATTTATGATAATTAAATTTTGG
1 TCATTCCTAAATTTGAGGCAAATGAAGGTGGTGCTAAACACAAATTTATGATAATTAAATTTTGG
*
13817457 ATGTTTTTGGGCTCTTTAATATGAATGAGATTGGCAAGAATTGAATCTTAATGATT-TAGTTTGG
66 ATGTTTTTGGGCTCTTTAATATGAATGAGATTGGTAAGAATTGAATCTTAATGATTAT-GTTTGG
13817521 GATCTCTTGGGGATTCTTTAATATGGTTGAGTTCTCATG
130 GATCTCTT-GGGATTCTTTAATATGGTTGAGTTCTCATG
* *
13817560 TCATTCTTAAATTTGAGGCAAATGAAGGTGGTGCTAAACACAAATTTATTATAATTAAATTTTGG
1 TCATTCCTAAATTTGAGGCAAATGAAGGTGGTGCTAAACACAAATTTATGATAATTAAATTTTGG
* * *
13817625 ATGTTTTTGGTCTCTTTAATATGAATGAGATTGGTAAGAATTGAATCTTAATGATTAAGTTTGTG
66 ATGTTTTTGGGCTCTTTAATATGAATGAGATTGGTAAGAATTGAATCTTAATGATTATGTTTGGG
* **
13817690 ATCTCTTGGAGATTCTTTAATGTTTTTGAGTTCTCATG
131 ATCTCTTGG-GATTCTTTAATATGGTTGAGTTCTCATG
13817728 ATTCATTTTG
Statistics
Matches: 312, Mismatches: 20, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
167 3 0.01
168 308 0.99
169 1 0.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (167 bp):
TCATTCCTAAATTTGAGGCAAATGAAGGTGGTGCTAAACACAAATTTATGATAATTAAATTTTGG
ATGTTTTTGGGCTCTTTAATATGAATGAGATTGGTAAGAATTGAATCTTAATGATTATGTTTGGG
ATCTCTTGGGATTCTTTAATATGGTTGAGTTCTCATG
Found at i:13818144 original size:15 final size:16
Alignment explanation
Indices: 13818124--13818156 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
13818114 GAAATATTTC
13818124 TTTTAATTCGG-TCGG
1 TTTTAATTCGGTTCGG
13818139 TTTTAATTCGGTTCGG
1 TTTTAATTCGGTTCGG
13818155 TT
1 TT
13818157 AACTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (16 bp):
TTTTAATTCGGTTCGG
Found at i:13830078 original size:97 final size:97
Alignment explanation
Indices: 13829909--13830104 Score: 338
Period size: 97 Copynumber: 2.0 Consensus size: 97
13829899 CCCATTTCCA
*
13829909 TTTTATTTTCCCGATTCTTGTTTTGTTGCTATTATTTACACCAACTGTTCTATAATAACACAATA
1 TTTTATTTTCCCGATTCTTGTTTTGTTGCTATTATTTACACCAACTGTTCTATAATAAAACAATA
13829974 GAAAGATCAATAGAATAACGAAGTAAAACTCT
66 GAAAGATCAATAGAATAACGAAGTAAAACTCT
* * * *
13830006 TTTTATTTTTCCTATTCTTGTTTTGTTGTTATTATTTACACTAACTGTTCTATAATAAAACAATA
1 TTTTATTTTCCCGATTCTTGTTTTGTTGCTATTATTTACACCAACTGTTCTATAATAAAACAATA
*
13830071 GACAGATCAATAGAATAACGAAGTAAAACTCT
66 GAAAGATCAATAGAATAACGAAGTAAAACTCT
13830103 TT
1 TT
13830105 GTGGTTTTAC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
97 93 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.41
Consensus pattern (97 bp):
TTTTATTTTCCCGATTCTTGTTTTGTTGCTATTATTTACACCAACTGTTCTATAATAAAACAATA
GAAAGATCAATAGAATAACGAAGTAAAACTCT
Found at i:13833969 original size:140 final size:141
Alignment explanation
Indices: 13833700--13833983 Score: 491
Period size: 140 Copynumber: 2.0 Consensus size: 141
13833690 CTATTTTATT
*
13833700 TATTAGTTGGTTTTGGAATTGATGTTAACAATAAACATGAGAACAATCCTAAATAGATTTTTTTT
1 TATTAGTTGGTTTTGGAATTGATGTTAACAATAAACATGAGAACAATCCTAAATAGATTTTCTTT
* * *
13833765 TAGGGTTTGCTTAAATGGATTTTTTGAAGCATCCTACCTAAAACCAATTGGTAATAGGTGGTGAG
66 TAGGGTTTGCTTAAATGGATTTTGTGAACCATCCTACCTAAAACCAATTGGTAATAGGTAGTGAG
13833830 T-TCGACTCTAA
131 TCT-GACTCTAA
*
13833841 TATTAGTTGGTTTTGGAATTGATGTTAACAATAAACATGAGAACAATCCTAACTAGA-TTTCTTT
1 TATTAGTTGGTTTTGGAATTGATGTTAACAATAAACATGAGAACAATCCTAAATAGATTTTCTTT
*
13833905 TAGGGTTTGCTTAAATGGATTTTGTGAACCATCCTACCTAAAACTAATTGGTAATAGGTAGTGAG
66 TAGGGTTTGCTTAAATGGATTTTGTGAACCATCCTACCTAAAACCAATTGGTAATAGGTAGTGAG
13833970 TCTGACTCTAA
131 TCTGACTCTAA
13833981 TAT
1 TAT
13833984 AAGGCCACAA
Statistics
Matches: 136, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
140 79 0.58
141 57 0.42
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (141 bp):
TATTAGTTGGTTTTGGAATTGATGTTAACAATAAACATGAGAACAATCCTAAATAGATTTTCTTT
TAGGGTTTGCTTAAATGGATTTTGTGAACCATCCTACCTAAAACCAATTGGTAATAGGTAGTGAG
TCTGACTCTAA
Found at i:13839123 original size:185 final size:186
Alignment explanation
Indices: 13838806--13839169 Score: 516
Period size: 185 Copynumber: 2.0 Consensus size: 186
13838796 AGACTAATAT
*
13838806 TTTCTTCTTTAATAGTGTTGATGATGCTTTAATAGATTTGATCAATGGTCTTCTTAGATTTCAAA
1 TTTCTTCTTTAATAGTGTTGATGATGCTTTAAGAGATTTGATCAATGGTCTTCTTAGATTTCAAA
* * *
13838871 GAATGCAAAATCTTAGGACTTACCTAGGAGTGCCTCTTTTTCATGAAAAGGTCACTGACACCACT
66 GAATGCAAAATCTTAGGACTTACCTAGGAGTGCCTCTTTTTCATGAAAAGGCCACTAACAACACT
* * *
13838936 TTGCAATTTGTAGCGGAAAAGGTTAGCAACAAGCTACAAAGTTGGGATGATATGGA
131 TTGCAATTTGTAGCGGAAAAAGTCAGCAACAAACTACAAAGTTGGGATGATATGGA
* * *
13838992 TTTCTTCTTTAGTAGTGTTGAT-ATGCTTTAGGATATTTGATCAATGGTCTTCTT-GTATTTCAA
1 TTTCTTCTTTAATAGTGTTGATGATGCTTTAAGAGATTTGATCAATGGTCTTCTTAG-ATTTCAA
* * * * ** *
13839055 AGAGTGTAGAATCTTGGGACTTGTCTGGGAGTGCCTCTTTTTCATGAAAAGGCCACTAACAACAC
65 AGAATGCAAAATCTTAGGACTTACCTAGGAGTGCCTCTTTTTCATGAAAAGGCCACTAACAACAC
* * * *
13839120 TTTGCAATTTTTGGTGGAAAAAGTCCGCAACAAACTACAAAGTTGGGATG
130 TTTGCAATTTGTAGCGGAAAAAGTCAGCAACAAACTACAAAGTTGGGATG
13839170 CCATGCAATT
Statistics
Matches: 156, Mismatches: 21, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
184 1 0.01
185 134 0.86
186 21 0.13
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (186 bp):
TTTCTTCTTTAATAGTGTTGATGATGCTTTAAGAGATTTGATCAATGGTCTTCTTAGATTTCAAA
GAATGCAAAATCTTAGGACTTACCTAGGAGTGCCTCTTTTTCATGAAAAGGCCACTAACAACACT
TTGCAATTTGTAGCGGAAAAAGTCAGCAACAAACTACAAAGTTGGGATGATATGGA
Found at i:13845451 original size:51 final size:51
Alignment explanation
Indices: 13845339--13845454 Score: 124
Period size: 51 Copynumber: 2.3 Consensus size: 51
13845329 GATCAATGCT
* * ** ***
13845339 ATTCGGTACACATAGTAGCCTACACATAGTACTGCACATGTGACCATTTCC
1 ATTCGGTACACATAATAGCCTACACATAGTACTACACACATGACCAAGGCC
* ** * *
13845390 ATCCAATACACGTAATAGCCTGCACATAGTACTACACACATGACCAAGGCC
1 ATTCGGTACACATAATAGCCTACACATAGTACTACACACATGACCAAGGCC
13845441 ATTCGGTACACATA
1 ATTCGGTACACATA
13845455 GTACTACACA
Statistics
Matches: 49, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (51 bp):
ATTCGGTACACATAATAGCCTACACATAGTACTACACACATGACCAAGGCC
Found at i:13845508 original size:88 final size:88
Alignment explanation
Indices: 13845359--13845525 Score: 264
Period size: 88 Copynumber: 1.9 Consensus size: 88
13845349 CATAGTAGCC
* *
13845359 TACACATAGTACTGCACATGTGACCATTTCCATCCAATACACGTAATAGCCTGCACATAGTACTA
1 TACACATAGTACTACACATGTGACCATTTCCATCCAATACACGTAATAGCCTACACATAGTACTA
13845424 CACACATGACCAAGGCCATTCGG
66 CACACATGACCAAGGCCATTCGG
* *
13845447 TACACATAGTACTACACATGTGACCATTAT-CATCCGATACACGTAGTAGCCTACACATAGTACT
1 TACACATAGTACTACACATGTGACCATT-TCCATCCAATACACGTAATAGCCTACACATAGTACT
* *
13845511 ACACACGTGATCAAG
65 ACACACATGACCAAG
13845526 CTATCTCATT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
88 71 0.99
89 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.23
Consensus pattern (88 bp):
TACACATAGTACTACACATGTGACCATTTCCATCCAATACACGTAATAGCCTACACATAGTACTA
CACACATGACCAAGGCCATTCGG
Found at i:13846636 original size:24 final size:24
Alignment explanation
Indices: 13846604--13846649 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
13846594 GCTCAAACGT
13846604 CGAAA-TTTTCGAATGAAATTTTCA
1 CGAAATTTTTC-AATGAAATTTTCA
* *
13846628 CGAACTTTTTCCATGAAATTTT
1 CGAAATTTTTCAATGAAATTTT
13846650 AGACATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.41
Consensus pattern (24 bp):
CGAAATTTTTCAATGAAATTTTCA
Found at i:13847040 original size:71 final size:72
Alignment explanation
Indices: 13846923--13847062 Score: 212
Period size: 71 Copynumber: 2.0 Consensus size: 72
13846913 GATGTATTCA
* *
13846923 TGGATGATTTCTCAGTTTACAGAGACTCTTTTTAAGAATGCCTGGGTAACCTTGAAAAA-GTTCT
1 TGGATGATTTCTCAGTTTACAGAGACTATTTTCAAGAATGCCTGGGTAACCTTGAAAAATGTTCT
13846987 AAAAATT
66 AAAAATT
* * *
13846994 TGGATG-TTTGCTCAGTTTACGGAGACTATTTTCAAGAATGCTTGGGTAACCTTGAAAAATTTTC
1 TGGATGATTT-CTCAGTTTACAGAGACTATTTTCAAGAATGCCTGGGTAACCTTGAAAAATGTTC
13847058 TAAAA
65 TAAAA
13847063 GGTGTGAAGA
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
70 3 0.05
71 51 0.82
72 8 0.13
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (72 bp):
TGGATGATTTCTCAGTTTACAGAGACTATTTTCAAGAATGCCTGGGTAACCTTGAAAAATGTTCT
AAAAATT
Found at i:13855047 original size:23 final size:23
Alignment explanation
Indices: 13855021--13855068 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
13855011 CTAGTTTATA
13855021 TTTTGACTTTTATTTGATATAGG
1 TTTTGACTTTTATTTGATATAGG
13855044 TTTTGACTTTTATTTGATATAGG
1 TTTTGACTTTTATTTGATATAGG
13855067 TT
1 TT
13855069 CATCTCTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.04, G:0.17, T:0.58
Consensus pattern (23 bp):
TTTTGACTTTTATTTGATATAGG
Found at i:13863512 original size:23 final size:23
Alignment explanation
Indices: 13863482--13863528 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
13863472 TAGACATGCA
13863482 TCGTCAAAGAAGAATTTTTGATT
1 TCGTCAAAGAAGAATTTTTGATT
13863505 TCGTCAAAGAAGAATTTTTGATT
1 TCGTCAAAGAAGAATTTTTGATT
13863528 T
1 T
13863529 TGTTCCAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (23 bp):
TCGTCAAAGAAGAATTTTTGATT
Found at i:13884556 original size:50 final size:50
Alignment explanation
Indices: 13884455--13884734 Score: 294
Period size: 50 Copynumber: 5.5 Consensus size: 50
13884445 AGAGATCTCG
*
13884455 TGTAAGACCATGTCTGGGACATGGTATTGGCATCCTTGAGATCATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGGTCCCA
* *
13884511 TGTAAGACCGTGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * * * *
13884561 TGTAAGACCAAGTTTGGGACATGGCGTTGACACCGAGATGAAAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * **
13884611 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAATTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * * **
13884661 TGTAAGACCATATCTGGGATATGGCATTGGCA--GTACATGAAACATCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGGTCCCA
*
13884710 TGTAAGACCATGTTTGGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
13884735 TTTTGCATAT
Statistics
Matches: 192, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.01
49 33 0.17
50 124 0.65
53 3 0.02
55 2 0.01
56 29 0.15
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
Found at i:13889444 original size:26 final size:26
Alignment explanation
Indices: 13889415--13889465 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
13889405 AAGAAAAATC
13889415 AAGAAAAAGT-CAAAAGTAAAAACAAG
1 AAGAAAAAGTACAAAA-TAAAAACAAG
* *
13889441 AAGACAAAGTACAAAATAGAAACAA
1 AAGAAAAAGTACAAAATAAAAACAA
13889466 AAACACTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.69, C:0.10, G:0.14, T:0.08
Consensus pattern (26 bp):
AAGAAAAAGTACAAAATAAAAACAAG
Found at i:13894598 original size:21 final size:21
Alignment explanation
Indices: 13894574--13894614 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
13894564 CTTTTCAACC
13894574 CTTATGGGTTTCTATTTAGCA
1 CTTATGGGTTTCTATTTAGCA
*
13894595 CTTATGTGTTTCTATTTAGC
1 CTTATGGGTTTCTATTTAGC
13894615 CTTCGGGCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.17, C:0.15, G:0.17, T:0.51
Consensus pattern (21 bp):
CTTATGGGTTTCTATTTAGCA
Found at i:13896201 original size:12 final size:13
Alignment explanation
Indices: 13896184--13896213 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
13896174 AGGTTTCTCA
13896184 AAATGGAAAT-AG
1 AAATGGAAATGAG
13896196 AAATGGAAATGAG
1 AAATGGAAATGAG
13896209 AAATG
1 AAATG
13896214 ATACATTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.17
Consensus pattern (13 bp):
AAATGGAAATGAG
Found at i:13898754 original size:26 final size:26
Alignment explanation
Indices: 13898707--13898764 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 26
13898697 TGGCTATTCG
**
13898707 GAGC-TCCTAATTAAAGGCTCTTTGT
1 GAGCTTCCTAATTAAAAACTCTTTGT
*
13898732 GAGCTTCCTAATTAAAAATTCTTTGT
1 GAGCTTCCTAATTAAAAACTCTTTGT
*
13898758 GAACTTC
1 GAGCTTC
13898765 TTGATTATGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 4 0.14
26 24 0.86
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (26 bp):
GAGCTTCCTAATTAAAAACTCTTTGT
Found at i:13900905 original size:38 final size:38
Alignment explanation
Indices: 13900858--13900931 Score: 89
Period size: 38 Copynumber: 1.9 Consensus size: 38
13900848 CAAGTAAATA
*
13900858 AACAAATAAA-AACTAAAACAT-TTTAAAAAATAATAATG
1 AACAAATAAATAAATAAAA-ATATTT-AAAAATAATAATG
* *
13900896 AACATATAAATAAATAAAAATATTTAATAATAATAA
1 AACAAATAAATAAATAAAAATATTTAAAAATAATAA
13900932 AATAAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
38 21 0.68
39 10 0.32
ACGTcount: A:0.66, C:0.05, G:0.01, T:0.27
Consensus pattern (38 bp):
AACAAATAAATAAATAAAAATATTTAAAAATAATAATG
Found at i:13900945 original size:38 final size:37
Alignment explanation
Indices: 13900853--13900945 Score: 84
Period size: 39 Copynumber: 2.4 Consensus size: 37
13900843 AATAACAAGT
*
13900853 AAATAAACAAATAA-AAACTAAAACATTTTAAAAAATA
1 AAATAAATAAA-AATAAACTAAAACATTTTAAAAAATA
*
13900890 ATAATGAACATATAAATAAA-TAAAA-ATATTTAATAATAATA
1 A-AAT-AA-ATAAAAATAAACTAAAACAT-TTTAA-AA-AATA
13900931 AAATAAATAAAAATA
1 AAATAAATAAAAATA
13900946 TAGAAACGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
37 1 0.02
38 13 0.28
39 16 0.35
40 11 0.24
41 5 0.11
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (37 bp):
AAATAAATAAAAATAAACTAAAACATTTTAAAAAATA
Found at i:13903230 original size:11 final size:11
Alignment explanation
Indices: 13903194--13903274 Score: 66
Period size: 11 Copynumber: 7.6 Consensus size: 11
13903184 ATAAACACCA
13903194 AAAAATATTTT
1 AAAAATATTTT
**
13903205 AAAAA-ATTAAA
1 AAAAATATT-TT
13903216 AAAAATATTTT
1 AAAAATATTTT
13903227 AAAAATATTTT
1 AAAAATATTTT
*
13903238 -AAAATA---A
1 AAAAATATTTT
13903245 AAAAAGTATTTT
1 AAAAA-TATTTT
13903257 -AAAATATTTTT
1 AAAAATA-TTTT
13903268 AAAAATA
1 AAAAATA
13903275 AAAAATATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 17
0.71 0.08 0.22
Matches are distributed among these distances:
8 4 0.07
9 2 0.04
10 11 0.20
11 29 0.53
12 9 0.16
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:13903248 original size:30 final size:31
Alignment explanation
Indices: 13903194--13903289 Score: 124
Period size: 30 Copynumber: 3.0 Consensus size: 31
13903184 ATAAACACCA
13903194 AAAAATATTTTAAAAAATTAAAAAAAATATTTT
1 AAAAATATTTT-AAAAA-TAAAAAAAATATTTT
*
13903227 AAAAATATTTT-AAAATAAAAAAAGTATTTT
1 AAAAATATTTTAAAAATAAAAAAAATATTTT
*
13903257 -AAAATATTTTTAAAAATAAAAAATATATCTTT
1 AAAAATA-TTTTAAAAATAAAAAAAATAT-TTT
13903289 A
1 A
13903290 TTATATTCGG
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
29 6 0.11
30 18 0.32
31 18 0.32
32 3 0.05
33 11 0.20
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.38
Consensus pattern (31 bp):
AAAAATATTTTAAAAATAAAAAAAATATTTT
Found at i:13903254 original size:19 final size:18
Alignment explanation
Indices: 13903227--13903262 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
13903217 AAAATATTTT
13903227 AAAAATATTTTAAAATAA
1 AAAAATATTTTAAAATAA
13903245 AAAAAGTATTTTAAAATA
1 AAAAA-TATTTTAAAATA
13903263 TTTTTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (18 bp):
AAAAATATTTTAAAATAA
Found at i:13909325 original size:45 final size:44
Alignment explanation
Indices: 13909256--13909414 Score: 167
Period size: 45 Copynumber: 3.6 Consensus size: 44
13909246 TATACAGTAG
* * *
13909256 ATCAGCACACAGC-ACCACCCTTATAGTCAATAGCAACCGGTGAA
1 ATCAGCACATAGCAACCACCTTTATAATCAAT-GCAACCGGTGAA
* **
13909300 ATCAACACATAGCAACCACCTTTATAATCAATGGTACCTGGTGAA
1 ATCAGCACATAGCAACCACCTTTATAATCAATGCAACC-GGTGAA
* * * **
13909345 ATCAGCACATAGCAACCACCTATATAATCAATGGTACCCAATGAA
1 ATCAGCACATAGCAACCACCTTTATAATCAAT-GCAACCGGTGAA
* *
13909390 ATCAGCACATAGCAGCCACTTTTAT
1 ATCAGCACATAGCAACCACCTTTAT
13909415 TTTCATTAAT
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
44 15 0.16
45 78 0.81
46 3 0.03
ACGTcount: A:0.38, C:0.28, G:0.13, T:0.21
Consensus pattern (44 bp):
ATCAGCACATAGCAACCACCTTTATAATCAATGCAACCGGTGAA
Found at i:13909461 original size:45 final size:45
Alignment explanation
Indices: 13909296--13909466 Score: 139
Period size: 45 Copynumber: 3.8 Consensus size: 45
13909286 TAGCAACCGG
* * ** ** ***
13909296 TGAAATCAACACATAGCAACCACCTTTATAATCAATGGTACCTGG
1 TGAAATCAGCACATAGCAACCACCTATATTTTCAATAATACCCAA
** **
13909341 TGAAATCAGCACATAGCAACCACCTATATAATCAATGGTACCCAA
1 TGAAATCAGCACATAGCAACCACCTATATTTTCAATAATACCCAA
* * * * *
13909386 TGAAATCAGCACATAGCAGCCACTTTTATTTTCATTAATA-TCAA
1 TGAAATCAGCACATAGCAACCACCTATATTTTCAATAATACCCAA
*
13909430 -GTAGAATCAGCACATAGCAACCACCTATATTTCCAAT
1 TG-A-AATCAGCACATAGCAACCACCTATATTTTCAAT
13909467 GGTATCCGGT
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 100 0.95
ACGTcount: A:0.39, C:0.25, G:0.11, T:0.26
Consensus pattern (45 bp):
TGAAATCAGCACATAGCAACCACCTATATTTTCAATAATACCCAA
Found at i:13914234 original size:49 final size:50
Alignment explanation
Indices: 13914113--13914249 Score: 172
Period size: 49 Copynumber: 2.8 Consensus size: 50
13914103 GGGTAAAGAG
* * * *
13914113 ATCCCATGTAAGACCATGTCTGGGACATGGTATGGGCACCGATATGAGAAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAAGAGAAC
* *
13914164 -TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTACAAGA-AAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACG-ACAAGAGAAC
*
13914212 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13914250 TGTTATTATC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
48 4 0.05
49 38 0.51
50 33 0.44
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (50 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGACAAGAGAAC
Found at i:13916761 original size:40 final size:40
Alignment explanation
Indices: 13916717--13916799 Score: 121
Period size: 40 Copynumber: 2.1 Consensus size: 40
13916707 TATTGCATGC
* * * *
13916717 TTAGTATAATTATTTTTATTACTTTAAAAAATTAAAAAAA
1 TTAGTACAATTATGTTTATTACTTAAAAAAACTAAAAAAA
*
13916757 TTAGTACATTTATGTTTATTACTTAAAAAAACTAAAAAAA
1 TTAGTACAATTATGTTTATTACTTAAAAAAACTAAAAAAA
13916797 TTA
1 TTA
13916800 AAAATTTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.42
Consensus pattern (40 bp):
TTAGTACAATTATGTTTATTACTTAAAAAAACTAAAAAAA
Found at i:13917709 original size:24 final size:24
Alignment explanation
Indices: 13917673--13917744 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
13917663 CTCCCATTCC
*
13917673 TTATTATTATTAGTTTTTTTATAT
1 TTATTATTTTTAGTTTTTTTATAT
*
13917697 TTATTATTTTTAGTTGTTTTAT-T
1 TTATTATTTTTAGTTTTTTTATAT
** *
13917720 ATTATTAGATTTAG-TTTATTATAT
1 -TTATTATTTTTAGTTTTTTTATAT
13917744 T
1 T
13917745 CTTGTTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
23 8 0.20
24 32 0.80
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (24 bp):
TTATTATTTTTAGTTTTTTTATAT
Found at i:13920007 original size:16 final size:16
Alignment explanation
Indices: 13919986--13920017 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13919976 CTACCCAAGG
13919986 GTGAAGGCAGAAAATC
1 GTGAAGGCAGAAAATC
*
13920002 GTGAAGGTAGAAAATC
1 GTGAAGGCAGAAAATC
13920018 ATTTTAGGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.09, G:0.31, T:0.16
Consensus pattern (16 bp):
GTGAAGGCAGAAAATC
Found at i:13922274 original size:23 final size:24
Alignment explanation
Indices: 13922248--13922296 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 24
13922238 TTCCATTTCT
13922248 AAACCGATATTCA-ATTCAATTCC
1 AAACCGATATTCATATTCAATTCC
*
13922271 AAACCTATATTCATTATTCAATTCC
1 AAACCGATATTCA-TATTCAATTCC
13922296 A
1 A
13922297 CTTAGTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.52
25 11 0.48
ACGTcount: A:0.39, C:0.24, G:0.02, T:0.35
Consensus pattern (24 bp):
AAACCGATATTCATATTCAATTCC
Found at i:13922495 original size:51 final size:50
Alignment explanation
Indices: 13922440--13922623 Score: 217
Period size: 51 Copynumber: 3.6 Consensus size: 50
13922430 TCGGTTCACA
* *
13922440 TAGTAGTCTGCACATAGTACTACACATGTGACCATTACCATCTGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATCTGGTACACG
* * * * *
13922491 TAGTAGCCTGCACATAGTACTACACATGTGATCGAAACTATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-CCATACCATCTGGTACACG
* * * *
13922542 TAGTAGCCTACACATAGTATTACACATGTGACC-TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATACCA-TCTGGTACACG
* *
13922592 TAGTAGCCTGGACATAGTACTACACACGTGAC
1 TAGTAGCCTGCACATAGTACTACACATGTGAC
13922624 AATCACATTC
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
49 2 0.02
50 37 0.33
51 70 0.63
52 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATACCATCTGGTACACG
Found at i:13922616 original size:101 final size:101
Alignment explanation
Indices: 13922438--13922622 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 101
13922428 GTTCGGTTCA
* * *
13922438 CATAGTAGTCTGCACATAGTACTACACATGTGACCATTACCATCTGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTACACATAGTACTACACATGTGACCA-TACCATCCGATACACGTAGTAGCCTGCA
*
13922503 CATAGTACTACACATGTGATCGAAACTATCTGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCTGGTACG
* * * *
13922540 CATAGTAGCCTACACATAGTATTACACATGTGACC-TATCATTCCGGTACACGTAGTAGCCTGGA
1 CATAGTAGCCTACACATAGTACTACACATGTGACCATACCA-TCCGATACACGTAGTAGCCTGCA
13922604 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
13922623 CAATCACATT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 4 0.05
101 38 0.51
102 32 0.43
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGTGACCATACCATCCGATACACGTAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCTGGTACG
Found at i:13925139 original size:20 final size:18
Alignment explanation
Indices: 13925111--13925157 Score: 67
Period size: 20 Copynumber: 2.5 Consensus size: 18
13925101 TAAGATAAAG
*
13925111 AAATAACAAACTAAAAAA
1 AAATAACAAAATAAAAAA
13925129 ACAACTAACAAAATAAAAAA
1 A-AA-TAACAAAATAAAAAA
13925149 AAATAACAA
1 AAATAACAA
13925158 TGCATAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 7 0.27
19 4 0.15
20 15 0.58
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.11
Consensus pattern (18 bp):
AAATAACAAAATAAAAAA
Found at i:13936698 original size:25 final size:25
Alignment explanation
Indices: 13936641--13936698 Score: 59
Period size: 27 Copynumber: 2.3 Consensus size: 25
13936631 ATAAACAATT
*
13936641 TATTT-ATTAAATTTTTTTAATAAA
1 TATTTAATTAAATTTTTATAATAAA
13936665 -ATTAATAATTAAAGTTTTTATAA-AAA
1 TATT--TAATTAAA-TTTTTATAATAAA
13936691 TATTTAAT
1 TATTTAAT
13936699 AATGTTTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
23 3 0.11
25 5 0.18
26 9 0.32
27 11 0.39
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TATTTAATTAAATTTTTATAATAAA
Found at i:13942413 original size:24 final size:24
Alignment explanation
Indices: 13942368--13942413 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
13942358 TCCTCTTAGC
*
13942368 AAATAAACCTAATTTTATAAATAA
1 AAATAAACCAAATTTTATAAATAA
13942392 AAATAAAACCAAATTTTA-AAAT
1 AAAT-AAACCAAATTTTATAAAT
13942414 GTCCATAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (24 bp):
AAATAAACCAAATTTTATAAATAA
Found at i:13947751 original size:21 final size:21
Alignment explanation
Indices: 13947727--13947771 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
13947717 AATACAAAAC
13947727 ATAACC-AGATATTAACCAAGT
1 ATAACCGA-ATATTAACCAAGT
13947748 ATAACCGAATATTAACCAAGT
1 ATAACCGAATATTAACCAAGT
13947769 ATA
1 ATA
13947772 TTCACTATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.49, C:0.18, G:0.09, T:0.24
Consensus pattern (21 bp):
ATAACCGAATATTAACCAAGT
Found at i:13948546 original size:41 final size:41
Alignment explanation
Indices: 13948501--13948617 Score: 135
Period size: 41 Copynumber: 2.9 Consensus size: 41
13948491 AGCTTATTAA
* * * *
13948501 GATACACTGGCATAAAGTCTTCTAGGAACAGAGCCTGATAT
1 GATACACCGGCATAAAGCCTGCTAGGAACAAAGCCTGATAT
* * * *
13948542 GATACACCGGTACAAAGCCTGCTAGGCATAAAGCCTGATAT
1 GATACACCGGCATAAAGCCTGCTAGGAACAAAGCCTGATAT
* * *
13948583 GGTACACCGGCATGAAGCCTGCTAGGCACAAAGCC
1 GATACACCGGCATAAAGCCTGCTAGGAACAAAGCC
13948618 CGAATATCAC
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 63 1.00
ACGTcount: A:0.32, C:0.25, G:0.24, T:0.19
Consensus pattern (41 bp):
GATACACCGGCATAAAGCCTGCTAGGAACAAAGCCTGATAT
Found at i:13961979 original size:17 final size:16
Alignment explanation
Indices: 13961954--13961994 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
13961944 ATCACTAATA
13961954 CATAGTTCATTCTATCG
1 CATAGTTCATT-TATCG
*
13961971 CATATTTCATTTATCG
1 CATAGTTCATTTATCG
13961987 -A-AGTTCAT
1 CATAGTTCAT
13961995 AATTTAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 6 0.27
15 1 0.05
16 5 0.23
17 10 0.45
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.44
Consensus pattern (16 bp):
CATAGTTCATTTATCG
Found at i:13967293 original size:20 final size:19
Alignment explanation
Indices: 13967265--13967306 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
13967255 CTTATTTCGA
13967265 TTTTGTTTTTAAAATTTTC
1 TTTTGTTTTTAAAATTTTC
13967284 TTTTGTTTTTAAAATTTTC
1 TTTTGTTTTTAAAATTTTC
13967303 TTTT
1 TTTT
13967307 ATTCTACACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTGTTTTTAAAATTTTC
Found at i:13970807 original size:25 final size:25
Alignment explanation
Indices: 13970771--13970839 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 25
13970761 CGTTTTGACC
*
13970771 CACAGCTCGTGTGAGCATACCGATT
1 CACAGCTTGTGTGAGCATACCGATT
* *
13970796 CATAGCTTGTGTGAGCATATCGATT
1 CACAGCTTGTGTGAGCATACCGATT
13970821 CACAGCTTGTGTGAGCATA
1 CACAGCTTGTGTGAGCATA
13970840 AATGTATAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.29
Consensus pattern (25 bp):
CACAGCTTGTGTGAGCATACCGATT
Found at i:13971681 original size:10 final size:10
Alignment explanation
Indices: 13971668--13971697 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
13971658 TTTGGTACCC
*
13971668 TTTGATAAGT
1 TTTGGTAAGT
13971678 TTTGGTAAGT
1 TTTGGTAAGT
13971688 TTTGGTAAGT
1 TTTGGTAAGT
13971698 AAACTAATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (10 bp):
TTTGGTAAGT
Found at i:13982953 original size:11 final size:11
Alignment explanation
Indices: 13982937--13982961 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13982927 TAGTTTCTTC
13982937 ACTTGTATTAG
1 ACTTGTATTAG
13982948 ACTTGTATTAG
1 ACTTGTATTAG
13982959 ACT
1 ACT
13982962 CAACAATGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.12, G:0.16, T:0.44
Consensus pattern (11 bp):
ACTTGTATTAG
Found at i:13983362 original size:43 final size:43
Alignment explanation
Indices: 13983254--13983600 Score: 354
Period size: 43 Copynumber: 8.2 Consensus size: 43
13983244 ATGATATGTT
* * * * * *
13983254 TTTAGCGGCATTTTTGCGAGAAGCGTCGCTAAAGG--ATTGTTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCA-TGGTC
* * * *
13983296 TATAGCGGCATTTGTGATAAAAGCGCCGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
** * *
13983339 TTTAGTAGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
* * *
13983382 TTTAGCGGTGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
* * ** *
13983425 TTTAGTGTCGTTTGTG-GTAAAAGCGCCGCTAAAGAACATGATC
1 TTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAGGTCATGGTC
13983468 TTTAGCGGCGTTTGT-AGAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAGGTCATGGTC
* *
13983511 TTTAGCGGCGTTTGTGGGAAAGGCGCCGCTAAAGGTCA-----
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
* *
13983549 TATAGCGGCGTTTG-GGGAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAGGTCATGGTC
13983592 TTTAGCGGC
1 TTTAGCGGC
13983601 ATTTATTTCC
Statistics
Matches: 255, Mismatches: 39, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
37 3 0.01
38 32 0.13
42 30 0.12
43 188 0.74
44 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:13983575 original size:38 final size:38
Alignment explanation
Indices: 13983470--13983587 Score: 139
Period size: 38 Copynumber: 3.0 Consensus size: 38
13983460 ACATGATCTT
** *
13983470 TAGCGGCGTTTGTAGAAAAAGCGCCGCTAAAGGTCATGGTCTT
1 TAGCGGCGTTTGGGGAAAAAGCGCCGCTAAAGGTCA-----TA
*
13983513 TAGCGGCGTTTGTGGG-AAAGGCGCCGCTAAAGGTCATA
1 TAGCGGCGTTTG-GGGAAAAAGCGCCGCTAAAGGTCATA
13983551 TAGCGGCGTTTGGGGAAAAAGCGCCGCTAAAGGTCAT
1 TAGCGGCGTTTGGGGAAAAAGCGCCGCTAAAGGTCAT
13983588 GGTCTTTAGC
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
37 3 0.04
38 33 0.49
43 31 0.46
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.22
Consensus pattern (38 bp):
TAGCGGCGTTTGGGGAAAAAGCGCCGCTAAAGGTCATA
Found at i:13984233 original size:21 final size:21
Alignment explanation
Indices: 13984196--13984250 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
13984186 AATCATATCT
13984196 TCCAAGATTGC--ATATCATA
1 TCCAAGATTGCATATATCATA
13984215 TCCAAGATTGCATATATCATA
1 TCCAAGATTGCATATATCATA
*
13984236 TCTAAGATTGCATAT
1 TCCAAGATTGCATAT
13984251 CCTTGAAGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 11 0.33
21 22 0.67
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (21 bp):
TCCAAGATTGCATATATCATA
Found at i:13984763 original size:45 final size:45
Alignment explanation
Indices: 13984594--13984874 Score: 253
Period size: 44 Copynumber: 6.4 Consensus size: 45
13984584 ATAAGACTTG
**
13984594 TATCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGC
1 TATCTTCGATCTACTTCGCCACCAGTACAGGAAGACAAGATCTGC
* * * *
13984639 TACCTTTGATCTATTTCATGCCA--A-TACATGAAGACAAGATCTGC
1 TATCTTCGATCTACTTC--GCCACCAGTACAGGAAGACAAGATCTGC
* * * * *
13984683 TTTCTTTGATCTACTT---CACCAATACATGAAGACAAGATCTAC
1 TATCTTCGATCTACTTCGCCACCAGTACAGGAAGACAAGATCTGC
**
13984725 -ATTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGC
1 TA-TCTTCGATCTACTTCGCCACCAGTACAGGAAGACAAGATCTGC
*
13984770 TATCTTCGATCTACTTCATGCCA--A-TACATGAAGACAAGATCTGC
1 TATCTTCGATCTACTTC--GCCACCAGTACAGGAAGACAAGATCTGC
* * * *
13984814 TATCTAT-GATCTACTTC-ACGCCAATACATGAAGACAAGATCTGC
1 TATCT-TCGATCTACTTCGCCACCAGTACAGGAAGACAAGATCTGC
*
13984858 TTTCTTCGATCTACTTC
1 TATCTTCGATCTACTTC
13984875 ACGACAACCT
Statistics
Matches: 196, Mismatches: 23, Indels: 35
0.77 0.09 0.14
Matches are distributed among these distances:
39 2 0.01
41 2 0.01
42 32 0.16
43 2 0.01
44 96 0.49
45 53 0.27
46 1 0.01
47 8 0.04
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (45 bp):
TATCTTCGATCTACTTCGCCACCAGTACAGGAAGACAAGATCTGC
Found at i:13984830 original size:131 final size:132
Alignment explanation
Indices: 13984596--13984874 Score: 479
Period size: 131 Copynumber: 2.1 Consensus size: 132
13984586 AAGACTTGTA
* *
13984596 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTACCTTTGATCTATTTCATGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTACCTTCGATCTACTTCATGCC
* *
13984661 AATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCA-CCAATACATGAAGACAAGATCTAC
66 AATACATGAAGACAAGATCTGCTATCTATGATCTACTTCACCCAATACATGAAGACAAGATCTAC
13984725 AT
131 AT
*
13984727 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
1 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTACCTTCGATCTACTTCATGCC
*
13984792 AATACATGAAGACAAGATCTGCTATCTATGATCTACTTCACGCCAATACATGAAGACAAGATCTG
66 AATACATGAAGACAAGATCTGCTATCTATGATCTACTTCAC-CCAATACATGAAGACAAGATCTA
*
13984857 CTT
130 CAT
13984860 TCTTCGATCTACTTC
1 TCTTCGATCTACTTC
13984875 ACGACAACCT
Statistics
Matches: 139, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
131 100 0.72
133 39 0.28
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (132 bp):
TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTACCTTCGATCTACTTCATGCC
AATACATGAAGACAAGATCTGCTATCTATGATCTACTTCACCCAATACATGAAGACAAGATCTAC
AT
Found at i:13984876 original size:44 final size:44
Alignment explanation
Indices: 13984624--13984877 Score: 318
Period size: 44 Copynumber: 5.8 Consensus size: 44
13984614 ACCAGTATGG
* * * *
13984624 GAAGACAAGATCTGCTACCTTTGATCTATTTCATGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* *
13984668 GAAGACAAGATCTGCTTTCTTTGATCTACTTCA--CCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* * * * ***
13984710 GAAGACAAGATCTAC-ATTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTA-TCTTCGATCTACTTC-ACGCCAATACAT
*
13984755 GAAGACAAGATCTGCTATCTTCGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
13984799 GAAGACAAGATCTGCTATCTAT-GATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCT-TCGATCTACTTCACGCCAATACAT
*
13984843 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACG
13984878 ACAACCTAGG
Statistics
Matches: 182, Mismatches: 21, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
42 37 0.20
43 1 0.01
44 108 0.59
45 35 0.19
46 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
Found at i:13984905 original size:131 final size:131
Alignment explanation
Indices: 13984596--13984950 Score: 421
Period size: 131 Copynumber: 2.7 Consensus size: 131
13984586 AAGACTTGTA
* * * * * * *
13984596 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTACCTTTGATCTATTTCATGCC
1 TCTTCGATCTACTTCACCACAACTATGGGAAGACAAGACCTGCTATCTTCGATCTACTTCATGCC
* *
13984661 AATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCACCAATACATGAAGACAAGATCTACA
66 AATACATGAAGACAAGATCTGCTATCTATGATCTACTTCACCAATACATGAAGACAAGATCTACA
13984726 T
131 T
* * * *
13984727 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATCTTCGATCTACTTCATGCC
1 TCTTCGATCTACTTCACCACAACTATGGGAAGACAAGACCTGCTATCTTCGATCTACTTCATGCC
*
13984792 AATACATGAAGACAAGATCTGCTATCTATGATCTACTTCACGCCAATACATGAAGACAAGATCTG
66 AATACATGAAGACAAGATCTGCTATCTATGATCTACTTCA--CCAATACATGAAGACAAGATCTA
*
13984857 CTT
129 CAT
* * * * *
13984860 TCTTCGATCTACTTCACGACAACCTA-GGG-AGGCAAG-CCTGGTATCTTTGATCTGCTTCACTG
1 TCTTCGATCTACTTCACCACAA-CTATGGGAAGACAAGACCTGCTATCTTCGATCTACTTCA-TG
* ** *
13984922 TCGGTACAGGAATG-CAAGATCTGCTATCT
64 CCAATACATGAA-GACAAGATCTGCTATCT
13984951 TCAACCTGCT
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
131 119 0.60
132 31 0.16
133 47 0.24
134 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (131 bp):
TCTTCGATCTACTTCACCACAACTATGGGAAGACAAGACCTGCTATCTTCGATCTACTTCATGCC
AATACATGAAGACAAGATCTGCTATCTATGATCTACTTCACCAATACATGAAGACAAGATCTACA
T
Found at i:13985776 original size:88 final size:88
Alignment explanation
Indices: 13984838--13985754 Score: 1350
Period size: 88 Copynumber: 10.4 Consensus size: 88
13984828 TTCACGCCAA
* * * * * * * * * *
13984838 TACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGACAACCTAGGGAGGCAAGCCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
*
13984903 TCTTTGATCTGCTTCACTGTCGG
66 TCTTCGATCTGCTTCACTGTCGG
*
13984926 TACAGGAATGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
*
13984991 TCTTCGATCTACTTCACTGTCGG
66 TCTTCGATCTGCTTCACTGTCGG
*
13985014 TATAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
13985079 TCTTCGATCTGCTTCACTGTCGG
66 TCTTCGATCTGCTTCACTGTCGG
* *
13985102 TACAGGAAGACAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
*
13985167 TCTTCGATCTGCTTCACTGTCAG
66 TCTTCGATCTGCTTCACTGTCGG
* ** *
13985190 TACAGGAAGGCAATATCTGCTATCTTCAACCTGCAGCACTACAACCCAGGGAGGCAAGGTTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
13985255 TCTTCGATCTGCTTCACTGTCGG
66 TCTTCGATCTGCTTCACTGTCGG
* * * *
13985278 TACAAGAAGGCAAGATCTTCTATCTTCAACCTACTCCACTACGACCCAGGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
*
13985343 TCTTCGATCTGCTTCACTGTCAG
66 TCTTCGATCTGCTTCACTGTCGG
* * * *
13985366 TACTGGAAGGCAAGATCTGCTATCTTCAACATGCTCTACTACAACCCAGGGAGGCATGGCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
* * *
13985431 TCTTCAATCTGCTTCGCTGTCGA
66 TCTTCGATCTGCTTCACTGTCGG
*
13985454 TGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
*
13985519 TCTTCGATCTGCTTCACTGTCGA
66 TCTTCGATCTGCTTCACTGTCGG
* * * * *
13985542 TGCAAGAAGGTAAGATCTACTATCTTCAACCTGCTCCACTACAACCCGGGGAGGCAAGGCTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
* *
13985607 TCTTCGATCTGCTTCGCTGTCGA
66 TCTTCGATCTGCTTCACTGTCGG
* * * * *
13985630 TGCGGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCTAGGGAAGCAAGGTTGGTA
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
* *
13985695 TCTTCGATCTGCTTC-GTCGTCAG
66 TCTTCGATCTGCTTCACT-GTCGG
* * *
13985718 TACAGGAAGGTAAGATCTGTTATTTTCAACCTGCTCC
1 TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCC
13985755 GCTGCAAACC
Statistics
Matches: 752, Mismatches: 76, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
87 1 0.00
88 751 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (88 bp):
TACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTA
TCTTCGATCTGCTTCACTGTCGG
Found at i:13992705 original size:21 final size:21
Alignment explanation
Indices: 13992667--13992721 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
13992657 AATCATATCT
*
13992667 TCCAAGATTGC--GTATCATA
1 TCCAAGATTGCATATATCATA
13992686 TCCAAGATTGCATATATCATA
1 TCCAAGATTGCATATATCATA
*
13992707 TCTAAGATTGCATAT
1 TCCAAGATTGCATAT
13992722 CCTTGAAGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.34
21 21 0.66
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (21 bp):
TCCAAGATTGCATATATCATA
Found at i:13993319 original size:49 final size:50
Alignment explanation
Indices: 13993259--13993406 Score: 156
Period size: 49 Copynumber: 2.9 Consensus size: 50
13993249 ACATTGGAGT
* *
13993259 TCTCATATCGGTGTCC-ATGCCATGTCCTAGACATGGTCTTAC-GGGGACC
1 TCTCATATCGGTG-CCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
* *
13993308 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACC
1 TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
* **
13993358 TCTCATAATCTCAGCAATGCCAATTCCATGTCCCAGACATGGTCTTACA
1 TCTCAT-A--TC-G--GTGCCAACGCCATGTCCCAGACATGGTCTTACA
13993407 TGAGATCTCA
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
48 2 0.02
49 36 0.43
50 12 0.14
53 2 0.02
54 1 0.01
56 30 0.36
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (50 bp):
TCTCATATCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAGGGGACC
Found at i:13997790 original size:16 final size:17
Alignment explanation
Indices: 13997769--13997801 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
13997759 CACATTGAAG
13997769 TGTTTT-TTGAAAACCT
1 TGTTTTATTGAAAACCT
13997785 TGTTTTCATTGAAAACC
1 TGTTTT-ATTGAAAACC
13997802 CTTCTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.27, C:0.15, G:0.12, T:0.45
Consensus pattern (17 bp):
TGTTTTATTGAAAACCT
Found at i:13998720 original size:32 final size:32
Alignment explanation
Indices: 13998669--13998808 Score: 192
Period size: 32 Copynumber: 4.4 Consensus size: 32
13998659 AAATGGCTAG
* * *
13998669 AAGCCATAAGTA-CAGTAATATGATTGGCACA
1 AAGCCATCAGTAGTAGTAATATGATCGGCACA
*
13998700 AAGCCATCTGTAGTAGTAATATGATCGGCACA
1 AAGCCATCAGTAGTAGTAATATGATCGGCACA
* * *
13998732 CAGCCATCAGTAATGGTAATATGATCGGCACA
1 AAGCCATCAGTAGTAGTAATATGATCGGCACA
*
13998764 AAGCCATCAGTAGTAGTAATATGATCGACACA
1 AAGCCATCAGTAGTAGTAATATGATCGGCACA
*
13998796 AATCCATCAGTAG
1 AAGCCATCAGTAG
13998809 CATCGCAGCA
Statistics
Matches: 95, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
31 10 0.11
32 85 0.89
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (32 bp):
AAGCCATCAGTAGTAGTAATATGATCGGCACA
Found at i:13999042 original size:24 final size:24
Alignment explanation
Indices: 13998986--13999131 Score: 148
Period size: 24 Copynumber: 6.1 Consensus size: 24
13998976 TTAGTCACAC
* * **
13998986 AAATCACAAACAAATCAGTGATAC
1 AAATCACAGACAAATCAGTCATTT
* * *
13999010 CAATTACAGACAAATCTGTCATTT
1 AAATCACAGACAAATCAGTCATTT
13999034 AAATCACAGACAAATCAGTCATTT
1 AAATCACAGACAAATCAGTCATTT
* *
13999058 AAATCACAGACAAACCTGTCATTT
1 AAATCACAGACAAATCAGTCATTT
* * * *
13999082 ACATCTCGGACAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
* * *
13999106 ACATCACAGGCAAATCAATCATTT
1 AAATCACAGACAAATCAGTCATTT
13999130 AA
1 AA
13999132 CCCCGAGGGG
Statistics
Matches: 100, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 100 1.00
ACGTcount: A:0.44, C:0.23, G:0.08, T:0.25
Consensus pattern (24 bp):
AAATCACAGACAAATCAGTCATTT
Found at i:13999221 original size:27 final size:27
Alignment explanation
Indices: 13999183--13999261 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
13999173 GGTATTTTGG
13999183 TCATTTTACCCTTCGAGGGCATTACGA
1 TCATTTTACCCTTCGAGGGCATTACGA
* ** *
13999210 TCATTTTACCCTTCGAGGGTATTTTGG
1 TCATTTTACCCTTCGAGGGCATTACGA
*
13999237 TCATTTTACCCTAC-AGGGGCATTAC
1 TCATTTTACCCTTCGA-GGGCATTAC
13999262 CGTCATTAGA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGCATTACGA
Found at i:14012053 original size:14 final size:14
Alignment explanation
Indices: 14012034--14012065 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
14012024 AATGGAAGAA
14012034 CTTCAGGAAGATAG
1 CTTCAGGAAGATAG
14012048 CTTCAGGAAGATAG
1 CTTCAGGAAGATAG
14012062 CTTC
1 CTTC
14012066 TGCTTATCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (14 bp):
CTTCAGGAAGATAG
Found at i:14020566 original size:41 final size:44
Alignment explanation
Indices: 14020502--14020610 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 44
14020492 ATGCTATCTC
*
14020502 ATATCGATGCCACTATCCCAGACAAGGTCTTACACG-AATCA-A-
1 ATAT-GATGCCAATATCCCAGACAAGGTCTTACACGTAATCACAT
* * * *
14020544 ATATGATGCCAATGTCCTAGACATGGTCTTACATGTAATCACAT
1 ATATGATGCCAATATCCCAGACAAGGTCTTACACGTAATCACAT
14020588 ATATTGATGCC-ATCATCCCAGAC
1 ATA-TGATGCCAAT-ATCCCAGAC
14020611 GTGTTCTTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 26 0.47
42 9 0.16
43 1 0.02
44 5 0.09
45 14 0.25
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.27
Consensus pattern (44 bp):
ATATGATGCCAATATCCCAGACAAGGTCTTACACGTAATCACAT
Found at i:14026643 original size:26 final size:27
Alignment explanation
Indices: 14026580--14026959 Score: 355
Period size: 27 Copynumber: 14.2 Consensus size: 27
14026570 ATTCGTGGGC
* **
14026580 AAATGACCGAAATAATCCCATAGGGTA
1 AAATGATCGAAATACCCCCATAGGGTA
*
14026607 AAATGATCGAAATACCCCCAAAGGGT-
1 AAATGATCGAAATACCCCCATAGGGTA
* * *
14026633 AAATGATCGAAACACCCTCATAGGAT-
1 AAATGATCGAAATACCCCCATAGGGTA
* * *
14026659 AAATGATTGAAATACCTCGA-AGGGTA
1 AAATGATCGAAATACCCCCATAGGGTA
* *
14026685 AAATGATCGAAATACACCCATAAGGTA
1 AAATGATCGAAATACCCCCATAGGGTA
* * * *
14026712 AAATTA-CTGCAATGCCCCCGA-AGGGAA
1 AAATGATC-GAAATACCCCC-ATAGGGTA
* *
14026739 AAATGA-CCAAATTACCCCCATAAGGTA
1 AAATGATCGAAA-TACCCCCATAGGGTA
* * *
14026766 AAATGATCAAAATACCCTCAAAGGGTA
1 AAATGATCGAAATACCCCCATAGGGTA
*
14026793 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGATCGAAATACCCCCATAGGGTA
* *
14026820 AAAT-AACTGAAATACCCCTATAGGGTA
1 AAATGATC-GAAATACCCCCATAGGGTA
*
14026847 AAATAAAT-GAAATACCCCCATAGGGTA
1 AAAT-GATCGAAATACCCCCATAGGGTA
* * ** *
14026874 GAATAATTAAAATACCCTCATAGGGTA
1 AAATGATCGAAATACCCCCATAGGGTA
* * *
14026901 AAATGACCGGAACA-CCCCATAGGGTA
1 AAATGATCGAAATACCCCCATAGGGTA
14026927 AAATGATCGAAATACCCCCATAGGGTA
1 AAATGATCGAAATACCCCCATAGGGTA
14026954 AAATGA
1 AAATGA
14026960 CTGTTATACC
Statistics
Matches: 284, Mismatches: 57, Indels: 24
0.78 0.16 0.07
Matches are distributed among these distances:
25 4 0.01
26 84 0.30
27 190 0.67
28 5 0.02
29 1 0.00
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (27 bp):
AAATGATCGAAATACCCCCATAGGGTA
Found at i:14027142 original size:26 final size:26
Alignment explanation
Indices: 14027113--14027175 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
14027103 TGATACTAGT
*
14027113 AGCTTTGCTGCGATACTATTACTGGC
1 AGCTTTGCTGCGATACTACTACTGGC
* * *
14027139 AGCTTTGTTGCGATGCTACTACTGGT
1 AGCTTTGCTGCGATACTACTACTGGC
*
14027165 AGCTTTACTGC
1 AGCTTTGCTGC
14027176 AACATTGGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (26 bp):
AGCTTTGCTGCGATACTACTACTGGC
Found at i:14027350 original size:28 final size:28
Alignment explanation
Indices: 14027297--14027366 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
14027287 TACTGTGTTG
* *
14027297 GGCTAAGGCACACACTGTTACAGTATTA
1 GGCTAAGGCCCACACTGTTACAGTATCA
* * * * *
14027325 GGTTAAGGCCCACATTGTTTCTGTATCG
1 GGCTAAGGCCCACACTGTTACAGTATCA
14027353 GGCTAAGGCCCACA
1 GGCTAAGGCCCACA
14027367 ATGTATTGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (28 bp):
GGCTAAGGCCCACACTGTTACAGTATCA
Done.