Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 47 of 211
Found at i:14033225 original size:39 final size:40
Alignment explanation
Indices: 14033180--14033404 Score: 224
Period size: 40 Copynumber: 5.7 Consensus size: 40
14033170 GCTCCTCGTT
* * * *
14033180 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
14033220 C-AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
14033259 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
14033299 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
14033339 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
14033380 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
14033405 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
39 37 0.24
40 104 0.67
41 14 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:14033273 original size:40 final size:38
Alignment explanation
Indices: 14033147--14033404 Score: 200
Period size: 40 Copynumber: 6.5 Consensus size: 38
14033137 AAATCACGTA
* * *
14033147 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAG-TACTCG--CACAATG
* * * *
14033186 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCACAATG
*
14033225 CCTTCGGGACTTAACCCGGATTTAATGACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGT-ACTCGCAC-AATG
*
14033265 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGTA-CTCGCAC-AATG
* *
14033305 CCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCACAAATG
1 CCTTCGGGACTTAACCCGG-ATTTAGTA-CTCGCAC-AATG
** * * * *
14033345 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTAGT-AC-TCGCACAATG
*
14033385 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
14033405 CAGCATTCAA
Statistics
Matches: 180, Mismatches: 28, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.01
39 50 0.28
40 116 0.64
41 12 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (38 bp):
CCTTCGGGACTTAACCCGGATTTAGTACTCGCACAATG
Found at i:14033413 original size:41 final size:41
Alignment explanation
Indices: 14033336--14033413 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
14033326 CTTGTATCTC
* * *
14033336 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
14033377 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
14033414 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:14044523 original size:68 final size:68
Alignment explanation
Indices: 14044414--14044625 Score: 277
Period size: 68 Copynumber: 3.1 Consensus size: 68
14044404 CCTTAGAGAA
* * *
14044414 GGTTACAAGGTGTAACACCATAGCTCTACTATGACAACTAATAGAGTCTTCCAAGACATTAAACA
1 GGTTACAAGGTGTAAGACCATAGCTCAACTATGACAACTAATAGAGTCTCCCAAGACATTAAACA
14044479 TGG
66 TGG
* *
14044482 GGTTACAAGGTGTAAGACCATAGCTCGACTACT-ACAACTAATAGA-T-TCCACAAGGATATTAA
1 GGTTACAAGGTGTAAGACCATAGCTCAACTA-TGACAACTAATAGAGTCTCC-CAA-GACATTAA
*
14044544 ACATAG
63 ACATGG
* * * * *
14044550 GGTTACAAGGTGTAAGACCATAGCTCAACTTTGGCAACCAATAGAGTCTGCCAGGACATTAAACA
1 GGTTACAAGGTGTAAGACCATAGCTCAACTATGACAACTAATAGAGTCTCCCAAGACATTAAACA
14044615 TGG
66 TGG
14044618 GGTTACAA
1 GGTTACAA
14044626 CCATAGCTCA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
66 2 0.02
67 5 0.04
68 112 0.90
69 4 0.03
70 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (68 bp):
GGTTACAAGGTGTAAGACCATAGCTCAACTATGACAACTAATAGAGTCTCCCAAGACATTAAACA
TGG
Found at i:14044659 original size:59 final size:60
Alignment explanation
Indices: 14044566--14044683 Score: 177
Period size: 59 Copynumber: 2.0 Consensus size: 60
14044556 AAGGTGTAAG
*
14044566 ACCATAGCTCAACTTTGGCAACCAATAGAGTCTGCCAGGACA-TTAAACATGGGGTTACA
1 ACCATAGCTCAACTTTGGCAACCAATAGAGTCTGCCAGGAAATTTAAACATGGGGTTACA
** *
14044625 ACCATAGCTCAGTTTTGGCAACCAATAGTA-TCTGCCATGAAATTTAAACATGGGGTTAC
1 ACCATAGCTCAACTTTGGCAACCAATAG-AGTCTGCCAGGAAATTTAAACATGGGGTTAC
14044684 TAGGTGTAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 36 0.68
60 17 0.32
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.25
Consensus pattern (60 bp):
ACCATAGCTCAACTTTGGCAACCAATAGAGTCTGCCAGGAAATTTAAACATGGGGTTACA
Found at i:14046527 original size:11 final size:12
Alignment explanation
Indices: 14046496--14046520 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14046486 TAAACTTTCG
14046496 AAATATTTGAAA
1 AAATATTTGAAA
14046508 AAATATTTGAAA
1 AAATATTTGAAA
14046520 A
1 A
14046521 CTATTTGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
AAATATTTGAAA
Found at i:14047226 original size:22 final size:22
Alignment explanation
Indices: 14047200--14047244 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
14047190 AGATAAATAC
14047200 AAATAT-AATCGCATACATATCA
1 AAATATCAATCGCA-ACATATCA
*
14047222 AAATATCAATCTCAACATATCA
1 AAATATCAATCGCAACATATCA
14047244 A
1 A
14047245 TCATCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.51, C:0.20, G:0.02, T:0.27
Consensus pattern (22 bp):
AAATATCAATCGCAACATATCA
Found at i:14048952 original size:20 final size:20
Alignment explanation
Indices: 14048924--14048964 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14048914 GGGATCATGC
14048924 TCCCCTAACATATGGTAAGT
1 TCCCCTAACATATGGTAAGT
* *
14048944 TCCCTTAACTTATGGTAAGT
1 TCCCCTAACATATGGTAAGT
14048964 T
1 T
14048965 TGACCCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (20 bp):
TCCCCTAACATATGGTAAGT
Found at i:14062016 original size:39 final size:39
Alignment explanation
Indices: 14061954--14062126 Score: 195
Period size: 39 Copynumber: 4.4 Consensus size: 39
14061944 TATAAAATTA
* ** * *
14061954 TACCCCTGATCGCACTTTTGTGCCCCCGTTGTACTTCGG
1 TACCCCTGATAGCACTTACGTGCCCCTGTTATACTTCGG
* *
14061993 TACCCCTGATAGCAATTACGTGCCCCTGCTATACTTCGG
1 TACCCCTGATAGCACTTACGTGCCCCTGTTATACTTCGG
* * * *
14062032 CACACCTGATCGCACTTACGTGCCCCTGTTGTACTTCGG
1 TACCCCTGATAGCACTTACGTGCCCCTGTTATACTTCGG
* *
14062071 TACCCCTAGAT-GCACTTACATGCCCCTGTTATATTTCGG
1 TACCCCT-GATAGCACTTACGTGCCCCTGTTATACTTCGG
* *
14062110 TACTCTTGATAGCACTT
1 TACCCCTGATAGCACTT
14062127 TTGTGTCGTG
Statistics
Matches: 112, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
38 3 0.03
39 106 0.95
40 3 0.03
ACGTcount: A:0.17, C:0.33, G:0.18, T:0.32
Consensus pattern (39 bp):
TACCCCTGATAGCACTTACGTGCCCCTGTTATACTTCGG
Found at i:14062059 original size:20 final size:19
Alignment explanation
Indices: 14061995--14062098 Score: 61
Period size: 20 Copynumber: 5.3 Consensus size: 19
14061985 TACTTCGGTA
*
14061995 CCCCTGATAGCAATTACGTG
1 CCCCTGAT-GCACTTACGTG
* **
14062015 CCCCTGCTATACTT-CG-G
1 CCCCTGATGCACTTACGTG
14062032 CACACCTGATCGCACTTACGTG
1 C-C-CCTGAT-GCACTTACGTG
* * *
14062054 CCCCTGTTGTACTT-CGGTA
1 CCCCTGATGCACTTAC-GTG
*
14062073 CCCCTAGATGCACTTACATG
1 CCCCT-GATGCACTTACGTG
14062093 CCCCTG
1 CCCCTG
14062099 TTATATTTCG
Statistics
Matches: 62, Mismatches: 14, Indels: 17
0.67 0.15 0.18
Matches are distributed among these distances:
17 2 0.03
18 4 0.06
19 21 0.34
20 29 0.47
21 4 0.06
22 2 0.03
ACGTcount: A:0.18, C:0.37, G:0.18, T:0.27
Consensus pattern (19 bp):
CCCCTGATGCACTTACGTG
Found at i:14062095 original size:78 final size:78
Alignment explanation
Indices: 14061958--14062109 Score: 225
Period size: 78 Copynumber: 1.9 Consensus size: 78
14061948 AAATTATACC
** *
14061958 CCTGATCGCACTTTTGTGCCCCCGTTGTACTTCGGTACCCCTGATAGCAATTACGTGCCCCTGCT
1 CCTGATCGCACTTACGTGCCCCCGTTGTACTTCGGTACCCCTGATAGCAATTACATGCCCCTGCT
14062023 ATACTTCGGCACA
66 ATACTTCGGCACA
* * *
14062036 CCTGATCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCCTAGAT-GCACTTACATGCCCCTGT
1 CCTGATCGCACTTACGTGCCCCCGTTGTACTTCGGTACCCCT-GATAGCAATTACATGCCCCTGC
*
14062100 TATATTTCGG
65 TATACTTCGG
14062110 TACTCTTGAT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
78 63 0.95
79 3 0.05
ACGTcount: A:0.16, C:0.34, G:0.19, T:0.31
Consensus pattern (78 bp):
CCTGATCGCACTTACGTGCCCCCGTTGTACTTCGGTACCCCTGATAGCAATTACATGCCCCTGCT
ATACTTCGGCACA
Found at i:14065981 original size:25 final size:25
Alignment explanation
Indices: 14065953--14066006 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
14065943 TGTAGTGGCA
*
14065953 AGGTGGGGACATAGGTGTGGCAAGG
1 AGGTGGGGACACAGGTGTGGCAAGG
* * *
14065978 AGGTGGTGTCACAGGTGTGGTAAGG
1 AGGTGGGGACACAGGTGTGGCAAGG
14066003 AGGT
1 AGGT
14066007 TAGAGGTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.07, G:0.50, T:0.20
Consensus pattern (25 bp):
AGGTGGGGACACAGGTGTGGCAAGG
Found at i:14072043 original size:17 final size:18
Alignment explanation
Indices: 14072011--14072045 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
14072001 AATGGACCGG
14072011 AATGGGCCGAGTGGGCCC
1 AATGGGCCGAGTGGGCCC
*
14072029 AATGGGCC-TGTGGGCCC
1 AATGGGCCGAGTGGGCCC
14072046 TACGCGAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.14, C:0.29, G:0.43, T:0.14
Consensus pattern (18 bp):
AATGGGCCGAGTGGGCCC
Found at i:14080058 original size:43 final size:43
Alignment explanation
Indices: 14079997--14080273 Score: 322
Period size: 43 Copynumber: 6.4 Consensus size: 43
14079987 TAAAAGCGCC
14079997 GCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCA
1 GCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCA
* ** * * *
14080040 GCTAAAGAACATGACCTTTAACATCGCTTGTGTCACAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCA
* * * * *
14080083 GCTAAAGAACATGACCTTTAGTGACACTTCTATCACAAATGCT
1 GCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCA
* * * * *
14080126 GCTAAAGAATATGACCTTTAGCTGCGCTTCAATCATAAAAGCCA
1 GCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACG-CA
* * * *
14080170 -CTAAAGAACATGACCTTTTGCGGCGCTTGTGTCACAAACGCT
1 GCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCA
* * * *
14080212 GCTAAAGAACATGACTTTTAGCGGTGCTTTTATCACAAACGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCA
14080255 GCTAAAGAACATGACCTTT
1 GCTAAAGAACATGACCTTT
14080274 GTATGGCACT
Statistics
Matches: 192, Mismatches: 40, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
42 1 0.01
43 190 0.99
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (43 bp):
GCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCA
Found at i:14080140 original size:86 final size:85
Alignment explanation
Indices: 14079993--14080273 Score: 357
Period size: 86 Copynumber: 3.3 Consensus size: 85
14079983 TTTGTAAAAG
*
14079993 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCAGCTAAAGAACATGACCTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTAAAGAACATGACCTT
* * *
14080058 TAACATCGCTTGTGTCACAAA
66 TAGC-TCGCTTCTATCACAAA
* * * * *
14080079 CGCCGCTAAAGAACATGACCTTTAGTGACACTTCTATCACAAATGCTGCTAAAGAATATGACCTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTAAAGAACATGACCTT
* *
14080144 TAGCTGCGCTTCAATCATAAA
66 TAGCT-CGCTTCTATCACAAA
* * * * * *
14080165 AGCCACTAAAGAACATGACCTTTTGCGGCGCTTGTGTCACAAACGCTGCTAAAGAACATGACTTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTAAAGAACATGACCTT
*
14080230 TAGCGGT-GCTTTTATCACAAA
66 TAGC--TCGCTTCTATCACAAA
14080251 CGCCGCTAAAGAACATGACCTTT
1 CGCCGCTAAAGAACATGACCTTT
14080274 GTATGGCACT
Statistics
Matches: 165, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
85 1 0.01
86 163 0.99
88 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (85 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCTGCTAAAGAACATGACCTT
TAGCTCGCTTCTATCACAAA
Found at i:14080232 original size:129 final size:129
Alignment explanation
Indices: 14079993--14080273 Score: 384
Period size: 129 Copynumber: 2.2 Consensus size: 129
14079983 TTTGTAAAAG
* *
14079993 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCTATCACAAACGCAGCTAAAGAACATGACCTT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCAATCACAAAAGCAGCTAAAGAACATGACCTT
* *
14080058 TAACATCGCTTGTGTCACAAACGCCGCTAAAGAACATGACCTTTAGTGACACTTCTATCACAAA
66 TAACAGCGCTTGTGTCACAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTCTATCACAAA
* * * * *
14080122 TGCTGCTAAAGAATATGACCTTTAGCTGCGCTTCAATCATAAAAGCCA-CTAAAGAACATGACCT
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCAATCACAAAAG-CAGCTAAAGAACATGACCT
** * * * *** *
14080186 TTTGCGGCGCTTGTGTCACAAACGCTGCTAAAGAACATGACTTTTAGCGGTGCTTTTATCACAAA
65 TTAACAGCGCTTGTGTCACAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTCTATCACAAA
14080251 CGCCGCTAAAGAACATGACCTTT
1 CGCCGCTAAAGAACATGACCTTT
14080274 GTATGGCACT
Statistics
Matches: 130, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
129 128 0.98
130 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (129 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCAATCACAAAAGCAGCTAAAGAACATGACCTT
TAACAGCGCTTGTGTCACAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTCTATCACAAA
Found at i:14095881 original size:28 final size:28
Alignment explanation
Indices: 14095849--14095909 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
14095839 TGTCACTATT
* *
14095849 ACTGATACTGAAATGGGCTTAGGCTTAA
1 ACTGATACTGAAAAGGGCTTAGGCCTAA
*
14095877 ACTGATACTGAAAAGGGCTTAGGCCTAG
1 ACTGATACTGAAAAGGGCTTAGGCCTAA
14095905 ACTGA
1 ACTGA
14095910 GATTATCTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (28 bp):
ACTGATACTGAAAAGGGCTTAGGCCTAA
Found at i:14098416 original size:9 final size:9
Alignment explanation
Indices: 14098402--14098480 Score: 67
Period size: 9 Copynumber: 9.0 Consensus size: 9
14098392 TAAGTATAAT
14098402 TAAGTTATG
1 TAAGTTATG
14098411 TAAGTTATG
1 TAAGTTATG
* *
14098420 ATATGATA-G
1 -TAAGTTATG
*
14098429 -ATATTTATG
1 TA-AGTTATG
*
14098438 T-A-TTATT
1 TAAGTTATG
14098445 TAAGTTATG
1 TAAGTTATG
14098454 TAAGTTATG
1 TAAGTTATG
*
14098463 TGAGTTATG
1 TAAGTTATG
14098472 TAAGTTATG
1 TAAGTTATG
14098481 ATATGATATA
Statistics
Matches: 55, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
7 6 0.11
8 4 0.07
9 40 0.73
10 5 0.09
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:14098907 original size:119 final size:120
Alignment explanation
Indices: 14098684--14099330 Score: 1113
Period size: 120 Copynumber: 5.4 Consensus size: 120
14098674 AATAATAAGT
*
14098684 TATTTAGAAATATAATATTTATAATTATTTTTAAAATTTAAAAAATTATTAGTAATGAATTTGAA
1 TATTTA-AAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAA
*
14098749 ATGTAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
65 ATATAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
* * * *
14098805 TATTTACAATATAGTATTTATAATTA-TTTTAAAATTTTAAAATTTATTATTAATGAATTTGAAA
1 TATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAA
* *
14098869 TGTAGGTTATATATCCATACTAATATAGGTTATTTATT-AAAATATAGGTTTTAA
66 TATAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
*
14098923 TATCTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAA
1 TATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAA
* * *
14098988 TATAGGTTATATATACATACTAATATAAGTTATATATTTAAAATATAGGTTTTAA
66 TATAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
14099043 TATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAA
1 TATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAA
14099108 TATAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
66 TATAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
14099163 GTTATTTAAAA-A-AAGTATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTG
1 --TATTTAAAATATAA-TATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTG
*
14099226 AAATATAGGTTATATATCCATACTAATATAGGTTATATATTAAAACTATAGGTTTTAA
63 AAATATAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
14099284 TATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTA
1 TATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTA
14099331 AAAATTTATT
Statistics
Matches: 499, Mismatches: 20, Indels: 15
0.93 0.04 0.03
Matches are distributed among these distances:
118 39 0.08
119 151 0.30
120 186 0.37
121 114 0.23
122 9 0.02
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (120 bp):
TATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAA
TATAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAA
Found at i:14099254 original size:241 final size:241
Alignment explanation
Indices: 14098679--14099330 Score: 1118
Period size: 241 Copynumber: 2.7 Consensus size: 241
14098669 AATTGAATAA
*
14098679 TAAGTTATTTAGAAATATAATATTTATAATTATTTTTAAAATTTAAAAAATTATTAGTAATGAAT
1 TAAGTTATTTA-AAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAAT
* *
14098744 TTGAAATGTAGGTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTTTAATATT
65 TTGAAATATAGGTTATATATCCATACTAATATAGGTTATATATTTAAAATATAGGTTTTAATATT
* * * * *
14098809 TACAATATAGTATTTATAATTA-TTTTAAAATTTTAAAATTTATTATTAATGAATTTGAAATGTA
130 TAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAATATA
*
14098873 GGTTATATATCCATACTAATATAGGTTATTTATTAAAATATAGGTTT
195 GGTTATATATCCATACTAATATAGGTTATATATTAAAATATAGGTTT
*
14098920 TAA--TATCTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATT
1 TAAGTTATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATT
* *
14098983 TGAAATATAGGTTATATATACATACTAATATAAGTTATATATTTAAAATATAGGTTTTAATATTT
66 TGAAATATAGGTTATATATCCATACTAATATAGGTTATATATTTAAAATATAGGTTTTAATATTT
14099048 AAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAATATAG
131 AAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAATATAG
14099113 GTTATATATCCATACTAATATAGGTTATATATTAAAAATATAGGTTT
196 GTTATATATCCATACTAATATAGGTTATATATT-AAAATATAGGTTT
14099160 TAAGTTATTTAAAA-A-AAGTATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAAT
1 TAAGTTATTTAAAATATAA-TATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAAT
14099223 TTGAAATATAGGTTATATATCCATACTAATATAGGTTATATA-TTAAAACTATAGGTTTTAATAT
65 TTGAAATATAGGTTATATATCCATACTAATATAGGTTATATATTTAAAA-TATAGGTTTTAATAT
14099287 TTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTA
129 TTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTA
14099331 AAAATTTATT
Statistics
Matches: 390, Mismatches: 15, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
238 133 0.34
239 77 0.20
240 24 0.06
241 148 0.38
242 8 0.02
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (241 bp):
TAAGTTATTTAAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATT
TGAAATATAGGTTATATATCCATACTAATATAGGTTATATATTTAAAATATAGGTTTTAATATTT
AAAATATAATATTTATAATTATTTTTAAAATTTAAAAATTTATTAGTAATGAATTTGAAATATAG
GTTATATATCCATACTAATATAGGTTATATATTAAAATATAGGTTT
Found at i:14099273 original size:23 final size:23
Alignment explanation
Indices: 14099227--14099273 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
14099217 ATGAATTTGA
* *
14099227 AATATAGGTTATATATCCATACT
1 AATATAGGTTATATATCAAAACT
*
14099250 AATATAGGTTATATATTAAAACT
1 AATATAGGTTATATATCAAAACT
14099273 A
1 A
14099274 TAGGTTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.38
Consensus pattern (23 bp):
AATATAGGTTATATATCAAAACT
Found at i:14101210 original size:28 final size:28
Alignment explanation
Indices: 14101166--14101266 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
14101156 TGATTTTAGC
14101166 TAAACCCT-AACCACTAAACCATAAACTT
1 TAAACCCTAAACC-CTAAACCATAAACTT
*
14101194 TAAACCCTAAACCCTAAAACATAAACTT
1 TAAACCCTAAACCCTAAACCATAAACTT
* * *
14101222 TAAACCCCAAACCATAAACCATAAAC-C
1 TAAACCCTAAACCCTAAACCATAAACTT
* *
14101249 CATACCCTAAACCCTAAA
1 TAAACCCTAAACCCTAAA
14101267 TATATATATT
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 14 0.22
28 45 0.71
29 4 0.06
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.18
Consensus pattern (28 bp):
TAAACCCTAAACCCTAAACCATAAACTT
Found at i:14101262 original size:7 final size:7
Alignment explanation
Indices: 14101165--14101266 Score: 82
Period size: 7 Copynumber: 14.7 Consensus size: 7
14101155 ATGATTTTAG
14101165 CTAAACC
1 CTAAACC
14101172 CT-AACC
1 CTAAACC
14101178 ACTAAACC
1 -CTAAACC
* *
14101186 ATAAACT
1 CTAAACC
*
14101193 TTAAACC
1 CTAAACC
14101200 CTAAACC
1 CTAAACC
*
14101207 CTAAAAC
1 CTAAACC
* *
14101214 ATAAACT
1 CTAAACC
*
14101221 TTAAACC
1 CTAAACC
*
14101228 CCAAACC
1 CTAAACC
*
14101235 ATAAACC
1 CTAAACC
*
14101242 ATAAACC
1 CTAAACC
*
14101249 C-ATACC
1 CTAAACC
14101255 CTAAACC
1 CTAAACC
14101262 CTAAA
1 CTAAA
14101267 TATATATATT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
6 9 0.12
7 61 0.82
8 4 0.05
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:14101456 original size:14 final size:14
Alignment explanation
Indices: 14101432--14101472 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
14101422 CTATAAAATA
*
14101432 ATAAATCCTAAACC
1 ATAAACCCTAAACC
* *
14101446 TTAAACTCTAAACC
1 ATAAACCCTAAACC
14101460 ATAAACCCTAAAC
1 ATAAACCCTAAAC
14101473 TCAAAACTCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (14 bp):
ATAAACCCTAAACC
Found at i:14101457 original size:21 final size:21
Alignment explanation
Indices: 14101440--14101479 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14101430 TAATAAATCC
*
14101440 TAAACCTTAAACTCTAAACCA
1 TAAACCCTAAACTCTAAACCA
*
14101461 TAAACCCTAAACTCAAAAC
1 TAAACCCTAAACTCTAAAC
14101480 TCTAATCCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (21 bp):
TAAACCCTAAACTCTAAACCA
Found at i:14101479 original size:14 final size:14
Alignment explanation
Indices: 14101439--14101484 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
14101429 ATAATAAATC
*
14101439 CTAAACCTTAAACT
1 CTAAACCATAAACT
*
14101453 CTAAACCATAAACC
1 CTAAACCATAAACT
14101467 CTAAACTCA-AAACT
1 CTAAAC-CATAAACT
14101481 CTAA
1 CTAA
14101485 TCCCAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 26 0.93
15 2 0.07
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (14 bp):
CTAAACCATAAACT
Found at i:14101650 original size:18 final size:18
Alignment explanation
Indices: 14101627--14101663 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
14101617 TCTATAGCGG
14101627 CATTTTTCCTAAAAGCAC
1 CATTTTTCCTAAAAGCAC
14101645 CATTTTTCCTAAAAGCAC
1 CATTTTTCCTAAAAGCAC
14101663 C
1 C
14101664 GCTAATGCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.32
Consensus pattern (18 bp):
CATTTTTCCTAAAAGCAC
Found at i:14101661 original size:59 final size:59
Alignment explanation
Indices: 14101588--14101704 Score: 234
Period size: 59 Copynumber: 2.0 Consensus size: 59
14101578 CTTTGCGGTG
14101588 TTTTTCCTAAAAGCACCGCTAATGCTCGATCTATAGCGGCATTTTTCCTAAAAGCACCA
1 TTTTTCCTAAAAGCACCGCTAATGCTCGATCTATAGCGGCATTTTTCCTAAAAGCACCA
14101647 TTTTTCCTAAAAGCACCGCTAATGCTCGATCTATAGCGGCATTTTTCCTAAAAGCACC
1 TTTTTCCTAAAAGCACCGCTAATGCTCGATCTATAGCGGCATTTTTCCTAAAAGCACC
14101705 GCTAATTCTC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (59 bp):
TTTTTCCTAAAAGCACCGCTAATGCTCGATCTATAGCGGCATTTTTCCTAAAAGCACCA
Found at i:14101871 original size:115 final size:113
Alignment explanation
Indices: 14101685--14101994 Score: 326
Period size: 115 Copynumber: 2.7 Consensus size: 113
14101675 ATCTATAGCG
* * * *
14101685 GCATTTTTCCTAAAAGCACCGCTAATTCTCGATCTATTA-CGGC-TTTTCTAAAAAAGCGCCGCT
1 GCATTTTTCAT-AAAGCACCGCTAATGCTCGATCTA-TAGCGGCGTTTT-TCAAAAAGCGCTGCT
* * * *
14101748 AATGCCACTAAAGCTCAATGACAAATGACGTC-GTGTTGCTCAACTTTTTTGCA
63 AATGCCACTAAAGCTCAAT-A-AAATGACGGCAATG-TGCTCAAATTTTTTACA
** * * *
14101801 GTGTTTTTCATAAAGCACCGCTAATGCTCGACCTATAGCGGCGTTTTTCAAAAAGCACTGCCAAT
1 GCATTTTTCATAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCTGCTAAT
* * **
14101866 GCCACTAATGCTCAACATAAAATGACGGCAATGTGCTTAAATTTTTTATG
66 GCCACTAAAGCTC-A-ATAAAATGACGGCAATGTGCTCAAATTTTTTACA
*
14101916 GCATTTTTCA-AAAGCGCCGCTAATGCTCGATCTATAGCGAG-GTTTTTCAAAAAGCGCTGCTAA
1 GCATTTTTCATAAAGCACCGCTAATGCTCGATCTATAGCG-GCGTTTTTCAAAAAGCGCTGCTAA
14101979 TGTCC-CTAAAGCTCAA
65 TG-CCACTAAAGCTCAA
14101995 CATAAAACGA
Statistics
Matches: 163, Mismatches: 24, Indels: 18
0.80 0.12 0.09
Matches are distributed among these distances:
112 1 0.01
113 1 0.01
114 59 0.36
115 84 0.52
116 16 0.10
117 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (113 bp):
GCATTTTTCATAAAGCACCGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCTGCTAAT
GCCACTAAAGCTCAATAAAATGACGGCAATGTGCTCAAATTTTTTACA
Found at i:14102015 original size:114 final size:115
Alignment explanation
Indices: 14101804--14102026 Score: 308
Period size: 114 Copynumber: 1.9 Consensus size: 115
14101794 TTTTGCAGTG
14101804 TTTTTCATAAAGCACCGCTAATGCTCGACCTATAGCGGCGTTTTTCAAAAAGCACTGCCAATGCC
1 TTTTTCATAAAGCACCGCTAATGCTCGACCTATAGCGGCGTTTTTCAAAAAGCACTGCCAATGCC
* * *
14101869 ACTAATGCTCAACATAAAATGACGGCAATGTGCTTAAATTTTTTATGGCA
66 ACTAAAGCTCAACATAAAACGACAGCAATGTGCTTAAATTTTTTATGGCA
* * * *
14101919 TTTTTCA-AAAGCGCCGCTAATGCTCGATCTATAGCGAG-GTTTTTCAAAAAGCGCTGCTAATGT
1 TTTTTCATAAAGCACCGCTAATGCTCGACCTATAGCG-GCGTTTTTCAAAAAGCACTGCCAATG-
* ** *
14101982 CC-CTAAAGCTCAACATAAAACGATAGCGTTGTGCTTAATTTTTTT
64 CCACTAAAGCTCAACATAAAACGACAGCAATGTGCTTAAATTTTTT
14102027 TCGGCGCTTA
Statistics
Matches: 95, Mismatches: 11, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
114 85 0.89
115 10 0.11
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (115 bp):
TTTTTCATAAAGCACCGCTAATGCTCGACCTATAGCGGCGTTTTTCAAAAAGCACTGCCAATGCC
ACTAAAGCTCAACATAAAACGACAGCAATGTGCTTAAATTTTTTATGGCA
Found at i:14102124 original size:40 final size:40
Alignment explanation
Indices: 14102048--14102151 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
14102038 TGAGAAATGT
* *
14102048 CACTATAGATCTAGCATTAGCTGCGCTTTTAGAAAAACAC
1 CACTATAGATCGAGCATTAGCGGCGCTTTTAGAAAAACAC
* * ***
14102088 CACTATAGATCGAGCATTAGCGGTGTTTTTCA-AAAAATGT
1 CACTATAGATCGAGCATTAGCGGCGCTTTT-AGAAAAACAC
14102128 CACTATATG-TCGAGCATTAGCGGC
1 CACTATA-GATCGAGCATTAGCGGC
14102152 ATTTTTTGAA
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
40 52 0.96
41 2 0.04
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (40 bp):
CACTATAGATCGAGCATTAGCGGCGCTTTTAGAAAAACAC
Found at i:14102312 original size:40 final size:40
Alignment explanation
Indices: 14102245--14102384 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
14102235 AAAAGCACCA
* * * **
14102245 CTAATTCTCGACCTATAGTGGCATTTTTCTAAAAATGCCG
1 CTAATGCTCGATCTATAGCGGTGTTTTTCTAAAAATGCCG
*
14102285 CTAATGCTCGATCTATAGCGGTGTTTTT-TGAAAA-GCACCG
1 CTAATGCTCGATCTATAGCGGTGTTTTTCTAAAAATG--CCG
* * *
14102325 CTAATGCTCTATCTATAACGGTGTTTTTC-AAGAAT-CACTG
1 CTAATGCTCGATCTATAGCGGTGTTTTTCTAAAAATGC-C-G
* *
14102365 CGAATGCTTGATCTATAGCG
1 CTAATGCTCGATCTATAGCG
14102385 ACGTTTGGAC
Statistics
Matches: 80, Mismatches: 14, Indels: 12
0.75 0.13 0.11
Matches are distributed among these distances:
38 2 0.03
39 6 0.08
40 72 0.90
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (40 bp):
CTAATGCTCGATCTATAGCGGTGTTTTTCTAAAAATGCCG
Found at i:14105511 original size:25 final size:25
Alignment explanation
Indices: 14105483--14105533 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
14105473 AAGGGAATGA
*
14105483 AGAATAATG-GAAACGAAATGAAGAG
1 AGAAAAATGAGAAA-GAAATGAAGAG
* *
14105508 AGAAAAATGAGAGAGAAGTGAAGAG
1 AGAAAAATGAGAAAGAAATGAAGAG
14105533 A
1 A
14105534 TGAGAAGCGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.57, C:0.02, G:0.31, T:0.10
Consensus pattern (25 bp):
AGAAAAATGAGAAAGAAATGAAGAG
Found at i:14106129 original size:114 final size:114
Alignment explanation
Indices: 14105957--14106250 Score: 371
Period size: 113 Copynumber: 2.6 Consensus size: 114
14105947 GAAAATTTGT
* * * * *
14105957 GGCG-CTTTTAAAAAAA-ACCGCAAAAATGTTAATCATAACGCATCGTTTCACCTTGAGCTTTAG
1 GGCGACTTTCAAAAAAACACCAC-AAAATGTTAAGCAAAACGCATCGTTTTACCTTGAGCTTTAG
* * * * * *
14106020 TGGCATTAACGGCATTTTTAAGCAAATGCCACTATATATC-GAGTATTAGC
65 TGGCATTAACAGCATTTTTAAGAAAACGCCACGATATATCAG-GTAGTAAC
* * * * *
14106070 GGTGCCTTTCGAAAAAACACCACAAAATGTTGAGCAAAACGCATTGTTTTACCTTGAGCTTTAGT
1 GGCGACTTTCAAAAAAACACCACAAAATGTTAAGCAAAACGCATCGTTTTACCTTGAGCTTTAGT
*
14106135 -GCATTAGCAGCATTTTTAAGAAAACGCCACGATATATCAGGTAGTAAC
66 GGCATTAACAGCATTTTTAAGAAAACGCCACGATATATCAGGTAGTAAC
**
14106183 GGCGACTTTCAAAAAAATGCCACAAAATGTTAAGCAAAACGCATCGTTTTACCTTGAGCTTTAGT
1 GGCGACTTTCAAAAAAACACCACAAAATGTTAAGCAAAACGCATCGTTTTACCTTGAGCTTTAGT
14106248 GGC
66 GGC
14106251 TTTAGAGGCG
Statistics
Matches: 154, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
113 100 0.65
114 50 0.32
115 4 0.03
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (114 bp):
GGCGACTTTCAAAAAAACACCACAAAATGTTAAGCAAAACGCATCGTTTTACCTTGAGCTTTAGT
GGCATTAACAGCATTTTTAAGAAAACGCCACGATATATCAGGTAGTAAC
Found at i:14106638 original size:7 final size:7
Alignment explanation
Indices: 14106597--14106664 Score: 55
Period size: 7 Copynumber: 9.7 Consensus size: 7
14106587 CAGGATTATA
*
14106597 GTTTGGG
1 GTTTAGG
**
14106604 GTTTACA
1 GTTTAGG
*
14106611 GTTTAGA
1 GTTTAGG
14106618 GTTTAGG
1 GTTTAGG
14106625 GTTTAGG
1 GTTTAGG
14106632 GTTTAGG
1 GTTTAGG
*
14106639 ATTTAGG
1 GTTTAGG
** *
14106646 AATTATG
1 GTTTAGG
*
14106653 GTTTAAG
1 GTTTAGG
14106660 GTTTA
1 GTTTA
14106665 TGGTATATTG
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 50 1.00
ACGTcount: A:0.22, C:0.01, G:0.32, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:14109842 original size:48 final size:48
Alignment explanation
Indices: 14109757--14110187 Score: 332
Period size: 48 Copynumber: 8.8 Consensus size: 48
14109747 TAACTTATAT
*
14109757 AATTTACATAACTTACATAA-TT-CATAACTTACATAACTTAAAGATCA
1 AATTT-CATAACTTATATAATTTACATAACTTACATAACTTAAAGATCA
*
14109804 AATTTCATAACTTATATAATTTACATAATTTACATAACTTACATGATTTAAAGATCA
1 AATTTCATAACTTATATAATTTACATAACTTACAT-A---AC-----TTAAAGATCA
* *
14109861 AATTTCATATCTTATATAATTTACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTATATAATTTACATAACTTACATAACTTAAAGATCA
*
14109909 AATTTCATAACTTATATAATTTACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTATATAATTTACATAACTTACATAACTTAAAGATCA
**
14109957 AATTTCATAACTTATATAATTTACATAACTTACATAA-TTCATAACTTACA
1 AATTTCATAACTTATATAATTTACATAACTTACATAACTT-A-AAGAT-CA
* * * * * *
14110007 TAATTTAAAGATCAAATT-TCATAAATTATATAATTTACATAACTT--ACAT--
1 -AATTT---CAT-AACTTAT-ATAATTTACATAACTTACATAACTTAAAGATCA
* * * * * * *
14110056 AATTTACACAACTTACACAATTTAAAGATCAAATTTCATAACTT--ATAT--
1 AATTT-CATAACTTATATAATTT--ACAT-AACTTACATAACTTAAAGATCA
** *
14110104 AATTTACATAACTTGCATAA-TT-CATAACTTACATAATTTAAAGATCA
1 AATTT-CATAACTTATATAATTTACATAACTTACATAACTTAAAGATCA
*
14110151 AATTTCATATCTTATATAATTTACATAACTTACATAA
1 AATTTCATAACTTATATAATTTACATAACTTACATAA
14110188 TACATAAATA
Statistics
Matches: 318, Mismatches: 35, Indels: 61
0.77 0.08 0.15
Matches are distributed among these distances:
43 11 0.03
44 2 0.01
45 12 0.04
46 26 0.08
47 21 0.07
48 157 0.49
49 4 0.01
50 2 0.01
51 5 0.02
52 5 0.02
53 1 0.00
54 3 0.01
55 23 0.07
56 3 0.01
57 43 0.14
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (48 bp):
AATTTCATAACTTATATAATTTACATAACTTACATAACTTAAAGATCA
Found at i:14110017 original size:64 final size:64
Alignment explanation
Indices: 14109909--14110194 Score: 466
Period size: 64 Copynumber: 4.4 Consensus size: 64
14109899 TTAAAGATCA
*
14109909 AATTT-CATAACTTATATAATTTACATAACTTACATAATTTAAAGATCAAATTTCATAACTTATA
1 AATTTACATAACTTACATAA-TT-CATAACTTACATAATTTAAAGATCAAATTTCATAACTTATA
14109973 T
64 T
*
14109974 AATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAAATTATAT
1 AATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAACTTATAT
* *
14110038 AATTTACATAACTTACATAATTTACACAACTTACACAATTTAAAGATCAAATTTCATAACTTATA
1 AATTTACATAACTTACATAA-TT-CATAACTTACATAATTTAAAGATCAAATTTCATAACTTATA
14110103 T
64 T
* *
14110104 AATTTACATAACTTGCATAATTCATAACTTACATAATTTAAAGATCAAATTTCATATCTTATAT
1 AATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAACTTATAT
*
14110168 AATTTACATAACTTACATAATACATAA
1 AATTTACATAACTTACATAATTCATAA
14110195 ATATATATCA
Statistics
Matches: 207, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
64 125 0.60
65 11 0.05
66 71 0.34
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (64 bp):
AATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAACTTATAT
Found at i:14110051 original size:130 final size:130
Alignment explanation
Indices: 14109909--14110188 Score: 499
Period size: 130 Copynumber: 2.2 Consensus size: 130
14109899 TTAAAGATCA
* * *
14109909 AATTT-CATAACTTATATAATTTACATAACTTACATAATTTAAAGATCAAATTTCATAACTTATA
1 AATTTACATAACTTACATAATTTACACAACTTACACAATTTAAAGATCAAATTTCATAACTTATA
14109973 TAATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAAATTATAT
66 TAATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAAATTATAT
14110038 AATTTACATAACTTACATAATTTACACAACTTACACAATTTAAAGATCAAATTTCATAACTTATA
1 AATTTACATAACTTACATAATTTACACAACTTACACAATTTAAAGATCAAATTTCATAACTTATA
* **
14110103 TAATTTACATAACTTGCATAATTCATAACTTACATAATTTAAAGATCAAATTTCATATCTTATAT
66 TAATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAAATTATAT
14110168 AATTTACATAACTTACATAAT
1 AATTTACATAACTTACATAAT
14110189 ACATAAATAT
Statistics
Matches: 144, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 5 0.03
130 139 0.97
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (130 bp):
AATTTACATAACTTACATAATTTACACAACTTACACAATTTAAAGATCAAATTTCATAACTTATA
TAATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAAATTATAT
Found at i:14110113 original size:217 final size:217
Alignment explanation
Indices: 14109691--14110114 Score: 656
Period size: 217 Copynumber: 2.0 Consensus size: 217
14109681 ATATTATTTT
*
14109691 AAATTTCATAACTTATATAATTTACATAACTTACATAATTTAAAGATTAAATTTCATAACTTATA
1 AAATTTCATAACTTATATAATTTACATAACTTACATAATTTAAAGATCAAATTTCATAACTTATA
*
14109756 TAATTTACATAACTTACATAATTCATAACTTACATAACTTAAAGATCAAATTTCATAACTTATAT
66 TAATTTACATAACTTACATAATTCATAACTTACATAACTTAAAGATCAAATTTCATAAATTATAT
* ** * ** * * *
14109821 AATTTACATAATTTACATAACTTACATGATTTAAAGATCAAATTTCATATCTTATATAATTTACA
131 AATTTACATAACTTACATAACTTACACAACTTAAAGATCAAAGATCAAATCTTACATAACTTACA
14109886 TAACTTACATAATTTAAAGATC
196 TAACTTACATAATTTAAAGATC
14109908 AAATTTCATAACTTATATAATTTACATAACTTACATAATTTAAAGATCAAATTTCATAACTTATA
1 AAATTTCATAACTTATATAATTTACATAACTTACATAATTTAAAGATCAAATTTCATAACTTATA
*
14109973 TAATTTACATAACTTACATAATTCATAACTTACATAATTTAAAGATCAAATTTCATAAATTATAT
66 TAATTTACATAACTTACATAATTCATAACTTACATAACTTAAAGATCAAATTTCATAAATTATAT
* *
14110038 AATTTACATAACTTACATAATTTACACAACTTACACA-ATTTAAAGATCAAAT-TT-CATAACTT
131 AATTTACATAACTTACATAACTTACACAACTTA-A-AGA-TCAAAGATCAAATCTTACATAACTT
* *
14110100 ATATAATTTACATAA
193 ACATAACTTACATAA
14110115 CTTGCATAAT
Statistics
Matches: 188, Mismatches: 16, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
217 174 0.93
218 4 0.02
219 10 0.05
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.39
Consensus pattern (217 bp):
AAATTTCATAACTTATATAATTTACATAACTTACATAATTTAAAGATCAAATTTCATAACTTATA
TAATTTACATAACTTACATAATTCATAACTTACATAACTTAAAGATCAAATTTCATAAATTATAT
AATTTACATAACTTACATAACTTACACAACTTAAAGATCAAAGATCAAATCTTACATAACTTACA
TAACTTACATAATTTAAAGATC
Found at i:14116386 original size:27 final size:27
Alignment explanation
Indices: 14116355--14117086 Score: 749
Period size: 27 Copynumber: 27.2 Consensus size: 27
14116345 CTAAAATAGA
*
14116355 TAAAATGACCAAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
*
14116382 TAAAATGATCGAAATA-CCCTCATAGGG
1 TAAAATGACCGAAATACCCCT-ATAGGG
14116409 TAAAATGA-CGAAGATACCTCC-ATAGGG
1 TAAAATGACCGAA-ATACC-CCTATAGGG
* *
14116436 TAAAATGACCGAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCCTATAGGG
* *
14116463 TAGAATGACCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * *
14116490 TAGAATGACTGAAATA-CTCTCATAGGG
1 TAAAATGACCGAAATACCCCT-ATAGGG
* * *
14116517 TAAAATGATCGAAATACCCCCATAAGG
1 TAAAATGACCGAAATACCCCTATAGGG
*
14116544 TAAAATGATCGAAATA-CCCTCATAGGG
1 TAAAATGACCGAAATACCCCT-ATAGGG
14116571 TAAAATGACCGAAATA-CCCTCATAGGG
1 TAAAATGACCGAAATACCCCT-ATAGGG
* * *
14116598 TAAAATAACCAAAATACCCC-ATATGG
1 TAAAATGACCGAAATACCCCTATAGGG
*
14116624 TAAAATGACCAAAATA-CCCTCATAGGG
1 TAAAATGACCGAAATACCCCT-ATAGGG
**
14116651 TAAAATGACTAAAATACTCCC-ATAGGG
1 TAAAATGACCGAAATAC-CCCTATAGGG
*
14116678 TAGAATGACCGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * *
14116705 TAAAATCACCGAAATACTCCC-ATATGA
1 TAAAATGACCGAAATAC-CCCTATAGGG
*
14116732 TAAAATGACC-AAATACCCCTATAAGG
1 TAAAATGACCGAAATACCCCTATAGGG
*
14116758 TAAAATGACCAAAATATCCCC-ATAGGG
1 TAAAATGACCGAAATA-CCCCTATAGGG
* ** * *
14116785 TAGAATGATTGAAATACCCCCATATGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * *
14116812 TAGAATGACCGAAATATCCCTATAGGA
1 TAAAATGACCGAAATACCCCTATAGGG
*
14116839 TAGAATGACCGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * * *
14116866 TAGAATGACTGAAATA-CCCGATAAGG
1 TAAAATGACCGAAATACCCCTATAGGG
**
14116892 TAAAATGATTGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
*
14116919 TAAAATGACCAAAATACCTCC-ACT-GGG
1 TAAAATGACCGAAATACC-CCTA-TAGGG
* *
14116946 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
*
14116973 TAAAATGACCGAAATA-CCATCATAGGG
1 TAAAATGACCGAAATACCCCT-ATAGGG
* ** *
14117000 TAAAATGACTGGTATACCCATATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* *
14117027 TAAAATGATCGAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * * *
14117054 TAGACTGACTGAAATACCCCTATAAGG
1 TAAAATGACCGAAATACCCCTATAGGG
14117081 TAAAAT
1 TAAAAT
14117087 AATTATTATA
Statistics
Matches: 599, Mismatches: 79, Indels: 54
0.82 0.11 0.07
Matches are distributed among these distances:
25 6 0.01
26 89 0.15
27 475 0.79
28 24 0.04
29 5 0.01
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCTATAGGG
Found at i:14117113 original size:27 final size:27
Alignment explanation
Indices: 14117067--14117122 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
14117057 ACTGACTGAA
* * *
14117067 ATACCCCTATAAGGTAAAATAATTATT
1 ATACCCCTAGAAGATAAAATAACTATT
* *
14117094 ATACCCCTAGAAGATGAAATGACTATT
1 ATACCCCTAGAAGATAAAATAACTATT
14117121 AT
1 AT
14117123 GGCCTTATGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (27 bp):
ATACCCCTAGAAGATAAAATAACTATT
Found at i:14117592 original size:22 final size:22
Alignment explanation
Indices: 14117535--14117580 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
14117525 ATATTACATA
14117535 CTATTCACTGTATGATTGATAT
1 CTATTCACTGTATGATTGATAT
14117557 CTATTCACTGTATGATTGATAT
1 CTATTCACTGTATGATTGATAT
14117579 CT
1 CT
14117581 GTTACTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (22 bp):
CTATTCACTGTATGATTGATAT
Found at i:14134621 original size:17 final size:18
Alignment explanation
Indices: 14134586--14134622 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
14134576 CTAAGAAGTT
*
14134586 TGCTCGTGTGGGCCTACA
1 TGCTCGTGTGGGCCCACA
14134604 TGCTCGTGT-GGCCCACA
1 TGCTCGTGTGGGCCCACA
14134621 TG
1 TG
14134623 GCCTAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.30, G:0.32, T:0.27
Consensus pattern (18 bp):
TGCTCGTGTGGGCCCACA
Found at i:14140295 original size:26 final size:27
Alignment explanation
Indices: 14140265--14140316 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
14140255 TTCTCTCAGT
*
14140265 GGCCTCTA-TCCAGTATTGGGCCCATC
1 GGCCTCCACTCCAGTATTGGGCCCATC
14140291 GGCCTCCAGCTCCAGTATTGGGCCCA
1 GGCCTCCA-CTCCAGTATTGGGCCCA
14140317 ACGATCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 7 0.30
28 16 0.70
ACGTcount: A:0.15, C:0.37, G:0.25, T:0.23
Consensus pattern (27 bp):
GGCCTCCACTCCAGTATTGGGCCCATC
Found at i:14141271 original size:22 final size:23
Alignment explanation
Indices: 14141241--14141287 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
14141231 TAGTAGTTGT
*
14141241 AAATC-AAAACAATAAAAACCCA
1 AAATCAAAAACAAAAAAAACCCA
* *
14141263 AAATTAAAAATAAAAAAAACCCA
1 AAATCAAAAACAAAAAAAACCCA
14141286 AA
1 AA
14141288 GAGAGCATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.72, C:0.17, G:0.00, T:0.11
Consensus pattern (23 bp):
AAATCAAAAACAAAAAAAACCCA
Found at i:14145700 original size:20 final size:20
Alignment explanation
Indices: 14145638--14145741 Score: 79
Period size: 20 Copynumber: 5.3 Consensus size: 20
14145628 TATAATTATA
*
14145638 CCCCTAATCGTACTTACATG
1 CCCCTGATCGTACTTACATG
* ** *
14145658 CCCCTG-TTGTACTTAGGTA
1 CCCCTGATCGTACTTACATG
* *
14145677 CCCCTGATCGCACTTACGTG
1 CCCCTGATCGTACTTACATG
* *
14145697 CCCCTGGT-GTACTT-CAATA
1 CCCCTGATCGTACTTAC-ATG
* *
14145716 CCCCTGAACGCACTTACATG
1 CCCCTGATCGTACTTACATG
14145736 CCCCTG
1 CCCCTG
14145742 TTATATTTCG
Statistics
Matches: 63, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
18 1 0.02
19 27 0.43
20 34 0.54
21 1 0.02
ACGTcount: A:0.19, C:0.37, G:0.16, T:0.28
Consensus pattern (20 bp):
CCCCTGATCGTACTTACATG
Found at i:14145761 original size:39 final size:39
Alignment explanation
Indices: 14145635--14145761 Score: 148
Period size: 39 Copynumber: 3.3 Consensus size: 39
14145625 TTATATAATT
* *
14145635 ATACCCCT-AATCGTACTTACATGCCCCTGTTGTACTTAG
1 ATACCCCTGAA-CGCACTTACATGCCCCTGTTGTACTTCG
* * * * *
14145674 GTACCCCTGATCGCACTTACGTGCCCCTGGTGTACTTCA
1 ATACCCCTGAACGCACTTACATGCCCCTGTTGTACTTCG
* *
14145713 ATACCCCTGAACGCACTTACATGCCCCTGTTATATTTCG
1 ATACCCCTGAACGCACTTACATGCCCCTGTTGTACTTCG
*
14145752 ATACTCCTGA
1 ATACCCCTGA
14145762 TAACACTTTT
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 71 0.99
40 1 0.01
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (39 bp):
ATACCCCTGAACGCACTTACATGCCCCTGTTGTACTTCG
Found at i:14146814 original size:20 final size:20
Alignment explanation
Indices: 14146789--14146833 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
14146779 CCTGCAGTGT
14146789 TGAAAATTTTCAATATTTTC
1 TGAAAATTTTCAATATTTTC
14146809 TGAAAATTTTCAATATTTTC
1 TGAAAATTTTCAATATTTTC
14146829 T-AAAA
1 TGAAAA
14146834 AATTCTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (20 bp):
TGAAAATTTTCAATATTTTC
Found at i:14147376 original size:22 final size:22
Alignment explanation
Indices: 14147351--14147394 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14147341 GCTAATCCAT
14147351 CACTTAAACTAATTAACAAGAA
1 CACTTAAACTAATTAACAAGAA
** *
14147373 CACTTATTCTACTTAACAAGAA
1 CACTTAAACTAATTAACAAGAA
14147395 TTTCAACATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (22 bp):
CACTTAAACTAATTAACAAGAA
Found at i:14151385 original size:29 final size:29
Alignment explanation
Indices: 14151349--14151421 Score: 98
Period size: 29 Copynumber: 2.5 Consensus size: 29
14151339 TCATGAGATT
14151349 GGCACTAAGTGTGCGGA-TTTAAATTGTACA
1 GGCACTAAGTGTGCGGAGTTTAAA--GTACA
14151379 -GCACTAAGTGTGC-GAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGAGTTTAAAGTACA
14151406 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
14151422 CGGTTGATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
27 5 0.13
28 2 0.05
29 32 0.82
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGGAGTTTAAAGTACA
Found at i:14151693 original size:173 final size:175
Alignment explanation
Indices: 14151379--14151706 Score: 561
Period size: 174 Copynumber: 1.9 Consensus size: 175
14151369 AAATTGTACA
* *
14151379 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
14151444 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
14151509 TTTTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * **
14151553 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACGTTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
14151618 TGTGC-AACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
14151682 TTTTGGACAGCGGAAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAAGGTAAGT
14151707 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
173 70 0.49
174 74 0.51
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (175 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:14158394 original size:22 final size:22
Alignment explanation
Indices: 14158353--14158394 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
14158343 GCAGCAAAAC
* * *
14158353 AGGCTTTTAGCGGCCTTTTTTT
1 AGGCTTATAGCGACCCTTTTTT
14158375 AGGCTTATAGCGACCCTTTT
1 AGGCTTATAGCGACCCTTTT
14158395 AAGCGCCGCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (22 bp):
AGGCTTATAGCGACCCTTTTTT
Found at i:14158550 original size:43 final size:43
Alignment explanation
Indices: 14158488--14158673 Score: 167
Period size: 43 Copynumber: 4.3 Consensus size: 43
14158478 GTTTATGTGA
* * *
14158488 AAAAAACACCGTTATAGAACATGACCTTTAGCGGCGCTTTTAT
1 AAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT
* * * *
14158531 AAAAAACTCCGCTAAAGAACATGACCTTTAGTGGTGC-TTTACC
1 AAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTA-T
* * * * *
14158574 CACACACGCCGCTAAAGAACATGATCTTTAGCGGAGCTTTTAT
1 AAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT
* * * * * *
14158617 CACAAGCGCCGCTAAAGAGCATGAGCTTTAGCGGCGGTTTTAT
1 AAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT
* * *
14158660 GACAAACGTCGCTA
1 AAAAAACGCCGCTA
14158674 TAGAGAATAA
Statistics
Matches: 118, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
42 4 0.03
43 110 0.93
44 4 0.03
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAT
Found at i:14161876 original size:32 final size:31
Alignment explanation
Indices: 14161817--14161876 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
14161807 CTTTAAAATT
*
14161817 ATTTTTAATAATAGTATTTTAATTTTTTTTC
1 ATTTTTAACAATAGTATTTTAATTTTTTTTC
* *
14161848 ATTTTTAACATATA-TATTTTTATGTTTTT
1 ATTTTTAACA-ATAGTATTTTAATTTTTTT
14161877 ACTTTCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 22 0.88
32 3 0.12
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.65
Consensus pattern (31 bp):
ATTTTTAACAATAGTATTTTAATTTTTTTTC
Found at i:14162135 original size:7 final size:7
Alignment explanation
Indices: 14162094--14162249 Score: 113
Period size: 7 Copynumber: 22.1 Consensus size: 7
14162084 TTAAAATTAG
14162094 ACCCTAA
1 ACCCTAA
*
14162101 ACACTAA
1 ACCCTAA
*
14162108 ACCATAA
1 ACCCTAA
**
14162115 ACTTTAA
1 ACCCTAA
14162122 ACCCTAA
1 ACCCTAA
*
14162129 ACTCTAA
1 ACCCTAA
*
14162136 GCCCCTAA
1 -ACCCTAA
*
14162144 CCCCTAA
1 ACCCTAA
14162151 ACCCTAA
1 ACCCTAA
14162158 ACCCTAA
1 ACCCTAA
*
14162165 GCTCCT-A
1 AC-CCTAA
14162172 ACCCTTAA
1 ACCC-TAA
**
14162180 ACTATAA
1 ACCCTAA
14162187 ACCCTAA
1 ACCCTAA
14162194 ACCCTAA
1 ACCCTAA
14162201 ACCCTAA
1 ACCCTAA
**
14162208 AAACTAA
1 ACCCTAA
*
14162215 A-CTTCAA
1 ACCCT-AA
*
14162222 ACCATAA
1 ACCCTAA
14162229 ACCC-ACA
1 ACCCTA-A
14162236 A-CCTAA
1 ACCCTAA
14162242 ACCCTAA
1 ACCCTAA
14162249 A
1 A
14162250 TATGTATATT
Statistics
Matches: 117, Mismatches: 23, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
6 8 0.07
7 96 0.82
8 13 0.11
ACGTcount: A:0.44, C:0.37, G:0.01, T:0.18
Consensus pattern (7 bp):
ACCCTAA
Found at i:14162158 original size:29 final size:29
Alignment explanation
Indices: 14162119--14162208 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 29
14162109 CCATAAACTT
*
14162119 TAAACCCTAAACTCTAAGCCCCTAACCCC
1 TAAACCCTAAACCCTAAGCCCCTAACCCC
* *
14162148 TAAACCCTAAACCCTAAGCTCCTAACCCT
1 TAAACCCTAAACCCTAAGCCCCTAACCCC
** * *
14162177 TAAACTATAAACCCTAA-ACCCTAAACCC
1 TAAACCCTAAACCCTAAGCCCCTAACCCC
14162205 TAAA
1 TAAA
14162209 AACTAAACTT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 11 0.21
29 41 0.79
ACGTcount: A:0.40, C:0.39, G:0.02, T:0.19
Consensus pattern (29 bp):
TAAACCCTAAACCCTAAGCCCCTAACCCC
Found at i:14162715 original size:40 final size:40
Alignment explanation
Indices: 14162652--14162742 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 40
14162642 CAACTTTTTT
* *
14162652 GCGGCGTTTTACGAAAAGCGCCGCTAATGCTAGATCTATA
1 GCGGCGTTTTTCGAAAAGCGCCGCTAATGCTAGACCTATA
* * * *
14162692 GCGGCGTTTTTC-AACAAGTGCCGCTAATGCTTGACCTTTT
1 GCGGCGTTTTTCGAA-AAGCGCCGCTAATGCTAGACCTATA
14162732 GCGGCGTTTTT
1 GCGGCGTTTTT
14162743 GTCATAAACA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
39 2 0.05
40 42 0.95
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (40 bp):
GCGGCGTTTTTCGAAAAGCGCCGCTAATGCTAGACCTATA
Found at i:14164325 original size:17 final size:17
Alignment explanation
Indices: 14164293--14164325 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14164283 CACATGAAAT
14164293 ATAATCATTTTATTAAA
1 ATAATCATTTTATTAAA
14164310 ATAAT-ATTTTAGTTAA
1 ATAATCATTTTA-TTAA
14164326 GATCATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (17 bp):
ATAATCATTTTATTAAA
Found at i:14167031 original size:20 final size:20
Alignment explanation
Indices: 14167008--14167047 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
14166998 TTTTAGAAAA
*
14167008 AAAATCGTGTTTTGTGGAGT
1 AAAACCGTGTTTTGTGGAGT
14167028 AAAACCGTGTTTTGTGGAGT
1 AAAACCGTGTTTTGTGGAGT
14167048 TGCAGTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.07, G:0.30, T:0.38
Consensus pattern (20 bp):
AAAACCGTGTTTTGTGGAGT
Found at i:14168028 original size:20 final size:21
Alignment explanation
Indices: 14167987--14168029 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14167977 ATCGTTTCTA
*
14167987 TTTACAAAAAAAACCTTAGTT
1 TTTACAAAAAAAACCGTAGTT
*
14168008 TTTAGAAAAAAAACCGT-GTT
1 TTTACAAAAAAAACCGTAGTT
14168028 TT
1 TT
14168030 GTGGTGTTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (21 bp):
TTTACAAAAAAAACCGTAGTT
Found at i:14180311 original size:13 final size:12
Alignment explanation
Indices: 14180284--14180356 Score: 56
Period size: 14 Copynumber: 5.4 Consensus size: 12
14180274 ATTTTATTGT
14180284 TTTATATTTTTA
1 TTTATATTTTTA
*
14180296 TTTATCTTTATTA
1 TTTATATTT-TTA
14180309 TTTATTATTTTATA
1 TTTA-TATTTT-TA
*
14180323 TTGTTATCATTATTA
1 -T-TTAT-ATTTTTA
14180338 TTTTATTATTTTTA
1 -TTTA-TATTTTTA
14180352 TTTAT
1 TTTAT
14180357 TTATTCTCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
12 9 0.18
13 12 0.24
14 15 0.30
15 7 0.14
16 7 0.14
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (12 bp):
TTTATATTTTTA
Found at i:14180314 original size:17 final size:17
Alignment explanation
Indices: 14180288--14180361 Score: 54
Period size: 17 Copynumber: 4.6 Consensus size: 17
14180278 TATTGTTTTA
14180288 TATT-TTTATTTATCTT
1 TATTATTTATTTATCTT
14180304 TATTATTTA-TTAT-TT
1 TATTATTTATTTATCTT
* *
14180319 TA-TA-TT-GTTATCAT
1 TATTATTTATTTATCTT
*
14180333 TATTATTT-TATTATTTT
1 TATTATTTAT-TTATCTT
14180350 TATTTATTTATT
1 TA-TTATTTATT
14180362 CTCATTATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
13 6 0.13
14 5 0.11
15 6 0.13
16 10 0.22
17 11 0.24
18 7 0.15
19 1 0.02
ACGTcount: A:0.24, C:0.03, G:0.01, T:0.72
Consensus pattern (17 bp):
TATTATTTATTTATCTT
Found at i:14180320 original size:33 final size:37
Alignment explanation
Indices: 14180297--14180379 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 37
14180287 ATATTTTTAT
14180297 TTATCTTTATTATTTATTATTTTATATTGTTATCATTA
1 TTAT-TTTATTATTTATTATTTTATATTGTTATCATTA
* *
14180335 TTATTTTATTATTT-TTA-TTTAT-TTATTCTCATTA
1 TTATTTTATTATTTATTATTTTATATTGTTATCATTA
*
14180369 TTTTTGTTATT
1 TTATT-TTATT
14180380 GTCTTATTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
34 14 0.34
35 10 0.24
36 3 0.07
37 10 0.24
38 4 0.10
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.70
Consensus pattern (37 bp):
TTATTTTATTATTTATTATTTTATATTGTTATCATTA
Found at i:14180329 original size:29 final size:29
Alignment explanation
Indices: 14180277--14180353 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 29
14180267 TACATGGATT
* *
14180277 TTATTGTTTTA-TATTTTTA-T-TTATCT
1 TTATTATTTTATTATTTTTATTGTTATCA
14180303 TTATTA-TTTATTATTTTATATTGTTATCA
1 TTATTATTTTATTATTTT-TATTGTTATCA
14180332 TTATTATTTTATTATTTTTATT
1 TTATTATTTTATTATTTTTATT
14180354 TATTTATTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
25 4 0.09
26 11 0.25
27 2 0.05
28 1 0.02
29 15 0.34
30 11 0.25
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (29 bp):
TTATTATTTTATTATTTTTATTGTTATCA
Found at i:14180338 original size:22 final size:23
Alignment explanation
Indices: 14180310--14180352 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
14180300 TCTTTATTAT
14180310 TTATTATTTTA-TATTGTTATCA
1 TTATTATTTTATTATTGTTATCA
*
14180332 TTATTATTTTATTATTTTTAT
1 TTATTATTTTATTATTGTTAT
14180353 TTATTTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (23 bp):
TTATTATTTTATTATTGTTATCA
Found at i:14183861 original size:7 final size:7
Alignment explanation
Indices: 14183849--14183955 Score: 87
Period size: 7 Copynumber: 14.6 Consensus size: 7
14183839 AAAACAAACA
14183849 AAAAAAG
1 AAAAAAG
14183856 AAAAAA-
1 AAAAAAG
14183862 AAAGAAA-
1 AAA-AAAG
14183869 AAAAAGAG
1 AAAAA-AG
14183877 AAAGAAGAG
1 AAA-AA-AG
14183886 AAAAAAG
1 AAAAAAG
14183893 AAAAAAG
1 AAAAAAG
*
14183900 AAAGAAAA
1 AAA-AAAG
14183908 AAGAAAAG
1 AA-AAAAG
*
14183916 AAAGAAG
1 AAAAAAG
14183923 AAAGGAAA-
1 AAA--AAAG
14183931 AGAAAAAG
1 A-AAAAAG
14183939 -AAAAAG
1 AAAAAAG
14183945 AAAAAAG
1 AAAAAAG
14183952 AAAA
1 AAAA
14183956 GGAGAGGCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 22
0.77 0.04 0.20
Matches are distributed among these distances:
6 11 0.13
7 45 0.53
8 16 0.19
9 13 0.15
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:14183871 original size:12 final size:12
Alignment explanation
Indices: 14183836--14183955 Score: 93
Period size: 12 Copynumber: 10.0 Consensus size: 12
14183826 GTTCAAATTC
* *
14183836 AAAAAAACAAAC
1 AAAAAAAGAAAA
14183848 AAAAAAAGAAAA
1 AAAAAAAGAAAA
14183860 AAAAAGAA-AAAA
1 AAAAA-AAGAAAA
* *
14183872 AAGAGAAAGAAGA
1 AA-AAAAAGAAAA
*
14183885 GAAAAAAG-AAA
1 AAAAAAAGAAAA
*
14183896 AAAGAAAGAAAA
1 AAAAAAAGAAAA
*
14183908 AAGAAAAG-AAA
1 AAAAAAAGAAAA
* * *
14183919 GAAGAAAGGAAA
1 AAAAAAAGAAAA
*
14183931 AGAAAAAGAAAA
1 AAAAAAAGAAAA
14183943 AGAAAAAAGAAAA
1 A-AAAAAAGAAAA
14183956 GGAGAGGCCA
Statistics
Matches: 83, Mismatches: 19, Indels: 11
0.73 0.17 0.10
Matches are distributed among these distances:
11 16 0.19
12 49 0.59
13 18 0.22
ACGTcount: A:0.82, C:0.02, G:0.17, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:14183873 original size:19 final size:19
Alignment explanation
Indices: 14183848--14183955 Score: 98
Period size: 18 Copynumber: 5.6 Consensus size: 19
14183838 AAAAACAAAC
14183848 AAAAAAAGAAAAAAAAAGA
1 AAAAAAAGAAAAAAAAAGA
* *
14183867 AAAAAAAG-AGAAAGAAGA
1 AAAAAAAGAAAAAAAAAGA
*
14183885 GAAAAAAGAAAAAAGAAAG-
1 AAAAAAAGAAAAAA-AAAGA
14183904 -AAAAAAGAAAAGAAAGAAGA
1 AAAAAAAGAAAA-AAA-AAGA
*
14183924 AAGGAAAAGAAAAAGAAAA-A
1 AA-AAAAAGAAAAA-AAAAGA
*
14183944 GAAAAAAGAAAA
1 AAAAAAAGAAAA
14183956 GGAGAGGCCA
Statistics
Matches: 73, Mismatches: 8, Indels: 16
0.75 0.08 0.16
Matches are distributed among these distances:
18 27 0.37
19 26 0.36
20 5 0.07
21 4 0.05
22 11 0.15
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAAAAAAAAAGA
Found at i:14183956 original size:12 final size:12
Alignment explanation
Indices: 14183849--14183955 Score: 93
Period size: 11 Copynumber: 9.3 Consensus size: 12
14183839 AAAACAAACA
14183849 AAAAAAG-AAA-
1 AAAAAAGAAAAG
14183859 AAAAAAGAAAA-
1 AAAAAAGAAAAG
*
14183870 AAAAGAG-AAAG
1 AAAAAAGAAAAG
*
14183881 AAGAGAA-AAAAG
1 AA-AAAAGAAAAG
14183893 AAAAAAG-AAAG
1 AAAAAAGAAAAG
14183904 AAAAAAGAAAAG
1 AAAAAAGAAAAG
* *
14183916 AAAGAAGAAAGG
1 AAAAAAGAAAAG
*
14183928 AAAAGA-AAAAG
1 AAAAAAGAAAAG
*
14183939 AAAAAGAAAAAAG
1 AAAAA-AGAAAAG
14183952 AAAA
1 AAAA
14183956 GGAGAGGCCA
Statistics
Matches: 79, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
10 10 0.13
11 33 0.42
12 27 0.34
13 9 0.11
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:14185339 original size:88 final size:88
Alignment explanation
Indices: 14185190--14185775 Score: 958
Period size: 88 Copynumber: 6.7 Consensus size: 88
14185180 TGAAGACAGT
* ** *
14185190 AGATCTTGCCTTCCTGCATTGATAATGAAGCAGATCGAAGACGCAAGCCTTGCCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
* *
14185255 TAGTTGAGCAGGTCAAAGATAAC
66 TAGTGGAGCAGGTCAAAGATAGC
* * *
14185278 AGATCTTGCCTTTCTGCATTGACAGTGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
14185343 TAGTGGAGCAGGTCAAAGATAGC
66 TAGTGGAGCAGGTCAAAGATAGC
* * *
14185366 AGATCTTGCCTTCCTGCATTGATAGAGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
*
14185431 TAGTGGAGCAGGTCCAAGATAGC
66 TAGTGGAGCAGGTCAAAGATAGC
* * *
14185454 AGATCTTGCCTTCCTACATTGTCAGCGAAGCAGATCAAAGACACAAGCCTTGCCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
14185519 TAGTGGAGCAGGTCAAAGATAGC
66 TAGTGGAGCAGGTCAAAGATAGC
* * * *
14185542 AGATTTTGCCTTCCTGCATTTACAACGAAGCAGGTCGAAGACACAAGCCTTGCCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
*
14185607 TAGTGGAGCAGGTCAGAGATAGC
66 TAGTGGAGCAGGTCAAAGATAGC
*
14185630 AGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
14185695 T-GTGGAGCAGGTCAAAGATAGC
66 TAGTGGAGCAGGTCAAAGATAGC
*
14185717 AGATCTTGCCTTCCTGCATTGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCT
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCT
14185776 AAGCAGAAGT
Statistics
Matches: 466, Mismatches: 32, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
87 77 0.17
88 389 0.83
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (88 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTTG
TAGTGGAGCAGGTCAAAGATAGC
Found at i:14187701 original size:13 final size:12
Alignment explanation
Indices: 14187674--14187746 Score: 56
Period size: 14 Copynumber: 5.4 Consensus size: 12
14187664 ATTTTATTGC
14187674 TTTATATTTTTA
1 TTTATATTTTTA
*
14187686 TTTATCTTTATTA
1 TTTATATTT-TTA
14187699 TTTATTATTTTATA
1 TTTA-TATTTT-TA
*
14187713 TTGTTATCATTATTA
1 -T-TTAT-ATTTTTA
14187728 TTTTACTATTTTTA
1 -TTTA-TATTTTTA
14187742 TTTAT
1 TTTAT
14187747 TTATTCTCAT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
12 9 0.18
13 12 0.24
14 15 0.30
15 7 0.14
16 7 0.14
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.70
Consensus pattern (12 bp):
TTTATATTTTTA
Found at i:14187719 original size:29 final size:29
Alignment explanation
Indices: 14187674--14187743 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
14187664 ATTTTATTGC
*
14187674 TTTA-TATTTTTA-T-TTATCTTTATTA-
1 TTTACTATTTTTATTGTTATCATTATTAT
*
14187699 TTTATTATTTTATATTGTTATCATTATTAT
1 TTTACTATTTT-TATTGTTATCATTATTAT
14187729 TTTACTATTTTTATT
1 TTTACTATTTTTATT
14187744 TATTTATTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
25 4 0.11
26 6 0.16
27 2 0.05
28 1 0.03
29 15 0.39
30 10 0.26
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.70
Consensus pattern (29 bp):
TTTACTATTTTTATTGTTATCATTATTAT
Found at i:14187728 original size:22 final size:23
Alignment explanation
Indices: 14187700--14187742 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
14187690 TCTTTATTAT
14187700 TTATTATTTTA-TATTGTTATCA
1 TTATTATTTTACTATTGTTATCA
*
14187722 TTATTATTTTACTATTTTTAT
1 TTATTATTTTACTATTGTTAT
14187743 TTATTTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (23 bp):
TTATTATTTTACTATTGTTATCA
Found at i:14187751 original size:22 final size:20
Alignment explanation
Indices: 14187696--14187747 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 20
14187686 TTTATCTTTA
14187696 TTATTTATTATTTTATATTG
1 TTATTTATTATTTTATATTG
*
14187716 TTATCATTATTATTTTACTATTT
1 TTAT--TTATTATTTTA-TATTG
14187739 TTATTTATT
1 TTATTTATT
14187748 TATTCTCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 4 0.14
21 5 0.18
22 11 0.39
23 8 0.29
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (20 bp):
TTATTTATTATTTTATATTG
Found at i:14188705 original size:21 final size:21
Alignment explanation
Indices: 14188662--14188705 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
14188652 TTATCTCCCT
**
14188662 AAAATAAATATATAAAATTAA
1 AAAATAAATATATAAAAGGAA
*
14188683 AAAATATATATATAAAAGGAA
1 AAAATAAATATATAAAAGGAA
14188704 AA
1 AA
14188706 GAATCCTACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (21 bp):
AAAATAAATATATAAAAGGAA
Found at i:14190418 original size:195 final size:195
Alignment explanation
Indices: 14190086--14190450 Score: 595
Period size: 195 Copynumber: 1.9 Consensus size: 195
14190076 TCCTCCAGAG
* * *
14190086 GTCAAGACACTAACAATTAATTCTATTTTCGAACTTCATCACTTGCCTACCTGATGGGATCAAAA
1 GTCAAGACACTAACAATTAACTCTATTTTCGAACTTCATCACTTGCCTACCTGACGGGACCAAAA
* *
14190151 AAGTTATTTCATCGGTTGAAATCAATATTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGT
66 AAGTTATTTCATCGATCGAAATCAATATTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGT
*
14190216 CCAAATATATGGGTTGAACCGATTGACCCACGAATCGATATAGACCGATTAAACTAAGTTAAAAA
131 CCAAATATATGGGTTGAACCAATTGACCCACGAATCGATATAGACCGATTAAACTAAGTTAAAAA
* * *
14190281 GTCAAGACACTAGCGATTAACTCTATTTTCGAACTTCATCACTTGCCTACCTGACGGGACCAGAA
1 GTCAAGACACTAACAATTAACTCTATTTTCGAACTTCATCACTTGCCTACCTGACGGGACCAAAA
* * *
14190346 AAGTTTTTTCATCGATCGAAATCAATATTTTCAGAACTAGACCGAGAACCGATCAAGGTATTGGT
66 AAGTTATTTCATCGATCGAAATCAATATTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGT
* * *
14190411 TCAAATATATGGGTTGAATCAATTGACCCGCGAATCGATA
131 CCAAATATATGGGTTGAACCAATTGACCCACGAATCGATA
14190451 CAATCTGGTT
Statistics
Matches: 155, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
195 155 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (195 bp):
GTCAAGACACTAACAATTAACTCTATTTTCGAACTTCATCACTTGCCTACCTGACGGGACCAAAA
AAGTTATTTCATCGATCGAAATCAATATTTTCAGAACTAGACCGAGAACCAATCAAGGTACTGGT
CCAAATATATGGGTTGAACCAATTGACCCACGAATCGATATAGACCGATTAAACTAAGTTAAAAA
Found at i:14190533 original size:24 final size:24
Alignment explanation
Indices: 14190501--14190559 Score: 100
Period size: 24 Copynumber: 2.5 Consensus size: 24
14190491 TTTTCTTTTT
14190501 TTTTTAATAATCCTATTTTATTAA
1 TTTTTAATAATCCTATTTTATTAA
*
14190525 TTTTTAATAATTCTATTTTATTAA
1 TTTTTAATAATCCTATTTTATTAA
*
14190549 TTATTAATAAT
1 TTTTTAATAAT
14190560 TTATTTAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (24 bp):
TTTTTAATAATCCTATTTTATTAA
Found at i:14195671 original size:131 final size:132
Alignment explanation
Indices: 14195455--14195845 Score: 556
Period size: 131 Copynumber: 3.0 Consensus size: 132
14195445 CACTGCAACT
* * *
14195455 TCAGGGAGATA-AGGCTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGACTCACC
1 TCAGGGAGATAGA-ACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGATTCACC
* * * * * *
14195519 GTCTTTGATCTACTCCGCTACTGCTTAGGGAGACATGATATACAATTTTCAACCTACTCTACTAC
65 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTAC
14195584 TGC
130 TGC
* * *
14195587 TCAGGGAGATAGAACTGGTGGCTTAAATCCGCTT-CCTACTATCTTTGAAAGATAAGATTCACCG
1 TCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGATTCACCG
* * *
14195651 TCTTTGATCTGCTCCACTACTGCTTAGGGAGATAGGATCTATAATCTTCAACCTACTCCACTGCT
66 TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTACT
14195716 GC
131 GC
* * *
14195718 TCAAGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTA-TACCTTGGGAAA-ATAAGATTCGCC
1 TCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACTACCTT-GGAAAGATAAGATTCACC
* *
14195781 GTCTTTGATCTGCTCCACTATTGCTTAGGGAGACAGGATCTACAATCTTCAACCTATTCCACTAC
65 GTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTAC
14195846 AAACTCAAAG
Statistics
Matches: 230, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
131 191 0.83
132 38 0.17
133 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (132 bp):
TCAGGGAGATAGAACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGATTCACCG
TCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTACT
GC
Found at i:14196001 original size:89 final size:89
Alignment explanation
Indices: 14195838--14196002 Score: 217
Period size: 89 Copynumber: 1.9 Consensus size: 89
14195828 TTCAACCTAT
* * *
14195838 TCCACTACAAACTCAAAGAGGCAAGGCTGGTGTTTTCGATGTGCTTCACTGCCAGTACAGGAAGA
1 TCCACTACAAACTCAAAGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGA
*
14195903 GAAGTTCTGCTGTTTTGAGTCTGC
66 GAAGATCTGCTGTTTTGAGTCTGC
* ** * *
14195927 TCCACTGCAAACTCAGGGAGGCAATGCTGGTGTCTTCGATCTGCTTCGCTGCCAATAC-GGAA-A
1 TCCACTACAAACTCAAAGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGA
14195990 GCCAAGATCTGCT
66 G--AAGATCTGCT
14196003 ATCGTCAGTC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 2 0.03
88 4 0.06
89 59 0.91
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.26
Consensus pattern (89 bp):
TCCACTACAAACTCAAAGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGCCAATACAGGAAGA
GAAGATCTGCTGTTTTGAGTCTGC
Found at i:14196174 original size:44 final size:44
Alignment explanation
Indices: 14196107--14196221 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 44
14196097 ATTTTAATCC
* * * * *
14196107 GCTCTACTACAACTTCAGAGAGATAGGATTAGTAGCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAACCT
* * * * **
14196151 GCTCCACTGTAGCTTTAGGGAGATAAGATTGGTATTTTCAACCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAACCT
14196195 GCTCCACTGCAACTTCAGGGAGATAAG
1 GCTCCACTGCAACTTCAGGGAGATAAG
14196222 GTTTGATGTG
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
44 57 1.00
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAACCT
Found at i:14196476 original size:51 final size:51
Alignment explanation
Indices: 14196421--14196580 Score: 154
Period size: 51 Copynumber: 3.3 Consensus size: 51
14196411 GATCTACTCT
14196421 ACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCC
1 ACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCC
* * * * * * * **
14196472 ACTGCAGCTTCAG-GAAAATGAGATC--CG--CTAT--CTTCAGTCTGCCCC
1 ACTGCAACTTCAGAG-AGATAAGATCTGTGATTTATAGCTTTAATCTGTTCC
* *
14196517 ACTGTAACTTTAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCC
1 ACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCC
*
14196568 ACTGCAGCTTCAG
1 ACTGCAACTTCAG
14196581 GAAAATGAGA
Statistics
Matches: 78, Mismatches: 23, Indels: 16
0.67 0.20 0.14
Matches are distributed among these distances:
45 28 0.36
46 1 0.01
47 4 0.05
49 4 0.05
50 1 0.01
51 40 0.51
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (51 bp):
ACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCC
Found at i:14196549 original size:96 final size:96
Alignment explanation
Indices: 14196421--14196635 Score: 358
Period size: 96 Copynumber: 2.2 Consensus size: 96
14196411 GATCTACTCT
14196421 ACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCCACTGCAGCTTCAGG
1 ACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCCACTGCAGCTTCAGG
14196486 AAAATGAGATCCGCTATCTTCAGTCTGCCCC
66 AAAATGAGATCCGCTATCTTCAGTCTGCCCC
* *
14196517 ACTGTAACTTTAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCCACTGCAGCTTCAGG
1 ACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCCACTGCAGCTTCAGG
* *
14196582 AAAATGAGATTCGCTATCTTCAGTTTGCCCC
66 AAAATGAGATCCGCTATCTTCAGTCTGCCCC
* * * *
14196613 GCTGCAAATTCAGGGGGATAAGA
1 ACTGCAACTTCAGAGAGATAAGA
14196636 CTCACTTTCT
Statistics
Matches: 109, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 109 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (96 bp):
ACTGCAACTTCAGAGAGATAAGATCTGTGATTTATAGCTTTAATCTGTTCCACTGCAGCTTCAGG
AAAATGAGATCCGCTATCTTCAGTCTGCCCC
Found at i:14218521 original size:21 final size:21
Alignment explanation
Indices: 14218495--14218544 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
14218485 CTGAGTGTGC
*
14218495 TGATTGTAGTTTTACTATTGT
1 TGATTGTAGTTCTACTATTGT
*
14218516 TGATTGTAGTTCTACTGTTGT
1 TGATTGTAGTTCTACTATTGT
*
14218537 TCATTGTA
1 TGATTGTA
14218545 ATTCCCTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.18, C:0.08, G:0.20, T:0.54
Consensus pattern (21 bp):
TGATTGTAGTTCTACTATTGT
Found at i:14221757 original size:47 final size:47
Alignment explanation
Indices: 14221688--14222113 Score: 649
Period size: 47 Copynumber: 9.1 Consensus size: 47
14221678 GAAATGATAG
14221688 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
14221735 TAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
14221782 TAAGACCTAATGGCCGAGGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
14221829 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
14221876 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
14221923 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14221970 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14222017 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
14222063 CAGGGCCGAGTGGCCAACT-TGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATATATGTGA
14222110 TAAG
1 TAAG
14222114 TCCCGAAGGG
Statistics
Matches: 352, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 39 0.11
47 313 0.89
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:14221849 original size:24 final size:24
Alignment explanation
Indices: 14221821--14221896 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
14221811 GAAAGTGTAT
14221821 ATGTGTGATAAGGCCAAATGGCCG
1 ATGTGTGATAAGGCCAAATGGCCG
* ***
14221845 ATGTGATGA-ATGTG--AAA-GTGTAT
1 ATGTG-TGATAAG-GCCAAATG-GCCG
14221868 ATGTGTGATAAGGCCAAATGGCCG
1 ATGTGTGATAAGGCCAAATGGCCG
14221892 ATGTG
1 ATGTG
14221897 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 5 0.14
23 11 0.30
24 16 0.43
25 5 0.14
ACGTcount: A:0.30, C:0.11, G:0.33, T:0.26
Consensus pattern (24 bp):
ATGTGTGATAAGGCCAAATGGCCG
Found at i:14222288 original size:37 final size:37
Alignment explanation
Indices: 14222232--14222310 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14222222 CCGAGCTCTA
* * *
14222232 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
14222269 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14222306 AAGAC
1 AAGAC
14222311 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14224210 original size:43 final size:43
Alignment explanation
Indices: 14224163--14224265 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
14224153 TTGGTTTTCA
14224163 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
14224206 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
14224249 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
14224266 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:14224282 original size:29 final size:29
Alignment explanation
Indices: 14224247--14224320 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
14224237 GTTGTGAGAT
* *
14224247 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
14224276 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
14224305 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
14224321 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:14228234 original size:47 final size:47
Alignment explanation
Indices: 14228168--14228548 Score: 602
Period size: 47 Copynumber: 8.1 Consensus size: 47
14228158 GAAATGATAG
14228168 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14228215 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-TATATGTGA
*
14228263 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14228310 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14228357 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
**
14228404 TAAGGCCTAATATCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14228451 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-TGTGA
* * * * * * * * *
14228498 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14228545 TAAG
1 TAAG
14228549 TCCCGAAGGG
Statistics
Matches: 314, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 20 0.06
47 231 0.74
48 63 0.20
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:14228723 original size:37 final size:37
Alignment explanation
Indices: 14228667--14228745 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14228657 CCGAGCTCTA
* * *
14228667 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
14228704 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14228741 AAGAC
1 AAGAC
14228746 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14253445 original size:41 final size:41
Alignment explanation
Indices: 14253382--14253555 Score: 197
Period size: 41 Copynumber: 4.3 Consensus size: 41
14253372 GGGTACAAAA
* * *
14253382 GTGC-ATTTAAGGGTACCAAAGTATAAACAGTGGCACGTAT
1 GTGCAATTCAAGGGTACCGAAGTATAAACAGGGGCACGTAT
* * * * *
14253422 GTGCAATTTAGGGGTATCGAAGTACAATCAGGGGCACGTAT
1 GTGCAATTCAAGGGTACCGAAGTATAAACAGGGGCACGTAT
*
14253463 GTGTAATTCAAGGGTACCGAAGTATAAACAGGGGCACGTAT
1 GTGCAATTCAAGGGTACCGAAGTATAAACAGGGGCACGTAT
* * * * *
14253504 GTGCAATTCAGGGGTACTGAAATACAATCAGGGGCACGTAT
1 GTGCAATTCAAGGGTACCGAAGTATAAACAGGGGCACGTAT
* *
14253545 ATGTAATTCAA
1 GTGCAATTCAA
14253556 CAATATTATT
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
40 4 0.04
41 108 0.96
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (41 bp):
GTGCAATTCAAGGGTACCGAAGTATAAACAGGGGCACGTAT
Found at i:14253517 original size:21 final size:21
Alignment explanation
Indices: 14253413--14253517 Score: 65
Period size: 21 Copynumber: 5.1 Consensus size: 21
14253403 TATAAACAGT
*
14253413 GGCACGTATGTGCAATTTAGG
1 GGCACGTATGTGCAATTCAGG
* * *
14253434 GGTATCG-AAGTACAA-TCAGG
1 GGCA-CGTATGTGCAATTCAGG
* *
14253454 GGCACGTATGTGTAATTCAAG
1 GGCACGTATGTGCAATTCAGG
* * ** *
14253475 GGTACCG-AAGTATAA-ACAGG
1 GGCA-CGTATGTGCAATTCAGG
14253495 GGCACGTATGTGCAATTCAGG
1 GGCACGTATGTGCAATTCAGG
14253516 GG
1 GG
14253518 TACTGAAATA
Statistics
Matches: 59, Mismatches: 19, Indels: 12
0.66 0.21 0.13
Matches are distributed among these distances:
19 4 0.07
20 23 0.39
21 28 0.47
22 4 0.07
ACGTcount: A:0.30, C:0.15, G:0.32, T:0.23
Consensus pattern (21 bp):
GGCACGTATGTGCAATTCAGG
Found at i:14253530 original size:82 final size:82
Alignment explanation
Indices: 14253390--14253555 Score: 271
Period size: 82 Copynumber: 2.0 Consensus size: 82
14253380 AAGTGCATTT
* * *
14253390 AAGGGTACCAAAGTATAAACAGTGGCACGTATGTGCAATTTAGGGGTATCGAAGTACAATCAGGG
1 AAGGGTACCAAAGTATAAACAGGGGCACGTATGTGCAATTCAGGGGTATCGAAATACAATCAGGG
*
14253455 GCACGTATGTGTAATTC
66 GCACGTATATGTAATTC
*
14253472 AAGGGTACCGAAGTATAAACAGGGGCACGTATGTGCAATTCAGGGGTA-CTGAAATACAATCAGG
1 AAGGGTACCAAAGTATAAACAGGGGCACGTATGTGCAATTCAGGGGTATC-GAAATACAATCAGG
14253536 GGCACGTATATGTAATTC
65 GGCACGTATATGTAATTC
14253554 AA
1 AA
14253556 CAATATTATT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
81 1 0.01
82 77 0.99
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (82 bp):
AAGGGTACCAAAGTATAAACAGGGGCACGTATGTGCAATTCAGGGGTATCGAAATACAATCAGGG
GCACGTATATGTAATTC
Found at i:14256241 original size:9 final size:9
Alignment explanation
Indices: 14256189--14256242 Score: 54
Period size: 9 Copynumber: 5.4 Consensus size: 9
14256179 TAAAAATTCT
14256189 AAAAAATTA
1 AAAAAATTA
14256198 AAAAAATCTA
1 AAAAAAT-TA
14256208 AAAAATATATA
1 AAAAA-AT-TA
*
14256219 AACAAAGTTTA
1 AA-AAA-ATTA
14256230 AAAAAATTA
1 AAAAAATTA
14256239 AAAA
1 AAAA
14256243 CTTTCTAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 14 0.37
10 10 0.26
11 10 0.26
12 4 0.11
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.22
Consensus pattern (9 bp):
AAAAAATTA
Found at i:14261872 original size:21 final size:21
Alignment explanation
Indices: 14261826--14261898 Score: 73
Period size: 22 Copynumber: 3.5 Consensus size: 21
14261816 AATTGAAAGC
14261826 ATAC-AAAAATTATGA-GGTA
1 ATACAAAAAATTATGAGGGTA
*
14261845 ATACAAAAAAATTATGAGGGTT
1 ATAC-AAAAAATTATGAGGGTA
*
14261867 AT-CAAAAAATTTTGAGGAAGTA
1 ATACAAAAAATTATGAGG--GTA
14261889 ATA-AAAAAAT
1 ATACAAAAAAT
14261899 ATAAGGAGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
19 4 0.09
20 13 0.29
21 12 0.27
22 16 0.36
ACGTcount: A:0.55, C:0.04, G:0.15, T:0.26
Consensus pattern (21 bp):
ATACAAAAAATTATGAGGGTA
Found at i:14261873 original size:20 final size:22
Alignment explanation
Indices: 14261830--14261897 Score: 72
Period size: 20 Copynumber: 3.2 Consensus size: 22
14261820 GAAAGCATAC
14261830 AAAAATTATGA-GGTAATACAA
1 AAAAATTATGAGGGTAATACAA
*
14261851 AAAAATTATGAGGGTTAT-C-A
1 AAAAATTATGAGGGTAATACAA
*
14261871 AAAAATTTTGAGGAAGTAATA-AA
1 AAAAATTATGAGG--GTAATACAA
14261894 AAAA
1 AAAA
14261898 TATAAGGAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 13 0.33
21 12 0.31
22 9 0.23
23 5 0.13
ACGTcount: A:0.56, C:0.03, G:0.16, T:0.25
Consensus pattern (22 bp):
AAAAATTATGAGGGTAATACAA
Found at i:14262384 original size:20 final size:20
Alignment explanation
Indices: 14262359--14262406 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
14262349 TAAAGTATAT
* *
14262359 AAAAAATATGAGATATTACA
1 AAAAAATATGAGAAAATACA
* *
14262379 AAAAAAAATGAGAAAATACC
1 AAAAAATATGAGAAAATACA
14262399 AAAAAATA
1 AAAAAATA
14262407 CATGGGTGTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.69, C:0.06, G:0.08, T:0.17
Consensus pattern (20 bp):
AAAAAATATGAGAAAATACA
Found at i:14262509 original size:20 final size:21
Alignment explanation
Indices: 14262484--14262553 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 21
14262474 AAAAAGTACC
14262484 AAAAATT-GTAAGGAGATA-TT
1 AAAAATTAGTAAGGA-ATACTT
*
14262504 AAAAATTATTAAGGAATACTT
1 AAAAATTAGTAAGGAATACTT
* **
14262525 AAAAAATA-TAAGAGAATACAA
1 AAAAATTAGTAAG-GAATACTT
14262546 AAAAATTA
1 AAAAATTA
14262554 TGAGGAGATG
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
20 14 0.33
21 28 0.67
ACGTcount: A:0.60, C:0.03, G:0.11, T:0.26
Consensus pattern (21 bp):
AAAAATTAGTAAGGAATACTT
Found at i:14262549 original size:41 final size:40
Alignment explanation
Indices: 14262504--14262613 Score: 95
Period size: 38 Copynumber: 2.8 Consensus size: 40
14262494 AGGAGATATT
*
14262504 AAAAATTATTAAGGA-ATACTTAAAAAATATAAGAGAATACAA
1 AAAAATTATTAAGGAGATACCT-AAAAATA-AA-AGAATACAA
* * *
14262546 AAAAATTA-TGAGGAGATGCCTAAAAATAAATGAATAC-A
1 AAAAATTATTAAGGAGATACCTAAAAATAAAAGAATACAA
* *
14262584 AAAAATTA-TGAGGA-ATTACCAAAAAATAAA
1 AAAAATTATTAAGGAGA-TACCTAAAAATAAA
14262614 GGGGAGTACA
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
37 1 0.02
38 27 0.45
39 6 0.10
40 2 0.03
41 12 0.20
42 12 0.20
ACGTcount: A:0.60, C:0.06, G:0.12, T:0.22
Consensus pattern (40 bp):
AAAAATTATTAAGGAGATACCTAAAAATAAAAGAATACAA
Found at i:14262609 original size:38 final size:39
Alignment explanation
Indices: 14262538--14262613 Score: 111
Period size: 38 Copynumber: 2.0 Consensus size: 39
14262528 AAATATAAGA
* *
14262538 GAATACAAAAAAATTATGAGGAGATGCCTAAAAATAAAT
1 GAATACAAAAAAATTATGAGGAGATACCAAAAAATAAAT
14262577 GAATAC-AAAAAATTATGAGGA-ATTACCAAAAAATAAA
1 GAATACAAAAAAATTATGAGGAGA-TACCAAAAAATAAA
14262614 GGGGAGTACA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
37 1 0.03
38 27 0.79
39 6 0.18
ACGTcount: A:0.59, C:0.08, G:0.13, T:0.20
Consensus pattern (39 bp):
GAATACAAAAAAATTATGAGGAGATACCAAAAAATAAAT
Found at i:14262648 original size:21 final size:20
Alignment explanation
Indices: 14262610--14262648 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
14262600 TACCAAAAAA
*
14262610 TAAAGGGGAGTACAAAATCT
1 TAAAGGGGACTACAAAATCT
*
14262630 TAAAGAGGGACTACCAAAT
1 TAAAG-GGGACTACAAAAT
14262649 ATTATTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.46, C:0.13, G:0.23, T:0.18
Consensus pattern (20 bp):
TAAAGGGGACTACAAAATCT
Found at i:14265402 original size:15 final size:17
Alignment explanation
Indices: 14265367--14265402 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
14265357 AAATGAAGAG
14265367 ATAATTTATTTTAAAAT
1 ATAATTTATTTTAAAAT
14265384 ATAATTT-TTTTAAAA-
1 ATAATTTATTTTAAAAT
14265399 ATAA
1 ATAA
14265403 ATCAGTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 8 0.42
17 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATAATTTATTTTAAAAT
Found at i:14265726 original size:40 final size:42
Alignment explanation
Indices: 14265682--14265772 Score: 96
Period size: 48 Copynumber: 2.1 Consensus size: 42
14265672 GAATCTATGG
14265682 ATAAC-TCTA-ATTATAAATTATTTATACTAAAATTAACAAA
1 ATAACATCTATATTATAAATTATTTATACTAAAATTAACAAA
* *
14265722 ATAACATAATATTTATTATTATAAATTATTTATACTAAAATTAACATA
1 ATAAC-----ATCTA-TATTATAAATTATTTATACTAAAATTAACAAA
14265770 ATA
1 ATA
14265773 TTTGTACTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
40 5 0.12
46 3 0.07
48 33 0.80
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.41
Consensus pattern (42 bp):
ATAACATCTATATTATAAATTATTTATACTAAAATTAACAAA
Found at i:14268399 original size:24 final size:24
Alignment explanation
Indices: 14268367--14268416 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14268357 AGTAAAGATG
14268367 AGATCCAGATGATATTCGTAGCTA
1 AGATCCAGATGATATTCGTAGCTA
14268391 AGATCCAGATGATATTCGTAGCTA
1 AGATCCAGATGATATTCGTAGCTA
14268415 AG
1 AG
14268417 GATGGTAAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (24 bp):
AGATCCAGATGATATTCGTAGCTA
Found at i:14272805 original size:3 final size:3
Alignment explanation
Indices: 14272797--14272845 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
14272787 TAATATTAAT
* * *
14272797 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TTA TTG TTA GTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14272845 T
1 T
14272846 ATTTTTTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:14272962 original size:33 final size:33
Alignment explanation
Indices: 14272897--14272970 Score: 98
Period size: 33 Copynumber: 2.2 Consensus size: 33
14272887 AATTTTATTC
*
14272897 TATTATATACTATTATTTTAAGTTTTCTTATAT
1 TATTTTATACTATTATTTTAAGTTTTCTTATAT
*
14272930 TATTTTATATTATTA-TTTAA-TTTTCTAATATAT
1 TATTTTATACTATTATTTTAAGTTTTCT--TATAT
14272963 TATTTTAT
1 TATTTTAT
14272971 TAAACCAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
31 6 0.16
32 5 0.14
33 26 0.70
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (33 bp):
TATTTTATACTATTATTTTAAGTTTTCTTATAT
Found at i:14279655 original size:16 final size:17
Alignment explanation
Indices: 14279636--14279670 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
14279626 AGGAAGAAGC
14279636 TAAACAACAAGCT-ACA
1 TAAACAACAAGCTCACA
*
14279652 TAAACAACCAGCTCACA
1 TAAACAACAAGCTCACA
14279669 TA
1 TA
14279671 TCTGTGCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.51, C:0.29, G:0.06, T:0.14
Consensus pattern (17 bp):
TAAACAACAAGCTCACA
Found at i:14282476 original size:11 final size:11
Alignment explanation
Indices: 14282462--14282486 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14282452 TCGCTTATTG
14282462 AAAAATTATGT
1 AAAAATTATGT
14282473 AAAAATTATGT
1 AAAAATTATGT
14282484 AAA
1 AAA
14282487 GGCAATACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (11 bp):
AAAAATTATGT
Found at i:14286052 original size:44 final size:44
Alignment explanation
Indices: 14285972--14286919 Score: 455
Period size: 44 Copynumber: 21.9 Consensus size: 44
14285962 GGAAGATATG
* * * *
14285972 AATCTTATCTCCCTAAATTTGCAGTAGAGGAGATTAAATACAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
* * * **
14286016 AATCTTATCTCCCTGAAGTTACAGTGGAACAAATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
* * * *
14286060 AATCCTATCTTCCTGAAGTTGCAGTGGAGCGGGTTAAA-ATC-AT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATA-CAAT
* * * ** *
14286103 AGATCTTATCTCTCTAAAGTTGCAG-AGAGCAGATTGCATCCAAT
1 A-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
* * *
14286147 --T-TTATCTCCCTGAAGTTACAGTGGAGCAGACTAAATA-AACC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAA-T
* *
14286188 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-AACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAA-T
* * * * *
14286232 AATCTTATTTCCCTAAAATTACAGT-GAGGCGGATTGAAAT-CACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGA-GCAGATT-AAATACA-AT
* * * *** * *
14286276 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCATCCAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
* * * * * *
14286319 --T-TTATCTCCTTAAAGTTGCAGTGGAACAGACTGAATA-AAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
**
14286359 AATTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
* * * *
14286404 AAT-TCTATCTCCTTGAAGTTGTAGTGGAGCGGCTTAAA-ATCACA-
1 AATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATA-CA-AT
* * * * *
14286448 AATCTTATCTCTCTAAAGTTGCAG-AGAGCAGATCACAT-C--T
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
* * * * * * *
14286488 AGTTTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAATA-AACC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAA-T
* * *
14286532 AATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGA-AACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAA-T
* * * * *
14286576 AATCCTATCTCCCTGAAATTGCAGTGGGGCGGATTGAAAT-CACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAATACAAT
* * ** * * * *
14286620 GATCTTTTCTCTTTGAAGTTGTAG-AGAGCAGATCACAT-CAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAA-T
* * *
14286663 --T-TTATCTCCCTGAATTTGCAGTGGAGCAGATCGAAGAAAGC-A-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAA-ATA-CAAT
* * *
14286705 AATCTTATC-CCTCTGAAGTTACAGTTGG-GCAGGCTAAAGATGAC-A-
1 AATCTTATCTCC-CTGAAGTTGCAG-TGGAGCA-GATTAA-AT-ACAAT
* * **
14286750 AATTTTATCTCCCTGAAATT-CTAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGC-AGTGGAGCAGATTAAATACAAT
* * * * **
14286794 AATCCTATCTCTCTGAAGGTGCAATGGAGTGGATTAAAGTTAC-A-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA--TACAAT
* * **
14286838 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
* ** ** *
14286882 AATCCTATCTCCCTGGCGGGGCAGTGGAACAGATTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
14286920 GCTGCAATAG
Statistics
Matches: 669, Mismatches: 177, Indels: 116
0.70 0.18 0.12
Matches are distributed among these distances:
40 72 0.11
41 39 0.06
42 11 0.02
43 43 0.06
44 435 0.65
45 59 0.09
46 10 0.01
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATACAAT
Found at i:14286284 original size:172 final size:171
Alignment explanation
Indices: 14285976--14286692 Score: 875
Period size: 172 Copynumber: 4.2 Consensus size: 171
14285966 GATATGAATC
* * * * * *
14285976 TTATCTCCCTAAATTTGCAGTAGAGGAGATTAAATACAATAATCTTATCTCCCTGAAGTTACAGT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAATA-AACAATCTTATCTCCCTGAAGTTGCAGT
* * * * * * *
14286041 GGAACAAATTAAAGCCAATAATCCTATCTTCCTGAAGTTGCAGTGGAGCGGGTTAAAATCATAGA
65 GGAGCAGATTAAAGCAAATAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAATCACAGA
**
14286106 TCTTATCTCTCTAAAGTTGCAGAGAGCAGATTGCATCCAATT
130 TCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCCAATT
* *
14286148 TTATCTCCCTGAAGTTACAGTGGAGCAGACTAAATAAACCAATCTTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAATAAA-CAATCTTATCTCCCTGAAGTTGCAGT
* * * * * *
14286213 GGAGCAGATTGAAG-AAACTAATCTTATTTCCCTAAAATTACAGT-GAGGCGGATTGAAATCACA
65 GGAGCAGATTAAAGCAAA-TAATCCTATCTCCCTGAAATTGCAGTGGA-GCGGATTAAAATCACA
* * *
14286276 GATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCCAGTT
128 GATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCCAATT
* * *
14286320 TTATCTCCTTAAAGTTGCAGTGGAACAGACTGAATAAACAATTCTTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAATAAACAA-TCTTATCTCCCTGAAGTTGCAGT
* * * * * * *
14286385 GGAGCAGATTAAAGCCAATAATTCTATCTCCTTGAAGTTGTAGTGGAGCGGCTTAAAATCACAAA
65 GGAGCAGATTAAAGCAAATAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAATCACAGA
* *
14286450 TCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCTAGTT
130 TCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCCAATT
* * *
14286492 TTATCTCCCTAAAGTTACAGTGGAGCAGACTGAATAAACCAATCTTATCTCCTTGAAGTTGCAGT
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAATAAA-CAATCTTATCTCCCTGAAGTTGCAGT
* * * *
14286557 GGAGCAGATTGAAG-AAACTAATCCTATCTCCCTGAAATTGCAGTGGGGCGGATTGAAATCACTG
65 GGAGCAGATTAAAGCAAA-TAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAATCACAG
* * * *
14286621 ATCTTTTCTCTTTGAAGTTGTAGAGAGCAGATCACAT-CAAGTT
129 ATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCCAA-TT
* *
14286664 TTATCTCCCTGAATTTGCAGTGGAGCAGA
1 TTATCTCCCTAAAGTTGCAGTGGAGCAGA
14286693 TCGAAGAAAG
Statistics
Matches: 467, Mismatches: 69, Indels: 18
0.84 0.12 0.03
Matches are distributed among these distances:
171 12 0.03
172 448 0.96
173 7 0.01
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (171 bp):
TTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAATAAACAATCTTATCTCCCTGAAGTTGCAGTG
GAGCAGATTAAAGCAAATAATCCTATCTCCCTGAAATTGCAGTGGAGCGGATTAAAATCACAGAT
CTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCCAATT
Found at i:14286609 original size:344 final size:345
Alignment explanation
Indices: 14286016--14286729 Score: 1085
Period size: 344 Copynumber: 2.1 Consensus size: 345
14286006 TAAATACAAT
14286016 AATCTTATCTCCCTGAAGTTACAGTGGAACAAATTAAAGCCAATAATCCTATCTTCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAAATTAAAGCCAATAATCCTATCTTCCTGAAGTTG
* * * **
14286081 CAGTGGAGCGGGTTAAAATCATAGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATTGCATCCAA
66 CAGTGGAGCGGCTTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCCAA
*
14286146 TTTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAATAAACCAATCTTATCTCCCTGAAGTTGCA
131 TTTTATCTCCCTAAAGTTACAGTGGAGCAGACTAAATAAACCAATCTTATCTCCCTGAAGTTGCA
* *
14286211 GTGGAGCAGATTGAAGAAACTAATCTTATTTCCCTAAAATTACAGTGAGGCGGATTGAAATCACA
196 GTGGAGCAGATTGAAGAAACTAATCCTATCTCCCTAAAATTACAGTGAGGCGGATTGAAATCACA
* * *
14286276 GATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCCAGTTTTATCTCCTTAAAGTTGCAGT
261 GATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCAAGTTTTATCTCCCTAAAGTTGCAGT
*
14286341 GGAACAGA-CTGAATAAA-CA
326 GGAACAGATC-GAAGAAAGCA
* * * * *
14286360 ATTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATTCTATC-TCCTTGAAGTT
1 AATCTTATCTCCCTGAAGTTACAGTGGAACAAATTAAAGCCAATAATCCTATCTTCC-TGAAGTT
* *
14286424 GTAGTGGAGCGGCTTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCTA
65 GCAGTGGAGCGGCTTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCCA
* * *
14286489 GTTTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAATAAACCAATCTTATCTCCTTGAAGTTGC
130 ATTTTATCTCCCTAAAGTTACAGTGGAGCAGACTAAATAAACCAATCTTATCTCCCTGAAGTTGC
* * *
14286554 AGTGGAGCAGATTGAAGAAACTAATCCTATCTCCCTGAAATTGCAGTGGGGCGGATTGAAATCAC
195 AGTGGAGCAGATTGAAGAAACTAATCCTATCTCCCTAAAATTACAGTGAGGCGGATTGAAATCAC
* * * * * *
14286619 TGATCTTTTCTCTTTGAAGTTGTAGAGAGCAGATCACATCAAGTTTTATCTCCCTGAATTTGCAG
260 AGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCAAGTTTTATCTCCCTAAAGTTGCAG
*
14286684 TGGAGCAGATCGAAGAAAGCA
325 TGGAACAGATCGAAGAAAGCA
14286705 AATCTTATC-CCTCTGAAGTTACAGT
1 AATCTTATCTCC-CTGAAGTTACAGT
14286730 TGGGCAGGCT
Statistics
Matches: 332, Mismatches: 34, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
343 3 0.01
344 306 0.92
345 23 0.07
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (345 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAACAAATTAAAGCCAATAATCCTATCTTCCTGAAGTTG
CAGTGGAGCGGCTTAAAATCACAAATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCACATCCAA
TTTTATCTCCCTAAAGTTACAGTGGAGCAGACTAAATAAACCAATCTTATCTCCCTGAAGTTGCA
GTGGAGCAGATTGAAGAAACTAATCCTATCTCCCTAAAATTACAGTGAGGCGGATTGAAATCACA
GATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCACATCAAGTTTTATCTCCCTAAAGTTGCAGT
GGAACAGATCGAAGAAAGCA
Found at i:14286788 original size:45 final size:45
Alignment explanation
Indices: 14286662--14286788 Score: 109
Period size: 45 Copynumber: 2.8 Consensus size: 45
14286652 TCACATCAAG
* * **
14286662 TTTTATCTCCCTGAATTTGCAGTGGAGCAGATCGAAGAAAGCAAA
1 TTTTATCTCCCTGAAATTACAGTGGAGCAGATTAAAGAAAGCAAA
* * ** *
14286707 TCTTATC-CCTCTGAAGTTACAGTTGG-GCAGGCTAAAG-ATGACAAA
1 TTTTATCTCC-CTGAAATTACAG-TGGAGCAGATTAAAGAAAG-CAAA
14286752 TTTTATCTCCCTGAAATT-CTAGTGGAGCAGATTAAAG
1 TTTTATCTCCCTGAAATTAC-AGTGGAGCAGATTAAAG
14286789 CCAATAATCC
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
44 8 0.12
45 51 0.80
46 5 0.08
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (45 bp):
TTTTATCTCCCTGAAATTACAGTGGAGCAGATTAAAGAAAGCAAA
Found at i:14288291 original size:3 final size:3
Alignment explanation
Indices: 14288278--14288333 Score: 76
Period size: 3 Copynumber: 18.3 Consensus size: 3
14288268 ATTGGTTTAA
* *
14288278 TAT TAAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAG TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
14288324 TTT TAT TAT T
1 TAT TAT TAT T
14288334 TATATATCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14291126 original size:18 final size:18
Alignment explanation
Indices: 14291071--14291138 Score: 73
Period size: 18 Copynumber: 3.6 Consensus size: 18
14291061 TTTTAAAAAA
14291071 TATATAATTGTTAATTTAAT
1 TATA-AATT-TTAATTTAAT
* *
14291091 TCTAAATTATTTATTTTAAT
1 TATAAA-T-TTTAATTTAAT
*
14291111 TATAAATTTTAATTTAAA
1 TATAAATTTTAATTTAAT
14291129 TATAAATTTT
1 TATAAATTTT
14291139 TTAGGTATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
18 19 0.46
19 3 0.07
20 18 0.44
21 1 0.02
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (18 bp):
TATAAATTTTAATTTAAT
Found at i:14292173 original size:22 final size:22
Alignment explanation
Indices: 14292147--14292205 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
14292137 AATATTAGAT
*
14292147 ATATATATAATAGTATAAAAAA
1 ATATATATAATAATATAAAAAA
* *
14292169 ATATA-ACTAATAATATTAAAAT
1 ATATATA-TAATAATATAAAAAA
14292191 ATATCATATATATAA
1 ATAT-ATATA-ATAA
14292206 AATATAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 1 0.03
22 21 0.70
23 3 0.10
24 5 0.17
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (22 bp):
ATATATATAATAATATAAAAAA
Found at i:14292534 original size:23 final size:23
Alignment explanation
Indices: 14292480--14292540 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 23
14292470 TAATCATTAG
*
14292480 TAGTAATAATACTTTA-AAAATAA
1 TAGTAATAATA-TTAATAAAATAA
14292503 T--TAAT-ATATTAATAAAATAA
1 TAGTAATAATATTAATAAAATAA
14292523 TAGTAATAATATTAATAA
1 TAGTAATAATATTAATAA
14292541 TATGTAAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
19 3 0.09
20 11 0.33
21 4 0.12
22 4 0.12
23 11 0.33
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (23 bp):
TAGTAATAATATTAATAAAATAA
Found at i:14294427 original size:72 final size:72
Alignment explanation
Indices: 14294207--14295001 Score: 420
Period size: 73 Copynumber: 10.5 Consensus size: 72
14294197 GCATGTGATC
* * * * *
14294207 TCTCGCAATATGAATTGATTTTTTTGACAACAAAAATTGAAATTACCTCAACGTGTCCTGAGGCT
1 TCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCT
14294272 CAACTCATT
64 CAACTCATT
*
14294281 TCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
14294346 AACTCATT
65 AACTCATT
* *
14294354 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCGATGTGTCTTGAGGCTCA
1 TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
14294419 ACTCATT
66 ACTCATT
* * * * ** ** * ** ** *
14294426 TCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAATGAAAACAGAAATGGAAAATACCTCG-
1 TCTCGCAATATGAGTTGAAT-TTT-GAAAACAGAA-ATTG-AAA-TTACCT-CAACGTGTCTTGA
* * *
14294490 GTG-TGACCTGAGGCTT
60 G-GCTCAACTCA---TT
* * * * * * ** * *** ** * * *
14294506 AACTCAC-CTCTCGCAATATG-A-GTTGAAATTAAAACACAAAAATTGA--AAATACCTCGGCGT
1 -TCTCGCAATAT-G-AGT-TGAATTTTGAAAACAGAA-ATTGAAATT-ACCTCA-ACGT-GTCTT
* * * * *
14294566 GTGTCCTGAGGCTCAACTCACC
58 GAG-GCTCA-ACTC-A-T---T
*
14294588 TCTCGCAATATGAGTT-AATTTTTGAAAAACATAAATTGAACAGGAATTGAAAATACCTCAACGT
1 TCTCGCAATATGAGTTGAA-TTTTG-AAAAC----A--G---A--AATTGAAATTACCTCAACGT
* **
14294652 GTCTTGAGGCGCAACTCACC
53 GTCTTGAGGCTCAACTCATT
* * *
14294672 TCTCGCAATATGAGTTGATTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCT
1 TCTCGCAATATGAGTTGAATT-TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCTTGAGGCT
**
14294737 CAACTCACC
64 CAACTCATT
* * * * *
14294746 TCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCT
1 TCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCT
*
14294811 TAACTCATT
64 CAACTCATT
* * * *
14294820 TCTCGCAATATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTG-AATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
14294885 AACTCATT
65 AACTCATT
* * * * *
14294893 TCTCGCAATATGAGTTGATTTTTTTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
1 TCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
**
14294958 AACTCACC
65 AACTCATT
* *
14294966 TCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT
1 TCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
14295002 AAAAGGCTTA
Statistics
Matches: 560, Mismatches: 110, Indels: 104
0.72 0.14 0.13
Matches are distributed among these distances:
71 4 0.01
72 79 0.14
73 200 0.36
74 134 0.24
75 11 0.02
76 9 0.02
77 10 0.02
78 12 0.02
79 15 0.03
80 10 0.02
81 15 0.03
82 7 0.01
83 2 0.00
84 23 0.04
85 5 0.01
86 1 0.00
88 1 0.00
89 3 0.01
90 2 0.00
91 7 0.01
92 8 0.01
93 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (72 bp):
TCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCA
ACTCATT
Found at i:14294721 original size:74 final size:73
Alignment explanation
Indices: 14294626--14294987 Score: 490
Period size: 73 Copynumber: 4.9 Consensus size: 73
14294616 ACATAAATTG
* * * * *
14294626 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCGCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
14294691 TTCTTGAA
66 TTTTTGAA
* ** *
14294699 AAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
*
14294764 TTTTTTTGAC
65 -TTTTTTGAA
* * ** *
14294774 AACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTTAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
14294839 ATTTGGAA
66 TTTTTGAA
* **
14294847 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
14294912 TTTTTTAC
66 TTTTTGAA
*
14294920 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
14294985 TTT
66 TTT
14294988 GAAAAACAAA
Statistics
Matches: 258, Mismatches: 29, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
73 136 0.53
74 113 0.44
75 9 0.03
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31
Consensus pattern (73 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGAA
Found at i:14294736 original size:232 final size:218
Alignment explanation
Indices: 14294464--14295005 Score: 613
Period size: 232 Copynumber: 2.4 Consensus size: 218
14294454 AACATAATAA
* * * *
14294464 TGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
** *
14294529 TGAAATTAAAACACAAAAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGC
66 TGATTTTAAAACACAAAAATTGAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGC
* *
14294594 AATATGAGTT-AATTTTTGAAAAACATAAATTGAACAGGAATTGAAAATACCTCAACGTGTCTTG
129 AATATGAGTTGAA-ATTTGAAAAAC--------AA-A--AATTGAAAATACCTCAACGTGTCCTG
14294658 AGGCGCAACTCACCTCTCGCAATATGAGTTGATTTCT
182 AGGCGCAACTCACCTCTCGCAATATGAGTTGATTTCT
* *
14294695 TGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TGAAAA-CAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*** * * * * **
14294760 TTGATTTTTTTGACAACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTTAACTCATTTCTCG
65 TTGA-TTTTAAAAC-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
* * * *
14294825 CAATATGAGTTGAAATTTGGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
128 CAATATGAGTTGAAATTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCGCAACTC
** *
14294890 ATTTCTCGCAATATGAGTTGATTTTT
193 ACCTCTCGCAATATGAGTTGATTTCT
* * * * *
14294916 TTACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGT
1 TGAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
14294981 TGATTTTGAAAA-ACAAAAATT-AAAA
66 TGATTTT-AAAACACAAAAATTGAAAA
14295006 GGCTTAACTC
Statistics
Matches: 267, Mismatches: 39, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
217 3 0.01
218 8 0.03
219 4 0.01
220 58 0.22
221 60 0.22
223 1 0.00
224 2 0.01
231 6 0.02
232 100 0.37
233 6 0.02
234 19 0.07
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (218 bp):
TGAAAACAGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGAAATTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCGCAACTCACC
TCTCGCAATATGAGTTGATTTCT
Found at i:14294979 original size:146 final size:146
Alignment explanation
Indices: 14294626--14295005 Score: 539
Period size: 147 Copynumber: 2.6 Consensus size: 146
14294616 ACATAAATTG
* * * * *
14294626 AACAGGAATTGAAAATACCTCAACGTGTCTTGAGGCGCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * *
14294691 TTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
66 TT-TGGAAAA-CAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
14294756 TGAGTTGATTTTTTTGAC
129 TGAGTTGATTTTTTTGAC
* * **
14294774 AACAGAAATTGAAATTACCTTAGCGTGTCCTGAGGCTTAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-A
* * * **
14294839 ATTTGGAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAT
65 TTTTGGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATAT
14294904 GAGTTGATTTTTTT-AC
130 GAGTTGATTTTTTTGAC
*
14294920 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
14294985 TTTGAAAAACAAAAATT-AAAA
66 TTTGGAAAACAAAAATTGAAAA
14295006 GGCTTAACTC
Statistics
Matches: 205, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
144 3 0.01
145 17 0.08
146 60 0.29
147 62 0.30
148 60 0.29
149 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (146 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTGGAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTTGAC
Done.