Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 50 of 211
Found at i:14946855 original size:133 final size:134
Alignment explanation
Indices: 14946698--14947486 Score: 419
Period size: 133 Copynumber: 5.9 Consensus size: 134
14946688 TATCTCCCTA
*
14946698 AAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCAGACT-
1 AAGTTGCAGTGGAGCAAGTTGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTA
* *
14946762 GATGATAGCAAATCTTATCTTTCTGGAGTTGCAATAGAGTAGATTAAAGCTATAAACCCTATTAC
66 GATGATAGCAAATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCCTATTAC
14946827 ATTG
131 ATTG
* * * * *
14946831 AAGTTGCAATGG-GACAAGTTGAAGTTATAAGTCTTATCTTCTTGAAGTTGCAGTGGAGCAGACT
1 AAGTTGCAGTGGAG-CAAGTTGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCAGACT
* * * * * ** *
14946895 GGA-GATAGCGAATCTTAT-TTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTATAAAATTACAG
65 AGATGATAGCAAATCTTATCTT-TCTGAAGTTGCAGTAGAGTAGATTAAAGCTAT--AA--AC-C
* * *
14946958 ATCTTATCTCTCTG
124 CTATTA-C-AT-TG
* * * ** * * *
14946972 AAGTTGCAGTAGAGC-AGAT-CA--TATCAAACCTTATATCTCTGAAGTTA-CAGTGGAGCAG-G
1 AAGTTGCAGTGGAGCAAGTTGAAGTTA-CAAGTCTTATCTCCCTGAAG-TAGCAGTGGAGCAGAC
* * * * * ** * * * * * * * ** ***
14947031 TTGAAGTTA-CTAGTCTTATCTCGCTAAAGTTGTAGTGGAGTAAACTGAAGATAGCGAATTTTAT
64 TAGATGATAGCAAATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATTAAAGCTA-TAAACCCTAT
* ** *
14947095 TTCCCTA
128 TACATTG
* ** * * * *** * * * *
14947102 AAGTTGCAGTGAAGCAAACTGAAGATAGCAAATCTTATTTATATGAAGTTGTAGTGGAACAGATT
1 AAGTTGCAGTGGAGCAAGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCAGACT
* ** * ** * * **
14947167 AAAGCTATAAATTTCAGATCTTATCTTTCTGAAGTTGCAGTAGAACAGATCATA---ATAAACTT
65 --AG--AT-GATAGCAAATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCC
* * *
14947229 TATCTGC-CTA
125 TAT-TACATTG
* *
14947239 AAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCATACT-
1 AAGTTGCAGTGGAGCAAGTTGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTA
* *
14947303 GATGATAGCAAATCTTATCTCTCTGAAGTTGCAATAGAGTAGATTAAAGCTATAAACCCTATTAC
66 GATGATAGCAAATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCCTATTAC
14947368 ATTG
131 ATTG
* * * *
14947372 AAGTTACAATGG-GACAAGTTGAAGTTACAAGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACT
1 AAGTTGCAGTGGAG-CAAGTTGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCAGACT
* ** * * * * * *
14947436 GGA-GATAGCGGATCTTAT-TTCCAGAGGTTGTAGTGGAATAGATTAAAGCTA
65 AGATGATAGCAAATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATTAAAGCTA
14947487 CAAGTTACAA
Statistics
Matches: 483, Mismatches: 137, Indels: 73
0.70 0.20 0.11
Matches are distributed among these distances:
130 49 0.10
131 5 0.01
132 33 0.07
133 179 0.37
134 32 0.07
135 3 0.01
136 28 0.06
137 71 0.15
138 35 0.07
139 4 0.01
140 5 0.01
141 38 0.08
142 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.31
Consensus pattern (134 bp):
AAGTTGCAGTGGAGCAAGTTGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTA
GATGATAGCAAATCTTATCTTTCTGAAGTTGCAGTAGAGTAGATTAAAGCTATAAACCCTATTAC
ATTG
Found at i:14947109 original size:315 final size:314
Alignment explanation
Indices: 14946534--14947109 Score: 839
Period size: 315 Copynumber: 1.8 Consensus size: 314
14946524 AGTGGAGCAG
* *
14946534 GTTGAAGCTACAAGTCTTATCTTCCTGAAGTTATAGTGGAGCAGACTAGAGATAATGAACCTTAT
1 GTTGAAGCTACAAGTCTTATCTTCCTGAAGTTACAGTGGAGCAGACTAGAGATAACGAACCTTAT
*
14946599 TTCCCTAAAGTTGCAGTGGAATAAATTAAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGC
66 TTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGC
* * *
14946664 AGTAGAGCATATCATAGCAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAG
131 AGTAGAGCAGATCATAGCAAACCTTATATCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAAG
* * * * **
14946729 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGACTGATGATAGCAAATCTTATCTTTCTGGAGTTGC
196 TCTTATCTCCCTAAAGTAGCAGTGGAGCAAACTGAAGATAGCAAATCTTATCTTCCTAAAGTTGC
14946794 AATAGAGTAGATTAAAGCTATAAACCCTATTACATTGAAGTTGCAATGGGACAA
261 AATAGAGTAGATTAAAGCTATAAACCCTATTACATTGAAGTTGCAATGGGACAA
* * * * * * *
14946848 GTTGAAGTTATAAGTCTTATCTTCTTGAAGTTGCAGTGGAGCAGACTGGAGATAGCGAATCTTAT
1 GTTGAAGCTACAAGTCTTATCTTCCTGAAGTTACAGTGGAGCAGACTAGAGATAACGAACCTTAT
* * *
14946913 TTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTATAAAATTACAGATCTTATCTCTCTGAAGTTG
66 TTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTAT-AAATTACAGATCTTATCTCTCTGAAGTTG
* * * *
14946978 CAGTAGAGCAGATCATATCAAACCTTATATCTCTGAAGTTACAGTGGAGCAGGTTGAAGTTACTA
130 CAGTAGAGCAGATCATAGCAAACCTTATATCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAA
* * * * * *
14947043 GTCTTATCTCGCTAAAGTTGTAGTGGAGTAAACTGAAGATAGCGAATTTTAT-TTCCCTAAAGTT
195 GTCTTATCTCCCTAAAGTAGCAGTGGAGCAAACTGAAGATAGCAAATCTTATCTT-CCTAAAGTT
14947107 GCA
259 GCA
14947110 GTGAAGCAAA
Statistics
Matches: 228, Mismatches: 32, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
314 89 0.39
315 139 0.61
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (314 bp):
GTTGAAGCTACAAGTCTTATCTTCCTGAAGTTACAGTGGAGCAGACTAGAGATAACGAACCTTAT
TTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTATAAATTACAGATCTTATCTCTCTGAAGTTGC
AGTAGAGCAGATCATAGCAAACCTTATATCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAAG
TCTTATCTCCCTAAAGTAGCAGTGGAGCAAACTGAAGATAGCAAATCTTATCTTCCTAAAGTTGC
AATAGAGTAGATTAAAGCTATAAACCCTATTACATTGAAGTTGCAATGGGACAA
Found at i:14947121 original size:45 final size:45
Alignment explanation
Indices: 14947044--14947141 Score: 133
Period size: 45 Copynumber: 2.2 Consensus size: 45
14947034 AAGTTACTAG
* * * * * *
14947044 TCTTATCTCGCTAAAGTTGTAGTGGAGTAAACTGAAGATAGCGAA
1 TCTTATTTCCCTAAAGTTGCAGTGAAGCAAACTGAAGATAGCAAA
*
14947089 TTTTATTTCCCTAAAGTTGCAGTGAAGCAAACTGAAGATAGCAAA
1 TCTTATTTCCCTAAAGTTGCAGTGAAGCAAACTGAAGATAGCAAA
14947134 TCTTATTT
1 TCTTATTT
14947142 ATATGAAGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (45 bp):
TCTTATTTCCCTAAAGTTGCAGTGAAGCAAACTGAAGATAGCAAA
Found at i:14947151 original size:45 final size:45
Alignment explanation
Indices: 14947055--14947157 Score: 125
Period size: 45 Copynumber: 2.3 Consensus size: 45
14947045 CTTATCTCGC
* * * * * *
14947055 TAAAGTTGTAGTGGAGTAAACTGAAGATAGCGAATTTTATTTCCC
1 TAAAGTTGTAGTGAAGCAAACTGAAGATAGCAAATCTTATTTACA
* *
14947100 TAAAGTTGCAGTGAAGCAAACTGAAGATAGCAAATCTTATTTATA
1 TAAAGTTGTAGTGAAGCAAACTGAAGATAGCAAATCTTATTTACA
*
14947145 TGAAGTTGTAGTG
1 TAAAGTTGTAGTG
14947158 GAACAGATTA
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (45 bp):
TAAAGTTGTAGTGAAGCAAACTGAAGATAGCAAATCTTATTTACA
Found at i:14947274 original size:226 final size:227
Alignment explanation
Indices: 14946875--14947335 Score: 642
Period size: 226 Copynumber: 2.0 Consensus size: 227
14946865 TATCTTCTTG
* * * * * *
14946875 AAGTTGCAGTGGAGCAGACTGGAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATT
1 AAGTTGCAGTGAAGCAAACTGAAGATAGCAAATCTTATTTACATGAAGTTGTAGTGGAACAGATT
*
14946940 AAAGCTATAAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATCAAACCTTA
66 AAAGCTATAAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCATATCAAACCTTA
* * * * *
14947005 TATCTCTGAAGTTACAGTGGAGCAGGTTGAAGTTACTAGTCTTATCTCGCTAAAGTTGTAGTGGA
131 TATCTCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTAGCAGTGGA
* * * *
14947070 GTAAACTGAAGATAGCGAATTTTATTTCCCTA
196 GCAAACTGAAGATAGCAAATCTTATCTCCCTA
*
14947102 AAGTTGCAGTGAAGCAAACTGAAGATAGCAAATCTTATTTATATGAAGTTGTAGTGGAACAGATT
1 AAGTTGCAGTGAAGCAAACTGAAGATAGCAAATCTTATTTACATGAAGTTGTAGTGGAACAGATT
* *
14947167 AAAGCTAT-AAATTTCAGATCTTATCTTTCTGAAGTTGCAGTAGAACAGATCATAAT-AAA-CTT
66 AAAGCTATAAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCAT-ATCAAACCTT
* *
14947229 -TATCTGCCTAAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTAGCAGT
130 ATATCT--CTAAAGTTACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTAGCAGT
* * * *
14947293 GGAGCATACTGATGATAGCAAATCTTATCTCTCTG
193 GGAGCAAACTGAAGATAGCAAATCTTATCTCCCTA
14947328 AAGTTGCA
1 AAGTTGCA
14947336 ATAGAGTAGA
Statistics
Matches: 206, Mismatches: 25, Indels: 7
0.87 0.11 0.03
Matches are distributed among these distances:
224 5 0.02
225 3 0.01
226 130 0.63
227 68 0.33
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (227 bp):
AAGTTGCAGTGAAGCAAACTGAAGATAGCAAATCTTATTTACATGAAGTTGTAGTGGAACAGATT
AAAGCTATAAAATTACAGATCTTATCTCTCTGAAGTTGCAGTAGAACAGATCATATCAAACCTTA
TATCTCTAAAGTTACAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTAGCAGTGGA
GCAAACTGAAGATAGCAAATCTTATCTCCCTA
Found at i:14947517 original size:23 final size:23
Alignment explanation
Indices: 14947487--14947541 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
14947477 ATTAAAGCTA
14947487 CAAGTTACAAGTCTTATCTCCCT
1 CAAGTTACAAGTCTTATCTCCCT
14947510 CAAGTTACAAGTCTTATCTCCCT
1 CAAGTTACAAGTCTTATCTCCCT
*
14947533 AAAGTTACA
1 CAAGTTACA
14947542 GTGGAGCAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.33
Consensus pattern (23 bp):
CAAGTTACAAGTCTTATCTCCCT
Found at i:14950190 original size:45 final size:44
Alignment explanation
Indices: 14950094--14950922 Score: 439
Period size: 44 Copynumber: 18.5 Consensus size: 44
14950084 GATCTTGTAC
* * *
14950094 CCCTAAAGTTGCAGTGG-GATAGATTGAAGATCATAGCAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAG-CAGATTGAAG---ATAGC-AATCTTATCT
* * *
14950142 CCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
* * *
14950187 CCCTGAAGTTGCAGTGGAACAGATTAAAGCCATAAATCACAGATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A--GCA-ATCTTATCT
* * * * *
14950238 CTCTGAAGTTGCAGTAGAGCAGA-TCATA-TTA--AACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGA-AGATAGCAATCTTATCT
* ** * * * *
14950279 CCCTGAAGTTGCAGTAGAATAGGTTAAAAATAAACCAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT--AGCAATCTTATCT
* * * *
14950325 CTCTGAAGTTGCAATAGAGCAGA-T---CATAGCAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
* *
14950366 CCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA-CAAGTCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA-TCTTATCT
* * *
14950410 CCTTGAAGTTGCAGTGGAGCAGACTGAAGATAACCAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-AGCAATCTTATCT
* * * *
14950455 CCCTAAAGTTGCAGTGGAACAAATTGAAGACAGGCTACAAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATA-G---C-AATCTTATCT
* * * *
14950504 CCTTGAAGTTGTAGTGGAGCAGATTAAAGCCATA--AACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--ATAGCAATCTTATCT
* *
14950548 CACTGAAGTTGCAGTGGAGC--A--G--G-TTGC---CTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCTTATCT
* * *
14950582 CCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCGAATCTTATTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
* * * *
14950627 CCCTGAAGTTGCAGTGGAACAAATTAAAGCTATAAATCACATATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAG--AT--A--GCA-ATCTTATCT
** * * * * * *
14950678 CTTTGAAGTTGAAGTGGAACAGGTTAAAAATAAATCAATCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGAT--AGCAATCTTATCT
* * ** ** *
14950724 CCCTGAAGTTGCAATAGAGCAGATTGAAGACGGGCTACAAATTTTCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAGC-A-ATCTTATCT
* * * ** *
14950771 CCCTGAAGTTGTAGTTGAGCAGATTAAAGCCA-CAAACCTTATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
* * *
14950815 CCCTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTA-CTT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCTTATC-T
* * *
14950859 CCCTGAAGTTACAGTGGAGCAGATTGAAGCTA-CTAATCTCATCT
1 CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGC-AATCTTATCT
14950903 CCCTGAAGTTGCAGTGGAGC
1 CCCTGAAGTTGCAGTGGAGC
14950923 GAATTAAAAC
Statistics
Matches: 605, Mismatches: 119, Indels: 118
0.72 0.14 0.14
Matches are distributed among these distances:
34 26 0.04
35 1 0.00
36 1 0.00
38 1 0.00
40 3 0.00
41 60 0.10
42 8 0.01
43 4 0.01
44 156 0.26
45 112 0.19
46 62 0.10
47 37 0.06
48 25 0.04
49 41 0.07
50 4 0.01
51 64 0.11
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
CCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAATCTTATCT
Found at i:14950288 original size:41 final size:42
Alignment explanation
Indices: 14950231--14950432 Score: 149
Period size: 41 Copynumber: 4.7 Consensus size: 42
14950221 AATCACAGAT
*
14950231 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATTAAA-C
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATATTAAACC
** * * * *
14950272 CTTATCTCCCTGAAGTTGCAGTAGAATAGGTTAAAAATAAACC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCA-GATCATATTAAACC
* * ** *
14950315 AATCTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGCAAA-T
1 ---CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATATTAAACC
* * * **
14950359 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGA-AGTTACAAGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCA-GATCATA-TTA-AACC
* *
14950403 CTTATCTCCTTGAAGTTGCAGTGGAGCAGA
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGA
14950433 CTGAAGATAA
Statistics
Matches: 126, Mismatches: 26, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
41 51 0.40
42 12 0.10
43 4 0.03
44 28 0.22
45 7 0.06
46 24 0.19
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (42 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGATCATATTAAACC
Found at i:14950390 original size:87 final size:87
Alignment explanation
Indices: 14950135--14950475 Score: 312
Period size: 87 Copynumber: 3.8 Consensus size: 87
14950125 CATAGCAAAC
* * * * * *
14950135 CTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAAATCTTATCTCCCTGAAGTTGCA
* *
14950200 GTGGAACAGATTAAAGCCATAAATCACAGAT
62 GTGGAACAGGTTAAA--AATAAA-C-CA-AT
** * *
14950231 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATATTAAACCTTATCTCCCTGAAGTTGCAGTAG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAATCTTATCTCCCTGAAGTTGCAGTGG
*
14950296 AATAGGTTAAAAATAAACCAAT
66 AACAGGTTAAAAATAAACCAAT
*
14950318 CTTATCTCTCTGAAGTTGCAATAGAGCAGATCATAGCAAATCTTATCTCCCTGAAGTTGCAGTGG
1 CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAATCTTATCTCCCTGAAGTTGCAGTGG
* * * *
14950383 AGCAGGTT-GAAGT-TA-CAAGT
66 AACAGGTTAAAAATAAACCAA-T
* * * * *
14950403 CTTATCTC-CTTGAAGTTGCAGTGGAGCAGACTGAAGATAACCAATCTTATCTCCCTAAAGTTGC
1 CTTATCTCTC-TGAAGTTGCAGTAGAGCAGA-T---CATAGCAAATCTTATCTCCCTGAAGTTGC
14950467 AGTGGAACA
61 AGTGGAACA
14950476 AATTGAAGAC
Statistics
Matches: 209, Mismatches: 30, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
84 4 0.02
85 28 0.13
86 4 0.02
87 68 0.33
88 2 0.01
89 34 0.16
90 5 0.02
92 36 0.17
95 1 0.00
96 27 0.13
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (87 bp):
CTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAATCTTATCTCCCTGAAGTTGCAGTGG
AACAGGTTAAAAATAAACCAAT
Found at i:14953654 original size:44 final size:44
Alignment explanation
Indices: 14953606--14953721 Score: 151
Period size: 44 Copynumber: 2.6 Consensus size: 44
14953596 AAATTACGAG
* *
14953606 TCTTATCTCCCTGAATTTGCAGTGGAGCAGACTGAAGATACCAA
1 TCTTATCTCCCTGAAATTGTAGTGGAGCAGACTGAAGATACCAA
* * * **
14953650 TCTTATCTCCTTGAAATTGTAGTGGAGCAGATTGAAGCTATTAA
1 TCTTATCTCCCTGAAATTGTAGTGGAGCAGACTGAAGATACCAA
* *
14953694 TCCTATCTCCCTGAAGTTGTAGTGGAGC
1 TCTTATCTCCCTGAAATTGTAGTGGAGC
14953722 GGATTAAAAC
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 62 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (44 bp):
TCTTATCTCCCTGAAATTGTAGTGGAGCAGACTGAAGATACCAA
Found at i:14955612 original size:5 final size:5
Alignment explanation
Indices: 14955602--14955634 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
14955592 TTTTGGCTCG
14955602 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
14955635 CGTTCTTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:14959909 original size:20 final size:20
Alignment explanation
Indices: 14959884--14959921 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14959874 AAAAAAGCAC
* *
14959884 AAAATTTAAGTTAATTTACT
1 AAAATTAAACTTAATTTACT
14959904 AAAATTAAACTTAATTTA
1 AAAATTAAACTTAATTTA
14959922 ACATAATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (20 bp):
AAAATTAAACTTAATTTACT
Found at i:14961482 original size:34 final size:34
Alignment explanation
Indices: 14961438--14961574 Score: 136
Period size: 34 Copynumber: 4.1 Consensus size: 34
14961428 TGTTAAACAA
* *
14961438 GTTTAGTGCTACTATAATGATCTATTATAAGCAT
1 GTTTATTGCTACCATAATGATCTATTATAAGCAT
* *
14961472 GTTTATTGCTACCATATTGATCTACTATAAGCAT
1 GTTTATTGCTACCATAATGATCTATTATAAGCAT
* * ** *
14961506 GATAATTTTTACTAT-ATCGA-CTTATTATAAGCAT
1 GTTTATTGCTACCATAAT-GATC-TATTATAAGCAT
* *
14961540 G-TTATTGCTACCATATTGATCTGTTATAAGCAT
1 GTTTATTGCTACCATAATGATCTATTATAAGCAT
14961573 GT
1 GT
14961575 CATGTTGCAT
Statistics
Matches: 81, Mismatches: 17, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
33 25 0.31
34 56 0.69
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (34 bp):
GTTTATTGCTACCATAATGATCTATTATAAGCAT
Found at i:14961835 original size:94 final size:96
Alignment explanation
Indices: 14961623--14961850 Score: 264
Period size: 94 Copynumber: 2.4 Consensus size: 96
14961613 GAAGAGTCAA
* * * * * * **
14961623 CAGTTTATCTGCAATGGCCAGTGGTTCATCCACAACGTATTAAAAGATTTTATCTACATTGATGG
1 CAGTTCATCTGCAATGGTCAGTGGTTCATCCACAACATACTAAAAGACTTAATCTACACCGATGG
*
14961688 ATGGTTCATCCACCGATATTTTTATTACTAT
66 ATGGTTCATCCACCGATATTTTTATTACTAG
* * * *
14961719 CA-ATCATCTGCAATGGTTAGTGGTTCATCCACAACATACTAGAA-ACTTAATCTATACCGATGG
1 CAGTTCATCTGCAATGGTCAGTGGTTCATCCACAACATACTAAAAGACTTAATCTACACCGATGG
* * * *
14961782 GTGG-TCATCCATCTATATTTTTATTACTGG
66 ATGGTTCATCCACCGATATTTTTATTACTAG
* *
14961812 CAGTTCATCTGCAGTGATCAGTGGTTCATCCACAACATA
1 CAGTTCATCTGCAATGGTCAGTGGTTCATCCACAACATA
14961851 GTGTAAAGGT
Statistics
Matches: 110, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
93 24 0.22
94 49 0.45
95 35 0.32
96 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.35
Consensus pattern (96 bp):
CAGTTCATCTGCAATGGTCAGTGGTTCATCCACAACATACTAAAAGACTTAATCTACACCGATGG
ATGGTTCATCCACCGATATTTTTATTACTAG
Found at i:14962365 original size:320 final size:320
Alignment explanation
Indices: 14961711--14962667 Score: 1524
Period size: 320 Copynumber: 3.0 Consensus size: 320
14961701 CGATATTTTT
* * * * **
14961711 ATTACTATCAATCATCTGCAATGGTTAGTGGTTCATCCACAACATACTAGAAAC-TTAATCTATA
1 ATTACTAGCAATCATTTGCAAAGGTTAGTGGTTCATCCACAACATACTAGAAACTTTTATCTGCA
*
14961775 CCGATGGGTGGTCATCCATCTATATTTTTATTACTGGCAGTTCATCTGCAGTGATCAGTGGTTCA
66 CTGATGGGTGGTCATCCATCTATATTTTTATTACTGGCAGTTCATCTGCAGTGATCAGTGGTTCA
*
14961840 TCCACAACATAGTGTAAAGGTAGATGAGTTCTCAAGAACTCTTATTGTAATGTGTAGCGGAGTTG
131 TCCACAACATGGTGTAAAGGTAGATGAGTTCTCAAGAACTCTTATTGTAATGTGTAGCGGAGTTG
14961905 GGTAGGATCTTTGATAAATTGAAATTGCATCACCATTAATGAGCATGTGCATACATAAACTGTGA
196 GGTAGGATCTTTGATAAATTGAAATTGCATCACCATTAATGAGCATGTGCATACATAAACTGTGA
*
14961970 ATTC-GAAAATATTATGATATTGATGTGATCTAAAGAATCAATACTCTAAATCGCTATACG
261 ATTCTG-AAATATTATGATATTGATGTGATCTAAAGAATCAATACTCTGAATCGCTATACG
* * *
14962030 ATTACTAGTAATCATTTGCAAAAGTTATTGGTTCATCCACAACATACTAGAAACTTTTATCTGCA
1 ATTACTAGCAATCATTTGCAAAGGTTAGTGGTTCATCCACAACATACTAGAAACTTTTATCTGCA
* * * * *
14962095 CTGACGGGTGGTCATCCACCTATATTTTTATTACTAGTAATTCATCTGCAGTGATCAGTGGTTCA
66 CTGATGGGTGGTCATCCATCTATATTTTTATTACTGGCAGTTCATCTGCAGTGATCAGTGGTTCA
* * * ** **
14962160 TCCACAACATGGTGTAAAGGTAGAGGAGTTCTCGAGAACTCTTATTTTGGTGTGTAATGGAGTTG
131 TCCACAACATGGTGTAAAGGTAGATGAGTTCTCAAGAACTCTTATTGTAATGTGTAGCGGAGTTG
* * * *
14962225 GGTAGGATCTTTGATAAGTTGAAACTGAATCACCATTAATGAGCATGTGCATACATAAATTGTGA
196 GGTAGGATCTTTGATAAATTGAAATTGCATCACCATTAATGAGCATGTGCATACATAAACTGTGA
* * * * *
14962290 ATTCTGAAATATTATAATATTGATATGTTCTAAAGAGTCGATACTCTGAATCGCTATACG
261 ATTCTGAAATATTATGATATTGATGTGATCTAAAGAATCAATACTCTGAATCGCTATACG
* *
14962350 ATTACTAGCAATCATTTGCAACGGTTAGTGGTTCATCCACAACATACTAAAAACTTTTATCTGCA
1 ATTACTAGCAATCATTTGCAAAGGTTAGTGGTTCATCCACAACATACTAGAAACTTTTATCTGCA
*
14962415 -TCGATGGGTGGTCATCCATCAATATTTTTATTACTGGCAGTTCATCTGCAGTGATCAGTGGTTC
66 CT-GATGGGTGGTCATCCATCTATATTTTTATTACTGGCAGTTCATCTGCAGTGATCAGTGGTTC
*
14962479 ATCCACAACGTGGTGTAAAGGTAGATGAGTTCTCAAGAACTCTTATTGTAATGTGTAGCGGAGTT
130 ATCCACAACATGGTGTAAAGGTAGATGAGTTCTCAAGAACTCTTATTGTAATGTGTAGCGGAGTT
*
14962544 GGGTAGGATTTTTGATAAATTGAAATTGCATCACCATTAATGAGCATGTGCATACATAAACTGTG
195 GGGTAGGATCTTTGATAAATTGAAATTGCATCACCATTAATGAGCATGTGCATACATAAACTGTG
*
14962609 AATTCTGAAAAATTATGATATTGATGTGATCTAAAGAATCAATACTCTGAATCGCTATA
260 AATTCTGAAATATTATGATATTGATGTGATCTAAAGAATCAATACTCTGAATCGCTATA
14962668 GGAGTGTGAT
Statistics
Matches: 572, Mismatches: 63, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
319 49 0.09
320 522 0.91
321 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (320 bp):
ATTACTAGCAATCATTTGCAAAGGTTAGTGGTTCATCCACAACATACTAGAAACTTTTATCTGCA
CTGATGGGTGGTCATCCATCTATATTTTTATTACTGGCAGTTCATCTGCAGTGATCAGTGGTTCA
TCCACAACATGGTGTAAAGGTAGATGAGTTCTCAAGAACTCTTATTGTAATGTGTAGCGGAGTTG
GGTAGGATCTTTGATAAATTGAAATTGCATCACCATTAATGAGCATGTGCATACATAAACTGTGA
ATTCTGAAATATTATGATATTGATGTGATCTAAAGAATCAATACTCTGAATCGCTATACG
Found at i:14963100 original size:2 final size:2
Alignment explanation
Indices: 14963088--14963123 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
14963078 AGAAATACAC
*
14963088 AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14963124 CTAGAACCCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:14977223 original size:34 final size:34
Alignment explanation
Indices: 14977179--14977342 Score: 220
Period size: 34 Copynumber: 4.8 Consensus size: 34
14977169 AAGATTTTAA
* * *
14977179 TATGCAAACCCTCATGTTATATAGTATGACGTAG
1 TATGCGAACCCCCATGTTATATAGTATGACATAG
*
14977213 TATACGAACCCCCATGTTATATAGTATGACATAG
1 TATGCGAACCCCCATGTTATATAGTATGACATAG
* * *
14977247 CATGTGAACCCCCATGTCATATAGTATGACATAG
1 TATGCGAACCCCCATGTTATATAGTATGACATAG
* * *
14977281 TATGCGAACCTCAATGTTATATAGAATGACATAG
1 TATGCGAACCCCCATGTTATATAGTATGACATAG
* *
14977315 TTTGTGAACCCCCATGTTATATAGTATG
1 TATGCGAACCCCCATGTTATATAGTATG
14977343 TGATTTAATA
Statistics
Matches: 111, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 111 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (34 bp):
TATGCGAACCCCCATGTTATATAGTATGACATAG
Found at i:14983583 original size:43 final size:43
Alignment explanation
Indices: 14983522--14983625 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
14983512 AAACTATGCT
* * *
14983522 GCTAAAGATCATGACCTTTAGCGACGCTTGTAC-CACAAACACC
1 GCTAAAAATCATGACCTTTAGCGACGCTTCT-CGCAAAAACACC
* * *
14983565 GCTAAAAATCTTGACCTTTAGCGGCGCTTCTCGCAAAAACGCC
1 GCTAAAAATCATGACCTTTAGCGACGCTTCTCGCAAAAACACC
14983608 GCTAAAAA-CAT-ACCTTTA
1 GCTAAAAATCATGACCTTTA
14983626 AAAAATTTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 7 0.13
42 3 0.06
43 43 0.81
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (43 bp):
GCTAAAAATCATGACCTTTAGCGACGCTTCTCGCAAAAACACC
Found at i:14987642 original size:14 final size:15
Alignment explanation
Indices: 14987623--14987651 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14987613 CTTAAACCAA
14987623 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
14987637 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
14987652 GATCTATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:14987732 original size:21 final size:20
Alignment explanation
Indices: 14987708--14987756 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
14987698 TAAATTAACC
14987708 ATATAATACCCTAAACTATA
1 ATATAATACCCTAAACTATA
14987728 TATATTAA-ACCCTAAACTATA
1 -ATA-TAATACCCTAAACTATA
14987749 ATGATAAT
1 AT-ATAAT
14987757 TAATTAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.20
21 17 0.68
22 3 0.12
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (20 bp):
ATATAATACCCTAAACTATA
Found at i:14992534 original size:43 final size:43
Alignment explanation
Indices: 14992415--14992534 Score: 115
Period size: 43 Copynumber: 2.8 Consensus size: 43
14992405 CAATGCCACT
* * *
14992415 GTCCCAGACAG-GGTCTTACACG--AAT-CAAATACGATGCCGAT
1 GTCCCAGAC-GTGGTCTTACACGAAAATACAAAT-CGATGACAAC
* * *
14992456 GTCCCAGACATAGTCTTACAC-ATAAACACAAATCGATGACAAC
1 GTCCCAGACGTGGTCTTACACGA-AAATACAAATCGATGACAAC
*
14992499 GTCCCAGACGTGGTCTTACACGAAAATACATATCGA
1 GTCCCAGACGTGGTCTTACACGAAAATACAAATCGA
14992535 AAATCCTATG
Statistics
Matches: 63, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
41 18 0.29
43 39 0.62
44 6 0.10
ACGTcount: A:0.36, C:0.27, G:0.17, T:0.20
Consensus pattern (43 bp):
GTCCCAGACGTGGTCTTACACGAAAATACAAATCGATGACAAC
Found at i:14993684 original size:91 final size:90
Alignment explanation
Indices: 14993530--14993697 Score: 237
Period size: 91 Copynumber: 1.9 Consensus size: 90
14993520 AAAGTCATTC
* * * * * *
14993530 AGACCACATTTATTGACATCTAAACAACAATTTACTATTGCTTTAATACACCAAACAATAGTCCT
1 AGACAACATTAATTGACAACTAAACAACAATTTACTACTGCATTAATACACCAAACAACAGTCCT
14993595 TAAAACAACATAAATACAATCACTT
66 TAAAACAACATAAATACAATCACTT
* * *
14993620 AGACAACATTAATTGACAACTAAACAAGAATTTTTCTGCTGCATTAATACACCAAACAACAGTCC
1 AGACAACATTAATTGACAACTAAACAACAA-TTTACTACTGCATTAATACACCAAACAACAGTCC
*
14993685 TTAAAATAACATA
65 TTAAAACAACATA
14993698 TTTTTCTTGT
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
90 26 0.39
91 41 0.61
ACGTcount: A:0.45, C:0.21, G:0.06, T:0.27
Consensus pattern (90 bp):
AGACAACATTAATTGACAACTAAACAACAATTTACTACTGCATTAATACACCAAACAACAGTCCT
TAAAACAACATAAATACAATCACTT
Found at i:14996115 original size:47 final size:47
Alignment explanation
Indices: 14996061--14996248 Score: 155
Period size: 47 Copynumber: 4.0 Consensus size: 47
14996051 ACCGAATAGG
* *
14996061 TGATGCTTGAATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTT
1 TGATGCTTAAATGCTGCCCAATTTGTTGCATATATGCTGCCCAATTT
* ** *
14996108 TGATGCTTAAATGTTGTTCAATTTGTTGTATATATGCTGCCCAA-TT
1 TGATGCTTAAATGCTGCCCAATTTGTTGCATATATGCTGCCCAATTT
* ** * * * * *
14996154 TGTTGCACATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAA-TT
1 TGATGCTTAAATGCTGCCCAA-TTTGTTGCATATATGCTGCCCAATTT
* * * * * * *
14996201 TGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTT
1 TGATGCTTAAATGCTGCCCAA-TTTGTTGCATATATGCTGCCCAATTT
14996249 GTTGTATATA
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
46 17 0.14
47 103 0.84
48 2 0.02
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (47 bp):
TGATGCTTAAATGCTGCCCAATTTGTTGCATATATGCTGCCCAATTT
Found at i:14996184 original size:70 final size:70
Alignment explanation
Indices: 14996071--14996224 Score: 254
Period size: 70 Copynumber: 2.2 Consensus size: 70
14996061 TGATGCTTGA
* * **
14996071 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGTTGTTCAATTTGTTG
1 ATGCTGCCCAATTTGTTGCACATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTG
*
14996136 TATAT
66 CATAT
14996141 ATGCTGCCCAATTTGTTGCACATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTG
1 ATGCTGCCCAATTTGTTGCACATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTG
14996206 CATAT
66 CATAT
*
14996211 ATGCTGTCCAATTT
1 ATGCTGCCCAATTT
14996225 TGATGCTTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 78 1.00
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (70 bp):
ATGCTGCCCAATTTGTTGCACATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTG
CATAT
Found at i:14996204 original size:117 final size:116
Alignment explanation
Indices: 14996061--14996455 Score: 411
Period size: 117 Copynumber: 3.4 Consensus size: 116
14996051 ACCGAATAGG
* * * *
14996061 TGATGCTTGAATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGTTGTT
1 TGATG-TTAAATGCTGCCCAAATTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCT
* *
14996126 CAATTTGTTGTATATATGCTGCCCAATTTGTTGCACATATGCTGTCCAATTT
65 CAATTTGTTGTATATATGCTGCCCAATTTGTTGAAAATATGCTGTCCAATTT
* *
14996178 TGATGCTTAAATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCC
1 TGATG-TTAAATGCTGCCCAAATTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCT
* * * * *
14996243 CAATTTGTTGTATATATTCTGTCCAATTTTGGTGTAAAA-ATGTTGCTCAAATTGT
65 CAATTTGTTGTATATATGCTGCCCAA-TTTGTTG-AAAATATGCTG-TCCAATT-T
* * * * * * *
14996298 TG-T-ATATATGCTACCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTG-TAAAAATGCTGCT
1 TGATGTTAAATGCTGCCCAAATTGTTGCATATATGCTGTCCAATTTTGATGCT-TAAATGCTGCT
* * ** *
14996360 CAAATTGTTGTATATATGCTGCCCAAATTGTTGAATTTATGCTATCCAATTT
65 CAATTTGTTGTATATATGCTGCCCAATTTGTTGAAAATATGCTGTCCAATTT
* * * * * *
14996412 TGGTGTAAAAATGCTGCTCAAATTGTTGTATATGTGCTGCCCAA
1 TGATGT-TAAATGCTGCCCAAATTGTTGCATATATGCTGTCCAA
14996456 ATTGTTGTAT
Statistics
Matches: 230, Mismatches: 39, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
114 3 0.01
115 9 0.04
116 10 0.04
117 185 0.80
118 11 0.05
119 9 0.04
120 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41
Consensus pattern (116 bp):
TGATGTTAAATGCTGCCCAAATTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGCTGCTC
AATTTGTTGTATATATGCTGCCCAATTTGTTGAAAATATGCTGTCCAATTT
Found at i:14996249 original size:47 final size:47
Alignment explanation
Indices: 14996141--14996309 Score: 241
Period size: 47 Copynumber: 3.6 Consensus size: 47
14996131 TGTTGTATAT
*
14996141 ATGCTGCCCAATTTGTTGCACATATGCTGTCCAATTTTGATGCTTAA
1 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAA
14996188 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAA
1 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAA
* * * *
14996235 ATGCTGCCCAATTTGTTGTATATATTCTGTCCAATTTTGGTG-TAAAA
1 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCT-TAA
* * * *
14996282 ATGTTGCTCAAATTGTTGTATATATGCT
1 ATGCTGCCCAATTTGTTGCATATATGCT
14996310 ACCCAAATTG
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
46 1 0.01
47 111 0.99
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.41
Consensus pattern (47 bp):
ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAA
Found at i:14996271 original size:70 final size:70
Alignment explanation
Indices: 14996071--14996248 Score: 221
Period size: 70 Copynumber: 2.5 Consensus size: 70
14996061 TGATGCTTGA
* * * * * **
14996071 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCTTAAATGTTGTTCAATTTGTTG
1 ATGCTGCCCAATTTGATGCACAAATGCTGCCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTG
*
14996136 TATAT
66 CATAT
* * *
14996141 ATGCTGCCCAATTTGTTGCACATATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTG
1 ATGCTGCCCAATTTGATGCACAAATGCTGCCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTG
14996206 CATAT
66 CATAT
* **
14996211 ATGCTGTCCAATTTTGATGCTTAAATGCTGCCCAATTT
1 ATGCTGCCCAA-TTTGATGCACAAATGCTGCCCAATTT
14996249 GTTGTATATA
Statistics
Matches: 96, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
70 75 0.78
71 21 0.22
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.42
Consensus pattern (70 bp):
ATGCTGCCCAATTTGATGCACAAATGCTGCCCAATTTTGATGCTTAAATGCTGCCCAATTTGTTG
CATAT
Found at i:14996315 original size:70 final size:70
Alignment explanation
Indices: 14996235--14996514 Score: 420
Period size: 70 Copynumber: 4.0 Consensus size: 70
14996225 TGATGCTTAA
* * * * *
14996235 ATGCTGCCCAATTTGTTGTATATATTCTGTCCAATTTTGGTGTAAAAATGTTGCTCAAATTGTTG
1 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
14996300 TATAT
66 TATAT
*
14996305 ATGCTACCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
1 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
14996370 TATAT
66 TATAT
*
14996375 ATGCTGCCCAAATTGTTGAATTTATGCTATCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
1 ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
14996440 TATAT
66 TATAT
* * * * * *
14996445 GTGCTGCCCAAATTGTTGTATTTATGCTGTCCAAATTTTAGTGTGAAAATGCT-CTCTAATT-TG
1 ATGCTGCCCAAATTGTTGAATTTATGCTGTCC-AATTTTGGTGTAAAAATGCTGCTCAAATTGTT
14996508 GTATAT
65 GTATAT
14996514 A
1 A
14996515 AATGCTGTCC
Statistics
Matches: 193, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
69 7 0.04
70 168 0.87
71 18 0.09
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.41
Consensus pattern (70 bp):
ATGCTGCCCAAATTGTTGAATTTATGCTGTCCAATTTTGGTGTAAAAATGCTGCTCAAATTGTTG
TATAT
Found at i:14996426 original size:47 final size:47
Alignment explanation
Indices: 14996141--14996455 Score: 221
Period size: 47 Copynumber: 6.7 Consensus size: 47
14996131 TGTTGTATAT
* * *
14996141 ATGCTGCCCAATTTGTTGCACATATGCTGTCCAATTTTGATGCT-TAA
1 ATGCTGCCCAATTTGTTGAATATATGCTGTCCAATTTTGATG-TAAAA
* *
14996188 ATGCTGCCCAATTTGTTGCATATATGCTGTCCAATTTTGATGCT-TAA
1 ATGCTGCCCAATTTGTTGAATATATGCTGTCCAATTTTGATG-TAAAA
* * *
14996235 ATGCTGCCCAATTTGTTGTATATATTCTGTCCAATTTTGGTGTAAAA
1 ATGCTGCCCAATTTGTTGAATATATGCTGTCCAATTTTGATGTAAAA
* * * * ** * * **
14996282 ATGTTGCTCAAATTGTTGTATATATGCTACCCAA-ATTGTTG-AATTT
1 ATGCTGCCCAATTTGTTGAATATATGCTGTCCAATTTTGATGTAA-AA
* * * * * * *
14996328 ATGCTGTCCAATTTTGGTGTAA-AAATGCTG-CTCAA-ATTGTTGTATAT
1 ATGCTGCCCAA-TTTGTTG-AATATATGCTGTC-CAATTTTGATGTAAAA
* * * *
14996375 ATGCTGCCCAAATTGTTGAATTTATGCTATCCAATTTTGGTGTAAAA
1 ATGCTGCCCAATTTGTTGAATATATGCTGTCCAATTTTGATGTAAAA
* * * * *
14996422 ATGCTGCTCAAATTGTTGTATATGTGCTGCCCAA
1 ATGCTGCCCAATTTGTTGAATATATGCTGTCCAA
14996456 ATTGTTGTAT
Statistics
Matches: 218, Mismatches: 41, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
45 4 0.02
46 28 0.13
47 184 0.84
48 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (47 bp):
ATGCTGCCCAATTTGTTGAATATATGCTGTCCAATTTTGATGTAAAA
Found at i:14996479 original size:23 final size:23
Alignment explanation
Indices: 14996071--14996481 Score: 243
Period size: 23 Copynumber: 17.6 Consensus size: 23
14996061 TGATGCTTGA
* *
14996071 ATGCTGCCCAATTTGTTGCATAT
1 ATGCTGCCCAAATTGTTGTATAT
* * * *
14996094 ATGCTGTCCAATTTTGATGCT-TAA
1 ATGCTGCCCAA-ATTGTTG-TATAT
* ** *
14996118 ATGTTGTTCAATTTGTTGTATAT
1 ATGCTGCCCAAATTGTTGTATAT
* * *
14996141 ATGCTGCCCAATTTGTTGCACAT
1 ATGCTGCCCAAATTGTTGTATAT
* * * *
14996164 ATGCTGTCCAATTTTGATGCT-TAA
1 ATGCTGCCCAA-ATTGTTG-TATAT
* *
14996188 ATGCTGCCCAATTTGTTGCATAT
1 ATGCTGCCCAAATTGTTGTATAT
* * * *
14996211 ATGCTGTCCAATTTTGATGCT-TAA
1 ATGCTGCCCAA-ATTGTTG-TATAT
*
14996235 ATGCTGCCCAATTTGTTGTATAT
1 ATGCTGCCCAAATTGTTGTATAT
* * * * * *
14996258 ATTCTGTCCAATTTTGGTGTAAAA
1 ATGCTGCCCAA-ATTGTTGTATAT
* *
14996282 ATGTTGCTCAAATTGTTGTATAT
1 ATGCTGCCCAAATTGTTGTATAT
* * *
14996305 ATGCTACCCAAATTGTTGAATTT
1 ATGCTGCCCAAATTGTTGTATAT
* * * * *
14996328 ATGCTGTCCAATTTTGGTGTAAAA
1 ATGCTGCCCAA-ATTGTTGTATAT
*
14996352 ATGCTGCTCAAATTGTTGTATAT
1 ATGCTGCCCAAATTGTTGTATAT
* *
14996375 ATGCTGCCCAAATTGTTGAATTT
1 ATGCTGCCCAAATTGTTGTATAT
** * * * *
14996398 ATGCTATCCAATTTTGGTGTAAAA
1 ATGCTGCCCAA-ATTGTTGTATAT
*
14996422 ATGCTGCTCAAATTGTTGTATAT
1 ATGCTGCCCAAATTGTTGTATAT
* *
14996445 GTGCTGCCCAAATTGTTGTATTT
1 ATGCTGCCCAAATTGTTGTATAT
*
14996468 ATGCTGTCCAAATT
1 ATGCTGCCCAAATT
14996482 TTAGTGTGAA
Statistics
Matches: 292, Mismatches: 84, Indels: 24
0.73 0.21 0.06
Matches are distributed among these distances:
22 2 0.01
23 193 0.66
24 97 0.33
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (23 bp):
ATGCTGCCCAAATTGTTGTATAT
Found at i:14997683 original size:14 final size:14
Alignment explanation
Indices: 14997666--14997695 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14997656 TCATATTCAA
14997666 ATTATTATAATCAC
1 ATTATTATAATCAC
14997680 ATTATTATAATCAC
1 ATTATTATAATCAC
14997694 AT
1 AT
14997696 AATGTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTATTATAATCAC
Found at i:15001946 original size:50 final size:50
Alignment explanation
Indices: 15001848--15001977 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 50
15001838 GGATGGACAA
* * **
15001848 TTTCAATGCAT-TGAGATA-TTTTATCATTCAAATACATGAGCATGGATGG
1 TTTCAATGCATAT-AAATATTTTTCTCATTCAAATACATGAGCAAAGATGG
*
15001897 TTTCAATGCATATAAATATTTTTCTCATTCAAATACATGTGCAAAGATGG
1 TTTCAATGCATATAAATATTTTTCTCATTCAAATACATGAGCAAAGATGG
*
15001947 TTTCAATGCATGA-ATATATTGTTTCTCATTC
1 TTTCAATGCAT-ATAAATATT-TTTCTCATTC
15001978 CATTATATGA
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
49 15 0.21
50 45 0.63
51 11 0.15
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (50 bp):
TTTCAATGCATATAAATATTTTTCTCATTCAAATACATGAGCAAAGATGG
Found at i:15004149 original size:40 final size:40
Alignment explanation
Indices: 15004085--15004302 Score: 244
Period size: 40 Copynumber: 5.5 Consensus size: 40
15004075 ATCGTCAGAT
* * * *
15004085 CAACCG-AACACACCAGACAAAAGCTCATAAGAGCTGATC
1 CAACCGAAACACGCCAAACAGAAGCTCATAAGAGCTAATC
*
15004124 CAACCGAAACACGCTAAACAGAAGCTCATAAGAGCTAATC
1 CAACCGAAACACGCCAAACAGAAGCTCATAAGAGCTAATC
* *
15004164 CAACTGAAACACGCCAAACAGAAGCTCATAAGAGCTGATC
1 CAACCGAAACACGCCAAACAGAAGCTCATAAGAGCTAATC
* * * * * *
15004204 CGACTGAAATATGCCAAACAGAAGCTTATAAGAGCTAGTC
1 CAACCGAAACACGCCAAACAGAAGCTCATAAGAGCTAATC
* * * *
15004244 CACCCGAAACACG-CTAACAAAAGCTTATAAGAGCTAATC
1 CAACCGAAACACGCCAAACAGAAGCTCATAAGAGCTAATC
*
15004283 C-ACCCAAATCACGCCAAACA
1 CAACCGAAA-CACGCCAAACA
15004303 AAAAGTATCA
Statistics
Matches: 151, Mismatches: 25, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
38 5 0.03
39 34 0.23
40 112 0.74
ACGTcount: A:0.43, C:0.28, G:0.15, T:0.13
Consensus pattern (40 bp):
CAACCGAAACACGCCAAACAGAAGCTCATAAGAGCTAATC
Found at i:15012279 original size:9 final size:10
Alignment explanation
Indices: 15012263--15012302 Score: 62
Period size: 10 Copynumber: 3.9 Consensus size: 10
15012253 AGTTGGGGAT
15012263 GAAAAAAAAA
1 GAAAAAAAAA
15012273 GAAAAAAAAA
1 GAAAAAAAAA
15012283 GAAAAAAAAAA
1 G-AAAAAAAAA
*
15012294 GAGAAAAAA
1 GAAAAAAAA
15012303 TGGGAAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
10 18 0.64
11 10 0.36
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:15012280 original size:11 final size:11
Alignment explanation
Indices: 15012264--15012302 Score: 62
Period size: 11 Copynumber: 3.6 Consensus size: 11
15012254 GTTGGGGATG
15012264 AAAAAAAAAG-
1 AAAAAAAAAGA
15012274 AAAAAAAAAGA
1 AAAAAAAAAGA
15012285 AAAAAAAAAGA
1 AAAAAAAAAGA
*
15012296 GAAAAAA
1 AAAAAAA
15012303 TGGGAAAGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 10 0.37
11 17 0.63
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:15012342 original size:26 final size:26
Alignment explanation
Indices: 15012312--15012364 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15012302 ATGGGAAAGG
*
15012312 TTGGGGTGGAGTTTTATGGGGCTTTT
1 TTGGGGTGGAGTTTTATAGGGCTTTT
15012338 TTGGGGTGGAGTTTTATAGGGCTTTT
1 TTGGGGTGGAGTTTTATAGGGCTTTT
15012364 T
1 T
15012365 CTGTTTGGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.09, C:0.04, G:0.40, T:0.47
Consensus pattern (26 bp):
TTGGGGTGGAGTTTTATAGGGCTTTT
Found at i:15032182 original size:19 final size:18
Alignment explanation
Indices: 15032158--15032210 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
15032148 TCTTAAAAAT
15032158 ATTTTTTTATAATTTTATA
1 ATTTTTTTATAATTTT-TA
**
15032177 ATTTTTAAATAA-TTTTA
1 ATTTTTTTATAATTTTTA
15032194 ATGTTTTTT-TAATTTTT
1 AT-TTTTTTATAATTTTT
15032211 TAATAGTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 7 0.25
18 11 0.39
19 10 0.36
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
ATTTTTTTATAATTTTTA
Found at i:15033932 original size:18 final size:18
Alignment explanation
Indices: 15033909--15033945 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
15033899 GTTCGAGTTG
*
15033909 ACTCGAATAACTTGATTA
1 ACTCGAATAACTCGATTA
15033927 ACTCGAATAACTCGATTA
1 ACTCGAATAACTCGATTA
15033945 A
1 A
15033946 TTTAACTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.30
Consensus pattern (18 bp):
ACTCGAATAACTCGATTA
Found at i:15045187 original size:19 final size:19
Alignment explanation
Indices: 15045147--15045187 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15045137 TTGTTCTCAA
* * *
15045147 TTAGTTCTTAAAATCATGT
1 TTAGTTATTAAAAGCATAT
15045166 TTAGTTATTAAAAGCATAT
1 TTAGTTATTAAAAGCATAT
15045185 TTA
1 TTA
15045188 TGCCCTTTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (19 bp):
TTAGTTATTAAAAGCATAT
Found at i:15048205 original size:85 final size:85
Alignment explanation
Indices: 15048063--15048301 Score: 311
Period size: 85 Copynumber: 2.8 Consensus size: 85
15048053 ATCTGTTACT
* * *
15048063 CGGTGGATTCAGCACTTAGCAACCA-CTTTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
* *
15048127 CCCTTTCACAGTCAAGGATA
66 CCCTTTCACAATCAAAGATA
* * *
15048147 CGGTGGAATCAGCACTTAGTAACCACCTTTATATTCAGTAATACGGGGAATCAGCACATAGCGAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
* *
15048212 ACCTTTCACAATTAAAGATA
66 CCCTTTCACAATCAAAGATA
* * * * * * *
15048232 CGGTGGAATCAGTACTTAGCAATCACCTTTAAAGTCAATAATTC-GGGAATTAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
15048296 CCCTTT
66 CCCTTT
15048302 TTATTCAATG
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
84 45 0.34
85 88 0.66
ACGTcount: A:0.33, C:0.23, G:0.18, T:0.25
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
CCCTTTCACAATCAAAGATA
Found at i:15050493 original size:26 final size:26
Alignment explanation
Indices: 15050463--15050514 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15050453 TTCTCTCTTC
15050463 AATCAATATAAGATATTAATAAAGAG
1 AATCAATATAAGATATTAATAAAGAG
*
15050489 AATCAATATAATATATTAATAAAGAG
1 AATCAATATAAGATATTAATAAAGAG
15050515 CTTATTAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AATCAATATAAGATATTAATAAAGAG
Found at i:15053363 original size:251 final size:251
Alignment explanation
Indices: 15052920--15053676 Score: 1460
Period size: 251 Copynumber: 3.0 Consensus size: 251
15052910 TGGCATGTAC
* *
15052920 TTAGGAGTGTCAAGTTGTTTGTAATGTTAATTATATTTTGTGATCTAGTTGATTTTGACCATATA
1 TTAGGAGTGTCAAGTTGTTTGTAATGTTAATTATATTTTGTGATCTATTTGATTTTGACCACATA
15052985 TGGTAACTTATGGAAATGTTGATTTGCTCATGTTCATAGTTTTGGTATATTGCTATTCATAAATA
66 TGGTAACTTATGGAAATGTTGATTTGCTCATGTTCATAGTTTTGGTATATTGCTATTCATAAATA
*
15053050 GATGGCAATTATAATGAGTCAGGAATGCTTTAATCAACTTGTTGTATGGAATGAATAAGTAATAA
131 GATGGCAATTATAATGAGTCAGGAATGCTTTAATCAACTTGTTGTATGGAATGGATAAGTAATAA
*
15053115 CAAATGGTATAAATAGGTGGAGTGGCTTGTATTGGTTCAAGTATCCTTGTTGTGAA
196 CAAATGGTATAAATAGGTGGAATGGCTTGTATTGGTTCAAGTATCCTTGTTGTGAA
15053171 TTAGGAGTGTCAAGTTGTTTGTAATGTTAATTATATTTTGTGATCTATTTGATTTTGACCACATA
1 TTAGGAGTGTCAAGTTGTTTGTAATGTTAATTATATTTTGTGATCTATTTGATTTTGACCACATA
15053236 TGGTAACTTATGGAAATGTTGATTTGCTCATGTTCATAGTTTTGGTATATTGCTATTCATAAATA
66 TGGTAACTTATGGAAATGTTGATTTGCTCATGTTCATAGTTTTGGTATATTGCTATTCATAAATA
15053301 GATGGCAATTATAATGAGTCAGGAATGCTTTAATCAACTTGTTGTATGGAATGGATAAGTAATAA
131 GATGGCAATTATAATGAGTCAGGAATGCTTTAATCAACTTGTTGTATGGAATGGATAAGTAATAA
15053366 CAAATGGTATAAATAGGTGGAATGGCTTGTATTGGTTCAAGTATCCTTGTTGTGAA
196 CAAATGGTATAAATAGGTGGAATGGCTTGTATTGGTTCAAGTATCCTTGTTGTGAA
*
15053422 TTAGGAGTGTCAAGTTGTTTGTAATGTTAATTATATTTTGTGATCTATTTGATTTTGACTACATA
1 TTAGGAGTGTCAAGTTGTTTGTAATGTTAATTATATTTTGTGATCTATTTGATTTTGACCACATA
15053487 TGGTAACTTATGGAAATGTTGATTTGCTCATGTTCATAGTTTTGGTATATTGCTATTCATAAATA
66 TGGTAACTTATGGAAATGTTGATTTGCTCATGTTCATAGTTTTGGTATATTGCTATTCATAAATA
15053552 GATGGCAATTATAATGAGTCAGGAATGCTTTAATCAACTTGTTGTATGGAATGGATAAGTAATAA
131 GATGGCAATTATAATGAGTCAGGAATGCTTTAATCAACTTGTTGTATGGAATGGATAAGTAATAA
*
15053617 CAAATGGTCTAAATAGGTGGAATGGCTTGTATTGGTTCAAGTATCCTTGTTGTGAA
196 CAAATGGTATAAATAGGTGGAATGGCTTGTATTGGTTCAAGTATCCTTGTTGTGAA
15053673 TTAG
1 TTAG
15053677 TGCCAAATGT
Statistics
Matches: 500, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
251 500 1.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (251 bp):
TTAGGAGTGTCAAGTTGTTTGTAATGTTAATTATATTTTGTGATCTATTTGATTTTGACCACATA
TGGTAACTTATGGAAATGTTGATTTGCTCATGTTCATAGTTTTGGTATATTGCTATTCATAAATA
GATGGCAATTATAATGAGTCAGGAATGCTTTAATCAACTTGTTGTATGGAATGGATAAGTAATAA
CAAATGGTATAAATAGGTGGAATGGCTTGTATTGGTTCAAGTATCCTTGTTGTGAA
Found at i:15056731 original size:20 final size:20
Alignment explanation
Indices: 15056703--15056759 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
15056693 AATACTATGA
* *
15056703 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
15056723 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
15056743 TCCATTTCATTTACTTA
1 ACCATTCCATTTACTTA
15056760 GCATAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:15061898 original size:20 final size:20
Alignment explanation
Indices: 15061853--15061898 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
15061843 TTTAAAATAT
* *
15061853 AAAAATTTATTAATATGTCT
1 AAAAATTTATTAATATATCG
* *
15061873 ATAAATTTATTAATATATGG
1 AAAAATTTATTAATATATCG
15061893 AAAAAT
1 AAAAAT
15061899 AACTTTTCCG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (20 bp):
AAAAATTTATTAATATATCG
Found at i:15062011 original size:20 final size:20
Alignment explanation
Indices: 15061986--15062025 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15061976 AAATATTTTC
15061986 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
15062006 AGTAAATCATTTTCCAGAAA
1 AGTAAATCATTTTCCAGAAA
15062026 TCATTTTCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:15062027 original size:34 final size:32
Alignment explanation
Indices: 15061976--15062039 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 32
15061966 AAACACTAGA
15061976 AAATATTTTCAGTAAATCATTTTCCAGAAAAGT
1 AAATATTTTCAGTAAATCATTTTCC-GAAAAGT
15062009 AAATCATTTTCCAG-AAATCATTTTCCGAAAA
1 AAAT-ATTTT-CAGTAAATCATTTTCCGAAAA
15062040 ATATTTTACT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 9 0.31
34 17 0.59
35 3 0.10
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (32 bp):
AAATATTTTCAGTAAATCATTTTCCGAAAAGT
Found at i:15062045 original size:14 final size:14
Alignment explanation
Indices: 15062009--15062046 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
15061999 CCAGAAAAGT
*
15062009 AAATCATTTTCCAG
1 AAATCATTTTCCAA
15062023 AAATCATTTTCCGAA
1 AAATCATTTTCC-AA
15062038 AAAT-ATTTT
1 AAATCATTTT
15062047 ACTGCCAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.39
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:15063200 original size:27 final size:27
Alignment explanation
Indices: 15063134--15063210 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 27
15063124 AAACATGAGA
* * * *
15063134 TAGTCTGCTGGGACAGTAAATACGGGG
1 TAGTCCGCTGAGACAATAAACACGGGG
* * *
15063161 TAGTCCACCGAGACATTAAACACGGGG
1 TAGTCCGCTGAGACAATAAACACGGGG
* *
15063188 TAGTTCGCTGAGAAAATAAACAC
1 TAGTCCGCTGAGACAATAAACAC
15063211 AAAGAAGTCC
Statistics
Matches: 39, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.19
Consensus pattern (27 bp):
TAGTCCGCTGAGACAATAAACACGGGG
Found at i:15063793 original size:22 final size:22
Alignment explanation
Indices: 15063759--15063816 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
15063749 TTCAAAGTTC
15063759 TATTTT-TAGGGATTGAT-TAGAA
1 TATTTTATA-GGATT-ATATAGAA
* *
15063781 TATTTTATAGGATTTTATAGGA
1 TATTTTATAGGATTATATAGAA
*
15063803 TATTTTATGGGATT
1 TATTTTATAGGATT
15063817 TTATTGGATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 1 0.03
22 28 0.90
23 2 0.06
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (22 bp):
TATTTTATAGGATTATATAGAA
Found at i:15063797 original size:10 final size:10
Alignment explanation
Indices: 15063782--15063840 Score: 66
Period size: 10 Copynumber: 5.7 Consensus size: 10
15063772 TGATTAGAAT
15063782 ATTTTATAGG
1 ATTTTATAGG
15063792 ATTTTATAGG
1 ATTTTATAGG
*
15063802 ATATTTTATGGG
1 --ATTTTATAGG
*
15063814 ATTTTATTGG
1 ATTTTATAGG
15063824 A-TTTATTAGG
1 ATTTTA-TAGG
15063834 ATTTTAT
1 ATTTTAT
15063841 GAGATATTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
9 4 0.10
10 25 0.60
11 4 0.10
12 9 0.21
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (10 bp):
ATTTTATAGG
Found at i:15063817 original size:22 final size:20
Alignment explanation
Indices: 15063780--15063851 Score: 76
Period size: 22 Copynumber: 3.4 Consensus size: 20
15063770 ATTGATTAGA
15063780 ATATTTTATAGGATTTTATAGG
1 ATATTTTAT-GGATTTTAT-GG
15063802 ATATTTTATGGGATTTTATTGG
1 ATATTTTAT-GGATTTTA-TGG
15063824 AT-TTATTA-GGATTTTATGAG
1 ATATT-TTATGGATTTTATG-G
15063844 ATATTTTA
1 ATATTTTA
15063852 AATTAAGTCT
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
19 2 0.04
20 14 0.31
21 4 0.09
22 24 0.53
23 1 0.02
ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53
Consensus pattern (20 bp):
ATATTTTATGGATTTTATGG
Found at i:15066950 original size:20 final size:20
Alignment explanation
Indices: 15066925--15066979 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
15066915 AGATGAATAC
*
15066925 CAGAGGCGCAAAAGTGCAAA
1 CAGAGGCACAAAAGTGCAAA
* *
15066945 CAGAGGCACAAATGTGCAAT
1 CAGAGGCACAAAAGTGCAAA
*
15066965 CAGAGGCACCAAAGT
1 CAGAGGCACAAAAGT
15066980 ACAATCCTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.42, C:0.22, G:0.27, T:0.09
Consensus pattern (20 bp):
CAGAGGCACAAAAGTGCAAA
Found at i:15075153 original size:39 final size:40
Alignment explanation
Indices: 15075053--15075231 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
15075043 TTGAATGATG
* * * *
15075053 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
15075093 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15075133 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
15075172 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15075213 -CCGGGCTATGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
15075232 TGTTTGAACG
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 34 0.29
40 74 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15075189 original size:79 final size:80
Alignment explanation
Indices: 15075055--15075231 Score: 200
Period size: 79 Copynumber: 2.2 Consensus size: 80
15075045 GAATGATGTC
* *
15075055 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
15075120 GCGAGATACTAATTT
66 GCGAGATACTAATTT
* * * **
15075135 CGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATT
1 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATT
* **
15075197 GTGCGAGTTACT-ATAAC
64 GTGCGAGATACTAAT-TT
*
15075214 CGGGCTATGTCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
15075232 TGTTTGAACG
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 55 0.67
80 24 0.29
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (80 bp):
CGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGT
GCGAGATACTAATTT
Found at i:15075259 original size:79 final size:79
Alignment explanation
Indices: 15075106--15075270 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
15075096 GGACTAAGAT
* ** **
15075106 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
15075171 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * **
15075185 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGTGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
15075248 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
15075264 CCGAAGG
1 CCGAAGG
15075271 TACGTGATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:15084881 original size:43 final size:44
Alignment explanation
Indices: 15084820--15084940 Score: 142
Period size: 43 Copynumber: 2.8 Consensus size: 44
15084810 ATTTTTTATG
* *
15084820 TGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGA-ATCGATT
1 TGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGACATCGATC
*
15084863 TGTGTTTACGTGTAAGACC-CTGTCTGGGACAG--CGACATCGATC
1 TGTGTTTACGTGTAAGACCAC-GTCTGGGAC-GTTGGACATCGATC
* * *
15084906 TGTGATTACATGTAAGACCACGTTTGGGACGTTGG
1 TGTGTTTACGTGTAAGACCACGTCTGGGACGTTGG
15084941 CATTGTATAA
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
42 4 0.06
43 58 0.89
44 3 0.05
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (44 bp):
TGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGACATCGATC
Found at i:15086897 original size:20 final size:20
Alignment explanation
Indices: 15086872--15086909 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15086862 TACGGGATTA
15086872 CACTTCAGTGCCTCTATTTG
1 CACTTCAGTGCCTCTATTTG
*
15086892 CACTTCGGTGCCTCTATT
1 CACTTCAGTGCCTCTATT
15086910 ACGCATCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.32, G:0.16, T:0.39
Consensus pattern (20 bp):
CACTTCAGTGCCTCTATTTG
Found at i:15089769 original size:22 final size:22
Alignment explanation
Indices: 15089737--15089801 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
15089727 TGCCAGTAGT
*
15089737 CAGAATGGCTAAAAGCCATAAA
1 CAGAATAGCTAAAAGCCATAAA
* * *
15089759 CAGGATAGCTATAAGCTATAAA
1 CAGAATAGCTAAAAGCCATAAA
* *
15089781 CAGAATGGCTACAAGCCATAA
1 CAGAATAGCTAAAAGCCATAA
15089802 GTACAGTAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.17
Consensus pattern (22 bp):
CAGAATAGCTAAAAGCCATAAA
Found at i:15089864 original size:32 final size:32
Alignment explanation
Indices: 15089793--15089963 Score: 209
Period size: 32 Copynumber: 5.4 Consensus size: 32
15089783 GAATGGCTAC
* *
15089793 AAGCCATAAGT-ACAGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * * * *
15089824 AAGGCATCATTAGCAGTGATATGATCGGTACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
15089856 TAGCCATCAGTAACGGTAATATGATCGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* * *
15089888 AAGCCATCAGTAACGGTAATATGATCAGTACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
* *
15089920 AAGCCATCAGTAACTGTAATATGATTGGCACA
1 AAGCCATCAGTAACAGTAATATGATCGGCACA
15089952 AAGCCATCAGTA
1 AAGCCATCAGTA
15089964 GCATCGCAGA
Statistics
Matches: 118, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
31 8 0.07
32 110 0.93
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (32 bp):
AAGCCATCAGTAACAGTAATATGATCGGCACA
Found at i:15089910 original size:64 final size:63
Alignment explanation
Indices: 15089790--15089963 Score: 233
Period size: 64 Copynumber: 2.7 Consensus size: 63
15089780 ACAGAATGGC
* * * * * *
15089790 TACAAGCCATAAGT-ACAGTAATATGATTGGCACAAAGGCATCATTAGCAGTGATATGATCGG
1 TACAAGCCATCAGTAACAGTAATATGATTGGCACAAAGCCATCAGTAACAGTAATATGATCAG
* * *
15089852 TACATAGCCATCAGTAACGGTAATATGATCGGCACAAAGCCATCAGTAACGGTAATATGATCAG
1 TACA-AGCCATCAGTAACAGTAATATGATTGGCACAAAGCCATCAGTAACAGTAATATGATCAG
*
15089916 TACAAAGCCATCAGTAACTGTAATATGATTGGCACAAAGCCATCAGTA
1 TAC-AAGCCATCAGTAACAGTAATATGATTGGCACAAAGCCATCAGTA
15089964 GCATCGCAGA
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
62 4 0.04
63 9 0.09
64 84 0.86
65 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (63 bp):
TACAAGCCATCAGTAACAGTAATATGATTGGCACAAAGCCATCAGTAACAGTAATATGATCAG
Found at i:15090037 original size:27 final size:27
Alignment explanation
Indices: 15090007--15090066 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
15089997 AACAAAGCTG
*
15090007 CCAGTAATAGT-ATATGTGGCCA-AGCCA
1 CCAGTAACAGTGAT-TGTGG-CAGAGCCA
15090034 CCAGTAACAGTGATTGTGGCAGAGCCA
1 CCAGTAACAGTGATTGTGGCAGAGCCA
*
15090061 CAAGTA
1 CCAGTA
15090067 CAATACTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 2 0.07
27 25 0.86
28 2 0.07
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAGAGCCA
Found at i:15090206 original size:24 final size:23
Alignment explanation
Indices: 15090154--15090217 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
15090144 TACCAAACAC
* *
15090154 AGACAAAGCAGTCATTTACATCA
1 AGACAAATCAATCATTTACATCA
*
15090177 AGGACAAATCAATCATTTATATCA
1 A-GACAAATCAATCATTTACATCA
* *
15090201 TAGACAATTCAAACATT
1 -AGACAAATCAATCATT
15090218 AACCTAGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
23 1 0.03
24 32 0.94
25 1 0.03
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.27
Consensus pattern (23 bp):
AGACAAATCAATCATTTACATCA
Found at i:15090304 original size:28 final size:27
Alignment explanation
Indices: 15090273--15090326 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
15090263 GGTCAATTCA
*
15090273 CCTAGCAGAGGCATTACGGTCATTTTAC
1 CCTA-CAGAGGCATTACGATCATTTTAC
* * *
15090301 CCTACAGGGGTATTACGATTATTTTA
1 CCTACAGAGGCATTACGATCATTTTA
15090327 TAAAAAATAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (27 bp):
CCTACAGAGGCATTACGATCATTTTAC
Found at i:15100794 original size:14 final size:14
Alignment explanation
Indices: 15100775--15100801 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15100765 GTGGTCCAGT
15100775 TGAACTGAACCGAG
1 TGAACTGAACCGAG
15100789 TGAACTGAACCGA
1 TGAACTGAACCGA
15100802 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:15102672 original size:24 final size:24
Alignment explanation
Indices: 15102617--15102673 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 24
15102607 GGAGGATTAG
*
15102617 CAAGTTTATGTTCATTCTTGAATT
1 CAAGTTTATGTTCATTCTTCAATT
**** *
15102641 GTTCTTTATGTTCATTCTTCCATT
1 CAAGTTTATGTTCATTCTTCAATT
15102665 CAAGTTTAT
1 CAAGTTTAT
15102674 ATTTTTTATT
Statistics
Matches: 23, Mismatches: 10, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.16, G:0.11, T:0.53
Consensus pattern (24 bp):
CAAGTTTATGTTCATTCTTCAATT
Found at i:15103394 original size:13 final size:13
Alignment explanation
Indices: 15103362--15103388 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
15103352 TGTTGGTATG
15103362 TCAGGATTTCTAC
1 TCAGGATTTCTAC
15103375 TCAGGATTTCTAC
1 TCAGGATTTCTAC
15103388 T
1 T
15103389 TTGGATGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (13 bp):
TCAGGATTTCTAC
Found at i:15109247 original size:15 final size:17
Alignment explanation
Indices: 15109217--15109249 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
15109207 TTTAACTACT
15109217 ATCACATTACACATATA
1 ATCACATTACACATATA
15109234 ATCACA-TA-ACATATA
1 ATCACATTACACATATA
15109249 A
1 A
15109250 GCATATATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.27
Consensus pattern (17 bp):
ATCACATTACACATATA
Found at i:15109305 original size:39 final size:39
Alignment explanation
Indices: 15109216--15109307 Score: 132
Period size: 39 Copynumber: 2.4 Consensus size: 39
15109206 TTTTAACTAC
* *
15109216 TATCACATTACACATATAATCACATAACATATAAGCATA
1 TATCACAATACTCATATAATCACATAACATATAAGCATA
15109255 TATCACAATACTCATATAATCACATAACAT-TCAAGCATA
1 TATCACAATACTCATATAATCACATAACATAT-AAGCATA
* *
15109294 TGTCGCAATACTCA
1 TATCACAATACTCA
15109308 AAAACATGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
38 1 0.02
39 47 0.98
ACGTcount: A:0.45, C:0.23, G:0.04, T:0.28
Consensus pattern (39 bp):
TATCACAATACTCATATAATCACATAACATATAAGCATA
Found at i:15120463 original size:50 final size:50
Alignment explanation
Indices: 15120299--15120740 Score: 606
Period size: 50 Copynumber: 8.9 Consensus size: 50
15120289 AATAATAACA
* * ** * * *
15120299 TGCCAAAGCCATGTCCCA-AAATGGTCTTACATGGGATGTTTCCTGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * ** *
15120347 TGCCAATGCCATATCCCAGATATGGTCTTACATGGG-GTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ** *
15120396 TGCCCATC-TCATGTCCCAGACATGGTCTTACGGGGGACCTCTAATCTCGG
1 TG-CCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
15120446 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
15120496 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
15120546 TGCCAATGTCAGGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
15120596 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
15120646 TGCCAATGCCATGTCCCATACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
15120696 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
15120741 AATTTCAATA
Statistics
Matches: 353, Mismatches: 35, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
47 1 0.00
48 21 0.06
49 45 0.13
50 286 0.81
ACGTcount: A:0.21, C:0.31, G:0.22, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:15120586 original size:150 final size:150
Alignment explanation
Indices: 15120299--15120829 Score: 644
Period size: 150 Copynumber: 3.5 Consensus size: 150
15120289 AATAATAACA
* * ** * * * *
15120299 TGCCAAAGCCATGTCCCA-AAATGGTCTTACATGGGATGTTTCCTGTAC--TGCCAATGCCATAT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGGTGCCAATGCCATGT
* ** * * *
15120361 CCCAGATATGGTCTTACATGGG-GTTCTCATATCGGTGCCCATCTCATGTCCCAGACATGGTCTT
65 CCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGTCATGTCCCAGACATGGTCTT
**
15120425 ACGGGGGACCTCTAATCTCGG
130 ACATGGGACCTCTAATCTCGG
*
15120446 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
* *
15120511 CCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAATGTCAGGTCCCAGACATGGTCTTA
66 CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGTCATGTCCCAGACATGGTCTTA
*
15120576 CATGGGACCTCTCATCTCGG
131 CATGGGACCTCTAATCTCGG
15120596 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
* *
15120661 CCATACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGACATGGTCTTA
66 CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGTCATGTCCCAGACATGGTCTTA
* **
15120726 CATGGGACCTCTCATAATTTCAATAA
131 CATGGGA-C-CTC-TAATCTC---GG
* * * * * * * *
15120752 TGTCAATGCCATGTCCTAGACATGGTCTTACACT-GG--CTCACATATCGATGTCGATGCCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACA-TGGGACCTCTCATCTCGGTGCCAATGCCATGT
15120814 CCCAGACATGGTCTTA
65 CCCAGACATGGTCTTA
15120830 TATGAGATCG
Statistics
Matches: 335, Mismatches: 38, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
147 18 0.05
148 22 0.07
149 33 0.10
150 185 0.55
151 1 0.00
152 3 0.01
153 5 0.01
154 36 0.11
156 31 0.09
157 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (150 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTC
CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGTCATGTCCCAGACATGGTCTTA
CATGGGACCTCTAATCTCGG
Found at i:15120849 original size:48 final size:47
Alignment explanation
Indices: 15120751--15120891 Score: 141
Period size: 42 Copynumber: 3.1 Consensus size: 47
15120741 AATTTCAATA
* * * * * *
15120751 ATGTCAATGCCATGTCCTAGACATGGTCTTACACTG-GCTCACATATCG
1 ATGTCGATGCCATGTCCCAGACATGGTCTTATA-TGAGATCGCAT-GCG
15120799 ATGTCGATGCCATGTCCCAGACATGGTCTTATATGAGATCGCATGC-
1 ATGTCGATGCCATGTCCCAGACATGGTCTTATATGAGATCGCATGCG
* *
15120845 ----CGATGCCATATCCCAGATATGGTCTTATATGAGATCGCATGCCG
1 ATGTCGATGCCATGTCCCAGACATGGTCTTATATGAGATCGCATG-CG
15120889 ATG
1 ATG
15120892 CCATATCCCA
Statistics
Matches: 79, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
42 39 0.49
43 1 0.01
47 3 0.04
48 36 0.46
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (47 bp):
ATGTCGATGCCATGTCCCAGACATGGTCTTATATGAGATCGCATGCG
Found at i:15120867 original size:42 final size:42
Alignment explanation
Indices: 15120795--15120915 Score: 199
Period size: 42 Copynumber: 2.9 Consensus size: 42
15120785 TGGCTCACAT
* * *
15120795 ATCG-ATGTCGATGCCATGTCCCAGACATGGTCTTATATGAG
1 ATCGCATGCCGATGCCATATCCCAGATATGGTCTTATATGAG
15120836 ATCGCATGCCGATGCCATATCCCAGATATGGTCTTATATGAG
1 ATCGCATGCCGATGCCATATCCCAGATATGGTCTTATATGAG
*
15120878 ATCGCATGCCGATGCCATATCCCAGATATGGTATTATA
1 ATCGCATGCCGATGCCATATCCCAGATATGGTCTTATA
15120916 CGGATATCAC
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 4 0.05
42 71 0.95
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.29
Consensus pattern (42 bp):
ATCGCATGCCGATGCCATATCCCAGATATGGTCTTATATGAG
Found at i:15133349 original size:36 final size:36
Alignment explanation
Indices: 15133254--15133350 Score: 140
Period size: 37 Copynumber: 2.6 Consensus size: 36
15133244 AGTACATAAG
*
15133254 TAATCCACCTGATAACACGCTAAATGCTCATAAGAGC
1 TAATCCACC-GATAACACGCCAAATGCTCATAAGAGC
* *
15133291 TAATCTACCCAATAACACGCCAAATGCTCATAAGAGC
1 TAATCCA-CCGATAACACGCCAAATGCTCATAAGAGC
*
15133328 TAATCCACCGATAACAAGCCAAA
1 TAATCCACCGATAACACGCCAAA
15133351 ACAGGGAGTA
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
36 14 0.26
37 37 0.70
38 2 0.04
ACGTcount: A:0.41, C:0.29, G:0.11, T:0.19
Consensus pattern (36 bp):
TAATCCACCGATAACACGCCAAATGCTCATAAGAGC
Found at i:15137419 original size:14 final size:14
Alignment explanation
Indices: 15137400--15137426 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15137390 TTAAAGATGA
15137400 TTAAAAACTAAGTG
1 TTAAAAACTAAGTG
15137414 TTAAAAACTAAGT
1 TTAAAAACTAAGT
15137427 AAAAAAAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.11, T:0.30
Consensus pattern (14 bp):
TTAAAAACTAAGTG
Found at i:15140447 original size:39 final size:39
Alignment explanation
Indices: 15140351--15140447 Score: 113
Period size: 39 Copynumber: 2.5 Consensus size: 39
15140341 ATTCACTTTT
* * * * * *
15140351 AAGCATATATCACATTACACATATGATTACATAATGTTC
1 AAGCATATATCGCAATACTCATATAATCACATAACGTTC
* * *
15140390 AAGCACATATTGCAATACTCATATAATCGCATAACGTTC
1 AAGCATATATCGCAATACTCATATAATCACATAACGTTC
15140429 AAGCATATATCGCAATACT
1 AAGCATATATCGCAATACT
15140448 TTTATAGATA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (39 bp):
AAGCATATATCGCAATACTCATATAATCACATAACGTTC
Found at i:15143843 original size:18 final size:18
Alignment explanation
Indices: 15143808--15143843 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15143798 TTGGCTTCGG
*
15143808 AAATTTTTTTATTTTTTT
1 AAATTTTTTTATTATTTT
*
15143826 AAATTTTTTTGTTATTTT
1 AAATTTTTTTATTATTTT
15143844 TTTTGTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (18 bp):
AAATTTTTTTATTATTTT
Found at i:15157261 original size:15 final size:16
Alignment explanation
Indices: 15157241--15157274 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
15157231 CTAGTACAAT
15157241 CAACATTTC-CTATAA
1 CAACATTTCACTATAA
*
15157256 CAACATTTCATTATAA
1 CAACATTTCACTATAA
15157272 CAA
1 CAA
15157275 AATATGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (16 bp):
CAACATTTCACTATAA
Found at i:15168076 original size:18 final size:18
Alignment explanation
Indices: 15168036--15168069 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
15168026 CCATGTGGTC
15168036 TGCCCGTGTGGTCCCACA
1 TGCCCGTGTGGTCCCACA
15168054 TGCCCGTGT-GTCCCAC
1 TGCCCGTGTGGTCCCAC
15168070 TCGGCCCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.09, C:0.41, G:0.26, T:0.24
Consensus pattern (18 bp):
TGCCCGTGTGGTCCCACA
Found at i:15193003 original size:14 final size:14
Alignment explanation
Indices: 15192971--15192997 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15192961 TAGATTTAAG
15192971 TATACTAAAATGAC
1 TATACTAAAATGAC
15192985 TATACTAAAATGA
1 TATACTAAAATGA
15192998 TCATACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (14 bp):
TATACTAAAATGAC
Found at i:15197600 original size:23 final size:23
Alignment explanation
Indices: 15197573--15197625 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
15197563 ATACCTACTT
* *
15197573 TATTACTGTAGTAATTTTCAGGG
1 TATTACAGTAGTAATTTTCAGGA
15197596 TATTACAGTAGTAATTTTCAGGA
1 TATTACAGTAGTAATTTTCAGGA
15197619 TATTACA
1 TATTACA
15197626 TTCCCAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.42
Consensus pattern (23 bp):
TATTACAGTAGTAATTTTCAGGA
Found at i:15197634 original size:23 final size:23
Alignment explanation
Indices: 15197585--15197638 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
15197575 TTACTGTAGT
* **
15197585 AATTTTCAGGGTATTACAGTAGT
1 AATTTTCAGGATATTACAGTACC
* *
15197608 AATTTTCAGGATATTACATTCCC
1 AATTTTCAGGATATTACAGTACC
15197631 AATTTTCA
1 AATTTTCA
15197639 AGTCATTGAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (23 bp):
AATTTTCAGGATATTACAGTACC
Found at i:15201725 original size:3 final size:3
Alignment explanation
Indices: 15201717--15201742 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
15201707 GGCTTTAATA
15201717 GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GA
15201743 AGCTGATGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:15207091 original size:17 final size:15
Alignment explanation
Indices: 15207052--15207091 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
15207042 AAAAGTGATC
15207052 AAAAAAATAAAGAAA
1 AAAAAAATAAAGAAA
15207067 AAAGAAAATACAAGAAA
1 AAA-AAAATA-AAGAAA
15207084 AATAAAAA
1 AA-AAAAA
15207092 AATGAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 3 0.14
16 6 0.27
17 12 0.55
18 1 0.05
ACGTcount: A:0.82, C:0.03, G:0.07, T:0.07
Consensus pattern (15 bp):
AAAAAAATAAAGAAA
Found at i:15210395 original size:39 final size:40
Alignment explanation
Indices: 15210318--15210464 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
15210308 TAGCTCCTCG
* * *
15210318 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
15210358 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
15210397 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
15210437 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
15210465 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:15210475 original size:80 final size:80
Alignment explanation
Indices: 15210364--15210544 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
15210354 CTCATTCAAT
* * *
15210364 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
15210427 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
15210443 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
15210507 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
15210524 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
15210545 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:15210504 original size:40 final size:40
Alignment explanation
Indices: 15210361--15210544 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
15210351 TAACTCATTC
* *
15210361 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
15210401 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
15210441 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
15210481 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
15210522 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
15210545 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:15218290 original size:38 final size:40
Alignment explanation
Indices: 15218132--15218353 Score: 215
Period size: 40 Copynumber: 5.7 Consensus size: 40
15218122 GCTCCTCATT
* * * * *
15218132 CAAATGCCTTC-GGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
15218171 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
15218210 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* * *
15218250 CAAAGGCCTTCGGG-CTTAACCCGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
** * * *
15218288 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
15218329 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
15218354 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 20, Indels: 15
0.82 0.11 0.08
Matches are distributed among these distances:
37 2 0.01
38 29 0.19
39 46 0.30
40 66 0.43
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:15218313 original size:78 final size:78
Alignment explanation
Indices: 15218132--15218351 Score: 228
Period size: 78 Copynumber: 2.8 Consensus size: 78
15218122 GCTCCTCATT
* * * * *
15218132 CAAATGCCTTCGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGAT
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGAAC
15218197 TTAATAACTCGCA
66 TTAATAACTCGCA
* * * *
15218210 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGG-CTTAACCCGA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACTTAACCCGA
* *
15218274 ACTT-GTATCTCGCA
64 ACTTAATAACTCGCA
* * * * * * *
15218288 CAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCA-CACAAGGCCTTCGGGACTTAACCCG
15218352 GACAGCATTC
Statistics
Matches: 115, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
77 3 0.03
78 54 0.47
79 47 0.41
80 11 0.10
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGAAC
TTAATAACTCGCA
Found at i:15218362 original size:41 final size:41
Alignment explanation
Indices: 15218285--15218362 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
15218275 CTTGTATCTC
* * *
15218285 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
15218326 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
15218363 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:15220387 original size:16 final size:15
Alignment explanation
Indices: 15220362--15220405 Score: 65
Period size: 13 Copynumber: 3.0 Consensus size: 15
15220352 AGTATTTAAG
15220362 TATATAATATAATAA
1 TATATAATATAATAA
15220377 TATATTAATATAAT-A
1 TATA-TAATATAATAA
15220392 -ATATAATATAATAA
1 TATATAATATAATAA
15220406 AACATAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 9 0.33
14 4 0.15
15 5 0.19
16 9 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TATATAATATAATAA
Found at i:15220405 original size:8 final size:8
Alignment explanation
Indices: 15220365--15220399 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
15220355 ATTTAAGTAT
15220365 ATAATATA
1 ATAATATA
15220373 ATAATATA
1 ATAATATA
*
15220381 TTAATATA
1 ATAATATA
15220389 ATAATATA
1 ATAATATA
15220397 ATA
1 ATA
15220400 TAATAAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
ATAATATA
Found at i:15221409 original size:44 final size:44
Alignment explanation
Indices: 15221324--15221410 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
15221314 TGTTCAGGAA
* * *
15221324 TACTTCGACCTTGAGTCGATGAGGCACTATAAGTGTTGTACTGT
1 TACTTCGACCTTGAGTCGATAAGGCACCATAAGTGTCGTACTGT
**
15221368 TACTTCGA-CTTCGAGTCGATAAGGCACCATGTGTGTCGTACTG
1 TACTTCGACCTT-GAGTCGATAAGGCACCATAAGTGTCGTACTG
15221411 CTATTGTTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 3 0.08
44 34 0.92
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (44 bp):
TACTTCGACCTTGAGTCGATAAGGCACCATAAGTGTCGTACTGT
Found at i:15230697 original size:24 final size:24
Alignment explanation
Indices: 15230647--15230700 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
15230637 AATCGAATTT
*
15230647 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
15230671 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
15230695 GCACAC
1 GCACAC
15230701 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:15238417 original size:3 final size:3
Alignment explanation
Indices: 15238409--15238442 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
15238399 ACTTCCTTTG
15238409 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
15238443 GTTTGTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15240058 original size:6 final size:5
Alignment explanation
Indices: 15239959--15240054 Score: 52
Period size: 5 Copynumber: 17.8 Consensus size: 5
15239949 TGATTTAGTT
* * *
15239959 TTTTG TTTTA -TTTA TTTTTA TTTTCA GTTGTA CTTTTA TTTTTA TTGTTG
1 TTTTA TTTTA TTTTA -TTTTA TTTT-A -TTTTA -TTTTA -TTTTA TT-TTA
**
15240009 TTTTA TTTTA TTTGTGA GACTT- TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTT-T-A -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
15240055 TATTCTGAAC
Statistics
Matches: 71, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
4 6 0.08
5 39 0.55
6 20 0.28
7 5 0.07
8 1 0.01
ACGTcount: A:0.16, C:0.03, G:0.08, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:15243314 original size:29 final size:32
Alignment explanation
Indices: 15243275--15243338 Score: 89
Period size: 29 Copynumber: 2.1 Consensus size: 32
15243265 CTTAATGTTA
15243275 TAAAAAATTCTTAAA-TTAAA-A-AAAACAAT
1 TAAAAAATTCTTAAATTTAAACACAAAACAAT
* *
15243304 TAAAAATTTCTTAAATTTAAACACAAAACAGT
1 TAAAAAATTCTTAAATTTAAACACAAAACAAT
15243336 TAA
1 TAA
15243339 CTTTTTCCTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 14 0.47
30 5 0.17
31 1 0.03
32 10 0.33
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (32 bp):
TAAAAAATTCTTAAATTTAAACACAAAACAAT
Found at i:15243696 original size:10 final size:10
Alignment explanation
Indices: 15243681--15243808 Score: 65
Period size: 10 Copynumber: 13.5 Consensus size: 10
15243671 TGACATGTGG
15243681 TAAAAAATTA
1 TAAAAAATTA
15243691 TAAAAAA--A
1 TAAAAAATTA
* *
15243699 -ATAAAATCA
1 TAAAAAATTA
*
15243708 -ATAAAATTA
1 TAAAAAATTA
*
15243717 -ATAAAATT-
1 TAAAAAATTA
*
15243725 TAATAAAAATA
1 TAA-AAAATTA
* **
15243736 TTAAATTTTA
1 TAAAAAATTA
*
15243746 TTAAAAATTA
1 TAAAAAATTA
**
15243756 TAAAAAATCG
1 TAAAAAATTA
15243766 TAAAAAATTA
1 TAAAAAATTA
*
15243776 TAAAATATTA
1 TAAAAAATTA
*
15243786 T--AAAATCA
1 TAAAAAATTA
*
15243794 TAAAAAGTTA
1 TAAAAAATTA
15243804 TAAAA
1 TAAAA
15243809 TGCATCAAAA
Statistics
Matches: 91, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
7 5 0.05
8 7 0.08
9 18 0.20
10 59 0.65
11 2 0.02
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:15243724 original size:9 final size:9
Alignment explanation
Indices: 15243684--15243732 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
15243674 CATGTGGTAA
15243684 AAAATT-AT
1 AAAATTAAT
**
15243692 AAAAAAAAT
1 AAAATTAAT
*
15243701 AAAATCAAT
1 AAAATTAAT
15243710 AAAATTAAT
1 AAAATTAAT
15243719 AAAATTTAAT
1 AAAA-TTAAT
15243729 AAAA
1 AAAA
15243733 ATATTAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
8 4 0.12
9 21 0.62
10 9 0.26
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (9 bp):
AAAATTAAT
Found at i:15243731 original size:19 final size:19
Alignment explanation
Indices: 15243698--15243791 Score: 61
Period size: 18 Copynumber: 4.9 Consensus size: 19
15243688 TTATAAAAAA
*
15243698 AATAAAA-TCAATAAAATT
1 AATAAAATTTAATAAAATT
*
15243716 AATAAAATTTAATAAAAAT
1 AATAAAATTTAATAAAATT
* * *
15243735 ATTAAATTTTATTAAAAATT
1 AATAAAATTTAAT-AAAATT
* *
15243755 ATAAAAAATCGTAA-AAAATT
1 A-ATAAAAT-TTAATAAAATT
15243775 -ATAAAATATT-ATAAAAT
1 AATAAAAT-TTAATAAAAT
15243792 CATAAAAAGT
Statistics
Matches: 57, Mismatches: 14, Indels: 10
0.70 0.17 0.12
Matches are distributed among these distances:
17 1 0.02
18 19 0.33
19 19 0.33
20 12 0.21
21 4 0.07
22 2 0.04
ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34
Consensus pattern (19 bp):
AATAAAATTTAATAAAATT
Found at i:15243799 original size:28 final size:29
Alignment explanation
Indices: 15243681--15243809 Score: 101
Period size: 28 Copynumber: 4.6 Consensus size: 29
15243671 TGACATGTGG
**
15243681 TAAAAAATTATAAAA-AAAAT-AAAATCA
1 TAAAAAATTATAAAATATTATAAAAATCA
*
15243708 -ATAAAATTAATAAAAT-TTAATAAAAAT-A
1 TAAAAAATT-ATAAAATATT-ATAAAAATCA
* ** *
15243736 TTAAATTTTATTAAAA-ATTATAAAAAATCG
1 TAAAAAATTA-TAAAATATTAT-AAAAATCA
15243766 TAAAAAATTATAAAATATTAT-AAAATCA
1 TAAAAAATTATAAAATATTATAAAAATCA
*
15243794 TAAAAAGTTATAAAAT
1 TAAAAAATTATAAAAT
15243810 GCATCAAAAA
Statistics
Matches: 79, Mismatches: 13, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
26 7 0.09
27 6 0.08
28 27 0.34
29 27 0.34
30 12 0.15
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (29 bp):
TAAAAAATTATAAAATATTATAAAAATCA
Found at i:15243804 original size:18 final size:18
Alignment explanation
Indices: 15243769--15243820 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
15243759 AAAATCGTAA
*
15243769 AAAATTATAAAATA-TTAT
1 AAAATCATAAAA-AGTTAT
15243787 AAAATCATAAAAAGTTAT
1 AAAATCATAAAAAGTTAT
15243805 AAAATGCATCAAAAAG
1 AAAAT-CAT-AAAAAG
15243821 GTCATTTACC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 1 0.03
18 20 0.67
19 3 0.10
20 6 0.20
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.27
Consensus pattern (18 bp):
AAAATCATAAAAAGTTAT
Found at i:15243818 original size:28 final size:28
Alignment explanation
Indices: 15243759--15243818 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
15243749 AAAATTATAA
* **
15243759 AAAATCGTAAAAAATTATAAAATATTAT
1 AAAATCATAAAAAATTATAAAATAGCAT
*
15243787 AAAATCATAAAAAGTTATAAAAT-GCAT
1 AAAATCATAAAAAATTATAAAATAGCAT
15243814 CAAAA
1 -AAAA
15243819 AGGTCATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.27
Consensus pattern (28 bp):
AAAATCATAAAAAATTATAAAATAGCAT
Found at i:15244031 original size:10 final size:10
Alignment explanation
Indices: 15243989--15244102 Score: 53
Period size: 9 Copynumber: 11.9 Consensus size: 10
15243979 TTTTAGTACG
15243989 ATAA-TTTTT
1 ATAATTTTTT
*
15243998 ATGA-TTTTT
1 ATAATTTTTT
15244007 AT-ATTTTTT
1 ATAATTTTTT
15244016 AT-ATTTTTT
1 ATAATTTTTT
15244025 ATAATTTTCTT
1 ATAATTTT-TT
** * *
15244036 ACGACTTTAT
1 ATAATTTTTT
* *
15244046 AAAAATTTTT
1 ATAATTTTTT
*
15244056 A-ATTTTTTT
1 ATAATTTTTT
* *
15244065 CTACA-TTTCT
1 ATA-ATTTTTT
*
15244075 AT-ATATTTT
1 ATAATTTTTT
15244084 ATAATTTTTT
1 ATAATTTTTT
*
15244094 CTAATTTTT
1 ATAATTTTT
15244103 AAATATATTT
Statistics
Matches: 79, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
8 2 0.03
9 37 0.47
10 33 0.42
11 7 0.09
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:15244113 original size:29 final size:31
Alignment explanation
Indices: 15244050--15244114 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 31
15244040 CTTTATAAAA
* *
15244050 ATTTTTAATTTTTTTCTACATTTCTATATAT
1 ATTTATAATTTTTTTCTACATTTCTAAATAT
*
15244081 -TTTATAA-TTTTTTCTA-ATTTTTAAATAT
1 ATTTATAATTTTTTTCTACATTTCTAAATAT
15244109 ATTTAT
1 ATTTAT
15244115 TAAAATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 10 0.33
29 14 0.47
30 6 0.20
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (31 bp):
ATTTATAATTTTTTTCTACATTTCTAAATAT
Found at i:15244142 original size:19 final size:19
Alignment explanation
Indices: 15244079--15244142 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
15244069 ATTTCTATAT
15244079 ATTTT-ATAATTTTTTCTAA
1 ATTTTAATAATTTTTT-TAA
* *
15244098 TTTTTAA-ATATATTTATTAA
1 ATTTTAATA-AT-TTTTTTAA
*
15244118 AATTTAATAATTTTTTTAA
1 ATTTTAATAATTTTTTTAA
*
15244137 CTTTTA
1 ATTTTA
15244143 TTTATTTTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 8
0.69 0.14 0.16
Matches are distributed among these distances:
19 16 0.47
20 13 0.38
21 5 0.15
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTTAATAATTTTTTTAA
Found at i:15245036 original size:6 final size:6
Alignment explanation
Indices: 15245012--15245067 Score: 53
Period size: 6 Copynumber: 9.2 Consensus size: 6
15245002 TGGTTGATGC
* *
15245012 TTTCAA TTTCATA TCTCAA TTTCAA TTTTCAA -TTCAA TTTCTCA TTTC-A
1 TTTCAA TTTCA-A TTTCAA TTTCAA -TTTCAA TTTCAA TTTC-AA TTTCAA
15245061 TTTCAA T
1 TTTCAA T
15245068 AGCTCGATCA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
5 10 0.24
6 16 0.38
7 16 0.38
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.52
Consensus pattern (6 bp):
TTTCAA
Found at i:15245049 original size:12 final size:13
Alignment explanation
Indices: 15245012--15245060 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
15245002 TGGTTGATGC
15245012 TTTCAATTTC-AT
1 TTTCAATTTCAAT
*
15245024 ATCTCAATTTCAAT
1 -TTTCAATTTCAAT
15245038 TTTCAA-TTCAAT
1 TTTCAATTTCAAT
15245050 TTCTC-ATTTCA
1 TT-TCAATTTCA
15245061 TTTCAATAGC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 9 0.29
13 20 0.65
14 2 0.06
ACGTcount: A:0.29, C:0.20, G:0.00, T:0.51
Consensus pattern (13 bp):
TTTCAATTTCAAT
Found at i:15245279 original size:21 final size:21
Alignment explanation
Indices: 15245255--15245314 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
15245245 GCCCAAAACG
*
15245255 ACACAAAAGGTGCCTGATACA
1 ACACAAAAGGTGTCTGATACA
** *
15245276 ACACACGAGGTGTCTGATACG
1 ACACAAAAGGTGTCTGATACA
15245297 ACACATAAA-GTGTCTGAT
1 ACACA-AAAGGTGTCTGAT
15245315 CGACAAAGCC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 31 0.97
22 1 0.03
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (21 bp):
ACACAAAAGGTGTCTGATACA
Found at i:15245651 original size:3 final size:3
Alignment explanation
Indices: 15245645--15245673 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
15245635 ATAATAATAA
15245645 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
15245674 CTTACCTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:15246395 original size:21 final size:21
Alignment explanation
Indices: 15246353--15246395 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
15246343 AATTGCTACC
*
15246353 TGTTTCTTTTCTTCTTTGTTT
1 TGTTTCTTTTCTTCTTTATTT
*
15246374 TGTTTC-TTTCTTTTTTTATTT
1 TGTTTCTTTTC-TTCTTTATTT
15246395 T
1 T
15246396 ACTTTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.02, C:0.12, G:0.07, T:0.79
Consensus pattern (21 bp):
TGTTTCTTTTCTTCTTTATTT
Found at i:15246427 original size:3 final size:3
Alignment explanation
Indices: 15246419--15246450 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
15246409 TATATTAGTT
15246419 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
15246451 TAATAATAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:15246469 original size:5 final size:5
Alignment explanation
Indices: 15246453--15246482 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
15246443 AACAACAATA
15246453 ATAAT AATAAT ATAAT ATAAT ATAAT ATAA
1 ATAAT -ATAAT ATAAT ATAAT ATAAT ATAA
15246483 ATATCTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
ATAAT
Found at i:15246893 original size:5 final size:5
Alignment explanation
Indices: 15246885--15246933 Score: 64
Period size: 5 Copynumber: 10.0 Consensus size: 5
15246875 TATTTATTTC
* * *
15246885 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT -TATT ATAAT TTAAC ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
15246934 TAAGTTTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
4 3 0.08
5 34 0.92
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (5 bp):
ATAAT
Found at i:15249344 original size:13 final size:13
Alignment explanation
Indices: 15249326--15249367 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
15249316 TTTAATATTT
15249326 TTATTTTCAAATA
1 TTATTTTCAAATA
15249339 TTATTTT-ATAGATA
1 TTATTTTCA-A-ATA
15249353 TTATTTTCAAATA
1 TTATTTTCAAATA
15249366 TT
1 TT
15249368 TGTAATCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.04
13 13 0.50
14 11 0.42
15 1 0.04
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (13 bp):
TTATTTTCAAATA
Found at i:15250101 original size:24 final size:22
Alignment explanation
Indices: 15250057--15250101 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
15250047 TTTTATTTCA
*
15250057 TTTTTATATTTTAACTTAATAT
1 TTTTTATATTTTAACTAAATAT
*
15250079 TTTTTATAATTTTTACGTAAATA
1 TTTTTAT-ATTTTAAC-TAAATA
15250102 GGAGAAAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 7 0.37
24 5 0.26
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.60
Consensus pattern (22 bp):
TTTTTATATTTTAACTAAATAT
Found at i:15254999 original size:21 final size:21
Alignment explanation
Indices: 15254974--15255028 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
15254964 AGCATTTTAT
15254974 ACTTATTTTCAACTCCCCCAA
1 ACTTATTTTCAACTCCCCCAA
15254995 ACTTATTTTCAACTCCCCCAA
1 ACTTATTTTCAACTCCCCCAA
15255016 ACTTATTTTCAAC
1 ACTTATTTTCAAC
15255029 AAATACTTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.36
Consensus pattern (21 bp):
ACTTATTTTCAACTCCCCCAA
Found at i:15258347 original size:50 final size:50
Alignment explanation
Indices: 15258283--15258391 Score: 157
Period size: 50 Copynumber: 2.2 Consensus size: 50
15258273 TAAATGACCA
* * *
15258283 TGTATATTCGGCCACACAGGTTTG-AGCATATGTGATGTTATATTTGATCT
1 TGTATATTCAGCCACACAGGTATGTA-CATATGTGATGTTATATTTGATAT
*
15258333 TGTATATTCAGCCACATAGGTATGTACATATGTGATGTTATATTTGATAT
1 TGTATATTCAGCCACACAGGTATGTACATATGTGATGTTATATTTGATAT
*
15258383 TGTGTATTC
1 TGTATATTC
15258392 GGTTAAATGA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
50 52 0.98
51 1 0.02
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (50 bp):
TGTATATTCAGCCACACAGGTATGTACATATGTGATGTTATATTTGATAT
Found at i:15260239 original size:24 final size:24
Alignment explanation
Indices: 15260192--15260239 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
15260182 CACAAAATTT
* *
15260192 ATTAATAATTCAGTAAACTGAAAA
1 ATTAATAATTCAATAAAATGAAAA
* *
15260216 ATTAATAATTGAATAAAATTAAAA
1 ATTAATAATTCAATAAAATGAAAA
15260240 TTTGGGAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.31
Consensus pattern (24 bp):
ATTAATAATTCAATAAAATGAAAA
Found at i:15268452 original size:46 final size:47
Alignment explanation
Indices: 15268288--15268792 Score: 759
Period size: 46 Copynumber: 10.9 Consensus size: 47
15268278 AAATGATAGT
*
15268288 AAGGCCTAAAGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATA
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA-A
*
15268336 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 --AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAA
*
15268385 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-AA
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAA
15268431 AAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATATGTGTGATA
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA-A
15268478 GTAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTG-A
1 --AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAA
* *
15268525 TAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAA
15268572 AAGGCCTAATGGCCGATTGTGATG-ATGTGAAAGTGTA-ATGTGT-AA
1 AAGGCCTAATGGCCGA-TGTGATGAATGTGAAAGTGTATATGTGTGAA
*
15268617 TAAGGCCTAATGGCCGATGTGATGAAT-TGAAAGTGTATATGTGTGAT
1 -AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAA
*
15268664 AAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATGTGTGAT
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAA
*
15268710 AAGGCCTAATGGCCGATGTGATGAA-GTGAAAGTG-ATATATGT-AA
1 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAA
15268754 TAAGG-CTAATGGCCGATGTGATGAA-GTGAAAGTGTATAT
1 -AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
15268793 ATGGATAAGT
Statistics
Matches: 427, Mismatches: 12, Indels: 37
0.90 0.03 0.08
Matches are distributed among these distances:
44 30 0.07
45 46 0.11
46 181 0.42
47 75 0.18
48 36 0.08
49 14 0.03
50 45 0.11
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAA
Found at i:15268624 original size:187 final size:187
Alignment explanation
Indices: 15268281--15268795 Score: 841
Period size: 187 Copynumber: 2.8 Consensus size: 187
15268271 GAATATGAAA
*
15268281 TGATAGTAAGGCCTAAAGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAGTAAGGCCTA
1 TGATAGTAA-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTG--A-TAAGGCCTA
15268346 ATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAAT
62 ATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATG-AT
15268411 GTGAAAGTGTATATATGTAAAAGGCCTAATGGCCGATGTGATGAATGTGAAA-TGTATATGTG
126 GTGAAAGTGTATATATGTAAAAGGCCTAATGGCCGATGTGATGAAT-TGAAAGTGTATATGTG
15268473 TGATAGTAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT-AGGCCTAATGG
1 TGATAGTAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
15268537 CCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATTGTGATGATGTGA
66 CCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGA-TGTGATGATGTGA
*
15268602 AAGTGTA-ATGTGTAATAAGGCCTAATGGCCGATGTGATGAATTGAAAGTGTATATGTG
130 AAGTGTATATATGTAA-AAGGCCTAATGGCCGATGTGATGAATTGAAAGTGTATATGTG
*
15268660 TGATA--AGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
1 TGATAGTAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
* * *
15268722 CCGATGTGATGAA-GTGAAAGTG-ATATATGTAATAAGG-CTAATGGCCGATGTGATGAAGTGAA
66 CCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGATGTGAA
15268784 AGTGTATATATG
131 AGTGTATATATG
15268796 GATAAGTCCC
Statistics
Matches: 311, Mismatches: 7, Indels: 20
0.92 0.02 0.06
Matches are distributed among these distances:
181 19 0.06
182 15 0.05
183 13 0.04
184 32 0.10
185 45 0.14
186 12 0.04
187 116 0.37
188 8 0.03
189 1 0.00
191 41 0.13
192 9 0.03
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (187 bp):
TGATAGTAAGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGATGTGAA
AGTGTATATATGTAAAAGGCCTAATGGCCGATGTGATGAATTGAAAGTGTATATGTG
Done.