Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 53 of 211
Found at i:16012329 original size:290 final size:291
Alignment explanation
Indices: 16011798--16012350 Score: 815
Period size: 290 Copynumber: 1.9 Consensus size: 291
16011788 AATTTGCTTA
* * * * * *
16011798 TCTAAACTATATTTAAGCACTTTATTGAGTTGGTGTCACCCTTAACCGGGTCACTAACTCAGCTA
1 TCTAAACTACATTTAAGCACTGTACTGAGTTGGTGTCACACTTAACCGGCTCACCAACTCAGCTA
* * * * *
16011863 TGAAATTATAAAAATATCTCTTCTTTTAAGTTATAATTAATATTAGTATGATGACACTTTTTTCA
66 CGAAATTACAAAAATACCTATTCTTTTAAATTATAATTAATATTAGTATGATGACACTTTTTTCA
* * * *
16011928 TTTCATACTTTTGTGTCATCTTTAATTAAAAGATTAAAAATTACAAATCCAAGGATTGACCACAT
131 TTTCATACTTTTATATCACCTTTAAATAAAAGATTAAAAATTACAAATCCAAGGATTGACCACAT
* *
16011993 GTTCAATAGTATTAAAATACAAGTTCATTACGACTCCACTTATATTCATTATTGAAT-AATTTTA
196 GTTCAATAGTATTAAAATACAAGTTCATTACCACTCCACCTATATTCATTATTGAATAAATTTTA
16012057 ACAGATTAACATACAATATTTTCATTCATCT
261 ACAGATTAACATACAATATTTTCATTCATCT
* * * * *
16012088 TCTATACTACATTTAAGCACTGTGCTGAGTTGGTGTCACACTT-AGCGGCTCACCAACTCTGTTA
1 TCTAAACTACATTTAAGCACTGTACTGAGTTGGTGTCACACTTAACCGGCTCACCAACTCAGCTA
* * * *
16012152 CGAGATTACAGAAATACCTATTCTTTTAAATTATAATTAATATTATTATGATGACACTTTTTTCT
66 CGAAATTACAAAAATACCTATTCTTTTAAATTATAATTAATATTAGTATGATGACACTTTTTTCA
*
16012217 TTTCATACTTTTATATTACCTTTAAATAAAAGAATTAAAAATTACAAATCCAAGGATTGGA-CAC
131 TTTCATACTTTTATATCACCTTTAAATAAAAG-ATTAAAAATTACAAATCCAAGGATT-GACCAC
*
16012281 ATGTTCAATAGTATTAAAATACAAGTTCATTACCACTCGACCTATATTCATTATTGAATAAATTT
194 ATGTTCAATAGTATTAAAATACAAGTTCATTACCACTCCACCTATATTCATTATTGAATAAATTT
16012346 TAACA
259 TAACA
16012351 AAAAATATTT
Statistics
Matches: 232, Mismatches: 28, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
289 99 0.43
290 121 0.52
291 12 0.05
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (291 bp):
TCTAAACTACATTTAAGCACTGTACTGAGTTGGTGTCACACTTAACCGGCTCACCAACTCAGCTA
CGAAATTACAAAAATACCTATTCTTTTAAATTATAATTAATATTAGTATGATGACACTTTTTTCA
TTTCATACTTTTATATCACCTTTAAATAAAAGATTAAAAATTACAAATCCAAGGATTGACCACAT
GTTCAATAGTATTAAAATACAAGTTCATTACCACTCCACCTATATTCATTATTGAATAAATTTTA
ACAGATTAACATACAATATTTTCATTCATCT
Found at i:16017460 original size:23 final size:23
Alignment explanation
Indices: 16017413--16017466 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
16017403 GCTGAAAATA
16017413 AAAACCCT--AGAAAAGGAAGAG
1 AAAACCCTAAAGAAAAGGAAGAG
*
16017434 AAAACTCCTAAAGAAAATGAA-AG
1 AAAAC-CCTAAAGAAAAGGAAGAG
16017457 AAAACCCTAA
1 AAAACCCTAA
16017467 GCTAAACGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.17
22 8 0.28
23 7 0.24
24 9 0.31
ACGTcount: A:0.59, C:0.17, G:0.15, T:0.09
Consensus pattern (23 bp):
AAAACCCTAAAGAAAAGGAAGAG
Found at i:16027557 original size:64 final size:64
Alignment explanation
Indices: 16027483--16027608 Score: 234
Period size: 64 Copynumber: 2.0 Consensus size: 64
16027473 TCGGATTAGG
*
16027483 GTTACGAGGCATTACTGAACAAATCATAGTTCATCACAATCATTTATTACAATTCATGCACAGA
1 GTTACGAGGCATTACTGAACAAAACATAGTTCATCACAATCATTTATTACAATTCATGCACAGA
*
16027547 GTTACGAGGCATTACTGAACAAAACATAGTTCATCACAATCGTTTATTACAATTCATGCACA
1 GTTACGAGGCATTACTGAACAAAACATAGTTCATCACAATCATTTATTACAATTCATGCACA
16027609 AAATTATAAT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 60 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (64 bp):
GTTACGAGGCATTACTGAACAAAACATAGTTCATCACAATCATTTATTACAATTCATGCACAGA
Found at i:16033800 original size:21 final size:22
Alignment explanation
Indices: 16033760--16033800 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
16033750 AAAAAACAAA
* *
16033760 AAGTAAATTGAAATAAAAAATG
1 AAGTAAACTGAAACAAAAAATG
16033782 AAGTAAACT-AAACAAAAAA
1 AAGTAAACTGAAACAAAAAA
16033801 GTATTAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (22 bp):
AAGTAAACTGAAACAAAAAATG
Found at i:16045838 original size:4 final size:4
Alignment explanation
Indices: 16045829--16045870 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
16045819 TTAAACTAAG
16045829 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA
16045871 TAAAACTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Found at i:16050876 original size:24 final size:23
Alignment explanation
Indices: 16050752--16050945 Score: 74
Period size: 24 Copynumber: 8.2 Consensus size: 23
16050742 CTCTGATTAG
* * *
16050752 TATTGTTTT-AATATATAATATAC
1 TATTATTTTAAAT-TATCATATAT
* * *
16050775 TATTACTTTAAATCATCAT-TAG
1 TATTATTTTAAATTATCATATAT
*
16050797 TATTA-TTTAAACTTATCATACAT
1 TATTATTTTAAA-TTATCATATAT
*** * * *
16050820 TATGGCTTGAAATTTATTATATAC
1 TATTATTTTAAA-TTATCATATAT
16050844 TA-TAGTTTTAAACTTATCATATAT
1 TATTA-TTTTAAA-TTATCATATAT
* * * *
16050868 TATTATTTTAGATGCATTATGTAT
1 TATTATTTTAAAT-TATCATATAT
*
16050892 TCA-TATTTTTAAAGTTATCATATGT
1 T-ATTA-TTTTAAA-TTATCATATAT
* * *
16050917 TATTATTTCAAAATTATTATGTAT
1 TATTATTT-TAAATTATCATATAT
16050941 TATTA
1 TATTA
16050946 CTTAAAGATA
Statistics
Matches: 124, Mismatches: 35, Indels: 23
0.68 0.19 0.13
Matches are distributed among these distances:
21 6 0.05
22 13 0.10
23 16 0.13
24 67 0.54
25 21 0.17
26 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.51
Consensus pattern (23 bp):
TATTATTTTAAATTATCATATAT
Found at i:16055963 original size:15 final size:15
Alignment explanation
Indices: 16055943--16055975 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
16055933 AATCAAAGTC
16055943 AAAATGAAAAAGGAA
1 AAAATGAAAAAGGAA
*
16055958 AAAATGAAAAAGTAA
1 AAAATGAAAAAGGAA
16055973 AAA
1 AAA
16055976 TGGAGAGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (15 bp):
AAAATGAAAAAGGAA
Found at i:16055976 original size:14 final size:14
Alignment explanation
Indices: 16055937--16055977 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
16055927 AATCAAAATC
*
16055937 AAAGTCAAAATGAA
1 AAAGTAAAAATGAA
*
16055951 AAAGGAAAAAATGAA
1 AAA-GTAAAAATGAA
16055966 AAAGTAAAAATG
1 AAAGTAAAAATG
16055978 GAGAGGCTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.68, C:0.02, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAGTAAAAATGAA
Found at i:16057568 original size:128 final size:128
Alignment explanation
Indices: 16057398--16057869 Score: 680
Period size: 128 Copynumber: 3.7 Consensus size: 128
16057388 TTCTATCTCT
* * * *
16057398 CTGGGCAGCAGTGGAATAGATT-AAAGATTACAGATCTTGTCTCCAC-AAGCAGTAGCGGAGCAG
1 CTGGTCAGCAGTGGAGTAGGTTGGAA-ATTACAGATCTTGTCTCC-CTAAGCAGTAGCGGAGCAG
* *
16057461 ATCGAAGACGGCGAATCTTATCTTCAAGTGTAAGGAAGTAGATTTAAGCCACAAGTCCTATGTCC
64 ATCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCC
* * *
16057526 CTGGTCAGTAGTGGAGTAGGTT-GAAGATTATAGATCTTGTCTCCCTAAGCAGTAGCGGAGTAGA
1 CTGGTCAGCAGTGGAGTAGGTTGGAA-ATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGA
* * * *
16057590 TCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAACAATAAGTTCTATGTCC
65 TCGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCC
*
16057654 CTGGTCAGCAGTGGAGTAGGTTGGAAATTACAAATCTTGTCTCCCTAAGCAGTAGCGGAGCAGAT
1 CTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGAT
* * * * *
16057719 CAAAGATGACAAATCTTATTTTCTAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCC
66 CGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCC
* * *
16057782 CTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGGTCTCGTCTCCCTAAGCAGTAGCGAAGCAGAT
1 CTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGAT
* *
16057847 CGAAGATGGCGAATCTTATCTTC
66 CGAAGACGACGAATCTTATCTTC
16057870 CTGAGATTAT
Statistics
Matches: 308, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
127 1 0.00
128 304 0.99
129 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (128 bp):
CTGGTCAGCAGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGCAGTAGCGGAGCAGAT
CGAAGACGACGAATCTTATCTTCAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATGTCC
Found at i:16058206 original size:100 final size:100
Alignment explanation
Indices: 16058046--16058423 Score: 524
Period size: 100 Copynumber: 3.8 Consensus size: 100
16058036 TATCCCCCAG
* * * * * * *
16058046 GCGATGCAGTGGAATAGATTAACGCCACAACAGTGAAACTTGCTCCCCCGACATTGCAGTTAAAA
1 GCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTACAGTTAAAA
16058111 AGATTAAAGCTACCACAGTGAATCTTACTTCTCAA
66 AGATTAAAGCTACCACAGTGAATCTTACTTCTCAA
* * * * *
16058146 GCGGTGCAGTGGAACAGATTAATGCCACAAT-GGTGAACCTTGCTTCCCTGATATTACAGTTAAA
1 GCGATGCAGTGGAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCCGACATTACAGTTAAA
*
16058210 AAGATTAAAGCTACCACAGTGAATCTTACTTCTCGA
65 AAGATTAAAGCTACCACAGTGAATCTTACTTCTCAA
* * *
16058246 GCGATCCAGTGGAACAGATTAAAGCCACATCGGTGAATTTTGTTTCCCCGACATTACAGTTAAAA
1 GCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTACAGTTAAAA
* * *
16058311 AGATCAAAGCTACAACAGTGAATCTTATTTCTCAA
66 AGATTAAAGCTACCACAGTGAATCTTACTTCTCAA
* * * *
16058346 GTGATGCAGTGGAACAGGTTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTCAAA
1 GCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTACAGTTAAAA
*
16058411 AGATTGAAGCTAC
66 AGATTAAAGCTAC
16058424 AATGGCGAAT
Statistics
Matches: 244, Mismatches: 32, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
99 2 0.01
100 241 0.99
101 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (100 bp):
GCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTACAGTTAAAA
AGATTAAAGCTACCACAGTGAATCTTACTTCTCAA
Found at i:16058404 original size:50 final size:50
Alignment explanation
Indices: 16058050--16058420 Score: 198
Period size: 50 Copynumber: 7.4 Consensus size: 50
16058040 CCCCAGGCGA
* * * * *
16058050 TGCAGTGGAATAGATTAACGCCACAACAGTGAAACTTGCTCCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACAT
** * * * * **
16058100 TGCAGTTAAAAAGATTAAAGCTACCA-CAGTGAATCTTACTT-CTCAAGCGG
1 TGCAGTGGAAAAGATTAAAGCCA-CATCAGTGAATCTTGCTTCCCCGA-CAT
* * * * * *
16058150 TGCAGTGGAACAGATTAATGCCACAAT-GGTGAACCTTGCTTCCCTGATAT
1 TGCAGTGGAAAAGATTAAAGCCAC-ATCAGTGAATCTTGCTTCCCCGACAT
* ** * * *
16058200 TACAGTTAAAAAGATTAAAGCTACCA-CAGTGAATCTTACTT-CTCGAGCGA-
1 TGCAGTGGAAAAGATTAAAGCCA-CATCAGTGAATCTTGCTTCCCCGA-C-AT
* * * * *
16058250 TCCAGTGGAACAGATTAAAGCCACATCGGTGAATTTTGTTTCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACAT
* ** * * * ** ** **
16058300 TACAGTTAAAAAGATCAAAGCTACAACAGTGAATCTTATTTCTCAAGTGA-
1 TGCAGTGGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTC-CCCGACAT
* * *
16058350 TGCAGTGGAACAGGTTAAAGCCACATCGGTGAATCTTGCTTCCCCGACAT
1 TGCAGTGGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACAT
** *
16058400 TGCAGTTCAAAAGATTGAAGC
1 TGCAGTGGAAAAGATTAAAGC
16058421 TACAATGGCG
Statistics
Matches: 225, Mismatches: 82, Indels: 28
0.67 0.24 0.08
Matches are distributed among these distances:
49 13 0.06
50 199 0.88
51 13 0.06
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (50 bp):
TGCAGTGGAAAAGATTAAAGCCACATCAGTGAATCTTGCTTCCCCGACAT
Found at i:16059975 original size:24 final size:23
Alignment explanation
Indices: 16059851--16060044 Score: 76
Period size: 24 Copynumber: 8.2 Consensus size: 23
16059841 CTCTGATTAG
* * *
16059851 TATTGTTTT-AATATATAATATAC
1 TATTATTTTAAAT-TATCATATAT
* * *
16059874 TATTACTTTAAATCATCAT-TAG
1 TATTATTTTAAATTATCATATAT
*
16059896 TATTA-TTTAAACTTATCATACAT
1 TATTATTTTAAA-TTATCATATAT
* * * *
16059919 TA-TAGCTTGAAATTTATTATATAC
1 TATTA-TTTTAAA-TTATCATATAT
16059943 TA-TAGTTTTAAACTTATCATATAT
1 TATTA-TTTTAAA-TTATCATATAT
* * * *
16059967 TATTATTTTAGATGCATTATGTAT
1 TATTATTTTAAAT-TATCATATAT
*
16059991 T-TGTATTTTTAAAGTTATCATATGT
1 TAT-TA-TTTTAAA-TTATCATATAT
* * *
16060016 TATTATTTCAAAATTATTATGTAT
1 TATTATTT-TAAATTATCATATAT
16060040 TATTA
1 TATTA
16060045 CTTAAAGATA
Statistics
Matches: 128, Mismatches: 31, Indels: 23
0.70 0.17 0.13
Matches are distributed among these distances:
21 6 0.05
22 15 0.12
23 16 0.12
24 69 0.54
25 20 0.16
26 2 0.02
ACGTcount: A:0.36, C:0.07, G:0.06, T:0.51
Consensus pattern (23 bp):
TATTATTTTAAATTATCATATAT
Found at i:16062736 original size:17 final size:18
Alignment explanation
Indices: 16062714--16062747 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
16062704 TCTTCTCTTC
16062714 TTCTTT-TCTTTTTTTTA
1 TTCTTTCTCTTTTTTTTA
16062731 TTCTTTCTCTTTTTTTT
1 TTCTTTCTCTTTTTTTT
16062748 TCACGAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (18 bp):
TTCTTTCTCTTTTTTTTA
Found at i:16063160 original size:12 final size:12
Alignment explanation
Indices: 16063145--16063170 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
16063135 TATGATTTAC
16063145 AAACTTTATTAA
1 AAACTTTATTAA
16063157 AAACTTTATTAA
1 AAACTTTATTAA
16063169 AA
1 AA
16063171 GTAACATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (12 bp):
AAACTTTATTAA
Found at i:16068594 original size:21 final size:22
Alignment explanation
Indices: 16068570--16068614 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
16068560 TATTTAACCC
*
16068570 AAAATAAATTGGATTA-AAATT
1 AAAATAAATTAGATTATAAATT
* *
16068591 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
16068613 AA
1 AA
16068615 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:16069934 original size:128 final size:128
Alignment explanation
Indices: 16069745--16069989 Score: 316
Period size: 128 Copynumber: 1.9 Consensus size: 128
16069735 TTTGACGCGA
* * * *
16069745 TCTGCTCTACTGTAATTTCAGAGAGATAAGATCCATCATTTTAATCCACTCCGCTACAACTTTAG
1 TCTGCTCTACTGCAATTTCAGAGAGATAAGATCCAACATTTTAATCCACTCCACTACAACTTCAG
* * *
16069810 GGAGATAGGATTTGTTTA-TTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGT
66 GGAGATAGGA-TT-ATCACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGT
** * * **
16069874 TCTGCTCT-CTGCAACTTT-AGAGAGATAAGATCCAAGGTTTTAATTCGCTCCACTGTAACTTCA
1 TCTGCTCTACTGCAA-TTTCAGAGAGATAAGATCCAACATTTTAATCCACTCCACTACAACTTCA
16069937 GGGAGATAGGATTATCAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
65 GGGAGATAGGATTATCA-CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
16069990 AATTTGCCAT
Statistics
Matches: 100, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
126 2 0.02
127 2 0.02
128 85 0.85
129 11 0.11
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (128 bp):
TCTGCTCTACTGCAATTTCAGAGAGATAAGATCCAACATTTTAATCCACTCCACTACAACTTCAG
GGAGATAGGATTATCACTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGT
Found at i:16070081 original size:44 final size:43
Alignment explanation
Indices: 16069801--16070081 Score: 157
Period size: 44 Copynumber: 6.5 Consensus size: 43
16069791 CACTCCGCTA
* * * *
16069801 CAACTTTAGGGAGATAGGATTTGTTTATTTAGTCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTG-TTACTTAGTCTGCTCCACTG
* * * * *
16069845 CAACTTCAGGGAGATAAGACTAGATGCGT--TCTGCT-CTCTG
1 CAACTTCAGGGAGATAAGACTTGTTACTTAGTCTGCTCCACTG
* * ** *
16069885 CAACTTTAGAGAGATAAGATCCAAGGTT--TTAAT-TCGCTCCACTG
1 CAACTTCAGGGAGATAAGA--C-TTGTTACTTAGTCT-GCTCCACTG
* * * * *
16069929 TAACTTCAGGGAGATAGGA-TTATCAGCTTTAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGACTTGTTA-C-TTAGTCTGCTCCACTG
* * ** *
16069973 CAACTTCAGGGAGATAAAATTTGCCATCTTCAGTTTGC-CTCACTG
1 CAACTTCAGGGAGATAAGACTTGTTA-CTT-AGTCTGCTC-CACTG
*
16070018 CAACTTCA-GGAGGATAAGACTTGTTTACTTAGTCTGCTCCATTG
1 CAACTTCAGGGA-GATAAGACTTG-TTACTTAGTCTGCTCCACTG
*
16070062 CAACTTTAGGGAGATAAGAC
1 CAACTTCAGGGAGATAAGAC
16070082 CAGAGAAATA
Statistics
Matches: 179, Mismatches: 39, Indels: 38
0.70 0.15 0.15
Matches are distributed among these distances:
40 22 0.12
41 7 0.04
42 2 0.01
43 8 0.04
44 99 0.55
45 40 0.22
46 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (43 bp):
CAACTTCAGGGAGATAAGACTTGTTACTTAGTCTGCTCCACTG
Found at i:16070251 original size:88 final size:88
Alignment explanation
Indices: 16070102--16070420 Score: 455
Period size: 88 Copynumber: 3.6 Consensus size: 88
16070092 AGATCTAAGG
* * * * * *
16070102 TTTTAATCTGCTCCACTGCAACCTCA-GGAAG-ATAGGATTGGGGTCATCGATCTGTTTCGCTGT
1 TTTTAACCTGCTCCACTGCAACC-CAGGGAGGCA-AGG-CTGGTGTCTTCGATCTGCTTCGCTGT
16070165 CAGTGCAGGAAGGCAAGATCTGCTAT
63 CAGTGCAGGAAGGCAAGATCTGCTAT
* *
16070191 TTTTAACCTGCTCTACTGCAACCTAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAG
1 TTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAG
16070256 TGCAGGAAGGCAAGATCTGCTA-
66 TGCAGGAAGGCAAGATCTGCTAT
* * * * *
16070278 TTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTTTTCGATCTGTTTCGCTGTCGG
1 TTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAG
16070343 TGCAGGAAGGCAAGATCTGCTAT
66 TGCAGGAAGGCAAGATCTGCTAT
* *
16070366 TTCTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGATCTGCT
1 TTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCT
16070421 ATTTTTAACC
Statistics
Matches: 206, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
87 80 0.39
88 97 0.47
89 28 0.14
90 1 0.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (88 bp):
TTTTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAG
TGCAGGAAGGCAAGATCTGCTAT
Found at i:16070267 original size:44 final size:43
Alignment explanation
Indices: 16070219--16070356 Score: 116
Period size: 44 Copynumber: 3.2 Consensus size: 43
16070209 CAACCTAGGG
16070219 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCAGTGCAGGA
1 AGGCAAGGCTGGTGT-TTCGATCTGCTTCGCTGTCAGTGCAGGA
* * * ** * * * *** *
16070263 AGGCAAGATCTGCTATTTTAACCTGCTCCGCT-ACAACCCAGGG
1 AGGCAAG-GCTGGTGTTTCGATCTGCTTCGCTGTCAGTGCAGGA
* *
16070306 AGGCAAGGCTGGTGTTTTCGATCTGTTTCGCTGTCGGTGCAGGA
1 AGGCAAGGCTGGTG-TTTCGATCTGCTTCGCTGTCAGTGCAGGA
16070350 AGGCAAG
1 AGGCAAG
16070357 ATCTGCTATT
Statistics
Matches: 65, Mismatches: 26, Indels: 6
0.67 0.27 0.06
Matches are distributed among these distances:
42 4 0.06
43 25 0.38
44 31 0.48
45 5 0.08
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (43 bp):
AGGCAAGGCTGGTGTTTCGATCTGCTTCGCTGTCAGTGCAGGA
Found at i:16070444 original size:57 final size:57
Alignment explanation
Indices: 16070356--16070474 Score: 193
Period size: 57 Copynumber: 2.1 Consensus size: 57
16070346 AGGAAGGCAA
* * *
16070356 GATCTGCTATTTCTAACCTGCTCCACTGCAACCCAGGGAGGCAAGGCTGGTGTCTTT
1 GATCTGCTATTTCTAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGTGTCTTC
* *
16070413 GATCTGCTATTTTTAACCTACTCCGCTGCAACCCAGGGAGACAAGGCTGGTGTCTTC
1 GATCTGCTATTTCTAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGTGTCTTC
16070470 GATCT
1 GATCT
16070475 ACTTCGCTGT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.29
Consensus pattern (57 bp):
GATCTGCTATTTCTAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGTGTCTTC
Found at i:16077198 original size:80 final size:80
Alignment explanation
Indices: 16077097--16077361 Score: 319
Period size: 80 Copynumber: 3.3 Consensus size: 80
16077087 GCTCCTCGTT
* **
16077097 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCC
*
16077160 GAATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
*
16077177 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
*
16077241 GATTTAGTATCTCGCA
65 GATTTAGTAACTCGCA
*
16077257 CAAATGCCTTC-GGATCTTA-CTCCAGATT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTC
1 CAAATGCCTTCGGGA-CTTAGC-CC-GGTTATAGTATCTCGCACAAATGCCTTCGGATCTTAGTC
* * * *
16077319 CGGATATGGTCACTTAGCA
63 CGGATTTAGTAAC-TCGCA
16077338 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
16077362 ACATCATTCA
Statistics
Matches: 161, Mismatches: 14, Indels: 21
0.82 0.07 0.11
Matches are distributed among these distances:
79 11 0.07
80 137 0.85
81 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
ATTTAGTAACTCGCA
Found at i:16077362 original size:40 final size:40
Alignment explanation
Indices: 16077097--16077362 Score: 287
Period size: 40 Copynumber: 6.7 Consensus size: 40
16077087 GCTCCTCGTT
* *
16077097 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATCTCGCA
* * * *
16077137 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTATCTCGCA
16077177 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTATCTCGCA
* *
16077217 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTATCTCGCA
* *
16077257 CAAATGCCTTC-GGATCTTA-CTCCAGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGC-CCGGATATAGTATCTCGCA
* * *
16077297 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ATC-TCGCA
16077338 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
16077363 CATCATTCAA
Statistics
Matches: 197, Mismatches: 20, Indels: 18
0.84 0.09 0.08
Matches are distributed among these distances:
39 4 0.02
40 181 0.92
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATCTCGCA
Found at i:16077362 original size:120 final size:121
Alignment explanation
Indices: 16077097--16077362 Score: 320
Period size: 120 Copynumber: 2.2 Consensus size: 121
16077087 GCTCCTCGTT
*
16077097 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
*
16077161 AATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
66 AATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTAGCA
*
16077217 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTT-AC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAAC
* * *
16077277 TCC-AGATTTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCA-CTTAGCA
63 -CCGA-ATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGT-ATC-TAGCA
16077338 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
16077363 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 22
0.82 0.04 0.14
Matches are distributed among these distances:
119 16 0.12
120 98 0.77
121 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
AATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTAGCA
Found at i:16085701 original size:21 final size:19
Alignment explanation
Indices: 16085660--16085709 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
16085650 GCAAAGTATC
*
16085660 AAATAAATAACAATATGAAA
1 AAATAAATAACAAAAT-AAA
*
16085680 ACATAAATCAACAAAATAAA
1 AAATAAAT-AACAAAATAAA
16085700 AAATAAATAA
1 AAATAAATAA
16085710 AGAAAAGAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.08
20 17 0.65
21 7 0.27
ACGTcount: A:0.72, C:0.08, G:0.02, T:0.18
Consensus pattern (19 bp):
AAATAAATAACAAAATAAA
Found at i:16085715 original size:20 final size:20
Alignment explanation
Indices: 16085660--16085715 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
16085650 GCAAAGTATC
*
16085660 AAATAAAT-AACAATATGAAA
1 AAATAAATAAACAAAAT-AAA
* *
16085680 ACATAAATCAACAAAATAAA
1 AAATAAATAAACAAAATAAA
*
16085700 AAATAAATAAAGAAAA
1 AAATAAATAAACAAAA
16085716 GAGAGCGCGT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
20 23 0.77
21 7 0.23
ACGTcount: A:0.73, C:0.07, G:0.04, T:0.16
Consensus pattern (20 bp):
AAATAAATAAACAAAATAAA
Found at i:16086093 original size:23 final size:22
Alignment explanation
Indices: 16086046--16086091 Score: 76
Period size: 23 Copynumber: 2.1 Consensus size: 22
16086036 AAATATTAGT
16086046 TAAAAAATAAATATGTACATGTA
1 TAAAAAATAAATA-GTACATGTA
16086069 TAAAAAATAAATA-TACATGTA
1 TAAAAAATAAATAGTACATGTA
16086090 TA
1 TA
16086092 TATATAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.43
23 13 0.57
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (22 bp):
TAAAAAATAAATAGTACATGTA
Found at i:16090189 original size:20 final size:19
Alignment explanation
Indices: 16090156--16090199 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
16090146 TGAAACAAAC
*
16090156 ACCCAACCAAACCAGAACTA
1 ACCCAACCAAACCA-AACCA
**
16090176 ACCCAACCCGACCAAACCA
1 ACCCAACCAAACCAAACCA
16090195 ACCCA
1 ACCCA
16090200 CCCTATCCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.45, C:0.48, G:0.05, T:0.02
Consensus pattern (19 bp):
ACCCAACCAAACCAAACCA
Found at i:16090615 original size:18 final size:17
Alignment explanation
Indices: 16090579--16090620 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
16090569 ATTTCTCTAT
16090579 AAATAAATAAATAAGAAA
1 AAATAAATAAAT-AGAAA
*
16090597 AAATAAATTAAAT-TAAA
1 AAATAAA-TAAATAGAAA
16090614 AAATAAA
1 AAATAAA
16090621 ATATATACAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 10 0.45
18 7 0.32
19 5 0.23
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.21
Consensus pattern (17 bp):
AAATAAATAAATAGAAA
Found at i:16096807 original size:15 final size:16
Alignment explanation
Indices: 16096776--16096809 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
16096766 TAAAAAATTA
*
16096776 TTATGCATTTCATTTT
1 TTATACATTTCATTTT
16096792 TTATACATTT-ATTTT
1 TTATACATTTCATTTT
16096807 TTA
1 TTA
16096810 ATATTTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.65
Consensus pattern (16 bp):
TTATACATTTCATTTT
Found at i:16103425 original size:17 final size:17
Alignment explanation
Indices: 16103399--16103431 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
16103389 TCCCAGATTT
*
16103399 TGATAGCCATATCTTTC
1 TGATACCCATATCTTTC
16103416 TGATACCCATATCTTT
1 TGATACCCATATCTTT
16103432 GACTTTCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.09, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:16106972 original size:17 final size:17
Alignment explanation
Indices: 16106950--16106982 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
16106940 TCCCAGATTT
16106950 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
16106967 TGATACCCATATCTTT
1 TGATACCCATATCTTT
16106983 GACTTTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.27, G:0.06, T:0.42
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:16111234 original size:38 final size:38
Alignment explanation
Indices: 16111192--16111270 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
16111182 GACTGATTGT
*
16111192 TTTGGCAATTCCATGCATTCATGCATATTCAACCATCA
1 TTTGGAAATTCCATGCATTCATGCATATTCAACCATCA
16111230 TTTGGAAATTCCATGCATTCATGCATATTCAACCATCA
1 TTTGGAAATTCCATGCATTCATGCATATTCAACCATCA
16111268 TTT
1 TTT
16111271 ACTTAAGGTC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (38 bp):
TTTGGAAATTCCATGCATTCATGCATATTCAACCATCA
Found at i:16115885 original size:17 final size:17
Alignment explanation
Indices: 16115863--16115903 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
16115853 TCTACGAAGT
16115863 CCTTCTCCACAAAATTA
1 CCTTCTCCACAAAATTA
16115880 CCTTCTCCACAAAATTA
1 CCTTCTCCACAAAATTA
16115897 CCATTCT
1 CC-TTCT
16115904 TATCTTGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.32, C:0.37, G:0.00, T:0.32
Consensus pattern (17 bp):
CCTTCTCCACAAAATTA
Found at i:16119675 original size:30 final size:30
Alignment explanation
Indices: 16119639--16119700 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
16119629 CTTATAGAGT
16119639 ATGATGGTATTTCACAAATCTAATTTCCCC
1 ATGATGGTATTTCACAAATCTAATTTCCCC
16119669 ATGATGGTATTTCACAAATCTAATTTCCCC
1 ATGATGGTATTTCACAAATCTAATTTCCCC
16119699 AT
1 AT
16119701 AAAAGCAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.37
Consensus pattern (30 bp):
ATGATGGTATTTCACAAATCTAATTTCCCC
Found at i:16121453 original size:50 final size:50
Alignment explanation
Indices: 16121350--16121571 Score: 237
Period size: 50 Copynumber: 4.3 Consensus size: 50
16121340 GGGAATGAGA
* * * *
16121350 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTATGGGACATGGCGTTGGCA-C--CGAG---ATGAGAGG
* *
16121406 TCCCATGTAAGACCATGTATGGGACATGGCGTTTGCACCGAGATGAGATG
1 TCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGAGAGG
16121456 TCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGAGAGG
** * *** * * **
16121506 TCCCCCGTAAGACCATGTCTGGGACATGGCACGGGCAACGATATGAGAAC
1 TCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGAGAGG
*
16121556 TCCAATGTAAGACCAT
1 TCCCATGTAAGACCAT
16121572 ATCTGGGATA
Statistics
Matches: 145, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
50 108 0.74
53 3 0.02
55 1 0.01
56 33 0.23
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTATGGGACATGGCGTTGGCACCGAGATGAGAGG
Found at i:16121534 original size:100 final size:103
Alignment explanation
Indices: 16121350--16121535 Score: 261
Period size: 100 Copynumber: 1.8 Consensus size: 103
16121340 GGGAATGAGA
* * *
16121350 TCCCATATAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGGTCCCATGTA
1 TCCCATATAAGACCATGTATGGGACATGGCATTGGCATCA-CGAG--TATGAGAGGTCCCACGTA
16121415 AGACCATGTATGGGACATGGCGTTTGCACCGAGATGAGATG
63 AGACCATGTATGGGACATGGCGTTTGCACCGAGATGAGATG
* * *
16121456 TCCCATGTAAGACCATGTATGGGACATGGCGTTGGCA-C-CGAG-ATGAGAGGTCCCCCGTAAGA
1 TCCCATATAAGACCATGTATGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCACGTAAGA
*
16121518 CCATGTCTGGGACATGGC
66 CCATGTATGGGACATGGC
16121536 ACGGGCAACG
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
100 35 0.48
103 3 0.04
105 1 0.01
106 34 0.47
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (103 bp):
TCCCATATAAGACCATGTATGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCACGTAAGA
CCATGTATGGGACATGGCGTTTGCACCGAGATGAGATG
Found at i:16125199 original size:50 final size:50
Alignment explanation
Indices: 16125144--16125273 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
16125134 CATTGAGATT
* * *
16125144 ATGAGAGGTCCCATGTAATACCATGTCTAGG-ACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCATGTAAGACCATGTCT-GGAACATGGCATGGGCACCGAG
** * *
16125194 ATGAGAGGTCCCCCGTAAGACCATGTCTGGAACATGGCATGGGCACTGAT
1 ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATGGGCACCGAG
** * *
16125244 ATGAGAACTCTCATGTAAGACCATATCTGG
1 ATGAGAGGTCCCATGTAAGACCATGTCTGG
16125274 GATATGGTAT
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
49 2 0.03
50 64 0.97
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCATGTAAGACCATGTCTGGAACATGGCATGGGCACCGAG
Found at i:16133755 original size:29 final size:29
Alignment explanation
Indices: 16133722--16133795 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
16133712 GTTGTGAGAT
*
16133722 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAGGTGTGCG-ACTTGAAAGTACA
* *
16133751 TGGCACT-GAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAG-GTGTGCGACTTGAAAGTACA
*
16133780 TGGCACTAAGTGTGCG
1 TGGCACTAGGTGTGCG
16133796 TGGTTGATGA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
28 7 0.18
29 31 0.82
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAGGTGTGCGACTTGAAAGTACA
Found at i:16139185 original size:138 final size:138
Alignment explanation
Indices: 16138929--16139459 Score: 737
Period size: 138 Copynumber: 3.9 Consensus size: 138
16138919 AAAAATGAAT
* * *
16138929 TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACTGAAAATAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTAATTAATAT
* ** * *
16138994 AACTA-TTTATATTAATAAATTCAGTAAAATATATACCATTAATACTTTGTATGAATCAAATTAA
66 AAC-AGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCA
16139058 TATATTAAA
130 TATATTAAA
16139067 TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTAATTAATAT
* * * *
16139132 TACAGTTTATAATAATAAAGTCGGTAAAATATATAAAATTAATATTTTTTATGAATCAAATTCAT
66 AACAGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCAT
*
16139197 ATATTAAC
131 ATATTAAA
* * * *
16139205 TATATTCTTTCCAACAA-AATATTAATTTTCATATCCTTTATATTTTGACAGAAATTAATTAATA
1 TATATTCTTTCCAA-AAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTAATTAATA
** * * *
16139269 TAATTGTTTATATTAATAAATTCGGTAAAGTATATAAAGTTAATATTTTGTATGAATCAAACTCA
65 TAACAGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCA
*
16139334 TATATTAAT
130 TATATTAAA
* *
16139343 TATTATT-TTTCCAAAAGAATATTAATTTTCATCTCTTTTATATTTTAACC-AATTTAATTAATA
1 TA-TATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTAATTAATA
* * * * *
16139406 GAACTGTTTATATTCATAAATTCGGTAAGATATATACAATTAATATTTTGTATG
65 TAACAGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATG
16139460 TGTTCTCTAT
Statistics
Matches: 350, Mismatches: 39, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
137 62 0.18
138 282 0.81
139 6 0.02
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (138 bp):
TATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTAATTAATAT
AACAGTTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAATTCAT
ATATTAAA
Found at i:16147436 original size:51 final size:50
Alignment explanation
Indices: 16147354--16147692 Score: 201
Period size: 51 Copynumber: 6.7 Consensus size: 50
16147344 GATGAACACG
** *
16147354 TGTGTAGTACTGTGTGAAGGATACTACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAAT-ATGGTCACA
* * * * * * *
16147405 TGTGCAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-CACG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAA-ATATG-GTCACA
* ** * * *
16147456 TGTGTAGTATTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTACA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAA-TATGGTCACA
* * * * * * *
16147507 TGTGTGGTACTAAGTGAAGGCTACGATG-GATACCGGA-AAGCTTTGGTCACG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTG-TATC-GATAA-ATATGGTCACA
* * * *
16147558 TATGTAGTACTATGTGAAGGCTACTACGTG-AGCCG-TAAA-ACTTGATCACA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTA-TCGATAAATA--TGGTCACA
* * * *
16147608 TGTGTAGTACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTGATCACG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATC-GATAAATA-TGGTCACA
* * *
16147657 TGTGTAGTACTATGTGAAGGCTTCTACATGTATCGA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGA
16147693 ATGACAATAA
Statistics
Matches: 221, Mismatches: 52, Indels: 31
0.73 0.17 0.10
Matches are distributed among these distances:
49 37 0.17
50 50 0.23
51 130 0.59
52 4 0.02
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGATAAATATGGTCACA
Found at i:16147526 original size:102 final size:102
Alignment explanation
Indices: 16147350--16147691 Score: 360
Period size: 102 Copynumber: 3.4 Consensus size: 102
16147340 TATCGATGAA
* * *
16147350 CACGTGTGTAGTACTGTGTGAAGGATACTACGTGTATCGATAAA-TAATGGTCACATGTGCAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACT-ATGGTCACATGTGTAGTA
*
16147414 CTAAGTGAAGGCTACTATGTG-TACC-GAGAAGTTTTGAG-
65 CTAAGTGAAGGCTACTATG-GATACCGGA-AAGCTTTG-GT
* * * *
16147452 CACGTGTGTAGTATTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTGGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
*
16147517 TAAGTGAAGGCTACGATGGATACCGGAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGGATACCGGAAAGCTTTGGT
* * * * *
16147554 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACT-TGATCACATGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGT-AAACTATGGTCACATGTGTAGTA
* * * * * *
16147617 CTATGTGAAGGCTACTACGTGA-ACTGTAAAAC--TGAT
65 CTAAGTGAAGGCTACTATG-GATACCGGAAAGCTTTGGT
* * *
16147653 CACGTGTGTAGTACTATGTGAAGGCTTCTACATGTATCG
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCG
16147692 AATGACAATA
Statistics
Matches: 203, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
99 34 0.17
100 2 0.01
101 43 0.21
102 121 0.60
103 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGGATACCGGAAAGCTTTGGT
Found at i:16155156 original size:102 final size:102
Alignment explanation
Indices: 16154907--16155243 Score: 316
Period size: 102 Copynumber: 3.3 Consensus size: 102
16154897 TATCGATGAA
* * * * * *
16154907 CACGTTTGTAGTACTGTGTGAAGGCTACTACATGTATC--AATAAATAATGGTCACATGTCTAGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAA-AACT-ATGGTCACATGTCTAGT
*
16154970 ACTAAGTGAAGGCTACTATGTG-TACCGAGAAGTTTTGAG-
64 ACTAAGTGAAGGCTACTATGTGATACCGA-AAGCTTTG-GT
* * * * * * * *
16155009 CACGTGTGTAGTACTGTGTGAAAGCTACTATGTGTATCGGT-AAACTATGGTTACATGTTTGGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACCGTAAAACTATGGTCACATGTCTAGTA
16155073 CTAAGTGAAGGCTACTATG-GATACCAGAAAGCTTTGGT
65 CTAAGTGAAGGCTACTATGTGATACC-GAAAGCTTTGGT
* * * *
16155111 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACT-TGATCACGTGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTATGGTCACATGTCTAGTAC
* * * * * *
16155175 TATGTGAAGGCTATTACGTGA-ACTGTAAAAC--TGAT
66 TAAGTGAAGGCTACTATGTGATACCG-AAAGCTTTGGT
16155210 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
16155244 TATCGAATGA
Statistics
Matches: 195, Mismatches: 31, Indels: 21
0.79 0.13 0.09
Matches are distributed among these distances:
99 36 0.18
100 1 0.01
101 40 0.21
102 112 0.57
103 5 0.03
104 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTATGGTCACATGTCTAGTAC
TAAGTGAAGGCTACTATGTGATACCGAAAGCTTTGGT
Found at i:16155229 original size:49 final size:50
Alignment explanation
Indices: 16154907--16155243 Score: 254
Period size: 51 Copynumber: 6.7 Consensus size: 50
16154897 TATCGATGAA
* * * * ** * *
16154907 CACGTTTGTAGTACTGTGTGAAGGCTACTACATGTATCAATAAATA-ATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACCGTAAA-ACTTGAT
* * * * * ** *
16154958 CACATGTCTAGTACTAAGTGAAGGCTACTATGTGTACCG-AGAAGTTTTGAG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AA-ACTTGAT
* * * * * *
16155009 CACGTGTGTAGTACTGTGTGAAAGCTACTATGTGTATCGGT-AAACTATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACCGTAAAACT-TGAT
* * * * * * * *
16155060 TACATGTTTGGTACTAAGTGAAGGCTACTATG-GATACCAG-AAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGA-ACC-GTAAAAC-TTGAT
*
16155111 CACGTATGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* *
16155161 CACGTGTGTAGTACTATGTGAAGGCTATTACGTGAACTGTAAAAC-TGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
16155210 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
16155244 TATCGAATGA
Statistics
Matches: 224, Mismatches: 51, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
49 39 0.17
50 53 0.24
51 127 0.57
52 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:16165396 original size:138 final size:135
Alignment explanation
Indices: 16165148--16165511 Score: 557
Period size: 138 Copynumber: 2.6 Consensus size: 135
16165138 TAGATAAAAG
* *
16165148 AATTATATTATTTCGAAAAGAATATTAATGTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATT-TTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA-CGAAATTAATTAA
* * *
16165213 TATAACTGTTTATATTAATAAATTTCGTAAAATATATACAATTAATATTTTTTATTAATTAAATT
64 TATAACTGTTTATATTAATAAA-TTCGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
16165278 CATATATT
128 CATATATT
*
16165286 AATTATATTCTTTCCAAAAGAATATTAATTTTTATGTCTTTTATATTTTGATCGAAATTAATTAA
1 AATTATATT-TTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA-CGAAATTAATTAA
* * *
16165351 TATAACTGTTTATAGTACTAAATTCGATAAAATATATACGATTAATATTTTGTATGAATCAAATT
64 TATAACTGTTTATATTAATAAATTCG-TAAAATATATACAATTAATATTTTGTATGAATCAAATT
16165416 CATATATT
128 CATATATT
* * *
16165424 AACTATATTTTTCCAAAAGAATATTAATTTCCATGTCATTTATATTTTGACTGAAATTAATTAAT
1 AATTATATTTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGAC-GAAATTAATTAAT
16165489 ATAACTGTTTATATTAATAAATT
65 ATAACTGTTTATATTAATAAATT
16165512 ACTATTTTGT
Statistics
Matches: 207, Mismatches: 17, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
136 1 0.00
137 76 0.37
138 130 0.63
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (135 bp):
AATTATATTTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACGAAATTAATTAATA
TAACTGTTTATATTAATAAATTCGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
ATATT
Found at i:16165603 original size:119 final size:118
Alignment explanation
Indices: 16165391--16165635 Score: 366
Period size: 119 Copynumber: 2.1 Consensus size: 118
16165381 AATATATACG
*
16165391 ATTAATATTTTGTATGAATCAAATTCATATATTAACTATATTTTTCCAAAAGAATATTAATTTCC
1 ATTAATATTTTGTATGAATCAAATTCAGATATTAACTATATTTTTCCAAAAGAATATTAATTTCC
* *
16165456 ATGTCATTTATATTTTGACTGAAATTAATTAATATAACTGTTTATATTAATAA
66 ATGTCATTTATAGTTTGACTGAAATTAATTAACATAACTGTTTATATTAATAA
* * * **
16165509 ATTACTATTTTGTATGAATCAAATTCAGATATTAATTATATTCTTTCTAAAATCATATTAATTTC
1 ATTAATATTTTGTATGAATCAAATTCAGATATTAACTATATT-TTTCCAAAAGAATATTAATTTC
* *
16165574 CATGTCTTTTATAGTTTGACT-AGAATTAATTAACATCACTGTTTATATTAATAA
65 CATGTCATTTATAGTTTGACTGA-AATTAATTAACATAACTGTTTATATTAATAA
16165628 ATTCAATA
1 ATT-AATA
16165636 AAATATATAC
Statistics
Matches: 113, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
118 40 0.35
119 70 0.62
120 3 0.03
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (118 bp):
ATTAATATTTTGTATGAATCAAATTCAGATATTAACTATATTTTTCCAAAAGAATATTAATTTCC
ATGTCATTTATAGTTTGACTGAAATTAATTAACATAACTGTTTATATTAATAA
Found at i:16184740 original size:26 final size:26
Alignment explanation
Indices: 16184704--16184755 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
16184694 AAAACAAGAA
*
16184704 TGAACCCGTAACAAAGGTTAAGGACC
1 TGAACCAGTAACAAAGGTTAAGGACC
16184730 TGAACCAGTAACAAAGGTTAAGGACC
1 TGAACCAGTAACAAAGGTTAAGGACC
16184756 CGATTCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (26 bp):
TGAACCAGTAACAAAGGTTAAGGACC
Found at i:16196190 original size:43 final size:42
Alignment explanation
Indices: 16196127--16196406 Score: 336
Period size: 43 Copynumber: 6.7 Consensus size: 42
16196117 CAAAGGATCC
16196127 CGGTGGAATCAGCACTTAGCAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAGGATA
*
16196170 CGGTGGAATCAGCACATAGCAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAGGATA
* * *
16196213 CAGTGGAATCAGCACTTAGCAACCACC-TTATAATCAATGATA
1 CGGTGGAATCAGCACTTAGCAACC-CCTTTACAATCAAGGATA
* *
16196255 CGG-GAAATCAGCACATAGCAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCCCTTT-ACAATCAAGGATA
* * *
16196297 CGGTGGAATCAGCACTTAGCAACCACC-TTATAATTAATGATA
1 CGGTGGAATCAGCACTTAGCAACC-CCTTTACAATCAAGGATA
* *** * *
16196339 CGG-GGAATCAGCACATAGCAACCCCTTTTTGATCAATGATT
1 CGGTGGAATCAGCACTTAGCAACCCCTTTACAATCAAGGATA
*
16196380 CGG-GGAATCTGCACTTAGCAACCCCTT
1 CGGTGGAATCAGCACTTAGCAACCCCTT
16196407 ACATTTAAAG
Statistics
Matches: 209, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
40 4 0.02
41 75 0.36
42 40 0.19
43 86 0.41
44 4 0.02
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (42 bp):
CGGTGGAATCAGCACTTAGCAACCCCTTTACAATCAAGGATA
Found at i:16196281 original size:84 final size:84
Alignment explanation
Indices: 16196129--16196366 Score: 397
Period size: 84 Copynumber: 2.8 Consensus size: 84
16196119 AAGGATCCCG
* *
16196129 GTGGAATCAGCACTTAGCAACC-CCTTTCACAATCAAGGATACGGTGGAATCAGCACATAGCAAC
1 GTGGAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATACGG-GGAATCAGCACATAGCAAC
16196193 CCCTTTCACAATCAAGGATACA
63 CCCTTTCACAATCAAGGATACA
*
16196215 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAAATCAGCACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
*
16196280 TTTCACAATCAAGGATACG
66 TTTCACAATCAAGGATACA
*
16196299 GTGGAATCAGCACTTAGCAACCACCTTATAATTAATGATACGGGGAATCAGCACATAGCAACCCC
1 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
16196364 TTT
66 TTT
16196367 TTGATCAATG
Statistics
Matches: 145, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
84 105 0.72
85 14 0.10
86 24 0.17
87 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.21
Consensus pattern (84 bp):
GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
TTTCACAATCAAGGATACA
Found at i:16200471 original size:40 final size:40
Alignment explanation
Indices: 16200387--16200570 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
16200377 TTGAATGCTG
* * * *
16200387 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
16200426 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
16200467 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
16200507 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
16200547 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
16200571 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:16200524 original size:80 final size:81
Alignment explanation
Indices: 16200387--16200567 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
16200377 TTGAATGCTG
* * *
16200387 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
16200451 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
16200467 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
16200528 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
16200547 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
16200568 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:16200591 original size:39 final size:38
Alignment explanation
Indices: 16200468--16200617 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
16200458 GTTATTAATT
* ** * *
16200468 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
16200508 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
16200547 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
16200587 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
16200618 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:16202534 original size:9 final size:9
Alignment explanation
Indices: 16202522--16202547 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
16202512 GTAACTTCAC
16202522 TTTCAACTT
1 TTTCAACTT
16202531 TTTCAACTT
1 TTTCAACTT
16202540 TTTCAACT
1 TTTCAACT
16202548 CTGTATGAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (9 bp):
TTTCAACTT
Found at i:16207166 original size:22 final size:22
Alignment explanation
Indices: 16207140--16207183 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
16207130 AAAGATATTT
*
16207140 CAAACTATTCCATGCAATTCAA
1 CAAACTATTCCAAGCAATTCAA
*
16207162 CAAACTATTTCAAGCAATTCAA
1 CAAACTATTCCAAGCAATTCAA
16207184 GTATCCAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.25, G:0.05, T:0.27
Consensus pattern (22 bp):
CAAACTATTCCAAGCAATTCAA
Found at i:16226790 original size:98 final size:98
Alignment explanation
Indices: 16226616--16226812 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
16226606 GTACAATAAA
* * *
16226616 ACTTTAAAAGAATATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCAAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
16226681 CCTCTAGAATCCCAAACTCGGAATATTTCATTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCATTT
16226714 ACTTTAAAAGAACATCCACTTATCAAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCAAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
16226779 CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCATTT
16226812 A
1 A
16226813 TAATTTTTAA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCAAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCAGAATATTTCATTT
Found at i:16229070 original size:44 final size:45
Alignment explanation
Indices: 16229013--16229343 Score: 136
Period size: 45 Copynumber: 7.5 Consensus size: 45
16229003 TTATAATTCG
**
16229013 CTCCACTATAACTTCAGGGAGATAGGA-TTG-TCGGCTTTAATCTA
1 CTCCACTGCAACTTCAGGGAGATAGGATTTGCTCGGC-TTAATCTA
* * * ** * *
16229057 TTCCCCTGCAACTTCAGGGATATAGGATTTGCTTTGCTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAGGATTTGCTCGGCTTAATCTA
* * * *
16229102 CTCCACTGCAACTTCAGGGAGATAAGA----CT-AGATATGATCTA
1 CTCCACTGCAACTTCAGGGAGATAGGATTTGCTCGGCT-TAATCTA
* * * * * * * * *
16229143 CT-CTCTACATCTTCAGAGAGATAAGATCTG--AGGTTTTAATCCA
1 CTCCACTGCAACTTCAGGGAGATAGGATTTGCTCGG-CTTAATCTA
* * *
16229186 CTCCACTGTAACTTCAGGGAGATAGGA-TT-ATCGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAGGATTTGCTCGGC-TTAATCTA
* * ** * *
16229230 CTCCA-TCGCAACTTTAGGGAGATAAGATTTGC-CATCTTCAGTCTG
1 CTCCACT-GCAACTTCAGGGAGATAGGATTTGCTCGGCTT-AATCTA
* * * ** *
16229275 C-CTCACTGCAACTTCA-AGAGGATAAGACTTGCTTTGCTTAATCTG
1 CTC-CACTGCAACTTCAGGGA-GATAGGATTTGCTCGGCTTAATCTA
*
16229320 TTCCACTGCAACTTCAGGGAGATA
1 CTCCACTGCAACTTCAGGGAGATA
16229344 AAACTAGATT
Statistics
Matches: 211, Mismatches: 53, Indels: 45
0.68 0.17 0.15
Matches are distributed among these distances:
40 22 0.10
41 8 0.04
43 10 0.05
44 76 0.36
45 85 0.40
46 10 0.05
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAGGATTTGCTCGGCTTAATCTA
Found at i:16229210 original size:173 final size:174
Alignment explanation
Indices: 16228889--16229303 Score: 502
Period size: 173 Copynumber: 2.4 Consensus size: 174
16228879 CTGTCCCACA
* * * **
16228889 GCAATTTCAAGGG-GATAAGACTTGCTTTCTTGAGTCTATTCCACTGCAACTTCAGGGAGATTAA
1 GCAACTTC-AGGGAGATAAGATTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGA-TAA
** * * * *
16228953 GACCCGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTATGGTTATAATTCGCTCCA
64 GACTAGATATGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATGGTTATAATCCACTCCA
* * *
16229018 CTATAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTATTCC-CC
129 CTATAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCATC
* *
16229063 TGCAACTTCAGGGATATAGGATTTGCTTTGCTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAA
1 -GCAACTTCAGGGAGATAAGATTTGCTTT-CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAA
* *
16229127 GACTAGATATGATCTACTCT-CTACATCTTCAGAGAGATAAGATCTGA-GGTTTTAATCCACTCC
64 GACTAGATATGATCTACTCTACTACAACTTCAGAGAGATAAGATCT-ATGGTTATAATCCACTCC
* *
16229190 ACTGTAACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCATC
128 ACTATAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCATC
* ** *
16229237 GCAACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTGC-CTCACTGCAACTTCA-AGAGGATAA
1 GCAACTTCAGGGAGATAAGATTTGCTTTCTTCAGTCTGCTC-CACTGCAACTTCAGGGA-GATAA
16229300 GACT
64 GACT
16229304 TGCTTTGCTT
Statistics
Matches: 208, Mismatches: 25, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
172 6 0.03
173 128 0.62
174 26 0.12
175 45 0.22
176 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (174 bp):
GCAACTTCAGGGAGATAAGATTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGA
CTAGATATGATCTACTCTACTACAACTTCAGAGAGATAAGATCTATGGTTATAATCCACTCCACT
ATAACTTCAGGGAGATAGGATTATCGGCTTTAATCTACTCCATC
Found at i:16229344 original size:45 final size:45
Alignment explanation
Indices: 16228884--16229344 Score: 164
Period size: 44 Copynumber: 10.5 Consensus size: 45
16228874 TTAGTCTGTC
* * * **
16228884 CCACAGCAATTTCAAGGG-GATAAGACTTGCTTT-CTTGAGTCTATT
1 CCACTGCAACTTC-AGGGAGATAAGACTTGCTTTGCTT-AATCTGCT
* ** * *
16228929 CCACTGCAACTTCAGGGAGATTAAGAC--CCGATG--TGATCTACT
1 CCACTGCAACTTCAGGGAGA-TAAGACTTGCTTTGCTTAATCTGCT
* * * *
16228971 CTACTGCAACTTCAGAGAGATAAGATCTATG-GTT--ATAAT-TCGCT
1 CCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTTGCTTAATCT-GCT
** * ** **
16229015 CCACTATAACTTCAGGGAGATAGGA-TTG-TCGGCTTTAATCTATT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTGC-TTAATCTGCT
* * * * *
16229059 CCCCTGCAACTTCAGGGATATAGGATTTGCTTTGCTTAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTGCTTAATCTGCT
* * * *
16229104 CCACTGCAACTTCAGGGAGATAAGACTAGATATG----ATCTACT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTGCTTAATCTGCT
* * * * ** **
16229145 -CTCTACATCTTCAGAGAGATAAGA-TCTGAGGTT--TTAATCCACT
1 CCACTGCAACTTCAGGGAGATAAGACT-TG-CTTTGCTTAATCTGCT
* * * **
16229188 CCACTGTAACTTCAGGGAGATAGGA-TT-ATCGGCTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTGC-TTAATCTGCT
* * ** *
16229232 CCA-TCGCAACTTTAGGGAGATAAGATTTGCCAT-CTTCAGTCTGC-
1 CCACT-GCAACTTCAGGGAGATAAGACTTGCTTTGCTT-AATCTGCT
* *
16229276 CTCACTGCAACTTCA-AGAGGATAAGACTTGCTTTGCTTAATCTGTT
1 C-CACTGCAACTTCAGGGA-GATAAGACTTGCTTTGCTTAATCTGCT
16229322 CCACTGCAACTTCAGGGAGATAA
1 CCACTGCAACTTCAGGGAGATAA
16229345 AACTAGATTG
Statistics
Matches: 302, Mismatches: 80, Indels: 68
0.67 0.18 0.15
Matches are distributed among these distances:
39 1 0.00
40 21 0.07
41 13 0.04
42 25 0.08
43 10 0.03
44 111 0.37
45 105 0.35
46 16 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (45 bp):
CCACTGCAACTTCAGGGAGATAAGACTTGCTTTGCTTAATCTGCT
Found at i:16241038 original size:98 final size:98
Alignment explanation
Indices: 16240859--16241055 Score: 322
Period size: 98 Copynumber: 2.0 Consensus size: 98
16240849 GTACAATAAA
* *
16240859 ACTTTAAAAGAATATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* * *
16240924 CCTCTAGAATCTCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
* *
16240957 ACTTTAAAAGAACATCCACTTATCCAAGATTTATGAAATCACATCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
16241022 CCTTTAAAATCCCAAACTCAGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
16241055 A
1 A
16241056 TAATTTTTAA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCAGAATATTTCCTTT
Found at i:16247872 original size:86 final size:86
Alignment explanation
Indices: 16247761--16247935 Score: 341
Period size: 86 Copynumber: 2.0 Consensus size: 86
16247751 ATAATAACAA
16247761 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
1 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
16247826 CATACAAATAGAAAGTGAAGC
66 CATACAAATAGAAAGTGAAGC
*
16247847 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAATAA
1 ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
16247912 CATACAAATAGAAAGTGAAGC
66 CATACAAATAGAAAGTGAAGC
16247933 ATT
1 ATT
16247936 CATATTAGAC
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (86 bp):
ATTGAAGATTTTTATAAAATTATAATCATAATACTAATTAGAAAATTAGTTAAAATTAATAACAA
CATACAAATAGAAAGTGAAGC
Found at i:16248097 original size:16 final size:18
Alignment explanation
Indices: 16248076--16248114 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
16248066 TAGCTCAAAC
*
16248076 TATAAAAACT-TTATT-A
1 TATAAAAAATATTATTGA
16248092 TATAAAAAATATTATTGA
1 TATAAAAAATATTATTGA
16248110 TATAA
1 TATAA
16248115 TTTTATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 9 0.45
17 5 0.25
18 6 0.30
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (18 bp):
TATAAAAAATATTATTGA
Found at i:16248396 original size:24 final size:24
Alignment explanation
Indices: 16248356--16248403 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
16248346 CTTACCAATT
* *
16248356 CTAATAACCTCCCTTTGTTGAATG
1 CTAATAACCTCCATTTGTCGAATG
*
16248380 CTAATAACTTCCATTTGTCGAATG
1 CTAATAACCTCCATTTGTCGAATG
16248404 TTATTTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (24 bp):
CTAATAACCTCCATTTGTCGAATG
Found at i:16253918 original size:25 final size:24
Alignment explanation
Indices: 16253873--16253921 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
16253863 TATATAGTTT
16253873 TATATTATTTATAAAGGTTATAATA
1 TATATTATTTATAAA-GTTATAATA
16253898 TATATTATATTATAATA-TTATAAT
1 TATATTAT-TTATAA-AGTTATAAT
16253922 TAAACAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 15 0.68
26 6 0.27
27 1 0.05
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TATATTATTTATAAAGTTATAATA
Found at i:16254394 original size:41 final size:40
Alignment explanation
Indices: 16254316--16254410 Score: 127
Period size: 41 Copynumber: 2.4 Consensus size: 40
16254306 CTATATGATT
* * * *
16254316 AGCACTAAATGTGCGAATTAAATGATGAGGTTGAATAACG
1 AGCACTAAGTGTGCAAATTAAATAATGAGGTTAAATAACG
*
16254356 AGCACTAAGTGTGCAAAATTAAATAATGATGTTAAATAACG
1 AGCACTAAGTGTGC-AAATTAAATAATGAGGTTAAATAACG
*
16254397 GGCACTAAGTGTGC
1 AGCACTAAGTGTGC
16254411 GAAACTGAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 13 0.27
41 35 0.73
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (40 bp):
AGCACTAAGTGTGCAAATTAAATAATGAGGTTAAATAACG
Found at i:16257480 original size:44 final size:43
Alignment explanation
Indices: 16257380--16257481 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 43
16257370 GTTAGTTCAT
* * *
16257380 TTAAATATGATTCATATGAATTTGACATGGATAACCATTATAC
1 TTAAACATGATTCATAGGAATTTAACATGGATAACCATTATAC
* * * **
16257423 TTGAGCATAATTCATAGGTAATTTAACATGGATAGTCATTATAC
1 TTAAACATGATTCATAGG-AATTTAACATGGATAACCATTATAC
16257467 TTAAACATGATTCAT
1 TTAAACATGATTCAT
16257482 TTGGATTTGT
Statistics
Matches: 47, Mismatches: 11, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
43 13 0.28
44 34 0.72
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (43 bp):
TTAAACATGATTCATAGGAATTTAACATGGATAACCATTATAC
Found at i:16257759 original size:26 final size:25
Alignment explanation
Indices: 16257696--16257765 Score: 88
Period size: 26 Copynumber: 2.8 Consensus size: 25
16257686 CCTTTACATA
*
16257696 TATGCTCACACGAGTTATGAATAAG
1 TATGCTCACACGAGCTATGAATAAG
**
16257721 TATGCTCACACGAGCTATGAAATGGG
1 TATGCTCACACGAGCTATG-AATAAG
16257747 CT-TGCTCACACGAGCTATG
1 -TATGCTCACACGAGCTATG
16257766 GGTCAGAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
25 18 0.45
26 21 0.52
27 1 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (25 bp):
TATGCTCACACGAGCTATGAATAAG
Found at i:16259395 original size:18 final size:18
Alignment explanation
Indices: 16259369--16259409 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
16259359 CCCTTATCAG
16259369 TACCATTAGAGAATTCTT
1 TACCATTAGAGAATTCTT
* * *
16259387 TACCGTTAGATATTTCTT
1 TACCATTAGAGAATTCTT
16259405 TACCA
1 TACCA
16259410 ATGGCGGGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (18 bp):
TACCATTAGAGAATTCTT
Found at i:16264400 original size:26 final size:26
Alignment explanation
Indices: 16264364--16264418 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
16264354 GCGTACATGT
16264364 TTTGGGGTTTGATGTCATTTCATCCA
1 TTTGGGGTTTGATGTCATTTCATCCA
16264390 TTTGGGGTTTGATGTCATTTCATCCA
1 TTTGGGGTTTGATGTCATTTCATCCA
16264416 TTT
1 TTT
16264419 TGGTTGATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.15, C:0.15, G:0.22, T:0.49
Consensus pattern (26 bp):
TTTGGGGTTTGATGTCATTTCATCCA
Found at i:16267663 original size:22 final size:23
Alignment explanation
Indices: 16267635--16267677 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
16267625 GCAATCGCAT
16267635 ATATGA-TATGTAATCTTAGAAG
1 ATATGATTATGTAATCTTAGAAG
*
16267657 ATATGATTTTGTAATCTTAGA
1 ATATGATTATGTAATCTTAGA
16267678 GATTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (23 bp):
ATATGATTATGTAATCTTAGAAG
Found at i:16267687 original size:22 final size:23
Alignment explanation
Indices: 16267643--16267687 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
16267633 ATATATGATA
*
16267643 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
16267666 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
16267688 GTAGATACCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:16272801 original size:22 final size:23
Alignment explanation
Indices: 16272774--16272816 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
16272764 GCAATTGCAT
16272774 ATATGA-TATGTAATCTTAGAAG
1 ATATGATTATGTAATCTTAGAAG
*
16272796 ATATGATTTTGTAATCTTAGA
1 ATATGATTATGTAATCTTAGA
16272817 GATTTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.37, C:0.05, G:0.16, T:0.42
Consensus pattern (23 bp):
ATATGATTATGTAATCTTAGAAG
Found at i:16278139 original size:15 final size:15
Alignment explanation
Indices: 16278119--16278147 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
16278109 CTTTTGTGGT
16278119 TTCTGTTTTGTATGG
1 TTCTGTTTTGTATGG
16278134 TTCTGTTTTGTATG
1 TTCTGTTTTGTATG
16278148 TTTGTATTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.07, G:0.24, T:0.62
Consensus pattern (15 bp):
TTCTGTTTTGTATGG
Found at i:16279283 original size:29 final size:29
Alignment explanation
Indices: 16279239--16279307 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
16279229 GTTGCAATGG
16279239 AAATTGTCTGCAGTTTTCAATGAAACTGA
1 AAATTGTCTGCAGTTTTCAATGAAACTGA
* *
16279268 AAATTGTCTGCTGTTTTCAATGAAACTGG
1 AAATTGTCTGCAGTTTTCAATGAAACTGA
16279297 AAATTGT-TGCA
1 AAATTGTCTGCA
16279308 TTTGTTTAGG
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (29 bp):
AAATTGTCTGCAGTTTTCAATGAAACTGA
Found at i:16279669 original size:21 final size:21
Alignment explanation
Indices: 16279618--16279661 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
16279608 ACTTTTGGAA
16279618 TTTAC-AATAGGTTATATGTT
1 TTTACTAATAGGTTATATGTT
16279638 TTTACTAATAGGTTATATGTT
1 TTTACTAATAGGTTATATGTT
16279659 TTT
1 TTT
16279662 TTTTATAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.27, C:0.05, G:0.14, T:0.55
Consensus pattern (21 bp):
TTTACTAATAGGTTATATGTT
Found at i:16279809 original size:13 final size:13
Alignment explanation
Indices: 16279791--16279815 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16279781 TTTATTAGTG
16279791 AAAGAGTACATAT
1 AAAGAGTACATAT
16279804 AAAGAGTACATA
1 AAAGAGTACATA
16279816 CAAATTTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (13 bp):
AAAGAGTACATAT
Found at i:16279817 original size:51 final size:51
Alignment explanation
Indices: 16279720--16279822 Score: 145
Period size: 51 Copynumber: 2.0 Consensus size: 51
16279710 AACTTTTTAC
**
16279720 TAATATATAATTTATTAGTGAAAGCATACATAAAAAAAATTGATACAAATT
1 TAATATATAATTTATTAGTGAAAGCATACATAAAAAAAATACATACAAATT
* * *
16279771 TAATATATAATTTATTAGTGAAAG-AGTACATATAAAGAGTACATACAAATT
1 TAATATATAATTTATTAGTGAAAGCA-TACATAAAAAAAATACATACAAATT
16279822 T
1 T
16279823 GATAATTATG
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 1 0.02
51 45 0.98
ACGTcount: A:0.50, C:0.06, G:0.10, T:0.34
Consensus pattern (51 bp):
TAATATATAATTTATTAGTGAAAGCATACATAAAAAAAATACATACAAATT
Found at i:16280508 original size:15 final size:15
Alignment explanation
Indices: 16280488--16280523 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
16280478 CAAATAACAA
16280488 CAATTAATTTTAGGT
1 CAATTAATTTTAGGT
16280503 CAATTAATTTTAGGT
1 CAATTAATTTTAGGT
16280518 CAATTA
1 CAATTA
16280524 TACATATACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.44
Consensus pattern (15 bp):
CAATTAATTTTAGGT
Found at i:16283710 original size:91 final size:91
Alignment explanation
Indices: 16283563--16283770 Score: 344
Period size: 91 Copynumber: 2.3 Consensus size: 91
16283553 TTGATTTTAG
* *
16283563 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
16283628 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
16283655 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
16283720 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
*
16283746 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
16283771 GTTATAATTA
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 93 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:16283739 original size:26 final size:28
Alignment explanation
Indices: 16283685--16283745 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
16283675 TATTATCAAG
* *
16283685 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
16283713 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
16283739 AATTATA
1 AATTATA
16283746 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:16283745 original size:44 final size:43
Alignment explanation
Indices: 16283603--16283745 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
16283593 GAATTTTATG
* *
16283603 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
16283647 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
16283694 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
16283738 AAATTATA
1 AAATTATA
16283746 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:16283935 original size:18 final size:17
Alignment explanation
Indices: 16283907--16283941 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
16283897 ATTATTAAGA
*
16283907 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
16283924 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
16283942 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:16284033 original size:119 final size:120
Alignment explanation
Indices: 16283786--16284082 Score: 524
Period size: 119 Copynumber: 2.5 Consensus size: 120
16283776 AATTATTTTA
* * *
16283786 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATGATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
16283851 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
16283906 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
*
16283971 ATAGT-TCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
*
16284025 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
16284083 ATGATTAAAT
Statistics
Matches: 170, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
119 99 0.58
120 71 0.42
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ACAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:16284060 original size:16 final size:16
Alignment explanation
Indices: 16284039--16284080 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
16284029 TTATTAAATT
*
16284039 ATATATTTTAATTATA
1 ATATATTTTAATAATA
16284055 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
16284070 AT-TATGTTTAA
1 ATATAT-TTTAA
16284081 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:16284065 original size:15 final size:15
Alignment explanation
Indices: 16284030--16284071 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
16284020 TTAAGAATTT
*
16284030 TATTAAATTAT-ATA
1 TATTTAATTATAATA
16284044 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
16284058 TATTTAATAATAAT
1 TATTTAATTATAAT
16284072 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:16284305 original size:45 final size:44
Alignment explanation
Indices: 16284225--16284314 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
16284215 ACCTCTATTC
16284225 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
* *
16284269 CATTCAACCAAACA-ATTGATTTGCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
16284314 C
1 C
16284315 GCCTCTATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.38
45 25 0.60
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
Found at i:16284315 original size:16 final size:16
Alignment explanation
Indices: 16284294--16284326 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
16284284 TTGATTTGCT
16284294 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
16284310 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
16284326 A
1 A
16284327 ATACAGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.36, G:0.06, T:0.36
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:16287214 original size:21 final size:21
Alignment explanation
Indices: 16287188--16287234 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
16287178 GTGGCCTAAA
*
16287188 CGTAAAGGAACGTCTTTGTGG
1 CGTAAAGGAACGCCTTTGTGG
***
16287209 CGTAAAGGGGTGCCTTTGTGG
1 CGTAAAGGAACGCCTTTGTGG
16287230 CGTAA
1 CGTAA
16287235 TCGTAAAGGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.21, C:0.15, G:0.36, T:0.28
Consensus pattern (21 bp):
CGTAAAGGAACGCCTTTGTGG
Found at i:16287239 original size:27 final size:27
Alignment explanation
Indices: 16287209--16287287 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
16287199 GTCTTTGTGG
** *
16287209 CGTAAAGGGGTGCCTTTGTGGCGTAAT
1 CGTAAAGGAATGCCTTTGTGGCATAAT
*
16287236 CGTAAAGGAATGCCTCTGTGGCATAAT
1 CGTAAAGGAATGCCTTTGTGGCATAAT
*
16287263 TGT-AAGGAAATGCCTTTGTGGCATA
1 CGTAAAGG-AATGCCTTTGTGGCATA
16287288 TTATGAATGA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.09
27 41 0.91
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.29
Consensus pattern (27 bp):
CGTAAAGGAATGCCTTTGTGGCATAAT
Found at i:16289018 original size:30 final size:30
Alignment explanation
Indices: 16288983--16289039 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
16288973 AAAAAATTAA
*
16288983 AAAAATAAATAAAAATATT-TTTTTAAAAAT
1 AAAAAT-AATAAAAAAATTATTTTTAAAAAT
*
16289013 AAAAATTATAAAAAAATTATTTTTAAA
1 AAAAATAATAAAAAAATTATTTTTAAA
16289040 TTTTTTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (30 bp):
AAAAATAATAAAAAAATTATTTTTAAAAAT
Found at i:16289034 original size:32 final size:33
Alignment explanation
Indices: 16288974--16289036 Score: 85
Period size: 32 Copynumber: 1.9 Consensus size: 33
16288964 TTAGAATTTA
16288974 AAAAATTAAAAAAATAAATAAAAATATTTTTTT
1 AAAAATTAAAAAAATAAATAAAAATATTTTTTT
* *
16289007 AAAAA-TAAAAATTATAAA-AAAATTATTTTT
1 AAAAATTAAAAA-AATAAATAAAAATATTTTT
16289037 AAATTTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (33 bp):
AAAAATTAAAAAAATAAATAAAAATATTTTTTT
Found at i:16292736 original size:18 final size:17
Alignment explanation
Indices: 16292709--16292768 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
16292699 TTCAGGAAAT
*
16292709 TTTATTATTTTTTATTA
1 TTTATAATTTTTTATTA
*
16292726 TTTCATAATTTTTTAATA
1 TTT-ATAATTTTTTATTA
*
16292744 TGTT-TAAATTTTTATT-
1 T-TTATAATTTTTTATTA
16292760 TTTATAATT
1 TTTATAATT
16292769 GGTATGAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
15 2 0.06
16 5 0.14
17 13 0.37
18 13 0.37
19 2 0.06
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTATAATTTTTTATTA
Found at i:16297834 original size:39 final size:40
Alignment explanation
Indices: 16297790--16297886 Score: 153
Period size: 39 Copynumber: 2.5 Consensus size: 40
16297780 CACTTTTAAA
*
16297790 CATATATCACAATACTCATATAATCACAT-AACATTCAAG
1 CATATATCACAATACTCAGATAATCACATAAACATTCAAG
*
16297829 CATATATCACTAGT-CTCAGATAATCACATAAACATTCAAG
1 CATATATCAC-AATACTCAGATAATCACATAAACATTCAAG
16297869 CATATATCACAATACTCA
1 CATATATCACAATACTCA
16297887 AAAACATATT
Statistics
Matches: 52, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
39 26 0.50
40 26 0.50
ACGTcount: A:0.44, C:0.24, G:0.04, T:0.28
Consensus pattern (40 bp):
CATATATCACAATACTCAGATAATCACATAAACATTCAAG
Found at i:16302611 original size:15 final size:17
Alignment explanation
Indices: 16302581--16302613 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
16302571 TTAAGCATAT
16302581 ATCACATTACAAATTTA
1 ATCACATTACAAATTTA
16302598 ATCACA-TA-AAATTTA
1 ATCACATTACAAATTTA
16302613 A
1 A
16302614 GCATATATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (17 bp):
ATCACATTACAAATTTA
Found at i:16302624 original size:39 final size:39
Alignment explanation
Indices: 16302570--16302788 Score: 296
Period size: 39 Copynumber: 5.6 Consensus size: 39
16302560 TATATTCACT
* ** * *
16302570 TTTAAGCATATATCACATTACAAATTTAATCACATAAAA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
16302609 TTTAAGCATATATCACAATATTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
16302648 TTCAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
16302687 TTCAAGCATATATCATAACACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
16302726 TTCT-AGCATACATCACAATACTTAAATAATCACATAACA
1 TT-TAAGCATATATCACAATACTCATATAATCACATAACA
*
16302765 TTTAAGCATATATCATAATACTCA
1 TTTAAGCATATATCACAATACTCA
16302789 AAAACATGTT
Statistics
Matches: 159, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
38 1 0.01
39 158 0.99
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:16304953 original size:30 final size:30
Alignment explanation
Indices: 16304882--16305036 Score: 138
Period size: 30 Copynumber: 5.2 Consensus size: 30
16304872 CATCGAACTG
* *
16304882 TGAAAAGGGATAGCTTCGGCTATC-AATCA
1 TGAAAAGGGATAGCTTCAGCTATCAAATTA
* *
16304911 CGAAAAGGGATGGCTTCAGCTATCAAATTA
1 TGAAAAGGGATAGCTTCAGCTATCAAATTA
* * * * *
16304941 TGAAAAGTGAT-G-GTGACGACTATCGAACTA
1 TGAAAAGGGATAGCTTCA-G-CTATCAAATTA
* * *
16304971 TGAAATGGGATAGCTACGGCTATCAAATTA
1 TGAAAAGGGATAGCTTCAGCTATCAAATTA
16305001 TGAAAAGGGATAGCTTC-GACTATCAAATTA
1 TGAAAAGGGATAGCTTCAG-CTATCAAATTA
*
16305031 CGAAAA
1 TGAAAA
16305037 AAGGTCAACC
Statistics
Matches: 99, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
28 2 0.02
29 24 0.24
30 71 0.72
31 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (30 bp):
TGAAAAGGGATAGCTTCAGCTATCAAATTA
Found at i:16304992 original size:89 final size:90
Alignment explanation
Indices: 16304851--16305036 Score: 250
Period size: 89 Copynumber: 2.1 Consensus size: 90
16304841 ACCATTGATA
* * *
16304851 ATGAAAAGGGATCGTGATGACCATCGAACTGTGAAAAGGGATAGCTTCGGCTATC-AATCACGAA
1 ATGAAAAGGGATCGTGACGACCATCGAACTATGAAAAGGGATAGCTACGGCTATCAAATCACGAA
*
16304915 AAGGGATGGCTTC-AGCTATCAAATT
66 AAGGGATAGCTTCGA-CTATCAAATT
* * * * * *
16304940 ATGAAAAGTGATGGTGACGACTATCGAACTATGAAATGGGATAGCTACGGCTATCAAATTATGAA
1 ATGAAAAGGGATCGTGACGACCATCGAACTATGAAAAGGGATAGCTACGGCTATCAAATCACGAA
16305005 AAGGGATAGCTTCGACTATCAAATT
66 AAGGGATAGCTTCGACTATCAAATT
*
16305030 ACGAAAA
1 ATGAAAA
16305037 AAGGTCAACC
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
89 48 0.57
90 35 0.42
91 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (90 bp):
ATGAAAAGGGATCGTGACGACCATCGAACTATGAAAAGGGATAGCTACGGCTATCAAATCACGAA
AAGGGATAGCTTCGACTATCAAATT
Found at i:16305021 original size:60 final size:59
Alignment explanation
Indices: 16304882--16305036 Score: 170
Period size: 60 Copynumber: 2.6 Consensus size: 59
16304872 CATCGAACTG
* * *
16304882 TGAAAAGGGATAGCTTCGGCTATCAATCACGAAAAGGGATGGCTTCAGCTATCAAATTA
1 TGAAAAGGGATAGCTTCGACTATCAATCACGAAAAGGGATAGCTACAGCTATCAAATTA
* * * * * *
16304941 TGAAAAGTGAT-GGTGACGACTATCGAA-CTATGAAATGGGATAGCTACGGCTATCAAATTA
1 TGAAAAGGGATAGCT-TCGACTATC-AATC-ACGAAAAGGGATAGCTACAGCTATCAAATTA
*
16305001 TGAAAAGGGATAGCTTCGACTATCAAATTACGAAAA
1 TGAAAAGGGATAGCTTCGACTATC-AATCACGAAAA
16305037 AAGGTCAACC
Statistics
Matches: 75, Mismatches: 16, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
58 2 0.03
59 18 0.24
60 53 0.71
61 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (59 bp):
TGAAAAGGGATAGCTTCGACTATCAATCACGAAAAGGGATAGCTACAGCTATCAAATTA
Found at i:16313998 original size:21 final size:21
Alignment explanation
Indices: 16313974--16314019 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
16313964 TGACCACGGC
*
16313974 CTCTCGGTGGCTACTGAGCTA
1 CTCTCGGTGGCTACTAAGCTA
*
16313995 CTCTCGGTGGCTGCTAAGCTA
1 CTCTCGGTGGCTACTAAGCTA
16314016 CTCT
1 CTCT
16314020 TAGTAGTGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.13, C:0.30, G:0.26, T:0.30
Consensus pattern (21 bp):
CTCTCGGTGGCTACTAAGCTA
Found at i:16317609 original size:8 final size:8
Alignment explanation
Indices: 16317596--16317623 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
16317586 TGGGAATCTG
16317596 AAAATAAC
1 AAAATAAC
16317604 AAAATAAC
1 AAAATAAC
16317612 AAAATAAC
1 AAAATAAC
16317620 AAAA
1 AAAA
16317624 AAATTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.79, C:0.11, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAATAAC
Found at i:16322501 original size:7 final size:7
Alignment explanation
Indices: 16322489--16322513 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
16322479 AGTTGAAAAT
16322489 AAAAGAG
1 AAAAGAG
16322496 AAAAGAG
1 AAAAGAG
16322503 AAAAGAG
1 AAAAGAG
16322510 AAAA
1 AAAA
16322514 ATTAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (7 bp):
AAAAGAG
Found at i:16324040 original size:23 final size:22
Alignment explanation
Indices: 16324010--16324053 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
16324000 CATGTTTTCA
* *
16324010 TGTTTTTATTTTTTTAACCTTT
1 TGTTTTTACTATTTTAACCTTT
16324032 TGTTATTTACTATTTTAACCTT
1 TGTT-TTTACTATTTTAACCTT
16324054 AACCAACATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.18, C:0.11, G:0.05, T:0.66
Consensus pattern (22 bp):
TGTTTTTACTATTTTAACCTTT
Found at i:16327456 original size:21 final size:21
Alignment explanation
Indices: 16327418--16327457 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
16327408 TAATTATCTT
*
16327418 ATAATTGCACATGGATTTGTA
1 ATAATTGCACATGAATTTGTA
* *
16327439 ATAATTGCATATTAATTTG
1 ATAATTGCACATGAATTTG
16327458 CAAATTTTTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (21 bp):
ATAATTGCACATGAATTTGTA
Found at i:16328923 original size:32 final size:32
Alignment explanation
Indices: 16328886--16328967 Score: 101
Period size: 32 Copynumber: 2.6 Consensus size: 32
16328876 TTGAAATTAG
* *
16328886 TTTGTTGGATTTTGAAATTATTATGTCTTAAA
1 TTTGTTGGATATTGAAATTATCATGTCTTAAA
* * * *
16328918 TTTGTTAGATATTGAATTTATCATGTTTTAAG
1 TTTGTTGGATATTGAAATTATCATGTCTTAAA
*
16328950 CTTGTTGGATATTGAAAT
1 TTTGTTGGATATTGAAAT
16328968 GATTGACAAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.28, C:0.04, G:0.17, T:0.51
Consensus pattern (32 bp):
TTTGTTGGATATTGAAATTATCATGTCTTAAA
Found at i:16330406 original size:19 final size:20
Alignment explanation
Indices: 16330378--16330422 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
16330368 CATCCAAACA
16330378 CCAG-AAAGTAAATCA-TTT
1 CCAGAAAAGTAAATCACTTT
16330396 CCAGAAAAGTAAATCACTTT
1 CCAGAAAAGTAAATCACTTT
16330416 CCAGAAA
1 CCAGAAA
16330423 TTATTTTCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 4 0.16
19 11 0.44
20 10 0.40
ACGTcount: A:0.47, C:0.20, G:0.11, T:0.22
Consensus pattern (20 bp):
CCAGAAAAGTAAATCACTTT
Found at i:16330430 original size:14 final size:14
Alignment explanation
Indices: 16330413--16330443 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
16330403 AGTAAATCAC
*
16330413 TTTCCAGAAATTAT
1 TTTCCAGAAAATAT
16330427 TTTCCAGAAAATAT
1 TTTCCAGAAAATAT
16330441 TTT
1 TTT
16330444 ACTGGAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (14 bp):
TTTCCAGAAAATAT
Found at i:16330667 original size:11 final size:11
Alignment explanation
Indices: 16330651--16330689 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
16330641 AACATTTTCA
16330651 TAATAAAATAT
1 TAATAAAATAT
16330662 TAATAAAA-AT
1 TAATAAAATAT
16330672 CTAACTAAAATAT
1 -TAA-TAAAATAT
16330685 TAATA
1 TAATA
16330690 CTATAACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.08
11 13 0.52
12 8 0.32
13 2 0.08
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:16334137 original size:46 final size:46
Alignment explanation
Indices: 16334032--16334203 Score: 186
Period size: 46 Copynumber: 3.8 Consensus size: 46
16334022 CTTTTATTTT
* * * * *
16334032 TTGA-TCTGAAACATATGCAGGAACTCAGAACCTAATTACGTATTC
1 TTGAGTCTGCAACATATGCAGGAGCTCAAAACCTAATCATGTATTC
*** * * *
16334077 TTGAGTCCATAACATAAGAAAGAGCTCAAAACCTAATCATGTATTC
1 TTGAGTCTGCAACATATGCAGGAGCTCAAAACCTAATCATGTATTC
* * *
16334123 TCGAGTCTGCAACATATGCAGGAGCT-AGAAATCTATTCATGTATTC
1 TTGAGTCTGCAACATATGCAGGAGCTCA-AAACCTAATCATGTATTC
*
16334169 TTGAGTCTGCAACATATGCAGGAACTCAAAACCTA
1 TTGAGTCTGCAACATATGCAGGAGCTCAAAACCTA
16334204 GGCAAACTCA
Statistics
Matches: 102, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
45 5 0.05
46 96 0.94
47 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (46 bp):
TTGAGTCTGCAACATATGCAGGAGCTCAAAACCTAATCATGTATTC
Found at i:16350961 original size:45 final size:45
Alignment explanation
Indices: 16350888--16351022 Score: 193
Period size: 45 Copynumber: 3.0 Consensus size: 45
16350878 CCGTTACACG
* * *
16350888 GTGG-ATCAGCACATAGC-ACCACCCTTATAATCAATTATATTCA
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
* * *
16350931 GTGGAATTAGCACATAGCAACCACCTTTATAATCAATGGTACCCA
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
*
16350976 GTGGAATCAACACATAGCAACCACCTTTATAATCAATGATACTCA
1 GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
16351021 GT
1 GT
16351023 ACACGTAGTG
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 4 0.05
44 12 0.15
45 64 0.80
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.26
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATACTCA
Found at i:16352633 original size:14 final size:15
Alignment explanation
Indices: 16352608--16352637 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
16352598 ATGAGTAAAT
16352608 AAAATAATAATGAAA
1 AAAATAATAATGAAA
16352623 AAAATAA-AATGAAA
1 AAAATAATAATGAAA
16352637 A
1 A
16352638 CAAGTAGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.17
Consensus pattern (15 bp):
AAAATAATAATGAAA
Found at i:16353928 original size:40 final size:40
Alignment explanation
Indices: 16353873--16353952 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
16353863 TGTTCCAGAC
16353873 ATATGTAATGTTCATTTTGTATCTTGATGGTATTTGAGTT
1 ATATGTAATGTTCATTTTGTATCTTGATGGTATTTGAGTT
16353913 ATATGTAATGTTCATTTTGTATCTTGATGGTATTTGAGTT
1 ATATGTAATGTTCATTTTGTATCTTGATGGTATTTGAGTT
16353953 CTAAGTTTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.05, G:0.20, T:0.53
Consensus pattern (40 bp):
ATATGTAATGTTCATTTTGTATCTTGATGGTATTTGAGTT
Found at i:16359264 original size:6 final size:6
Alignment explanation
Indices: 16359245--16359277 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
16359235 AGATTGGAAG
*
16359245 TTTCCA TTTTCA TTTCCA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
16359278 TTGGAAACCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (6 bp):
TTTCCA
Found at i:16359592 original size:22 final size:23
Alignment explanation
Indices: 16359556--16359604 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
16359546 GACATAAGGT
*
16359556 GTAATATCCCAAAAATTACTAC-
1 GTAATACCCCAAAAATTACTACA
*
16359578 GTAATACCCCGAAAATTACTACA
1 GTAATACCCCAAAAATTACTACA
16359601 GTAA
1 GTAA
16359605 GAAAGTAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.45, C:0.22, G:0.08, T:0.24
Consensus pattern (23 bp):
GTAATACCCCAAAAATTACTACA
Found at i:16365120 original size:50 final size:50
Alignment explanation
Indices: 16365010--16365246 Score: 289
Period size: 50 Copynumber: 4.7 Consensus size: 50
16365000 ACATTAAGAG
**
16365010 GATGAGA--TCCCATGTAAGACCACATCTGGGACATGGCATTGGCATCATCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA
* * *
16365061 GATTATGAGAGGTCCCATGTAAAACCATGTCTGGGGCATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
16365114 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
** * *
16365164 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* ** *
16365214 TATGAGAACTCCCATGTAAGACCATATCTGGGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGA
16365247 TGTGGTATTA
Statistics
Matches: 163, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
50 119 0.73
51 1 0.01
53 4 0.02
54 6 0.04
55 1 0.01
56 32 0.20
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
Found at i:16370849 original size:39 final size:40
Alignment explanation
Indices: 16370772--16370878 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
16370762 TAGCTCCTCG
* * *
16370772 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATATTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATATAAACTCA
* *
16370812 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
**
16370851 CACGAATGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
16370879 ATTAGTATCT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
39 25 0.43
40 33 0.57
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATATAAACTCA
Found at i:16370877 original size:79 final size:80
Alignment explanation
Indices: 16370778--16370998 Score: 193
Period size: 80 Copynumber: 2.8 Consensus size: 80
16370768 CTCGTTCAAG
* * * ** * *
16370778 TGCCTTCGGGACATAGCCCGG-TTATATTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGAAT-TAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
16370841 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
16370857 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
16370922 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
16370937 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
16370999 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
79 36 0.31
80 75 0.64
81 6 0.05
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:16370929 original size:80 final size:80
Alignment explanation
Indices: 16370818--16370998 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
16370808 CTCATTCAAT
* * *
16370818 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
16370881 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
16370897 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
16370961 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
16370978 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
16370999 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:16370958 original size:40 final size:40
Alignment explanation
Indices: 16370815--16370998 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
16370805 TAACTCATTC
* *
16370815 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
16370855 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
16370895 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
16370935 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
16370976 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
16370999 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:16380107 original size:15 final size:16
Alignment explanation
Indices: 16380087--16380121 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
16380077 GTCACATATT
16380087 TTTTTTTAATA-TTTA
1 TTTTTTTAATATTTTA
16380102 TTTTTTTAATATTTTA
1 TTTTTTTAATATTTTA
16380118 TTTT
1 TTTT
16380122 ACTTTATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTTTAATATTTTA
Found at i:16381045 original size:9 final size:8
Alignment explanation
Indices: 16381024--16381060 Score: 65
Period size: 8 Copynumber: 4.6 Consensus size: 8
16381014 AAATTTATTC
16381024 AAAATTTA
1 AAAATTTA
*
16381032 AAATTTTA
1 AAAATTTA
16381040 AAAATTTA
1 AAAATTTA
16381048 AAAATTTA
1 AAAATTTA
16381056 AAAAT
1 AAAAT
16381061 GTATTCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
AAAATTTA
Found at i:16382599 original size:43 final size:43
Alignment explanation
Indices: 16382511--16382601 Score: 101
Period size: 43 Copynumber: 2.1 Consensus size: 43
16382501 ACAATGTGCG
* *
16382511 TTTTCACCTAACATGGCAATGAAAACGCTTCCTGTAGGGCATA
1 TTTTCACCTAACATGGCAATGAAAACGCTTCCTGCAAGGCATA
* * * ** * *
16382554 TTTTCACCTGACATGGTAGTGAAAATTCTTCCTGCAATGCGTA
1 TTTTCACCTAACATGGCAATGAAAACGCTTCCTGCAAGGCATA
16382597 TTTTC
1 TTTTC
16382602 CACTAAAATT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (43 bp):
TTTTCACCTAACATGGCAATGAAAACGCTTCCTGCAAGGCATA
Found at i:16387716 original size:32 final size:32
Alignment explanation
Indices: 16387676--16387900 Score: 261
Period size: 32 Copynumber: 7.0 Consensus size: 32
16387666 ATATATTACG
* ***
16387676 TATTGTCGAATTGAATTGTATAGGTATACACC
1 TATTGTCGAATTGAATTGTATATGTATACTTA
*
16387708 TATTGTCGAATTGAATTGTATATGTATACGTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
* * *
16387740 TAGTGCCAAATTGAATTGTATATGTATACTTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
* *
16387772 TAATGTCGAATTGAATTGTATATTTATACTTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
* * ***
16387804 TATTGCCGAATTGAATTGTATAGGTATACACC
1 TATTGTCGAATTGAATTGTATATGTATACTTA
* * *
16387836 TATTGTTGAACTGAATTGTATATGCATACTTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
** *
16387868 TATTACCGAATTGAATTGTATATGCATACTTA
1 TATTGTCGAATTGAATTGTATATGTATACTTA
16387900 T
1 T
16387901 GTTTCCAAAT
Statistics
Matches: 162, Mismatches: 31, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 162 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.41
Consensus pattern (32 bp):
TATTGTCGAATTGAATTGTATATGTATACTTA
Done.