Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 56 of 211
Found at i:16951733 original size:4 final size:4
Alignment explanation
Indices: 16951724--16951785 Score: 52
Period size: 4 Copynumber: 17.8 Consensus size: 4
16951714 ATGAGAAGAA
*
16951724 AAAG AAAG -AA- AAAG AAGG AAAG -AA- AAAG AAAG --AG AAAG AAAG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG
16951766 AAAG -AA- AAAG AAA- AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAA
16951786 ATAAAAATAG
Statistics
Matches: 47, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
2 2 0.04
3 15 0.32
4 30 0.64
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:16951734 original size:10 final size:10
Alignment explanation
Indices: 16951719--16951778 Score: 72
Period size: 10 Copynumber: 6.2 Consensus size: 10
16951709 AGAGAATGAG
16951719 AAGAAAAAGA
1 AAGAAAAAGA
16951729 AAGAAAAAGA
1 AAGAAAAAGA
*
16951739 AGGAAAGAA-A
1 AAGAAA-AAGA
*
16951749 AAGAAAGAGA
1 AAGAAAAAGA
16951759 AAG--AAAGA
1 AAGAAAAAGA
16951767 AAGAAAAAGA
1 AAGAAAAAGA
16951777 AA
1 AA
16951779 AAAGAAAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
8 7 0.17
9 1 0.02
10 32 0.76
11 2 0.05
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (10 bp):
AAGAAAAAGA
Found at i:16951746 original size:14 final size:16
Alignment explanation
Indices: 16951719--16951785 Score: 79
Period size: 14 Copynumber: 4.4 Consensus size: 16
16951709 AGAGAATGAG
*
16951719 AAGAAAAAGAAAGAAA
1 AAGAAAGAGAAAGAAA
16951735 AAG-AAG-GAAAGAAA
1 AAGAAAGAGAAAGAAA
16951749 AAGAAAGAGAAAG--A
1 AAGAAAGAGAAAGAAA
*
16951763 AAGAAAGAAAAAGAAAA
1 AAGAAAGAGAAAG-AAA
16951780 AAGAAA
1 AAGAAA
16951786 ATAAAAATAG
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
14 24 0.55
15 5 0.11
16 8 0.18
17 7 0.16
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AAGAAAGAGAAAGAAA
Found at i:16951746 original size:24 final size:24
Alignment explanation
Indices: 16951719--16951778 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
16951709 AGAGAATGAG
*
16951719 AAGAAAAAGAAAGAAAAAGAAGGA
1 AAGAAAAAGAAAGAAAAAGAAAGA
*
16951743 AAGAAAAAGAAAGAGAAAGAAAGA
1 AAGAAAAAGAAAGAAAAAGAAAGA
16951767 AAGAAAAAGAAA
1 AAGAAAAAGAAA
16951779 AAAGAAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (24 bp):
AAGAAAAAGAAAGAAAAAGAAAGA
Found at i:16958759 original size:18 final size:18
Alignment explanation
Indices: 16958715--16958759 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
16958705 GTAATAAAAA
16958715 AACGTTTTGAAATTGAAT
1 AACGTTTTGAAATTGAAT
*
16958733 AACGATTTGTAAA-TGAAT
1 AACGTTTTG-AAATTGAAT
*
16958751 AATGTTTTG
1 AACGTTTTG
16958760 GAAACGAACG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.38, C:0.04, G:0.18, T:0.40
Consensus pattern (18 bp):
AACGTTTTGAAATTGAAT
Found at i:16964345 original size:74 final size:73
Alignment explanation
Indices: 16964149--16965553 Score: 1738
Period size: 74 Copynumber: 18.9 Consensus size: 73
16964139 TCTGTTTTAA
* * *
16964149 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCATGTCGAGGTATTGTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16964214 TCATTTTTC
66 TC-TTTTTC
* * *
16964223 AAAAAAATCAACACATAATCTGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTCTCAA
1 --AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAA
16964288 TTT-TTTTTC
64 TTTCTTTTTC
* * *
16964297 AAAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTTGGGCCGCACGCCAAGGTATTTTCAA
1 --AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAA
16964362 TTTCGTTTTTC
64 TTTC-TTTTTC
* * * * * *
16964373 AAAAATCAACTCATAATTCAAGAGGTGAGTTGACCCTCAGGTCACACGCCGAGGTATTCTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16964438 TCGTTTTTC
66 TC-TTTTTC
** *
16964447 AAAAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCAAGTCGTACGCCGAGGTATTTTCAA
1 --AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAA
16964512 TTTCATTTTTC
64 TTTC-TTTTTC
* * *
16964523 AAAAATCAACTCATAATCTGAGAGGTGAGTTGAGCCTCGGGTCGCATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAA-T
16964588 TTCTTTTTC
65 TTCTTTTTC
* * * * *
16964597 AAAAATCAACTCATAATCCGAGAGGTAAGTTGAGCATCGGGTCGTATGCCAAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16964662 TCATTTTTC
66 TC-TTTTTC
* * * * * *
16964671 AAAAACCAACTCATAATCTGAAAGGTGAGTTGAGCCTTGGGTCGCATGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16964736 TCGTTTTTC
66 TC-TTTTTC
* * * * * * *
16964745 AAAAATCAACTCATAATCTGAGAGCTGAATTGATCTTTGGGTCGCACACCGAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16964810 T-TGTTCTTC
66 TCT-TT-TTC
*
16964819 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16964884 TCTTTTTTC
66 TC-TTTTTC
* * * * * *
16964893 AAAATTCAACTCATAATTCGAGAGGTGAGTTGAGCCCCGAGTCAG-ACGCTGAGGTATTTTCAGT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTC-GCACGCCGAGGTATTTTCAAT
*
16964957 TTTTTTTTC
65 TTCTTTTTC
*
16964966 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16965031 TCCTTTTTC
66 T-CTTTTTC
* * * ** *
16965040 AAAATTCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGAGTCGGACGCTAAGGTATTTTCAGTT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16965105 T-TGTTATTC
66 TCT-TT-TTC
* * * *
16965114 AAAAATCAACTTATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACACTGAGGTATTTTTAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAA--
*
16965179 TTTTTTTTTC
64 TTTCTTTTTC
* *
16965189 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTTGCACGTCGAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16965254 TCATTTTTC
66 TC-TTTTTC
* * ** * ** *
16965263 AAAATTCAACTTATAATTTGAGAGGTGAGTTGAGCCTCCGGTCGCACGTTGAGGTATTTTTAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16965328 TCGTTTTTC
66 TC-TTTTTC
* * *
16965337 AAAAATCAACTCATAATCTGAGAGGTGAGTTGAGCTTCGGGTCGCACACCGAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
*
16965402 ATATTTTTC
66 -TCTTTTTC
* ** **
16965411 AAAAATCAACTAATAATTTGAGAGGTGAGTTGAGCCTCGATTCGCACGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16965476 TCTATTTTTTC
66 TC---TTTTTC
* * * * * ** * * *
16965487 AAATATCAACTCATAATTCAAGAGGTAAGTTGAGCTTCGGGTTACACGCGGAAGTATTTTAAATT
1 AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
16965552 TC
66 TC
16965554 AGTCTTATTT
Statistics
Matches: 1168, Mismatches: 138, Indels: 46
0.86 0.10 0.03
Matches are distributed among these distances:
72 3 0.00
73 77 0.07
74 820 0.70
75 68 0.06
76 199 0.17
77 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGTCGCACGCCGAGGTATTTTCAATT
TCTTTTTC
Found at i:16965837 original size:14 final size:14
Alignment explanation
Indices: 16965818--16965914 Score: 58
Period size: 14 Copynumber: 6.9 Consensus size: 14
16965808 AGCTGTAATC
16965818 ACAGCAGCAGCCCA
1 ACAGCAGCAGCCCA
* *
16965832 ACAGCAACAACCCA
1 ACAGCAGCAGCCCA
**
16965846 ACAGCAATAGCCCA
1 ACAGCAGCAGCCCA
*
16965860 ACAACAG-A-CCCA
1 ACAGCAGCAGCCCA
* *
16965872 CTCCAGCAGTAGCCCA
1 --ACAGCAGCAGCCCA
16965888 ATC--CAGTCAGCCCA
1 A-CAGCAG-CAGCCCA
*
16965902 ACAGCAGTAGCCC
1 ACAGCAGCAGCCC
16965915 TACCCAGCAA
Statistics
Matches: 64, Mismatches: 11, Indels: 16
0.70 0.12 0.18
Matches are distributed among these distances:
12 4 0.06
13 5 0.08
14 46 0.72
15 5 0.08
16 4 0.06
ACGTcount: A:0.37, C:0.41, G:0.15, T:0.06
Consensus pattern (14 bp):
ACAGCAGCAGCCCA
Found at i:16965921 original size:28 final size:27
Alignment explanation
Indices: 16965818--16965935 Score: 87
Period size: 28 Copynumber: 4.3 Consensus size: 27
16965808 AGCTGTAATC
* * *
16965818 ACAGCAGCAGCCCAACAGCAACAACCCA
1 ACAGCAGTAGCCCAAC-CCAGCAACCCA
* *
16965846 ACAGCAATAGCCCAA--CAACAGACCCA
1 ACAGCAGTAGCCCAACCCAGCA-ACCCA
* * *
16965872 CTCCAGCAGTAGCCCAATCCAGTCAGCCCA
1 --ACAGCAGTAGCCCAACCCAG-CAACCCA
*
16965902 ACAGCAGTAGCCCTACCCAGCAACCCA
1 ACAGCAGTAGCCCAACCCAGCAACCCA
*
16965929 GCAGCAG
1 ACAGCAG
16965936 GCCAGTCTCA
Statistics
Matches: 73, Mismatches: 11, Indels: 13
0.75 0.11 0.13
Matches are distributed among these distances:
25 5 0.07
26 5 0.07
27 12 0.16
28 43 0.59
30 6 0.08
31 2 0.03
ACGTcount: A:0.36, C:0.42, G:0.16, T:0.06
Consensus pattern (27 bp):
ACAGCAGTAGCCCAACCCAGCAACCCA
Found at i:16967273 original size:25 final size:25
Alignment explanation
Indices: 16967235--16967306 Score: 117
Period size: 25 Copynumber: 2.9 Consensus size: 25
16967225 GAGCAGAGCC
* * *
16967235 ATATTCACAGCTCGTGTGAGTATTT
1 ATATTCACAACTCGTGTAAGCATTT
16967260 ATATTCACAACTCGTGTAAGCATTT
1 ATATTCACAACTCGTGTAAGCATTT
16967285 ATATTCACAACTCGTGTAAGCA
1 ATATTCACAACTCGTGTAAGCA
16967307 ACTCTATCCC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (25 bp):
ATATTCACAACTCGTGTAAGCATTT
Found at i:16989146 original size:6 final size:6
Alignment explanation
Indices: 16989137--16989165 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
16989127 AAGATGAAGA
16989137 TGTTTT TGTTTT TGTTTT TGTTTT T-TTTT
1 TGTTTT TGTTTT TGTTTT TGTTTT TGTTTT
16989166 AAACGTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 19 0.83
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TGTTTT
Found at i:16992826 original size:20 final size:20
Alignment explanation
Indices: 16992801--16992841 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
16992791 ACTTCTTTTA
*
16992801 AAGTCTTTCCAATATGGAGG
1 AAGTCTGTCCAATATGGAGG
* *
16992821 AAGTCTGTCTATTATGGAGG
1 AAGTCTGTCCAATATGGAGG
16992841 A
1 A
16992842 TACAAAAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.32
Consensus pattern (20 bp):
AAGTCTGTCCAATATGGAGG
Found at i:16995297 original size:21 final size:23
Alignment explanation
Indices: 16995271--16995319 Score: 66
Period size: 21 Copynumber: 2.2 Consensus size: 23
16995261 TCGACTAAGT
* *
16995271 TAAATTTAAATTA-TTTTT-TTA
1 TAAATTAAAATAATTTTTTGTTA
16995292 TAAATTAAAATAATTTTTTGTTA
1 TAAATTAAAATAATTTTTTGTTA
16995315 TAAAT
1 TAAAT
16995320 AGGCGGATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.46
22 5 0.21
23 8 0.33
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TAAATTAAAATAATTTTTTGTTA
Found at i:16995308 original size:20 final size:21
Alignment explanation
Indices: 16995271--16995310 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
16995261 TCGACTAAGT
* *
16995271 TAAATTTAAATTATTTTTTTA
1 TAAATTTAAAATAATTTTTTA
16995292 TAAA-TTAAAATAATTTTTT
1 TAAATTTAAAATAATTTTTT
16995311 GTTATAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TAAATTTAAAATAATTTTTTA
Found at i:16998399 original size:18 final size:18
Alignment explanation
Indices: 16998339--16998388 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
16998329 TCCTCACCTA
16998339 CATCTTCTTCCTCAATCG
1 CATCTTCTTCCTCAATCG
* **
16998357 CATCTTATTCCTCGGTCG
1 CATCTTCTTCCTCAATCG
16998375 CATCTTCTTCCTCA
1 CATCTTCTTCCTCA
16998389 TCTGCACCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.14, C:0.38, G:0.08, T:0.40
Consensus pattern (18 bp):
CATCTTCTTCCTCAATCG
Found at i:16999678 original size:20 final size:19
Alignment explanation
Indices: 16999634--16999680 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
16999624 TGCCAAGCCA
*
16999634 TTTTTTTATTTTTTTATTT
1 TTTTTTTATTTTTTTATCT
16999653 TATTTTTTATTCTTTCTT-TCT
1 T-TTTTTTATT-TTT-TTATCT
16999674 TTTTTTT
1 TTTTTTT
16999681 TTGCATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
19 1 0.04
20 15 0.62
21 6 0.25
22 2 0.08
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (19 bp):
TTTTTTTATTTTTTTATCT
Found at i:17004511 original size:57 final size:58
Alignment explanation
Indices: 17004429--17004547 Score: 179
Period size: 57 Copynumber: 2.1 Consensus size: 58
17004419 AGAAATGGTG
*
17004429 AAATGGAGAAATAGGAAACATTTGGAAATGATTATGGTTTTCTCCAAAATG-AAAATGA
1 AAATGGAGAAATA-GAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
* *
17004487 AAATGGAGAAATA-AAATCATTTGGAAATGAATGTGGTTTTCTCCAAAGTGAAAAATGA
1 AAATGGAGAAATAGAAA-CATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
17004545 AAA
1 AAA
17004548 AGACTTGAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
56 3 0.05
57 30 0.54
58 23 0.41
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.27
Consensus pattern (58 bp):
AAATGGAGAAATAGAAACATTTGGAAATGAATATGGTTTTCTCCAAAATGAAAAATGA
Found at i:17008761 original size:23 final size:23
Alignment explanation
Indices: 17008734--17008787 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
17008724 GGTCAAATGA
17008734 TGGTATGTTTTGAATGACCAACT
1 TGGTATGTTTTGAATGACCAACT
17008757 TGGTATGTTTTGAATGACCAACT
1 TGGTATGTTTTGAATGACCAACT
*
17008780 TGGCATGT
1 TGGTATGT
17008788 AGTCATTGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.39
Consensus pattern (23 bp):
TGGTATGTTTTGAATGACCAACT
Found at i:17014384 original size:17 final size:17
Alignment explanation
Indices: 17014355--17014397 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
17014345 TCAGAATTTC
* *
17014355 ATAA-GTTTGGTAATCA
1 ATAATGTTTTGTAACCA
17014371 ATAATGTTTTGTAACCA
1 ATAATGTTTTGTAACCA
17014388 ATAATGTTTT
1 ATAATGTTTT
17014398 CAATAATGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.35, C:0.07, G:0.14, T:0.44
Consensus pattern (17 bp):
ATAATGTTTTGTAACCA
Found at i:17024789 original size:15 final size:15
Alignment explanation
Indices: 17024769--17024799 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
17024759 ATTTTAATCA
*
17024769 AGTAAAAGTTCTTTT
1 AGTAAAAATTCTTTT
17024784 AGTAAAAATTCTTTT
1 AGTAAAAATTCTTTT
17024799 A
1 A
17024800 ACTATTCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (15 bp):
AGTAAAAATTCTTTT
Found at i:17025933 original size:11 final size:11
Alignment explanation
Indices: 17025919--17025944 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17025909 ATTTTTTTAA
17025919 TTTTAAAATAC
1 TTTTAAAATAC
17025930 TTTTAAAATAC
1 TTTTAAAATAC
17025941 TTTT
1 TTTT
17025945 TTTAATTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:17025956 original size:40 final size:40
Alignment explanation
Indices: 17025902--17026052 Score: 170
Period size: 40 Copynumber: 3.7 Consensus size: 40
17025892 ATATAATAAA
17025902 TTTTTTT-ATTTTTTTAA-TTTTAAAATACTTTTAAAATAC
1 TTTTTTTAATTTTTTTAAGTTTTAAAATA-TTTTAAAATAC
*
17025941 TTTTTTTAATTTTTTTAAAGTTTTTAAAT-TTTTAAAAAATAC
1 TTTTTTTAATTTTTTT-AAGTTTTAAAATATTTT--AAAATAC
17025983 -TTTTTTAA-TTTTTTAA-TTTTAAAATATTTTTAAAATAC
1 TTTTTTTAATTTTTTTAAGTTTTAAAATA-TTTTAAAATAC
*
17026021 TTTTTTTAATTTTTGTTTTAATTTTTAAAATA
1 TTTTTTTAA--TTT-TTTTAAGTTTTAAAATA
17026053 AATTTTTGGT
Statistics
Matches: 97, Mismatches: 2, Indels: 21
0.81 0.02 0.17
Matches are distributed among these distances:
38 15 0.15
39 17 0.18
40 22 0.23
41 10 0.10
42 17 0.18
43 6 0.06
44 10 0.10
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (40 bp):
TTTTTTTAATTTTTTTAAGTTTTAAAATATTTTAAAATAC
Found at i:17026357 original size:19 final size:21
Alignment explanation
Indices: 17026335--17026379 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
17026325 GGAATAAGTC
*
17026335 AAAAAA-TATGGGCAAACT-T
1 AAAAAATTAAGGGCAAACTAT
*
17026354 AAAAAATTAAGGGTAAACTAT
1 AAAAAATTAAGGGCAAACTAT
17026375 AAAAA
1 AAAAA
17026380 TAGTCACCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 10 0.45
21 6 0.27
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (21 bp):
AAAAAATTAAGGGCAAACTAT
Found at i:17026662 original size:7 final size:7
Alignment explanation
Indices: 17026652--17026699 Score: 69
Period size: 8 Copynumber: 6.4 Consensus size: 7
17026642 TCAAAAATAA
17026652 AAATTTT
1 AAATTTT
17026659 AAATTTT
1 AAATTTT
17026666 AAATTTT
1 AAATTTT
17026673 AAAATTTT
1 -AAATTTT
17026681 AAAATTTT
1 -AAATTTT
17026689 AAATATTT
1 AAAT-TTT
17026697 AAA
1 AAA
17026700 AAAATATATT
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.46
8 21 0.54
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
AAATTTT
Found at i:17026679 original size:8 final size:8
Alignment explanation
Indices: 17026651--17026700 Score: 70
Period size: 7 Copynumber: 6.5 Consensus size: 8
17026641 TTCAAAAATA
17026651 AAAATTTT
1 AAAATTTT
17026659 -AAATTTT
1 AAAATTTT
17026666 -AAATTTT
1 AAAATTTT
17026673 AAAATTTT
1 AAAATTTT
17026681 AAAATTTT
1 AAAATTTT
17026689 -AAATATTT
1 AAAAT-TTT
17026697 AAAA
1 AAAA
17026701 AAATATATTT
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
7 18 0.46
8 18 0.46
9 3 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AAAATTTT
Found at i:17026811 original size:21 final size:21
Alignment explanation
Indices: 17026787--17026842 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 21
17026777 TTCTAACATG
* *
17026787 AATTTTATTTATTAAAATAAT
1 AATTTTATTAAATAAAATAAT
17026808 AATTTTA-TAAATAAAATAAT
1 AATTTTATTAAATAAAATAAT
*
17026828 AATCTTA-TAAATAAA
1 AATTTTATTAAATAAA
17026843 CCAATTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 25 0.78
21 7 0.22
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
AATTTTATTAAATAAAATAAT
Found at i:17026824 original size:20 final size:20
Alignment explanation
Indices: 17026799--17026842 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
17026789 TTTTATTTAT
*
17026799 TAAAATAATAATTTTATAAA
1 TAAAATAATAATCTTATAAA
17026819 TAAAATAATAATCTTATAAA
1 TAAAATAATAATCTTATAAA
17026839 TAAA
1 TAAA
17026843 CCAATTTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
TAAAATAATAATCTTATAAA
Found at i:17028014 original size:20 final size:19
Alignment explanation
Indices: 17027989--17028034 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
17027979 CGGATATAAA
17027989 TTAAAAAAATAAAAAATATT
1 TTAAAAAAATAAAAAA-ATT
* **
17028009 TTAAAAATATAAACTAATT
1 TTAAAAAAATAAAAAAATT
17028028 TTAAAAA
1 TTAAAAA
17028035 GTATACTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAAAAAAATAAAAAAATT
Found at i:17028016 original size:18 final size:19
Alignment explanation
Indices: 17027993--17028034 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
17027983 TATAAATTAA
17027993 AAAAATAAAAAAT-ATTTT
1 AAAAATAAAAAATAATTTT
* *
17028011 AAAAATATAAACTAATTTT
1 AAAAATAAAAAATAATTTT
17028030 AAAAA
1 AAAAA
17028035 GTATACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAAATAAAAAATAATTTT
Found at i:17028028 original size:19 final size:18
Alignment explanation
Indices: 17027993--17028039 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
17027983 TATAAATTAA
*
17027993 AAAAATAAAAAATATTTT
1 AAAAATATAAAATATTTT
*
17028011 AAAAATATAAACTAATTTT
1 AAAAATATAAAAT-ATTTT
17028030 AAAAAGTATA
1 AAAAA-TATA
17028040 CTTTTTGGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 11 0.44
19 10 0.40
20 4 0.16
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
AAAAATATAAAATATTTT
Found at i:17033644 original size:59 final size:59
Alignment explanation
Indices: 17033563--17033679 Score: 189
Period size: 59 Copynumber: 2.0 Consensus size: 59
17033553 CTTGCAGTTT
* *
17033563 CTGTGGCAGCTGATATTCATTTCTTCAGTGTCAGCTCCCTTCTTAATAAGGTACTCTTA
1 CTGTAGCACCTGATATTCATTTCTTCAGTGTCAGCTCCCTTCTTAATAAGGTACTCTTA
* * *
17033622 CTGTAGCACCTGATATTCATTTCTTCTGTGTCAGCTCCCTTCTTAGTAAGTTACTCTT
1 CTGTAGCACCTGATATTCATTTCTTCAGTGTCAGCTCCCTTCTTAATAAGGTACTCTT
17033680 TAATTAAGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.41
Consensus pattern (59 bp):
CTGTAGCACCTGATATTCATTTCTTCAGTGTCAGCTCCCTTCTTAATAAGGTACTCTTA
Found at i:17037760 original size:74 final size:74
Alignment explanation
Indices: 17037637--17037787 Score: 203
Period size: 74 Copynumber: 2.0 Consensus size: 74
17037627 TAGTAGACAT
* * * *
17037637 AATTACTGTGGCATTTTCGACAATATAGTGTTATCTTATACTTTATGCTGAAAGATTTTTATAAT
1 AATTACTGTGGCATTTTCGACAAGATAGTGTCATCTTATACTTTATGCTGAAAGATTCTTAGAAT
17037702 TTGTTTTCA
66 TTGTTTTCA
* * * * ** *
17037711 AATTAGTGTGGCATTTTCTACAAGATTGTGTCATCTTGTGTTTTGTGCTGAAAGATTCTTAGAAT
1 AATTACTGTGGCATTTTCGACAAGATAGTGTCATCTTATACTTTATGCTGAAAGATTCTTAGAAT
17037776 TTGTTTTCA
66 TTGTTTTCA
17037785 AAT
1 AAT
17037788 GTTTTTACCA
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
74 66 1.00
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.46
Consensus pattern (74 bp):
AATTACTGTGGCATTTTCGACAAGATAGTGTCATCTTATACTTTATGCTGAAAGATTCTTAGAAT
TTGTTTTCA
Found at i:17041507 original size:38 final size:38
Alignment explanation
Indices: 17041464--17041539 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
17041454 TGCTAAATAA
* *
17041464 GCATTGAATATGCTAAATTTTAGATAAATATATACAAC
1 GCATTGAATATGCTAAATGTTAGATAAATATAGACAAC
17041502 GCATTGAATATGCTAAATGTTAGATAAATATAGACAAC
1 GCATTGAATATGCTAAATGTTAGATAAATATAGACAAC
17041540 TGGCTAAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (38 bp):
GCATTGAATATGCTAAATGTTAGATAAATATAGACAAC
Found at i:17045168 original size:30 final size:30
Alignment explanation
Indices: 17045132--17045193 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
17045122 TGCAACAGGA
* *
17045132 GGTGGGTTTGCT-GGTTTGGGTTCAGGTGGT
1 GGTGGGTTTGCTGGGGTT-GCTTCAGGTGGT
*
17045162 GGTGGGTTTTCTGGGGTTGCTTCAGGTGGT
1 GGTGGGTTTGCTGGGGTTGCTTCAGGTGGT
17045192 GG
1 GG
17045194 ATTTGGTGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 24 0.86
31 4 0.14
ACGTcount: A:0.03, C:0.08, G:0.50, T:0.39
Consensus pattern (30 bp):
GGTGGGTTTGCTGGGGTTGCTTCAGGTGGT
Found at i:17050329 original size:25 final size:25
Alignment explanation
Indices: 17050277--17050355 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
17050267 AGCTCCTTCG
** *
17050277 AGCTGAATAACGGTAAGCTCCT-CTA
1 AGCTGAATAATAGTAAGCTCATAC-A
17050302 AGCTGAATAATAGTAAGCTCATACA
1 AGCTGAATAATAGTAAGCTCATACA
* *
17050327 AGCTGAGT-ATAGGTAAGCTCATAAA
1 AGCTGAATAATA-GTAAGCTCATACA
17050352 AGCT
1 AGCT
17050356 AAAATCGGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
24 3 0.06
25 43 0.91
26 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (25 bp):
AGCTGAATAATAGTAAGCTCATACA
Found at i:17055353 original size:29 final size:29
Alignment explanation
Indices: 17055279--17055353 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 29
17055269 CCATACGACC
* * *
17055279 GTGTGCTAGATTGTGTGAGTGACATGGGA
1 GTGTGCTAGGTTGTGTGAGTCACACGGGA
* ** *
17055308 GTGCG-TCAGGTCATGTGGGTCACACGGGA
1 GTGTGCT-AGGTTGTGTGAGTCACACGGGA
17055337 GTGTGCTAGGTTGTGTG
1 GTGTGCTAGGTTGTGTG
17055354 CCAGGCCTTA
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
28 1 0.03
29 32 0.94
30 1 0.03
ACGTcount: A:0.16, C:0.12, G:0.43, T:0.29
Consensus pattern (29 bp):
GTGTGCTAGGTTGTGTGAGTCACACGGGA
Found at i:17060624 original size:42 final size:43
Alignment explanation
Indices: 17060577--17060662 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 43
17060567 TTCCAAGGAG
* * * *
17060577 TGATTTCATGTAAGAGCATGTCTGGGACATTGGCATCG-TATA
1 TGATTTCATATAAGACCATGCCTGGGACAATGGCATCGATATA
* *
17060619 TGATTTCTTATAAGACCTTGCCTGGGACAATGGCATCGATATA
1 TGATTTCATATAAGACCATGCCTGGGACAATGGCATCGATATA
17060662 T
1 T
17060663 TATAACATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 32 0.86
43 5 0.14
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (43 bp):
TGATTTCATATAAGACCATGCCTGGGACAATGGCATCGATATA
Found at i:17066351 original size:54 final size:54
Alignment explanation
Indices: 17066240--17066351 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
17066230 GAAAACCTCG
* * * *
17066240 TAGTGTAAGACCTAGTCTAGGACTATGGCATCGTATGGGGATACGAAGACCATA
1 TAGTGTAAGACCTAGTCTAGGACTATGGCATCATATGAGGATAAGAAGACCACA
17066294 TAGTGTAAGACCTAGTCTAGGACTATGGCATCATATGAGGATAAG-AGAACCACA
1 TAGTGTAAGACCTAGTCTAGGACTATGGCATCATATGAGGATAAGAAG-ACCACA
17066348 TAGT
1 TAGT
17066352 TTACCTCACT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.04
54 51 0.96
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (54 bp):
TAGTGTAAGACCTAGTCTAGGACTATGGCATCATATGAGGATAAGAAGACCACA
Found at i:17066492 original size:18 final size:20
Alignment explanation
Indices: 17066469--17066506 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
17066459 ATGCATACAA
17066469 AGGAAAG-ATGAA-AGAAAG
1 AGGAAAGCATGAAGAGAAAG
17066487 AGGAAAGCATGAAGAGAAAG
1 AGGAAAGCATGAAGAGAAAG
17066507 CTATATGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 7 0.39
19 5 0.28
20 6 0.33
ACGTcount: A:0.58, C:0.03, G:0.34, T:0.05
Consensus pattern (20 bp):
AGGAAAGCATGAAGAGAAAG
Found at i:17069371 original size:38 final size:42
Alignment explanation
Indices: 17069319--17069839 Score: 439
Period size: 49 Copynumber: 11.0 Consensus size: 42
17069309 ATATACACTT
17069319 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
17069363 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
* *
17069410 CTTTCACATTCATCACATCGGCCATTAGGCCCTATCATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
17069457 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
*
17069506 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAAATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATC--ACATATATA-A
*
17069555 CTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
*
17069604 CTTTCACATTCATCACATCGGCCATTGGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
17069653 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCAC--ATATATA-A
17069702 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
*
17069749 CTTTCACATTCATCACATCAGCCATTAGGCCTTATCACATATATACA
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATATA-A
17069796 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ---TCACATT-ATCACATCGGCCATTAGGCCTTATCACATATAT
17069840 GCATGTTCAC
Statistics
Matches: 458, Mismatches: 10, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
47 224 0.49
49 233 0.51
51 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (42 bp):
TCACATTATCACATCGGCCATTAGGCCTTATCACATATATAA
Found at i:17069502 original size:49 final size:49
Alignment explanation
Indices: 17069252--17069839 Score: 961
Period size: 47 Copynumber: 12.3 Consensus size: 49
17069242 CCCTTCGGGA
* * * * * *
17069252 CTTATCACAT-T-TATATACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
17069299 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17069346 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17069393 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
17069440 CCTAT--CATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17069487 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
17069536 CTTATCAAATATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
17069585 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17069634 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17069683 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
17069732 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17069779 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
17069826 CTTATCACATATAT
1 CTTATCACATATAT
17069840 GCATGTTCAC
Statistics
Matches: 515, Mismatches: 18, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 267 0.52
49 246 0.48
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:17074297 original size:24 final size:22
Alignment explanation
Indices: 17074246--17074304 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
17074236 GTCCCCCGAG
*
17074246 GGGCTCTCAAACGTCCCATAAA
1 GGGCTCTCATACGTCCCATAAA
*
17074268 GGGCTCTTATACGTCCCATACAAA
1 GGGCTCTCATACGTCCCAT--AAA
17074292 GGGCTCTCATACG
1 GGGCTCTCATACG
17074305 AGTGTGCACC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 17 0.53
24 15 0.47
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.22
Consensus pattern (22 bp):
GGGCTCTCATACGTCCCATAAA
Found at i:17082893 original size:30 final size:30
Alignment explanation
Indices: 17082854--17082911 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
17082844 AACGAGTAGC
*
17082854 ACACACAATCAATGAGACGGTAGAATTAGT
1 ACACACAATCAATAAGACGGTAGAATTAGT
*
17082884 ACACGCAATCAATAAGACGGTAGAATTA
1 ACACACAATCAATAAGACGGTAGAATTA
17082912 TGTCCATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.45, C:0.17, G:0.19, T:0.19
Consensus pattern (30 bp):
ACACACAATCAATAAGACGGTAGAATTAGT
Found at i:17084786 original size:46 final size:46
Alignment explanation
Indices: 17084733--17084827 Score: 163
Period size: 46 Copynumber: 2.1 Consensus size: 46
17084723 ATTTAATTTC
* * *
17084733 ATTAGTTAACATTTCAATAGTCGTATAAACACATCATTTCTAAGCA
1 ATTAGTTAACATTTCAATAGACATATAAACACATCATTTCCAAGCA
17084779 ATTAGTTAACATTTCAATAGACATATAAACACATCATTTCCAAGCA
1 ATTAGTTAACATTTCAATAGACATATAAACACATCATTTCCAAGCA
17084825 ATT
1 ATT
17084828 CAGGAAGTCA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (46 bp):
ATTAGTTAACATTTCAATAGACATATAAACACATCATTTCCAAGCA
Found at i:17087049 original size:43 final size:43
Alignment explanation
Indices: 17086996--17087349 Score: 288
Period size: 43 Copynumber: 8.3 Consensus size: 43
17086986 AAGCACCGCA
* * * **
17086996 AAAACTCCGCTATAAATCATGACCTTTAGCGGCGCTTTTTCTG
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC
* * * * **
17087039 AAAACGCCGCTATGGATAAAGACTTTTAGCGACGCTTTCCCAC
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC
* * **
17087082 -AAACGCCGCTATAGATCATGACCTTTAACGGTACTTTTTCAC
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC
* * * *****
17087124 -AAACGCTGCTATAGATTAGGACCTTTAGCGGCGCAACCACAC
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC
* *
17087166 AAAACGCCGCTATAGATCAGGACCTTTAGCGACGCTTTTTCAC
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC
* * * *
17087209 AAAATGCCGCTATAGATCAAGACTTTTAGCAGC-ATTTGTTC-C
1 AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTT-TTCAC
* ** * * *
17087251 ACGAACGATGCTATAGATAAAGACCTTTAGCGGCACTTTTTCCC
1 A-AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC
* *
17087295 ACAAACACCGCTATAGAACAA-ACCTTTAGCGGCG-TTTTTCAC
1 A-AAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC
*
17087337 ACAAACACCGCTA
1 A-AAACGCCGCTA
17087350 AAACATATCT
Statistics
Matches: 244, Mismatches: 62, Indels: 11
0.77 0.20 0.03
Matches are distributed among these distances:
42 88 0.36
43 137 0.56
44 19 0.08
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
AAAACGCCGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCAC
Found at i:17087100 original size:85 final size:83
Alignment explanation
Indices: 17086997--17087311 Score: 267
Period size: 85 Copynumber: 3.7 Consensus size: 83
17086987 AGCACCGCAA
* * * *
17086997 AAACTCCGCTATAAATCATGACCTTTAGCGGCGCTTTTTCTGAAAACGCCGCTATGGATAAAGAC
1 AAACGCCGCTATAGATCATGACCTTTAGCGGCACTTTTTC--AAAACGCCGCTATAGATAAAGAC
17087062 TTTTAGCGACGCTTTCCCAC
64 TTTTAGCGACGCTTTCCCAC
* * * * * *
17087082 AAACGCCGCTATAGATCATGACCTTTAACGGTACTTTTTCACAAACGCTGCTATAGATTAGGACC
1 AAACGCCGCTATAGATCATGACCTTTAGCGGCACTTTTTCA-AAACGCCGCTATAGATAAAGACT
* **
17087147 TTTAGCGGCGC-AACCACAC
65 TTTAGCGACGCTTTCC-CAC
* * * * *
17087166 AAAACGCCGCTATAGATCAGGACCTTTAGCGACGCTTTTTCACAAAATGCCGCTATAGATCAAGA
1 -AAACGCCGCTATAGATCATGACCTTTAGCGGCACTTTTT--CAAAACGCCGCTATAGATAAAGA
*
17087231 CTTTTAGC-A-GCATTTGTTCCAC
63 CTTTTAGCGACGC--TT-TCCCAC
* ** * * *
17087253 GAACGATGCTATAGATAAAGACCTTTAGCGGCACTTTTTCCCACAAACACCGCTATAGA
1 AAACGCCGCTATAGATCATGACCTTTAGCGGCACTTTTT--CA-AAACGCCGCTATAGA
17087312 ACAAACCTTT
Statistics
Matches: 183, Mismatches: 37, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
83 3 0.02
84 33 0.18
85 69 0.38
86 59 0.32
87 18 0.10
88 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (83 bp):
AAACGCCGCTATAGATCATGACCTTTAGCGGCACTTTTTCAAAACGCCGCTATAGATAAAGACTT
TTAGCGACGCTTTCCCAC
Found at i:17087649 original size:25 final size:25
Alignment explanation
Indices: 17087616--17087672 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
17087606 ATATGCAAGG
* * * *
17087616 TAATAAAATATACAATGCATTTTCT
1 TAATCAAATAAACAATACATTTACT
*
17087641 TAATCAAATAAATAATACATTTACT
1 TAATCAAATAAACAATACATTTACT
17087666 TAATCAA
1 TAATCAA
17087673 GGAAATTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (25 bp):
TAATCAAATAAACAATACATTTACT
Found at i:17088433 original size:23 final size:23
Alignment explanation
Indices: 17088403--17088465 Score: 126
Period size: 23 Copynumber: 2.7 Consensus size: 23
17088393 AGGAAAAAGG
17088403 TAATTTAGATTTATACCTGCCTA
1 TAATTTAGATTTATACCTGCCTA
17088426 TAATTTAGATTTATACCTGCCTA
1 TAATTTAGATTTATACCTGCCTA
17088449 TAATTTAGATTTATACC
1 TAATTTAGATTTATACC
17088466 GTAGGGAACA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (23 bp):
TAATTTAGATTTATACCTGCCTA
Found at i:17092596 original size:21 final size:21
Alignment explanation
Indices: 17092572--17092614 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
17092562 ATAGTTACCT
17092572 ATCCATAACC-CTTAACCCCTA
1 ATCCATAACCTC-TAACCCCTA
*
17092593 ATCCTTAACCTCTAACCCCTA
1 ATCCATAACCTCTAACCCCTA
17092614 A
1 A
17092615 CCCCTCTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.33, C:0.42, G:0.00, T:0.26
Consensus pattern (21 bp):
ATCCATAACCTCTAACCCCTA
Found at i:17092600 original size:14 final size:14
Alignment explanation
Indices: 17092577--17092619 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
17092567 TACCTATCCA
17092577 TAACCCTTAACCCC
1 TAACCCTTAACCCC
* *
17092591 TAATCCTTAACCTC
1 TAACCCTTAACCCC
*
17092605 TAACCCCTAACCCC
1 TAACCCTTAACCCC
17092619 T
1 T
17092620 CTTTTATAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.28, C:0.47, G:0.00, T:0.26
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:17092618 original size:7 final size:7
Alignment explanation
Indices: 17092577--17092619 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
17092567 TACCTATCCA
*
17092577 TAACCCT
1 TAACCCC
17092584 TAACCCC
1 TAACCCC
* *
17092591 TAATCCT
1 TAACCCC
*
17092598 TAACCTC
1 TAACCCC
17092605 TAACCCC
1 TAACCCC
17092612 TAACCCC
1 TAACCCC
17092619 T
1 T
17092620 CTTTTATAAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.28, C:0.47, G:0.00, T:0.26
Consensus pattern (7 bp):
TAACCCC
Found at i:17092819 original size:7 final size:7
Alignment explanation
Indices: 17092807--17092866 Score: 59
Period size: 7 Copynumber: 8.7 Consensus size: 7
17092797 ACTAATTTAT
17092807 CTAAACC
1 CTAAACC
17092814 CTAAACC
1 CTAAACC
17092821 CTAAACC
1 CTAAACC
17092828 CTAAA-C
1 CTAAACC
* *
17092834 CTTAACT
1 CTAAACC
* *
17092841 CGAATCC
1 CTAAACC
*
17092848 CTAACCC
1 CTAAACC
*
17092855 CTAACCC
1 CTAAACC
17092862 CTAAA
1 CTAAA
17092867 TCTTATTTAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
6 5 0.12
7 38 0.88
ACGTcount: A:0.38, C:0.42, G:0.02, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:17092987 original size:14 final size:15
Alignment explanation
Indices: 17092968--17093000 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
17092958 CTTAAACCAG
17092968 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
17092982 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
17092997 AATC
1 AATC
17093001 TATAAACGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:17093453 original size:41 final size:40
Alignment explanation
Indices: 17093396--17093631 Score: 283
Period size: 41 Copynumber: 5.8 Consensus size: 40
17093386 ATAAAATGTT
* *
17093396 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAAGCCCGAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCT-AAAGCCTGAGCA
* *
17093437 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCTGAGCA
* **
17093478 TTAGCGGCGCTTTTCCAAAAATGCCGCTAAAGATTTGAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAG-CCTGAGCA
* *
17093519 TTAGCGACGCTTCTCCAAAAACGCCGCTAAAGCTCTGAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGC-CTGAGCA
** * * **
17093560 TTAGCGGCAATTTTTCAAAAACGCTGCTAAATTTCTGAGCA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAA-GCCTGAGCA
*
17093601 TTAGCGGCGCTTCTCCAAAAACGCCGCTAAA
1 TTAGCGGCGCTTTTCCAAAAACGCCGCTAAA
17093632 ACCCCGAAAG
Statistics
Matches: 169, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
40 4 0.02
41 165 0.98
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
TTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCTGAGCA
Found at i:17093538 original size:82 final size:81
Alignment explanation
Indices: 17093396--17093631 Score: 328
Period size: 82 Copynumber: 2.9 Consensus size: 81
17093386 ATAAAATGTT
*** * *
17093396 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAAGCCCGAGCATTAGCGGCGCTTTTTCAAAAACGC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAA-TTTGAGCATTAGCGGCGCTTCTCCAAAAACGC
17093461 CGCTAAAGATCTGAGCA
65 CGCTAAAGATCTGAGCA
* * *
17093478 TTAGCGGCGCTTTTCCAAAAATGCCGCTAAAGATTTGAGCATTAGCGACGCTTCTCCAAAAACGC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA-ATTTGAGCATTAGCGGCGCTTCTCCAAAAACGC
*
17093543 CGCTAAAGCTCTGAGCA
65 CGCTAAAGATCTGAGCA
** * *
17093560 TTAGCGGCAATTTTTCAAAAACGCTGCTAAATTTCTGAGCATTAGCGGCGCTTCTCCAAAAACGC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAATT-TGAGCATTAGCGGCGCTTCTCCAAAAACGC
17093625 CGCTAAA
65 CGCTAAA
17093632 ACCCCGAAAG
Statistics
Matches: 136, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
81 2 0.01
82 133 0.98
83 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (81 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAATTTGAGCATTAGCGGCGCTTCTCCAAAAACGCC
GCTAAAGATCTGAGCA
Found at i:17093618 original size:123 final size:123
Alignment explanation
Indices: 17093396--17093631 Score: 357
Period size: 123 Copynumber: 1.9 Consensus size: 123
17093386 ATAAAATGTT
* * * **
17093396 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAAGCCCGAGCATTAGCGGCGCTTTTTCAAAAACGC
1 TTAGCGACGCTTCTCCAAAAACGCCGCTAAAAGCCCGAGCATTAGCGGCAATTTTTCAAAAACGC
* *
17093461 CGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAATGCCGCTAAAGATTTGAGCA
66 CGCTAAAGATCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGATTTGAGCA
*
17093519 TTAGCGACGCTTCTCCAAAAACGCCGCT-AAAGCTCTGAGCATTAGCGGCAATTTTTCAAAAACG
1 TTAGCGACGCTTCTCCAAAAACGCCGCTAAAAGC-CCGAGCATTAGCGGCAATTTTTCAAAAACG
* **
17093583 CTGCTAAATTTCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGCTAAA
65 CCGCTAAAGATCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGCTAAA
17093632 ACCCCGAAAG
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
122 5 0.05
123 96 0.95
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (123 bp):
TTAGCGACGCTTCTCCAAAAACGCCGCTAAAAGCCCGAGCATTAGCGGCAATTTTTCAAAAACGC
CGCTAAAGATCTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGATTTGAGCA
Found at i:17094000 original size:60 final size:60
Alignment explanation
Indices: 17093927--17094046 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 60
17093917 GACAGCCAAT
* ** * *
17093927 GGCTTCTATCGGACGTAAT-AGGTAGTCATCGACTTTTGTTGGACGCAATCGGTAGCCATC
1 GGCTTCTAACGGACGTAATCA-ACAGTCATCGACTTCTGTTGGACGCAATCGATAGCCATC
* * *
17093987 GGCTTCTAACGGACGTAGTCAACAGTCATCGACTTCTGTTGGACGTAATCGATAGTCATC
1 GGCTTCTAACGGACGTAATCAACAGTCATCGACTTCTGTTGGACGCAATCGATAGCCATC
17094047 ATCTTCTATT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 50 0.98
61 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (60 bp):
GGCTTCTAACGGACGTAATCAACAGTCATCGACTTCTGTTGGACGCAATCGATAGCCATC
Found at i:17094053 original size:30 final size:30
Alignment explanation
Indices: 17093937--17094046 Score: 103
Period size: 30 Copynumber: 3.7 Consensus size: 30
17093927 GGCTTCTATC
* * *
17093937 GGACGTAATAGGTAGTCATCGACTTTTGTT
1 GGACGTAATCGATAGTCATCGACTTCTGTT
* * * * ***
17093967 GGACGCAATCGGTAGCCATCGGCTTCTAAC
1 GGACGTAATCGATAGTCATCGACTTCTGTT
* * *
17093997 GGACGTAGTCAACAGTCATCGACTTCTGTT
1 GGACGTAATCGATAGTCATCGACTTCTGTT
17094027 GGACGTAATCGATAGTCATC
1 GGACGTAATCGATAGTCATC
17094047 ATCTTCTATT
Statistics
Matches: 59, Mismatches: 21, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
30 59 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (30 bp):
GGACGTAATCGATAGTCATCGACTTCTGTT
Found at i:17098239 original size:51 final size:51
Alignment explanation
Indices: 17098160--17098500 Score: 271
Period size: 51 Copynumber: 6.7 Consensus size: 51
17098150 ATACCCGGTT
* *
17098160 CACATAGTAGCCTGCATATAGTACTACACGTGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATA
* * * * * *** ** *
17098211 CACGTAGCAGCCTGCACATAGTATTACACACGTGATCGAAGCT-ATGTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CCATTTTCATCCGATA
** ** * *
17098262 TGCATAGTAGCCTGCACATAGTACTACACATACGACC--TATCATTCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATA
* *
17098312 CACATAGTAGCCTGCATATAGTACTACACAAGTGACCATTTTCATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATA
* * * *** * *
17098363 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCA-AAGCTATTCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTC-ATCCGATA
* ** * *
17098414 CGCATAGTAGCCTGCACATAGTACTACACATGCAACC--TATCATTCCGTTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TCCGATA
* * *
17098464 CACGTAGTAGCCTACACATAGTACTACACACGTGACC
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACC
17098501 TAGCAACTTC
Statistics
Matches: 224, Mismatches: 59, Indels: 15
0.75 0.20 0.05
Matches are distributed among these distances:
48 1 0.00
49 2 0.01
50 76 0.34
51 138 0.62
52 7 0.03
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATA
Found at i:17098340 original size:101 final size:101
Alignment explanation
Indices: 17098162--17098346 Score: 246
Period size: 101 Copynumber: 1.8 Consensus size: 101
17098152 ACCCGGTTCA
* * ** * *
17098162 CATAGTAGCCTGCATATAGTACTACACGTGTGACCATTTTCATCCGATACACGTAGCAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATACGACCA-TATCATCCGATACACATAGCAGCCTGCA
* *
17098227 CATAGTATTACACACGTGATCGAAGCTATGTGGTATG
65 CATAGTACTACACAAGTGATCGAAGCTATGTGGTATG
* *
17098264 CATAGTAGCCTGCACATAGTACTACACATACGACC-TATCATTCTGATACACATAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATACGACCATATCA-TCCGATACACATAGCAGCCTGCA
*
17098328 TATAGTACTACACAAGTGA
65 CATAGTACTACACAAGTGA
17098347 CCATTTTCAT
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
100 4 0.06
101 36 0.51
102 31 0.44
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATACGACCATATCATCCGATACACATAGCAGCCTGCAC
ATAGTACTACACAAGTGATCGAAGCTATGTGGTATG
Found at i:17098371 original size:101 final size:101
Alignment explanation
Indices: 17098266--17098494 Score: 275
Period size: 101 Copynumber: 2.3 Consensus size: 101
17098256 GTGGTATGCA
* ** * *
17098266 TAGTAGCCTGCACATAGTACTACACATACGA-CCTATC-ATTCTGATACACATAGTAGCCTGCAT
1 TAGTAGCCTGCACATAGTACTACACACACGATCAAAGCTATTC-GATACACATAGTAGCCTGCAC
** *
17098329 ATAGTACTACACAAGTGACCATTTTCA-TCCGATACACG
65 ATAGTACTACACAAGCAACC--TATCATTCCGATACACG
** * *
17098367 TAGTAGCCTGCACATAGTACTACACACGTGATCAAAGCTATTCGGTACGCATAGTAGCCTGCACA
1 TAGTAGCCTGCACATAGTACTACACACACGATCAAAGCTATTCGATACACATAGTAGCCTGCACA
* *
17098432 TAGTACTACACATGCAACCTATCATTCCGTTACACG
66 TAGTACTACACAAGCAACCTATCATTCCGATACACG
*
17098468 TAGTAGCCTACACATAGTACTACACAC
1 TAGTAGCCTGCACATAGTACTACACAC
17098495 GTGACCTAGC
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
100 4 0.04
101 64 0.58
102 38 0.35
103 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACATAGTACTACACACACGATCAAAGCTATTCGATACACATAGTAGCCTGCACA
TAGTACTACACAAGCAACCTATCATTCCGATACACG
Found at i:17098436 original size:152 final size:152
Alignment explanation
Indices: 17098160--17098500 Score: 540
Period size: 152 Copynumber: 2.2 Consensus size: 152
17098150 ATACCCGGTT
**
17098160 CACATAGTAGCCTGCATATAGTACTACACGTGTGACCATTTTCATCCGATACACGTAGCAGCCTG
1 CACATAGTAGCCTGCATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGCAGCCTG
* * *
17098225 CACATAGTATTACACACGTGATCGAAGCTATGTGGTATGCATAGTAGCCTGCACATAGTACTACA
66 CACATAGTACTACACACGTGATCAAAGCTATGTGGTACGCATAGTAGCCTGCACATAGTACTACA
* *
17098290 CATACGACCTATCATTCTGATA
131 CATACAACCTATCATTCCGATA
*
17098312 CACATAGTAGCCTGCATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGTAGCCTG
1 CACATAGTAGCCTGCATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGCAGCCTG
17098377 CACATAGTACTACACACGTGATCAAAGCTAT-TCGGTACGCATAGTAGCCTGCACATAGTACTAC
66 CACATAGTACTACACACGTGATCAAAGCTATGT-GGTACGCATAGTAGCCTGCACATAGTACTAC
* *
17098441 ACATGCAACCTATCATTCCGTTA
130 ACATACAACCTATCATTCCGATA
* * * *
17098464 CACGTAGTAGCCTACACATAGTACTACACACGTGACC
1 CACATAGTAGCCTGCATATAGTACTACACAAGTGACC
17098501 TAGCAACTTC
Statistics
Matches: 174, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
151 1 0.01
152 173 0.99
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (152 bp):
CACATAGTAGCCTGCATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGCAGCCTG
CACATAGTACTACACACGTGATCAAAGCTATGTGGTACGCATAGTAGCCTGCACATAGTACTACA
CATACAACCTATCATTCCGATA
Found at i:17098495 original size:101 final size:101
Alignment explanation
Indices: 17098314--17098498 Score: 282
Period size: 101 Copynumber: 1.8 Consensus size: 101
17098304 TTCTGATACA
* ** * *
17098314 CATAGTAGCCTGCATATAGTACTACACAAGTGACCATTTTCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACAAGCAACCA-TATCATCCGATACACGTAGTAGCCTACA
17098379 CATAGTACTACACACGTGATCAAAGCTATTCGGTACG
65 CATAGTACTACACACGTGATCAAAGCTATTCGGTACG
* *
17098416 CATAGTAGCCTGCACATAGTACTACACATGCAACC-TATCATTCCGTTACACGTAGTAGCCTACA
1 CATAGTAGCCTGCACATAGTACTACACAAGCAACCATATCA-TCCGATACACGTAGTAGCCTACA
17098480 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
17098499 CCTAGCAACT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 4 0.05
101 40 0.53
102 31 0.41
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACAAGCAACCATATCATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCAAAGCTATTCGGTACG
Found at i:17104037 original size:51 final size:51
Alignment explanation
Indices: 17103976--17104314 Score: 286
Period size: 51 Copynumber: 6.7 Consensus size: 51
17103966 ATACCTGATT
* *
17103976 CACATAGTAGCCTACACATAGTACTACACATGTGACCATTTTCATACGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATTCGATA
* ** * *** * *
17104027 CACGTAGTAGCCTGCACATAGTACTACACGCGTGATCGAAGCT-ATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGA-CCATTTTCATTCGATA
* * * *
17104078 CGCATAGTAGCCTGCACATAGTACTACAGATGCGA-C--TATCATTTCGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCA-TTCGATA
* *
17104127 CACATAGTAGCCTGTACATAGTACTAAACATGTGACCATTTTCA-TCTGATA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATTC-GATA
** * * *
17104178 CAC-GGGTAGCCTGCACATAGTACTACACACGTG---ATTTAAGCTATTCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTT--TC-ATTCGATA
* * * *
17104228 CGCATAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTCAGTTA
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATTC-GATA
* *
17104278 CACGTAGTAGCCTGCACATAGTACTACACACGTGACC
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACC
17104315 TAGCAACTTC
Statistics
Matches: 226, Mismatches: 46, Indels: 33
0.74 0.15 0.11
Matches are distributed among these distances:
47 5 0.02
48 1 0.00
49 40 0.18
50 71 0.31
51 101 0.45
52 8 0.04
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATTCGATA
Found at i:17104248 original size:150 final size:152
Alignment explanation
Indices: 17103976--17104314 Score: 524
Period size: 151 Copynumber: 2.2 Consensus size: 152
17103966 ATACCTGATT
*
17103976 CACATAGTAGCCTACACATAGTACTACACATGTGACCATTTTCATACGATACACGTAGTAGCCTG
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATACGATACACGTAGTAGCCTG
*
17104041 CACATAGTACTACACGCGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTACA
66 CACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTACA
*
17104106 GATGCGA-CTATCATTTC-GATA
131 CATGCGACCTATCA-TTCAGATA
* * *
17104127 CACATAGTAGCCTGTACATAGTACTAAACATGTGACCATTTTCAT-CTGATACACG-GGTAGCCT
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATAC-GATACACGTAGTAGCCT
** *
17104190 GCACATAGTACTACACACGTGATTTAAGCTATTCGGTACGCATAGTAGCCTGCACATAGTACTAC
65 GCACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTAC
*
17104255 ACATGCGACCTATCATTCAGTTA
130 ACATGCGACCTATCATTCAGATA
* *
17104278 CACGTAGTAGCCTGCACATAGTACTACACACGTGACC
1 CACATAGTAGCCTGCACATAGTACTACACATGTGACC
17104315 TAGCAACTTC
Statistics
Matches: 171, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
150 79 0.46
151 92 0.54
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (152 bp):
CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATACGATACACGTAGTAGCCTG
CACATAGTACTACACACGTGATCGAAGCTATCCGGTACGCATAGTAGCCTGCACATAGTACTACA
CATGCGACCTATCATTCAGATA
Found at i:17104259 original size:101 final size:101
Alignment explanation
Indices: 17104082--17104312 Score: 274
Period size: 101 Copynumber: 2.3 Consensus size: 101
17104072 CCGGTACGCA
* * * * * *
17104082 TAGTAGCCTGCACATAGTACTACAGATGCGA-CT-ATC-ATTTCGATACACATAGTAGCCTGTAC
1 TAGTAGCCTGCACATAGTACTACACACGTGATTTAAGCTA-TTCGATACACATAGTAGCCTGCAC
* * *
17104144 ATAGTACTAAACATGTGACCATTTTCA-TCTGATACACG
65 ATAGTACTAAACATGCGACC--TATCATTCAGATACACG
* * *
17104182 -GGTAGCCTGCACATAGTACTACACACGTGATTTAAGCTATTCGGTACGCATAGTAGCCTGCACA
1 TAGTAGCCTGCACATAGTACTACACACGTGATTTAAGCTATTCGATACACATAGTAGCCTGCACA
* *
17104246 TAGTACTACACATGCGACCTATCATTCAGTTACACG
66 TAGTACTAAACATGCGACCTATCATTCAGATACACG
17104282 TAGTAGCCTGCACATAGTACTACACACGTGA
1 TAGTAGCCTGCACATAGTACTACACACGTGA
17104313 CCTAGCAACT
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
99 30 0.27
100 10 0.09
101 70 0.63
102 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACATAGTACTACACACGTGATTTAAGCTATTCGATACACATAGTAGCCTGCACA
TAGTACTAAACATGCGACCTATCATTCAGATACACG
Found at i:17108090 original size:30 final size:30
Alignment explanation
Indices: 17108029--17108092 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
17108019 TGATGCCAGC
*
17108029 ATCGACAGTCATCAGCTTCTATAAGATGCA
1 ATCGACAGTCATCAGCTTCTATAAGACGCA
*
17108059 ATCGACAGTCATCGGCTTCTATCAA-ACGCA
1 ATCGACAGTCATCAGCTTCTAT-AAGACGCA
17108089 ATCG
1 ATCG
17108093 GAAGCCATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (30 bp):
ATCGACAGTCATCAGCTTCTATAAGACGCA
Found at i:17108102 original size:30 final size:30
Alignment explanation
Indices: 17108029--17108102 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
17108019 TGATGCCAGC
* * *
17108029 ATCGACAGTCATCAGCTTCTATAAGATGCA
1 ATCGACAGCCATCGGCTTCTATAAGACGCA
*
17108059 ATCGACAGTCATCGGCTTCTATCAA-ACGCA
1 ATCGACAGCCATCGGCTTCTAT-AAGACGCA
17108089 ATCGGA-AGCCATCG
1 ATC-GACAGCCATCG
17108103 TTTTCTGTCG
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
30 35 0.90
31 4 0.10
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (30 bp):
ATCGACAGCCATCGGCTTCTATAAGACGCA
Found at i:17112261 original size:25 final size:25
Alignment explanation
Indices: 17112227--17112323 Score: 115
Period size: 25 Copynumber: 3.8 Consensus size: 25
17112217 TCTTGTACAT
*
17112227 GTATGCTCACACGAGCTGTGAATCA
1 GTATGCTCACACGAGATGTGAATCA
*
17112252 GTATGCTCACACGAGCTGTGAAAAT-A
1 GTATGCTCACACGAGATGTG--AATCA
** *
17112278 GGCCTGCTCACACGAGATATGAATCA
1 -GTATGCTCACACGAGATGTGAATCA
17112304 GTATGCTCACACGAGATGTG
1 GTATGCTCACACGAGATGTG
17112324 GTTCAAAACG
Statistics
Matches: 61, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
25 40 0.66
26 2 0.03
27 19 0.31
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.23
Consensus pattern (25 bp):
GTATGCTCACACGAGATGTGAATCA
Found at i:17114519 original size:28 final size:28
Alignment explanation
Indices: 17114488--17114547 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
17114478 AAACCCACTA
* * *
17114488 GGATATTAAATATGGGTTAAGTCCGTTG
1 GGATAATAAACATGGGGTAAGTCCGTTG
17114516 GGATAATAAACATGGGGTAAGTCCGTTG
1 GGATAATAAACATGGGGTAAGTCCGTTG
17114544 GGAT
1 GGAT
17114548 GTGAGAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.08, G:0.32, T:0.30
Consensus pattern (28 bp):
GGATAATAAACATGGGGTAAGTCCGTTG
Found at i:17118090 original size:17 final size:17
Alignment explanation
Indices: 17118062--17118107 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
17118052 GTAAATATCG
17118062 TTTTTACATTTTA-TTTA
1 TTTTT-CATTTTACTTTA
17118079 TTTATTCATTTTACTTTA
1 TTT-TTCATTTTACTTTA
17118097 TTTTT-ATTTTA
1 TTTTTCATTTTA
17118108 ATTTGTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.22
17 12 0.44
18 9 0.33
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTCATTTTACTTTA
Found at i:17118116 original size:16 final size:16
Alignment explanation
Indices: 17118069--17118116 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
17118059 TCGTTTTTAC
17118069 ATTTT-ATTTATTTATT
1 ATTTTAATTTATTT-TT
*
17118085 CATTTTACTTTATTTTT
1 -ATTTTAATTTATTTTT
*
17118102 ATTTTAATTTGTTTT
1 ATTTTAATTTATTTT
17118117 GAAAATAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 13 0.48
17 7 0.26
18 7 0.26
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.73
Consensus pattern (16 bp):
ATTTTAATTTATTTTT
Found at i:17118951 original size:21 final size:21
Alignment explanation
Indices: 17118927--17118972 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
17118917 TCACATGGTT
* * *
17118927 ATGTATCTCTATCACACGGGC
1 ATGTATCTCCACCACACGGCC
*
17118948 ATGTGTCTCCACCACACGGCC
1 ATGTATCTCCACCACACGGCC
17118969 ATGT
1 ATGT
17118973 GCCGCATTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.26
Consensus pattern (21 bp):
ATGTATCTCCACCACACGGCC
Found at i:17124240 original size:95 final size:93
Alignment explanation
Indices: 17124053--17124673 Score: 992
Period size: 95 Copynumber: 6.5 Consensus size: 93
17124043 GAAATGATAG
17124053 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT-AGGCCTAATGGCCG
17124118 ATGTGATGAATGTGAAAGTGTATATATATGTGA
63 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
17124151 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGCCTAATGGCCGATG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATG
17124216 TGATGAATGTGAAAGTGTATATATATGTGA
66 TGATGAATGTGAAAGTG--TATATATGTGA
*
17124246 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGCCTAATGGCCGATG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATG
17124311 TGATGAATGTGAAAGTGTATATATATGTGA
66 TGATGAATGTGAAAGTG--TATATATGTGA
*
17124341 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAGGCCTAATGGCCGATG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATG
17124406 TGATGAATGTGAAAGTGTATATATGTGA
66 TGATGAATGTGAAAGTGTATATATGTGA
17124434 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGAT-AGGCCTAATGGC
*
17124499 CGATGTGATGAATGTGAAAGTGTATATACGTGA
61 CGATGTGATGAATGTGAAAGTGTATATATGTGA
17124532 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCCGAT
17124596 GTGATGAATGTGAAAGTGTATATATGTGA
65 GTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
17124625 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
17124674 AGTCCCGAAG
Statistics
Matches: 505, Mismatches: 12, Indels: 17
0.95 0.02 0.03
Matches are distributed among these distances:
93 105 0.21
94 39 0.08
95 224 0.44
96 11 0.02
97 45 0.09
98 81 0.16
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (93 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATG
TGATGAATGTGAAAGTGTATATATGTGA
Found at i:17124347 original size:144 final size:143
Alignment explanation
Indices: 17124053--17124675 Score: 1005
Period size: 144 Copynumber: 4.4 Consensus size: 143
17124043 GAAATGATAG
17124053 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
17124118 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
17124183 AGTGTATATACGTGA
129 AGTGTATATATGTGA
17124198 T-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
17124262 ATGTGATGAATGTGAAAGTGTATATACGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
17124326 TGTATATATATGTGA
131 TG--TATATATGTGA
*
17124341 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGAT-AGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
17124403 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
17124468 TGTATATATATATGTGA
131 TG----TATATATGTGA
*
17124485 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATACGTGAT-AGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
17124547 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
17124612 TGTATATATGTGA
131 TGTATATATGTGA
* * * * * * *
17124625 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
17124676 TCCCGAAGGG
Statistics
Matches: 457, Mismatches: 12, Indels: 22
0.93 0.02 0.04
Matches are distributed among these distances:
140 46 0.10
141 82 0.18
142 58 0.13
143 11 0.02
144 259 0.57
145 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGA
Found at i:17124478 original size:239 final size:237
Alignment explanation
Indices: 17124055--17124675 Score: 1086
Period size: 239 Copynumber: 2.6 Consensus size: 237
17124045 AATGATAGTA
17124055 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
17124120 GTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 GTGATGAATGTGAAAGTG--TATATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
17124185 TGTATATACGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
128 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
17124249 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGAT
193 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGAT
17124294 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
*
17124359 GTGATGAATGTGAAAGTGTATATACGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
66 GTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
17124424 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAG
131 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAG
17124489 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGAT
194 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGAT
17124533 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
1 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
* * * * * *
17124596 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
17124661 TATAAATGTGATAAG
130 TATATATGTGATAAG
17124676 TCCCGAAGGG
Statistics
Matches: 368, Mismatches: 10, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
236 45 0.12
237 103 0.28
238 42 0.11
239 178 0.48
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (237 bp):
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGAT
Found at i:17126775 original size:43 final size:43
Alignment explanation
Indices: 17126727--17126872 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
17126717 TTGGTTTTCA
17126727 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
17126770 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATCG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
17126813 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
17126856 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
17126873 TTGAAATGCA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.23, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:17126889 original size:29 final size:29
Alignment explanation
Indices: 17126854--17126927 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
17126844 GTTGTGAGAT
* *
17126854 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
17126883 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
17126912 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
17126928 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:17127420 original size:40 final size:40
Alignment explanation
Indices: 17127236--17127537 Score: 278
Period size: 40 Copynumber: 7.6 Consensus size: 40
17127226 TTGAATGATG
* *
17127236 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * *
17127276 TCCGGACTAAGAT-CCGAAG-GCATTTGTG-TGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * *
17127315 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* *
17127355 TCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * * *
17127395 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* **
17127435 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAGGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * * *
17127475 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
17127515 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
17127538 ATCATGCTGG
Statistics
Matches: 222, Mismatches: 32, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
39 33 0.15
40 169 0.76
41 20 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:17130973 original size:47 final size:47
Alignment explanation
Indices: 17130817--17131445 Score: 1042
Period size: 47 Copynumber: 13.1 Consensus size: 47
17130807 GAAATGATAG
17130817 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
17130866 TAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
17130915 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
17130962 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
17131013 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
17131060 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
17131109 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
17131156 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
17131203 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGA
17131254 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
17131301 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
17131348 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
17131395 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
17131442 TAAG
1 TAAG
17131446 TCCCGAAGGG
Statistics
Matches: 556, Mismatches: 14, Indels: 22
0.94 0.02 0.04
Matches are distributed among these distances:
47 333 0.60
49 130 0.23
51 93 0.17
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:17131004 original size:98 final size:94
Alignment explanation
Indices: 17130817--17131445 Score: 1042
Period size: 98 Copynumber: 6.5 Consensus size: 94
17130807 GAAATGATAG
17130817 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
17130882 ATGTGATGAATATGAAAGTGTATATATATGTGA
64 ATGTGATGAATGTGAAAGTG--TATATATGTGA
*
17130915 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
17130980 GTGATGAATGTGAAAGTGTATATATATATGTGA
66 GTGATGAATGTGAAAGTG----TATATATGTGA
17131013 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
17131078 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
17131109 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
17131174 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
17131203 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGC
17131268 CGATGTGATGAATGTGAAAGTGTATATATGTGA
62 CGATGTGATGAATGTGAAAGTGTATATATGTGA
17131301 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
17131366 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
17131395 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
17131446 TCCCGAAGGG
Statistics
Matches: 514, Mismatches: 11, Indels: 16
0.95 0.02 0.03
Matches are distributed among these distances:
94 148 0.29
96 141 0.27
98 225 0.44
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:17131080 original size:145 final size:144
Alignment explanation
Indices: 17130817--17131445 Score: 1049
Period size: 145 Copynumber: 4.4 Consensus size: 144
17130807 GAAATGATAG
17130817 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
17130882 ATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
66 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
17130947 AGTG-TATATACGTGA
129 AGTGATATATATGTGA
17130962 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGC
17131027 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
64 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
17131092 AGTGTATATATATGTGA
129 AGTG-ATATATATGTGA
17131109 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
17131172 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
17131237 TGTATATATATATGTGA
131 TG---ATATATATGTGA
17131254 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
17131317 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
17131382 TG-TATATATGTGA
131 TGATATATATGTGA
* * * * * * *
17131395 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
17131446 TCCCGAAGGG
Statistics
Matches: 467, Mismatches: 9, Indels: 20
0.94 0.02 0.04
Matches are distributed among these distances:
141 50 0.11
142 1 0.00
143 96 0.21
145 226 0.48
147 94 0.20
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (144 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGATATATATGTGA
Found at i:17131620 original size:37 final size:37
Alignment explanation
Indices: 17131564--17131642 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
17131554 CCGAGCTCTA
* * *
17131564 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
17131601 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
17131638 AAGAC
1 AAGAC
17131643 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:17146242 original size:30 final size:31
Alignment explanation
Indices: 17146208--17146275 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
17146198 TTGCCCAAGA
** * **
17146208 GTAAATACTCAAAATTTGAGGGATTAA-AGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
17146238 GTAAATACAAAAAATTTGAAGGACCAATAGT
1 GTAAATACAAAAAATTTGAAGGACCAATAGT
17146269 GTAAATA
1 GTAAATA
17146276 TTTTAAGTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.26
Consensus pattern (31 bp):
GTAAATACAAAAAATTTGAAGGACCAATAGT
Found at i:17150480 original size:17 final size:17
Alignment explanation
Indices: 17150458--17150503 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
17150448 AAAATTGGGT
17150458 TTAATTAATTAAGTAAA
1 TTAATTAATTAAGTAAA
*
17150475 TTAATTATTTAAGTAAA
1 TTAATTAATTAAGTAAA
*
17150492 TTGATTAATTAA
1 TTAATTAATTAA
17150504 AGTTGTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.46
Consensus pattern (17 bp):
TTAATTAATTAAGTAAA
Found at i:17152347 original size:17 final size:18
Alignment explanation
Indices: 17152319--17152353 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
17152309 TGCTCGGCCC
17152319 ATTAATAAAATAAACCAA
1 ATTAATAAAATAAACCAA
*
17152337 ATTAA-AAAATAATCCAA
1 ATTAATAAAATAAACCAA
17152354 TAGCAGTCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (18 bp):
ATTAATAAAATAAACCAA
Found at i:17160492 original size:87 final size:87
Alignment explanation
Indices: 17160346--17160868 Score: 796
Period size: 87 Copynumber: 6.0 Consensus size: 87
17160336 ATGAAGATAA
* * * *
17160346 AAAATAAAGCCTTGCCTCCATCAGTTACAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
*
17160411 GTGTTAACAGCGAAGCAGATCG
66 GCGTTAACAGCGAAGCAGATCG
* * *
17160433 AAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
* *
17160498 GCGTTAACAGCGAAGCCGATCA
66 GCGTTAACAGCGAAGCAGATCG
* * * * *
17160520 AAAATAAAGCCTTGCCTCCTTCGGTTGCAGTGGAGCTAGTTGAGGATAGCAGATCTTGCCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
*
17160585 GCGTTAACAGCGAAGCAGATCA
66 GCGTTAACAGCGAAGCAGATCG
*
17160607 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCTT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
*
17160672 GTGTTAACAGCGAAGCAGATCG
66 GCGTTAACAGCGAAGCAGATCG
* *
17160694 AAAGCAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTACCTTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
17160759 GCGTTAACAGCGAAGCAGATCG
66 GCGTTAACAGCGAAGCAGATCG
* * * *
17160781 AAAACAAAGCCTTACCTCCATCGGTTG-AGTGGAGCTGGTTAAAGATAGAAGATCTTACCCTCCT
1 AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
** *
17160845 GCGTCGACAGTGAAGCAGATCG
66 GCGTTAACAGCGAAGCAGATCG
17160867 AA
1 AA
17160869 GATTACAAGT
Statistics
Matches: 406, Mismatches: 30, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
86 56 0.14
87 350 0.86
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (87 bp):
AAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCT
GCGTTAACAGCGAAGCAGATCG
Found at i:17161116 original size:44 final size:44
Alignment explanation
Indices: 17161005--17161118 Score: 131
Period size: 44 Copynumber: 2.6 Consensus size: 44
17160995 TCGCATCGGG
* *
17161005 TCTTATCTCCCTGAAGTTACAGTAGAGCAGACTGAGAAAACAAG
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAGAAAACAAA
* * * * *
17161049 TCTTATCCCCCTGAAGTCACAGTGGGGTAGACTGA-AGAAGCAAA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAGA-AAACAAA
* *
17161093 TCTTATCTCCCTGAGGTTGCAGTGGA
1 TCTTATCTCCCTGAAGTTACAGTGGA
17161119 ATATATTGAA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 1 0.02
44 56 0.98
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAGAAAACAAA
Found at i:17162133 original size:21 final size:22
Alignment explanation
Indices: 17162107--17162148 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
17162097 TGAGGGCTAG
*
17162107 GGTTTCTTTTAGTT-TTTTTTA
1 GGTTTCATTTAGTTATTTTTTA
*
17162128 GGTTTCATTTATTTATTTTTT
1 GGTTTCATTTAGTTATTTTTT
17162149 TTAGTTCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.12, C:0.05, G:0.12, T:0.71
Consensus pattern (22 bp):
GGTTTCATTTAGTTATTTTTTA
Found at i:17164975 original size:104 final size:102
Alignment explanation
Indices: 17164835--17165032 Score: 324
Period size: 104 Copynumber: 1.9 Consensus size: 102
17164825 GAATACGAAG
* * *
17164835 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTTCTAAGTGCTGATTCCACCGTATCCT
1 GGGGTTGCTAAGTGATGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTAT-CT
*
17164900 TGAATATAAAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
65 TAAATATAAAA-GGGGTTGCTAAGTGCTGATTCCCCCAA
17164939 GGGGTTGCTAAGTGATGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTT
1 GGGGTTGCTAAGTGATGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTT
* *
17165004 AAATGTGAAAGGGGTTGCTAAGTGCTGAT
66 AAATATAAAAGGGGTTGCTAAGTGCTGAT
17165033 CCCACCGTAT
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
102 19 0.22
103 10 0.11
104 59 0.67
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (102 bp):
GGGGTTGCTAAGTGATGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCTT
AAATATAAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:17165033 original size:42 final size:41
Alignment explanation
Indices: 17164974--17165148 Score: 222
Period size: 42 Copynumber: 4.4 Consensus size: 41
17164964 ACTCATTGGT
17164974 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG-AAGG
17165016 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTG-AAGG
* * * * *
17165058 GGTTGCTAAGTGCTGATTCC-CTG-A-ATT--A-CTG--GT
1 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAGG
*
17165091 GGTTGCTAAGTGCTGATCCCACCATATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAGG
17165132 GGTTGCTAAGTGCTGAT
1 GGTTGCTAAGTGCTGAT
17165149 TCCCCGAATC
Statistics
Matches: 114, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
33 20 0.18
34 1 0.01
35 1 0.01
36 4 0.04
37 1 0.01
38 1 0.01
39 4 0.04
40 1 0.01
41 20 0.18
42 61 0.54
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAGG
Found at i:17165100 original size:33 final size:33
Alignment explanation
Indices: 17165058--17165180 Score: 104
Period size: 33 Copynumber: 3.5 Consensus size: 33
17165048 ATGTGAAAGG
17165058 GGTTGCTAAGTGCTGATTCCCTGAATTACTGGT
1 GGTTGCTAAGTGCTGATTCCCTGAATTACTGGT
* * * *
17165091 GGTTGCTAAGTGCTGATCCCACCAT-ATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGAT-TC-CC-TGA-ATT--A-CTG--GT
* *
17165132 GGTTGCTAAGTGCTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCTGAATTACTGGT
17165165 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
17165181 ATCCACCGAT
Statistics
Matches: 70, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
33 34 0.49
34 1 0.01
35 5 0.07
36 4 0.06
38 2 0.03
39 5 0.07
40 1 0.01
41 18 0.26
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.32
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCTGAATTACTGGT
Found at i:17165187 original size:74 final size:75
Alignment explanation
Indices: 17165016--17165180 Score: 296
Period size: 74 Copynumber: 2.2 Consensus size: 75
17165006 ATGTGAAAGG
* *
17165016 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCTG
1 GGTTGCTAAGTGCTGATCCCACCATATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
*
17165081 AATTACTGGT
66 AATCACTGGT
17165091 GGTTGCTAAGTGCTGATCCCACCATATCTTAAATGTG-AAGGGGTTGCTAAGTGCTGATTCCCCG
1 GGTTGCTAAGTGCTGATCCCACCATATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
17165155 AATCACTGGT
66 AATCACTGGT
17165165 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
17165181 ATCCACCGAT
Statistics
Matches: 87, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
74 51 0.59
75 36 0.41
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (75 bp):
GGTTGCTAAGTGCTGATCCCACCATATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
AATCACTGGT
Found at i:17171370 original size:33 final size:33
Alignment explanation
Indices: 17171328--17171638 Score: 123
Period size: 33 Copynumber: 8.7 Consensus size: 33
17171318 ATATGAAGGG
17171328 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
17171361 GGTTGCTAAGTGCTGATTCCACCGTATCCTTGAATATAAAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--C-T-CAT-T----GGT
* *
17171405 GGTTGCTAAGTGCTAATT-CCC--C-CA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
**
17171432 GGTTGCTAAGTATTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* *
17171465 GGTTGCTAAGTGCTGATCCCACCGTATCTTAAATGTGAAAAG-
1 GGTTGCTAAGTGCTGATTCC-CCG-A-C-T-CAT-TG----GT
* * * *
17171507 GGTTGCTAAATGCTGATGCCCCGAATTATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
* * * *
17171540 GGTTGCTAAGTGCTGATCCCACCATATCTTAAATGTGAAGG
1 GGTTGCTAAGTGCTGATTCC-CC-GA-C-T-CAT-TG--GT
* * *
17171581 GGTTGCTAAGTGTTGATTCCCCGAATCACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
*
17171614 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
17171639 TAAAGGATAA
Statistics
Matches: 209, Mismatches: 32, Indels: 73
0.67 0.10 0.23
Matches are distributed among these distances:
27 15 0.07
28 5 0.02
30 1 0.00
31 2 0.01
32 3 0.01
33 74 0.35
34 13 0.06
35 5 0.02
36 4 0.02
37 7 0.03
38 6 0.03
39 7 0.03
40 4 0.02
41 22 0.11
42 20 0.10
43 2 0.01
44 19 0.09
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
Found at i:17171506 original size:104 final size:102
Alignment explanation
Indices: 17171326--17171520 Score: 302
Period size: 104 Copynumber: 1.9 Consensus size: 102
17171316 GAATATGAAG
* *
17171326 GGGGTTGCTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCCT
1 GGGGTTGCTAAGTACTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCCT
* *
17171391 TGAATATAAAAGGGGGTTGCTAAGTGCTAATTCCCCCAA
66 TAAATATAAAA--GGGTTGCTAAATGCTAATTCCCCCAA
*
17171430 GGGGTTGCTAAGTATTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTAT-CT
1 GGGGTTGCTAAGTACTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCCT
*
17171494 TAAATGTGAAAAGGGTTGCTAAATGCT
66 TAAATAT-AAAAGGGTTGCTAAATGCT
17171521 GATGCCCCGA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
102 14 0.17
103 7 0.08
104 63 0.75
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.31
Consensus pattern (102 bp):
GGGGTTGCTAAGTACTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATCCT
TAAATATAAAAGGGTTGCTAAATGCTAATTCCCCCAA
Found at i:17171636 original size:74 final size:75
Alignment explanation
Indices: 17171428--17171629 Score: 316
Period size: 75 Copynumber: 2.7 Consensus size: 75
17171418 TAATTCCCCC
* * *
17171428 AAGGGGTTGCTAAGTATTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATCCCACCGTATC
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCATATC
17171493 TTAAATGTGA
66 TTAAATGTGA
* * * * *
17171503 AAAGGGTTGCTAAATGCTGATGCCCCGAATTATTGGTGGTTGCTAAGTGCTGATCCCACCATATC
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCATATC
17171568 TTAAATGTG-
66 TTAAATGTGA
*
17171577 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGA
1 AAGGGGTTGCTAAGTGTTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGA
17171630 ATCCACCGAT
Statistics
Matches: 113, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 47 0.42
75 66 0.58
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGTTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATCCCACCATATC
TTAAATGTGA
Found at i:17185096 original size:7 final size:7
Alignment explanation
Indices: 17185082--17185112 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
17185072 GATGAATGAG
17185082 TGAGGGA
1 TGAGGGA
*
17185089 TGAAGGA
1 TGAGGGA
17185096 TGAGGGA
1 TGAGGGA
17185103 TGAGGGA
1 TGAGGGA
17185110 TGA
1 TGA
17185113 TTGAAAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.52, T:0.16
Consensus pattern (7 bp):
TGAGGGA
Found at i:17185101 original size:14 final size:14
Alignment explanation
Indices: 17185072--17185112 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
17185062 AAGAGAGAAT
*
17185072 GATGAATGAGTGAGG
1 GATGAAGGA-TGAGG
17185087 GATGAAGGATGAGG
1 GATGAAGGATGAGG
*
17185101 GATGAGGGATGA
1 GATGAAGGATGA
17185113 TTGAAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 16 0.67
15 8 0.33
ACGTcount: A:0.34, C:0.00, G:0.49, T:0.17
Consensus pattern (14 bp):
GATGAAGGATGAGG
Found at i:17187065 original size:6 final size:6
Alignment explanation
Indices: 17187054--17187088 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
17187044 TAGATCTATT
*
17187054 TCTACA TTTACA TCTACA TCTACA TCTACA TCTAC
1 TCTACA TCTACA TCTACA TCTACA TCTACA TCTAC
17187089 TACATCAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37
Consensus pattern (6 bp):
TCTACA
Found at i:17193547 original size:22 final size:22
Alignment explanation
Indices: 17193499--17193568 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
17193489 AAAGCTGCCA
* * *
17193499 ATAACCAGAATGGCTAAGAGCC
1 ATAAACAGAATAGCTAAAAGCC
* * * *
17193521 GTAAACAGGATAGCTATAAGCT
1 ATAAACAGAATAGCTAAAAGCC
*
17193543 ATAAACAGAATGGCTAAAAGCC
1 ATAAACAGAATAGCTAAAAGCC
17193565 ATAA
1 ATAA
17193569 GTACAGTAAT
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (22 bp):
ATAAACAGAATAGCTAAAAGCC
Found at i:17193614 original size:32 final size:32
Alignment explanation
Indices: 17193559--17193759 Score: 226
Period size: 32 Copynumber: 6.3 Consensus size: 32
17193549 AGAATGGCTA
* * *
17193559 AAAGCCATAAGT-ACAGTAATATGATTGGCAC
1 AAAGCCATCAGTAATAGTAATATGATCGGCAC
* * * *
17193590 AAAGCCATCAATAGTAATAATATGACCGGCAC
1 AAAGCCATCAGTAATAGTAATATGATCGGCAC
* *
17193622 ACAGCCATCAGTAATAGTAGTATGATCGGCAC
1 AAAGCCATCAGTAATAGTAATATGATCGGCAC
* *
17193654 AAAGCCATCAGTAGTAGTAATATGATCGACAC
1 AAAGCCATCAGTAATAGTAATATGATCGGCAC
* *
17193686 ACAGCCATCAGTAATGGTAATATGA-CTGGCAC
1 AAAGCCATCAGTAATAGTAATATGATC-GGCAC
* * * *
17193718 ACATCCATCAGTAATGGTAATATGATCGACAC
1 AAAGCCATCAGTAATAGTAATATGATCGGCAC
17193750 AAAGCCATCA
1 AAAGCCATCA
17193760 ATAGCATCGC
Statistics
Matches: 142, Mismatches: 25, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
31 11 0.08
32 130 0.92
33 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (32 bp):
AAAGCCATCAGTAATAGTAATATGATCGGCAC
Found at i:17193661 original size:64 final size:64
Alignment explanation
Indices: 17193573--17193759 Score: 250
Period size: 64 Copynumber: 2.9 Consensus size: 64
17193563 CCATAAGTAC
* * * * *
17193573 AGTAATATGATTGGCACAAAGCCATCAATAGTAATAATATGACCGGCACACAGCCATCAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAAT
*
17193637 AGTAGTATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAAT
1 AGTAATATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAAT
* * * * * *
17193701 GGTAATATGA-CTGGCACACATCCATCAGTAATGGTAATATGATCGACACAAAGCCATCA
1 AGTAATATGATC-GGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCA
17193760 ATAGCATCGC
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
63 1 0.01
64 108 0.99
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.22
Consensus pattern (64 bp):
AGTAATATGATCGGCACAAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAAT
Found at i:17193694 original size:96 final size:95
Alignment explanation
Indices: 17193559--17193759 Score: 267
Period size: 96 Copynumber: 2.1 Consensus size: 95
17193549 AGAATGGCTA
* * * *
17193559 AAAGCCATAAGTACAGTAATATGATTGGCACAAAGCCATCAATAGTAATAATATGACCGGCACAC
1 AAAGCCATCAGTACAGTAATATGATCGACACAAAGCCATCAATAATAATAATATGACCGGCACAC
* *
17193624 AGCCATCAGTAATAGTAGTATGATCGGCAC
66 AGCCATCAGTAATAGTAATATGATCGACAC
* * * ** *
17193654 AAAGCCATCAGTAGTAGTAATATGATCGACACACAGCCATCAGTAATGGTAATATGACTGGCACA
1 AAAGCCATCAGTA-CAGTAATATGATCGACACAAAGCCATCAATAATAATAATATGACCGGCACA
* *
17193719 CATCCATCAGTAATGGTAATATGATCGACAC
65 CAGCCATCAGTAATAGTAATATGATCGACAC
17193750 AAAGCCATCA
1 AAAGCCATCA
17193760 ATAGCATCGC
Statistics
Matches: 91, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
95 12 0.13
96 79 0.87
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (95 bp):
AAAGCCATCAGTACAGTAATATGATCGACACAAAGCCATCAATAATAATAATATGACCGGCACAC
AGCCATCAGTAATAGTAATATGATCGACAC
Found at i:17193817 original size:26 final size:26
Alignment explanation
Indices: 17193753--17193818 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
17193743 TCGACACAAA
* *
17193753 GCCATCAATAGCATCGCAGCAAAGCT
1 GCCAACAATAGTATCGCAGCAAAGCT
* *
17193779 GCCAGCAACAGTATCGCAGCAAAGCT
1 GCCAACAATAGTATCGCAGCAAAGCT
*
17193805 GCCAATAATAGTAT
1 GCCAACAATAGTAT
17193819 ATGTAGCCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.17
Consensus pattern (26 bp):
GCCAACAATAGTATCGCAGCAAAGCT
Found at i:17194009 original size:24 final size:24
Alignment explanation
Indices: 17193934--17194017 Score: 80
Period size: 24 Copynumber: 3.5 Consensus size: 24
17193924 CCATGCACGG
** * *
17193934 AATCAATCATACAAATCACAGACA
1 AATCAATCATTTACATCACAGGCA
* * *
17193958 AATCAGTCATTTACATC-CCGGACG
1 AATCAATCATTTACATCACAGG-CA
*
17193982 AATCATTCATTTACATCACAGGCA
1 AATCAATCATTTACATCACAGGCA
17194006 AATCAATCATTT
1 AATCAATCATTT
17194018 CACCCCGAGG
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
23 2 0.04
24 42 0.89
25 3 0.06
ACGTcount: A:0.40, C:0.25, G:0.08, T:0.26
Consensus pattern (24 bp):
AATCAATCATTTACATCACAGGCA
Found at i:17194055 original size:27 final size:27
Alignment explanation
Indices: 17194025--17194211 Score: 146
Period size: 27 Copynumber: 6.9 Consensus size: 27
17194015 TTTCACCCCG
* *
17194025 AGGGGAAAAATAGTCATTTTACCCTAC
1 AGGGGAATAACAGTCATTTTACCCTAC
*
17194052 AGGGGAATTACAGTCATTTTACCCTAC
1 AGGGGAATAACAGTCATTTTACCCTAC
* *
17194079 AGGGGAATGACAGTCATTTTACCCTAT
1 AGGGGAATAACAGTCATTTTACCCTAC
* * *
17194106 AGGGGCATTAA-GGTTATTTTACCCTAC
1 AGGGG-AATAACAGTCATTTTACCCTAC
* * * * * *
17194133 AAGGGAGTTAC-GATCATTTAACCATAT
1 AGGGGAATAACAG-TCATTTTACCCTAC
* * *
17194160 AGGGGCATTACAGTCATTTTACCCATAG
1 AGGGGAATAACAGTCATTTTACCC-TAC
* * *
17194188 AGGGTACT-TCAGTCATTTTACCCT
1 AGGGGAATAACAGTCATTTTACCCT
17194212 TCAGAGGTAT
Statistics
Matches: 128, Mismatches: 27, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
26 5 0.04
27 112 0.88
28 11 0.09
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (27 bp):
AGGGGAATAACAGTCATTTTACCCTAC
Found at i:17194083 original size:54 final size:54
Alignment explanation
Indices: 17194025--17194183 Score: 180
Period size: 54 Copynumber: 2.9 Consensus size: 54
17194015 TTTCACCCCG
* * *
17194025 AGGGGAAAAATAGTCATTTTACCCTACAGGGGAATTACAGTCATTTTACCCTAC
1 AGGGGAAAGATAGTCATTTTACCCTATAGGGGCATTACAGTCATTTTACCCTAC
* * *
17194079 AGGGGAATGACAGTCATTTTACCCTATAGGGGCATTA-AGGTTATTTTACCCTAC
1 AGGGGAAAGATAGTCATTTTACCCTATAGGGGCATTACA-GTCATTTTACCCTAC
* * * *
17194133 AAGGG--AGTTACGATCATTTAACCATATAGGGGCATTACAGTCATTTTACCC
1 AGGGGAAAGATA-G-TCATTTTACCCTATAGGGGCATTACAGTCATTTTACCC
17194184 ATAGAGGGTA
Statistics
Matches: 88, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 2 0.02
54 83 0.94
55 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (54 bp):
AGGGGAAAGATAGTCATTTTACCCTATAGGGGCATTACAGTCATTTTACCCTAC
Found at i:17194204 original size:54 final size:52
Alignment explanation
Indices: 17194036--17194211 Score: 176
Period size: 54 Copynumber: 3.3 Consensus size: 52
17194026 GGGGAAAAAT
* * * *
17194036 AGTCATTTTACCCTACAGGGGAATTACAGTCATTTTACCCTACAGGGGAATGAC
1 AGTCATTTTACCCTATAGGGGCATTACAGTCATTTTACCCTA-AAGGGAAT-TC
* *
17194090 AGTCATTTTACCCTATAGGGGCATTA-AGGTTATTTTACCCTACAAGGGAGTT-
1 AGTCATTTTACCCTATAGGGGCATTACA-GTCATTTTACCCTA-AAGGGAATTC
* * * *
17194142 ACGATCATTTAACCATATAGGGGCATTACAGTCATTTTACCCATAGAGGGTACTTC
1 A-G-TCATTTTACCCTATAGGGGCATTACAGTCATTTTACCC-TAAAGGG-AATTC
17194198 AGTCATTTTACCCT
1 AGTCATTTTACCCT
17194212 TCAGAGGTAT
Statistics
Matches: 102, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
52 1 0.01
53 2 0.02
54 91 0.89
55 7 0.07
56 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (52 bp):
AGTCATTTTACCCTATAGGGGCATTACAGTCATTTTACCCTAAAGGGAATTC
Found at i:17194206 original size:81 final size:80
Alignment explanation
Indices: 17194036--17194211 Score: 212
Period size: 81 Copynumber: 2.2 Consensus size: 80
17194026 GGGGAAAAAT
* * *
17194036 AGTCATTTTACCCTACAGGGGAATTACAGTCATTTTACCCTACAGGGGAATGACAGTCATTTTAC
1 AGTCATTTTACCCTACAAGGGAATTACAGTCATTTAACCATACAGGGGAATGACAGTCATTTTAC
17194101 CCTATAGGGGCATTA
66 CCTATAGGGGCATTA
* * * * *
17194116 AGGTTATTTTACCCTACAAGGGAGTTAC-GATCATTTAACCATATAGGGGCATTACAGTCATTTT
1 A-GTCATTTTACCCTACAAGGGAATTACAG-TCATTTAACCATACAGGGGAATGACAGTCATTTT
* *
17194180 ACCC-ATAGAGGGTACTTC
64 ACCCTATAG-GGGCA-TTA
17194198 AGTCATTTTACCCT
1 AGTCATTTTACCCT
17194212 TCAGAGGTAT
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
80 6 0.07
81 72 0.89
82 3 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (80 bp):
AGTCATTTTACCCTACAAGGGAATTACAGTCATTTAACCATACAGGGGAATGACAGTCATTTTAC
CCTATAGGGGCATTA
Found at i:17194220 original size:27 final size:27
Alignment explanation
Indices: 17194170--17194413 Score: 235
Period size: 27 Copynumber: 9.0 Consensus size: 27
17194160 AGGGGCATTA
* * * *
17194170 CAGTCATTTTACCCATAGAGGGTACTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
*
17194197 CAGTCATTTTACCCTTC-AGAGGTATTT
1 CAGTAATTTTACCCTTCGAG-GGTATTT
*
17194224 C-GATAATTTTACCCTTCGGGGGTATTT
1 CAG-TAATTTTACCCTTCGAGGGTATTT
* *
17194251 C-GATCATTTTATCCTTCGAGGGTATTT
1 CAG-TAATTTTACCCTTCGAGGGTATTT
* *
17194278 TAGTAATTTTACCCTTCAAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
* *
17194305 CAGTAATTTTTCCCTTCGATGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
* * **
17194332 TAGTAAATTTACCCTTCGAGGGTAACT
1 CAGTAATTTTACCCTTCGAGGGTATTT
* * *
17194359 CAATAATATTACCCTTCAAGGGTATTT
1 CAGTAATTTTACCCTTCGAGGGTATTT
* *
17194386 C-GATAATTTTACCCTTCGGGGGCATTT
1 CAG-TAATTTTACCCTTCGAGGGTATTT
17194413 C
1 C
17194414 GGTCCAAATA
Statistics
Matches: 178, Mismatches: 34, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
26 3 0.02
27 173 0.97
28 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (27 bp):
CAGTAATTTTACCCTTCGAGGGTATTT
Found at i:17194258 original size:81 final size:82
Alignment explanation
Indices: 17194171--17194414 Score: 291
Period size: 81 Copynumber: 3.0 Consensus size: 82
17194161 GGGGCATTAC
* * *
17194171 AGTCATTTTACCCATAGAGGGTACTTCAGTCATTTTACCCTTC-AGAGGTATTTCGATAATTTTA
1 AGTCATTTTACCCTTCGAGGGTACTTCAGTAATTTTACCCTTCAAG-GGTATTTCGATAATTTTA
17194235 CCCTTCGGGGGTATTTCG
65 CCCTTCGGGGGTATTTCG
* * * *
17194253 A-TCATTTTATCCTTCGAGGGTATTTTAGTAATTTTACCCTTCAAGGGTATTTC-AGTAATTTTT
1 AGTCATTTTACCCTTCGAGGGTACTTCAGTAATTTTACCCTTCAAGGGTATTTCGA-TAATTTTA
** *
17194316 CCCTTCGATGGTATTT-T
65 CCCTTCGGGGGTATTTCG
* * * *
17194333 AGTAAATTTACCCTTCGAGGGTAAC-TCAATAATATTACCCTTCAAGGGTATTTCGATAATTTTA
1 AGTCATTTTACCCTTCGAGGGT-ACTTCAGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTA
*
17194397 CCCTTCGGGGGCATTTCG
65 CCCTTCGGGGGTATTTCG
17194415 GTCCAAATAT
Statistics
Matches: 134, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
80 2 0.01
81 127 0.95
82 5 0.04
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (82 bp):
AGTCATTTTACCCTTCGAGGGTACTTCAGTAATTTTACCCTTCAAGGGTATTTCGATAATTTTAC
CCTTCGGGGGTATTTCG
Found at i:17198394 original size:20 final size:20
Alignment explanation
Indices: 17198369--17198428 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
17198359 TAGCGCAAAT
17198369 ATAGAGGCACCAAAGTGCAA
1 ATAGAGGCACCAAAGTGCAA
*
17198389 ATAGAGGCACTGAAA-TGCAA
1 ATAGAGGCAC-CAAAGTGCAA
* *
17198409 ACAAAGGCACCAAAGTGCAA
1 ATAGAGGCACCAAAGTGCAA
17198429 TCCCGTACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.09
20 28 0.82
21 3 0.09
ACGTcount: A:0.47, C:0.20, G:0.23, T:0.10
Consensus pattern (20 bp):
ATAGAGGCACCAAAGTGCAA
Found at i:17201916 original size:51 final size:51
Alignment explanation
Indices: 17201856--17202245 Score: 339
Period size: 51 Copynumber: 7.7 Consensus size: 51
17201846 CGATGAACAG
*
17201856 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCAATAAATACTTGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAATACTTGTCAC
* * * * * * * *
17201907 ATGTCTAGTACTAAGTGAAGGCTACAATGTGTACCAA-GAA-GCTTTGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAATAC-TT-GTCAC
* * * *
17201958 GTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGA-TGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAAT-ACTTGTCAC
* * * * * *
17202009 ATGTGTAGTGCTAAGTGAAGGCTACTATGTGTATCGAA-AAGT-TTTGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-AATAAATACTT-GTCAC
* ** *
17202060 GTGTGTAGTACTATGTGAAGGCTACTACGTG-AACCGTAAAAACTTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAATACTTG-TCAC
* ** * *
17202111 GTGTGTAGTACTATGTGAAGGCTACTACGTG-AACTGTAAAAACCTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAATACTTG-TCAC
* * **
17202162 GTGTGTAGTACTATGTGAAGGCTATTACGTG-AACCGTAAA-ACTTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAATACTTG-TCAC
* *
17202212 GTGTGTAGTATTATGTGGAGGCTACTACGTGTAT
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTAT
17202246 TGAACGATAA
Statistics
Matches: 278, Mismatches: 49, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
49 1 0.00
50 47 0.17
51 226 0.81
52 4 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.31
Consensus pattern (51 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCAATAAATACTTGTCAC
Found at i:17202032 original size:102 final size:101
Alignment explanation
Indices: 17201856--17202244 Score: 419
Period size: 102 Copynumber: 3.8 Consensus size: 101
17201846 CGATGAACAG
* * * * *
17201856 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCAATAAATACTTGTCACATGTCTAGTACTAA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATACTGGTCACATGTGTAGTACTAA
*
17201921 GTGAAGGCTACAATGTGTACCAAGAAGCTTTGGTCAC
66 GTGAAGGCTACTATGTGTACCAA-AAGCTTTGGTCAC
* *
17201958 GTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGA-TGGTCACATGTGTAGTGCTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAAT-ACTGGTCACATGTGTAGTACTA
* *
17202022 AGTGAAGGCTACTATGTGTATCGAAAAGTTTTGGTCAC
65 AGTGAAGGCTACTATGTGTA-CCAAAAGCTTTGGTCAC
* * * *
17202060 GTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAAACTTGATCACGTGTGTAGTACTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAC-TGGTCACATGTGTAGTACTA
* * * * * * *
17202124 TGTGAAGGCTACTACGTGAACTGTAAAAAC-CTGATCAC
65 AGTGAAGGCTACTATGTGTAC--CAAAAGCTTTGGTCAC
* * * * *
17202162 GTGTGTAGTACTATGTGAAGGCTATTACGTGAACCG-TAAA-ACTTGATCACGTGTGTAGTATTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATAC-TGGTCACATGTGTAGTACTA
* * *
17202225 TGTGGAGGCTACTACGTGTA
65 AGTGAAGGCTACTATGTGTA
17202245 TTGAACGATA
Statistics
Matches: 255, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
100 1 0.00
101 45 0.18
102 201 0.79
103 8 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATACTGGTCACATGTGTAGTACTAA
GTGAAGGCTACTATGTGTACCAAAAGCTTTGGTCAC
Found at i:17202112 original size:153 final size:151
Alignment explanation
Indices: 17201857--17202242 Score: 415
Period size: 153 Copynumber: 2.5 Consensus size: 151
17201847 GATGAACAGG
** * * * *
17201857 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCAATAAATACTT-GTCACATGTCTAGTACTAA
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGA-AAAT-CTTGGTCACGTGTGTAGTACTAT
* * * * * *
17201921 GTGAAGGCTACAATGTGTACCAAGAAGCTTTGGTCACGTGTGTAGTACTGTGTGAAGGCTACTAC
64 GTGAAGGCTACTACGTGAACCAAGAAACTTTGATCACGTGTGTAGTACTATGTGAAGGCTACTAC
* *
17201986 GTGAA-TCGATAAATGA-TGGTCACA
129 GTGAACT-G-TAAA-AACTGATCACA
* * *
17202010 TGTGTAGTGCTAAGTGAAGGCTACTATGTGTATCGAAAAGTTTTGGTCACGTGTGTAGTACTATG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGAAAA-TCTTGGTCACGTGTGTAGTACTATG
17202075 TGAAGGCTACTACGTGAACCGTAA-AAAC-TTGATCACGTGTGTAGTACTATGTGAAGGCTACTA
65 TGAAGGCTACTACGTGAACC--AAGAAACTTTGATCACGTGTGTAGTACTATGTGAAGGCTACTA
*
17202138 CGTGAACTGTAAAAACCTGATCACG
128 CGTGAACTGTAAAAA-CTGATCACA
* * * * * *
17202163 TGTGTAGTACTATGTGAAGGCTATTACGTGAACCGTAAAA-CTTGATCACGTGTGTAGTATTATG
1 TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCG-AAAATCTTGGTCACGTGTGTAGTACTATG
*
17202227 TGGAGGCTACTACGTG
65 TGAAGGCTACTACGTG
17202243 TATTGAACGA
Statistics
Matches: 197, Mismatches: 28, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
151 1 0.01
152 45 0.23
153 141 0.72
154 8 0.04
155 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGAAGGCTACTACGTGTATCGAAAATCTTGGTCACGTGTGTAGTACTATGT
GAAGGCTACTACGTGAACCAAGAAACTTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGT
GAACTGTAAAAACTGATCACA
Found at i:17202271 original size:101 final size:102
Alignment explanation
Indices: 17202064--17202281 Score: 282
Period size: 101 Copynumber: 2.1 Consensus size: 102
17202054 GGTCACGTGT
17202064 GTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAACTTGATCACGTGTGTAGTACTATGTGA
1 GTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAACTTGATCACGTGTGTAGTACTATGTGA
** * * *
17202129 AGGCTACTACGTGAACTGTAAAAACCTGATCACGTGT
66 AGGCTACTACGTGAACTGTAAAAACAAGATAACATGG
* * *
17202166 GTAGTACTATGTGAAGGCTATTACGTGAACCGT-AAAACTTGATCACGTGTGTAGTATTATGTGG
1 GTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAACTTGATCACGTGTGTAGTACTATGTGA
* *
17202230 AGGCTACTACGTGTATTG-AACGATAA-AAG-TAACATGG
66 AGGCTACTACGTGAACTGTAA--A-AACAAGATAACATGG
*
17202267 GTAGTACTGTGTGAA
1 GTAGTACTATGTGAA
17202282 AAACTTTTAT
Statistics
Matches: 102, Mismatches: 11, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
100 2 0.02
101 64 0.63
102 34 0.33
103 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (102 bp):
GTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAACTTGATCACGTGTGTAGTACTATGTGA
AGGCTACTACGTGAACTGTAAAAACAAGATAACATGG
Found at i:17205180 original size:16 final size:16
Alignment explanation
Indices: 17205159--17205189 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17205149 TGTTTTATTA
17205159 TTATCATTTAACTTAT
1 TTATCATTTAACTTAT
*
17205175 TTATCATTTTACTTA
1 TTATCATTTAACTTA
17205190 AATAACCTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (16 bp):
TTATCATTTAACTTAT
Found at i:17216810 original size:25 final size:25
Alignment explanation
Indices: 17216776--17216830 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
17216766 TTATTAAAGA
17216776 TAACTTAATTTCGATAGGGTTAGGT
1 TAACTTAATTTCGATAGGGTTAGGT
17216801 TAACTTAATTTCGATAGGGTTAGGT
1 TAACTTAATTTCGATAGGGTTAGGT
17216826 TAACT
1 TAACT
17216831 AGATAGACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (25 bp):
TAACTTAATTTCGATAGGGTTAGGT
Found at i:17218562 original size:50 final size:50
Alignment explanation
Indices: 17218420--17218661 Score: 175
Period size: 50 Copynumber: 4.7 Consensus size: 50
17218410 GATAATAATA
* ** * * *
17218420 TGCCAA-GACCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTATA-T
1 TGCCAATG-CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATAGG
* * * * ** *
17218469 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATAGG
* * * * *
17218519 TGCCCATGCCATGTCCTAGGCATGGTGTTACAGGGGACCTCTCATCTAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATAGG
* * **
17218569 TGCCAATGCCATGTCCCAGACATGGTCTTGC-GTGGGACCTTTCATAACCTCATTAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAG-GGGACCTCTCAT-A--T-A--GG
* *
17218625 TGCCAATCCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA
17218662 TCTCATTCTT
Statistics
Matches: 150, Mismatches: 33, Indels: 13
0.77 0.17 0.07
Matches are distributed among these distances:
49 39 0.26
50 76 0.51
53 1 0.01
54 1 0.01
56 33 0.22
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATATAGG
Found at i:17224699 original size:25 final size:25
Alignment explanation
Indices: 17224671--17224719 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
17224661 TAGCTCACAT
*
17224671 GAGCTGTGAATCAGCATGCTCTCAC
1 GAGCTGTAAATCAGCATGCTCTCAC
* *
17224696 GAGCTGTAAATCGGTATGCTCTCA
1 GAGCTGTAAATCAGCATGCTCTCA
17224720 TGAACTCTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
GAGCTGTAAATCAGCATGCTCTCAC
Found at i:17225713 original size:9 final size:9
Alignment explanation
Indices: 17225701--17225727 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
17225691 CTTAATTAAC
17225701 CTTTAAAAA
1 CTTTAAAAA
17225710 CTTTAAAAA
1 CTTTAAAAA
17225719 CTTTAAAAA
1 CTTTAAAAA
17225728 TTACACAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (9 bp):
CTTTAAAAA
Done.