Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 58 of 211
Found at i:17556471 original size:119 final size:119
Alignment explanation
Indices: 17556228--17556506 Score: 366
Period size: 119 Copynumber: 2.3 Consensus size: 119
17556218 ACTATCGACC
* * *
17556228 AATGAAAACGGATAGCATT-GACTATCGAATTATGAAAAGGGATAGGTTCAACTATCAAATTATG
1 AATGAAAAAGGATAGC-TTCGACTATCGAATTATGAAAAGGGATAGCTTCAACTATCAAACTATG
* ** * * **
17556292 AAAAGTGATAGCTTCAACTATCAAATTATGAAAAGGGATGGTGACGACCATCAGC
65 AAAAGGGATAGCGACAACGATCAAACTATGAAAAGGGATGGTGACGACCATCAAA
* * *
17556347 AATGAAAAAGGATAGCTTCGGCTATCGAATTATGAAAAGGGATAGCTTCGACTATCAAACTATTA
1 AATGAAAAAGGATAGCTTCGACTATCGAATTATGAAAAGGGATAGCTTCAACTATCAAACTATGA
* *
17556412 AAAGGGATGGCGACGACGATC-AACTATGAAAAGGGATGGTGACGACCATCAAA
66 AAAGGGATAGCGACAACGATCAAACTATGAAAAGGGATGGTGACGACCATCAAA
17556465 ACATG-AAAAGGTATAGCTTCGACTATCGAATTATGGAAAAGG
1 A-ATGAAAAAGG-ATAGCTTCGACTATCGAATTAT-GAAAAGG
17556507 ATGTGACAAC
Statistics
Matches: 140, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
118 38 0.27
119 95 0.68
120 7 0.05
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.23
Consensus pattern (119 bp):
AATGAAAAAGGATAGCTTCGACTATCGAATTATGAAAAGGGATAGCTTCAACTATCAAACTATGA
AAAGGGATAGCGACAACGATCAAACTATGAAAAGGGATGGTGACGACCATCAAA
Found at i:17556509 original size:89 final size:89
Alignment explanation
Indices: 17556258--17556506 Score: 295
Period size: 89 Copynumber: 2.8 Consensus size: 89
17556248 ACTATCGAAT
* *
17556258 TATGAAAAGGGATAGGTTCAACTATCAAATTATGAAAA-GTGATAGCTTCAACTATCAAATTATG
1 TATGAAAAGGGATAGGTTCGACTATCAAATTATGAAAAGGT-ATAGCTTCGACTATCAAATTATG
* *
17556322 AAAAGGGATGGTGACGACCATCAGC
65 AAAAGGGATGGCGACGACCATCAAC
* * * * * * * *
17556347 AATGAAAAAGGATAGCTTCGGCTATCGAATTATGAAAAGGGATAGCTTCGACTATCAAACTATTA
1 TATGAAAAGGGATAGGTTCGACTATCAAATTATGAAAAGGTATAGCTTCGACTATCAAATTATGA
*
17556412 AAAGGGATGGCGACGACGATCAAC
66 AAAGGGATGGCGACGACCATCAAC
* * ** *
17556436 TATGAAAAGGGAT-GGTGACGACCATCAAAACATGAAAAGGTATAGCTTCGACTATCGAATTATG
1 TATGAAAAGGGATAGGT-TCGACTATCAAATTATGAAAAGGTATAGCTTCGACTATCAAATTAT-
17556500 GAAAAGG
64 GAAAAGG
17556507 ATGTGACAAC
Statistics
Matches: 131, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
88 2 0.02
89 122 0.93
90 7 0.05
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (89 bp):
TATGAAAAGGGATAGGTTCGACTATCAAATTATGAAAAGGTATAGCTTCGACTATCAAATTATGA
AAAGGGATGGCGACGACCATCAAC
Found at i:17563181 original size:40 final size:40
Alignment explanation
Indices: 17563137--17563271 Score: 191
Period size: 40 Copynumber: 3.4 Consensus size: 40
17563127 GGTTCTGTGC
17563137 CTAGCAGGCTTAATGCCGGTGAATTTTTCAGACTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAATTTTTCAGACTTAATGT
* * *
17563177 CTAGCAGGCTTAATGCTGGTAAATTTTTCAGGCTTAATGT
1 CTAGCAGGCTTAATGCCGGTGAATTTTTCAGACTTAATGT
* * * *
17563217 CTAGCAAGCTTAATGCCGATGAATTTTTCAAACTTAATGG
1 CTAGCAGGCTTAATGCCGGTGAATTTTTCAGACTTAATGT
17563257 CTA-CTAGGCTTAATG
1 CTAGC-AGGCTTAATG
17563272 TCGTGTTCTG
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
39 1 0.01
40 82 0.99
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (40 bp):
CTAGCAGGCTTAATGCCGGTGAATTTTTCAGACTTAATGT
Found at i:17563718 original size:31 final size:31
Alignment explanation
Indices: 17563677--17563750 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
17563667 ATACATACAT
* *
17563677 TCGGGTATATGTTCTTGATGTATATAAATAC
1 TCGGTTATATGCTCTTGATGTATATAAATAC
* *
17563708 TCGGTTATATGCTCTTGATGTATATCAATAT
1 TCGGTTATATGCTCTTGATGTATATAAATAC
17563739 TCGGTTATATGC
1 TCGGTTATATGC
17563751 ATTCGAGGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.43
Consensus pattern (31 bp):
TCGGTTATATGCTCTTGATGTATATAAATAC
Found at i:17566304 original size:25 final size:26
Alignment explanation
Indices: 17566230--17566305 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
17566220 ACGAATTTTC
* * **
17566230 TCAAAACTTTATTGGGGGTAAAATCG
1 TCAAAATTTTATTAGGGGTAAAATTA
17566256 TCAAAATTTTATTAGGGGTAAAATTA
1 TCAAAATTTTATTAGGGGTAAAATTA
17566282 TCAAAATTTTATT-GGGGTAAAATT
1 TCAAAATTTTATTAGGGGTAAAATT
17566306 GGGGTGGGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
25 11 0.24
26 35 0.76
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.37
Consensus pattern (26 bp):
TCAAAATTTTATTAGGGGTAAAATTA
Found at i:17572093 original size:243 final size:243
Alignment explanation
Indices: 17571649--17572136 Score: 904
Period size: 243 Copynumber: 2.0 Consensus size: 243
17571639 TCTTATGAAA
* * * *
17571649 AGGTTGATGATTGTGTAATATGTATTATAAAATCCTATTATGTTATGGATGAAAAATATATGTGA
1 AGGTTAATGACTGTGTAATATGTATTATAAAATCCTATTATGTTAAGAATGAAAAATATATGTGA
17571714 TGTTGATGGACTTACTCATTTGTAAGTTGATGGTTATATAGTTTTATAAATCTTATGGCATTGGT
66 TGTTGATGGACTTACTCATTTGTAAGTTGATGGTTATATAGTTTTATAAATCTTATGGCATTGGT
*
17571779 ATAGGTTTATATTTATCCTATAAAGTTCATTATTGAAATGAAATATTATGTTTAAAGTTTATATG
131 ATAGGTTTATATTTATCCTATAAAGTTCATTATTGAAATGAAATATTATGTTTAAAGTTTATATA
17571844 AGCTTACTAAGCATTCATTGCTTATGTAATTATTTTCCTTTACTTTAC
196 AGCTTACTAAGCATTCATTGCTTATGTAATTATTTTCCTTTACTTTAC
17571892 AGGTTAATGACTGTGTAATATGTATTATAAAATCCTATTATGTTAAGAATGAAAAATATATGTGA
1 AGGTTAATGACTGTGTAATATGTATTATAAAATCCTATTATGTTAAGAATGAAAAATATATGTGA
17571957 TGTTGATGGACTTACTCATTTGTAAGTTGATGGTTATATAGTTTTATAAATCTTATGGCATTGGT
66 TGTTGATGGACTTACTCATTTGTAAGTTGATGGTTATATAGTTTTATAAATCTTATGGCATTGGT
* * *
17572022 ATAGGTTTATATTTATTCTATAAATTTCATTATTGAAATGGAATATTATGTTTAAAGTTTATATA
131 ATAGGTTTATATTTATCCTATAAAGTTCATTATTGAAATGAAATATTATGTTTAAAGTTTATATA
17572087 AGCTTACTAAGCATTCATTGCTTATGTAATTATTTTCCTTTACTTTAC
196 AGCTTACTAAGCATTCATTGCTTATGTAATTATTTTCCTTTACTTTAC
17572135 AG
1 AG
17572137 ATTATCGAAA
Statistics
Matches: 237, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
243 237 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.45
Consensus pattern (243 bp):
AGGTTAATGACTGTGTAATATGTATTATAAAATCCTATTATGTTAAGAATGAAAAATATATGTGA
TGTTGATGGACTTACTCATTTGTAAGTTGATGGTTATATAGTTTTATAAATCTTATGGCATTGGT
ATAGGTTTATATTTATCCTATAAAGTTCATTATTGAAATGAAATATTATGTTTAAAGTTTATATA
AGCTTACTAAGCATTCATTGCTTATGTAATTATTTTCCTTTACTTTAC
Found at i:17580346 original size:5 final size:5
Alignment explanation
Indices: 17580338--17580375 Score: 58
Period size: 5 Copynumber: 7.4 Consensus size: 5
17580328 CTTTACATAG
*
17580338 GTGAG GTGAT GTGAT GTGAT GGTGAT GTGAT GTGAT GT
1 GTGAT GTGAT GTGAT GTGAT -GTGAT GTGAT GTGAT GT
17580376 ACTTTACATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.37
Consensus pattern (5 bp):
GTGAT
Found at i:17580363 original size:16 final size:16
Alignment explanation
Indices: 17580338--17580374 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
17580328 CTTTACATAG
17580338 GTGA-GGTGATGTGAT
1 GTGATGGTGATGTGAT
17580353 GTGATGGTGATGTGAT
1 GTGATGGTGATGTGAT
17580369 GTGATG
1 GTGATG
17580375 TACTTTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.19, C:0.00, G:0.46, T:0.35
Consensus pattern (16 bp):
GTGATGGTGATGTGAT
Found at i:17580924 original size:5 final size:5
Alignment explanation
Indices: 17580888--17580968 Score: 107
Period size: 5 Copynumber: 16.6 Consensus size: 5
17580878 ATGTTTTAAA
*
17580888 TATAT TA-A- TATAT TAT-T T-TAT TATAAAA TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TAT--AT TATAT TATAT TATAT TATAT
17580936 TATAT TATAT TATAT TATAT TATAT TATAT TAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TAT
17580969 TATGTAAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 12
0.83 0.02 0.15
Matches are distributed among these distances:
3 3 0.04
4 6 0.09
5 55 0.81
7 4 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:17586160 original size:19 final size:19
Alignment explanation
Indices: 17586123--17586160 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
17586113 CTAATTAAGT
*
17586123 TTTAATTAGATGAATTTAG
1 TTTAATTAGATGAAATTAG
17586142 TTTAATTAAGA-GAAATTAG
1 TTTAATT-AGATGAAATTAG
17586161 GAAAAAGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (19 bp):
TTTAATTAGATGAAATTAG
Found at i:17586321 original size:22 final size:22
Alignment explanation
Indices: 17586296--17586352 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 22
17586286 GATTTTTATG
*
17586296 TTTTAAATATATTAATATATTA
1 TTTTAATTATATTAATATATTA
*
17586318 TTTT-ATTATA-AAATATATTA
1 TTTTAATTATATTAATATATTA
*
17586338 TATTATATTATATTA
1 TTTTA-ATTATATTA
17586353 TTATGTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 12 0.43
21 5 0.18
22 10 0.36
23 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTAATTATATTAATATATTA
Found at i:17586334 original size:20 final size:22
Alignment explanation
Indices: 17586309--17586349 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
17586299 TAAATATATT
17586309 AATATATTAT-TT-TATTATAA
1 AATATATTATATTATATTATAA
17586329 AATATATTATATTATATTATA
1 AATATATTATATTATATTATA
17586350 TTATTATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
AATATATTATATTATATTATAA
Found at i:17586345 original size:30 final size:28
Alignment explanation
Indices: 17586300--17586356 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
17586290 TTTATGTTTT
*
17586300 AAATATATTAATATATTATTTTATTATA
1 AAATATATTAATATATTATATTATTATA
17586328 AAATATATTATATTATATTATATTATTAT
1 AAATATATTA-A-TATATTATATTATTAT
17586357 GTAAAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 10 0.38
29 1 0.04
30 15 0.58
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (28 bp):
AAATATATTAATATATTATATTATTATA
Found at i:17587509 original size:13 final size:13
Alignment explanation
Indices: 17587489--17587526 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
17587479 TTTGATTGGA
17587489 AAATGAATTAAA-
1 AAATGAATTAAAT
17587501 AATATGAATTAAAT
1 AA-ATGAATTAAAT
17587515 AAAGTGAATTAA
1 AAA-TGAATTAA
17587527 TTTATGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 11 0.48
14 10 0.43
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (13 bp):
AAATGAATTAAAT
Found at i:17587689 original size:17 final size:19
Alignment explanation
Indices: 17587667--17587701 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
17587657 AAAGTGATCT
17587667 TGAATTG-GAAA-TGAAAG
1 TGAATTGTGAAATTGAAAG
17587684 TGAATTGTGAAATTGAAA
1 TGAATTGTGAAATTGAAA
17587702 TACCCTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 4 0.25
19 5 0.31
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.29
Consensus pattern (19 bp):
TGAATTGTGAAATTGAAAG
Found at i:17587812 original size:23 final size:23
Alignment explanation
Indices: 17587786--17587840 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
17587776 GACTTTACCG
17587786 ATCAGGCACTTTATGTGTCCTAT
1 ATCAGGCACTTTATGTGTCCTAT
**
17587809 ATCAGGCACTTTATGTGTTGTAT
1 ATCAGGCACTTTATGTGTCCTAT
*
17587832 TTCAGGCAC
1 ATCAGGCAC
17587841 ATCGTGTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (23 bp):
ATCAGGCACTTTATGTGTCCTAT
Found at i:17587859 original size:21 final size:22
Alignment explanation
Indices: 17587822--17587882 Score: 90
Period size: 21 Copynumber: 2.8 Consensus size: 22
17587812 AGGCACTTTA
17587822 TGTGTTGTATTTCAGGCACATCG
1 TGTGTTGTA-TTCAGGCACATCG
*
17587845 TGTGTTGTATT-AGGCACCTCG
1 TGTGTTGTATTCAGGCACATCG
17587866 TGTGTTGT-TTCAGGCAC
1 TGTGTTGTATTCAGGCAC
17587883 TTATGTGTCG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
20 2 0.06
21 23 0.64
22 2 0.06
23 9 0.25
ACGTcount: A:0.15, C:0.18, G:0.28, T:0.39
Consensus pattern (22 bp):
TGTGTTGTATTCAGGCACATCG
Found at i:17588208 original size:18 final size:18
Alignment explanation
Indices: 17588187--17588224 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
17588177 TGTTATTGTT
17588187 AATTAA-TGAAACTTTAAG
1 AATTAATTGAAA-TTTAAG
*
17588205 AATTAATTGATATTTAAG
1 AATTAATTGAAATTTAAG
17588223 AA
1 AA
17588225 ATTGGATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.37
Consensus pattern (18 bp):
AATTAATTGAAATTTAAG
Found at i:17591264 original size:43 final size:43
Alignment explanation
Indices: 17591201--17591448 Score: 273
Period size: 43 Copynumber: 5.8 Consensus size: 43
17591191 AGAAATAAAT
* * * *
17591201 GCCGATATAGATCATGACCTTTAGCGGCGCTATTCCCATAAAC
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * * * *
17591244 GCCGCTATTGATCGGGACCTTTAGCGACG-ATTACTCCACAAAT
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTC-CCACAAAC
* *
17591287 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCTCACAAAT
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
17591330 GCTGCTATAGCTCAGGACCTTTAGTGGCGTTTTTCCCACAAAC
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
17591373 GTCGCTATAGATCAGGACCTTTAACGGCGCTTTTTCCATAAAC
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* * *
17591416 GCCGCTATAGCTCAAGACCTTTAGCGACGCTTT
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTT
17591449 GATTACAAAC
Statistics
Matches: 168, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
42 2 0.01
43 163 0.97
44 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (43 bp):
GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:17591348 original size:86 final size:86
Alignment explanation
Indices: 17591197--17591444 Score: 302
Period size: 86 Copynumber: 2.9 Consensus size: 86
17591187 TTTCAGAAAT
* * * * * * *
17591197 AAATGCCGATATAGATCATGACCTTTAGCGGCGCTATTCCCATAAACGCCGCTATTGATCGGGAC
1 AAATGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCTCATAAACGCCGCTATAGCTCAGGAC
17591262 CTTTAGCGACGATTACT-CCAC
66 CTTTAGCGACG-TTACTCCCAC
* * *
17591283 AAATGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCTCACAAATGCTGCTATAGCTCAGGAC
1 AAATGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCTCATAAACGCCGCTATAGCTCAGGAC
* * **
17591348 CTTTAGTGGCGTTTTTCCCAC
66 CTTTAGCGACGTTACTCCCAC
* * * *
17591369 AAACGTCGCTATAGATCAGGACCTTTAACGGCGCTTTT-TCCATAAACGCCGCTATAGCTCAAGA
1 AAATGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCT-CATAAACGCCGCTATAGCTCAGGA
17591433 CCTTTAGCGACG
65 CCTTTAGCGACG
17591445 CTTTGATTAC
Statistics
Matches: 137, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
85 4 0.03
86 133 0.97
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (86 bp):
AAATGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCTCATAAACGCCGCTATAGCTCAGGAC
CTTTAGCGACGTTACTCCCAC
Found at i:17591379 original size:129 final size:129
Alignment explanation
Indices: 17591197--17591448 Score: 315
Period size: 129 Copynumber: 2.0 Consensus size: 129
17591187 TTTCAGAAAT
* * * *
17591197 AAATGCCGATATAGATCATGACCTTTAGCGGCGCTATTCCCATAAACGCCGCTATTGATCGGGAC
1 AAATGCCGATATAGATCAGGACCTTTAGCGGCGCTATTCCCACAAACGCCGCTATAGATCAGGAC
* * * *
17591262 CTTTAGCGACGATTACTCCACAAATGCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCTCAC
66 CTTTAACGACGATTACTCCACAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCTCAC
* * * * * * *
17591326 AAATGCTGCTATAGCTCAGGACCTTTAGTGGCGTTTTTCCCACAAACGTCGCTATAGATCAGGAC
1 AAATGCCGATATAGATCAGGACCTTTAGCGGCGCTATTCCCACAAACGCCGCTATAGATCAGGAC
* * ** * *
17591391 CTTTAACGGCGCTTTTTCCATAAACGCCGCTATAGCTCAAGACCTTTAGCGACGCTTT
66 CTTTAACGACGATTACTCCACAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTT
17591449 GATTACAAAC
Statistics
Matches: 102, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
129 102 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (129 bp):
AAATGCCGATATAGATCAGGACCTTTAGCGGCGCTATTCCCACAAACGCCGCTATAGATCAGGAC
CTTTAACGACGATTACTCCACAAACGCCGCTATAGATCAAGACCTTTAGCGACGCTTTTCTCAC
Found at i:17591556 original size:16 final size:16
Alignment explanation
Indices: 17591537--17591570 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17591527 AAATATTAAA
*
17591537 TATTAAAATCAAACAT
1 TATTAAAATCAAAAAT
*
17591553 TATTAATATCAAAAAT
1 TATTAAAATCAAAAAT
17591569 TA
1 TA
17591571 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATCAAAAAT
Found at i:17596328 original size:21 final size:18
Alignment explanation
Indices: 17596286--17596339 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 18
17596276 CAAAACACGC
*
17596286 AAAAAATTGAACCGGATA
1 AAAAAACTGAACCGGATA
17596304 AAAAAACTGAACCGAGAACTA
1 AAAAAACTGAACCG-G-A-TA
*
17596325 AAAATACTGAACCGG
1 AAAAAACTGAACCGG
17596340 GATGGGATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 13 0.42
19 1 0.03
20 2 0.06
21 15 0.48
ACGTcount: A:0.54, C:0.17, G:0.17, T:0.13
Consensus pattern (18 bp):
AAAAAACTGAACCGGATA
Found at i:17596504 original size:7 final size:7
Alignment explanation
Indices: 17596492--17596543 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
17596482 ACTAGTTAAT
17596492 CTAAACC
1 CTAAACC
17596499 CTAAACC
1 CTAAACC
*
17596506 ATAAA-C
1 CTAAACC
*
17596512 CTAATCC
1 CTAAACC
17596519 CTAAAACC
1 CT-AAACC
17596527 CTAAAACC
1 CT-AAACC
*
17596535 ATAAACC
1 CTAAACC
17596542 CT
1 CT
17596544 TAACACATAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
6 4 0.11
7 20 0.54
8 13 0.35
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:17596512 original size:14 final size:14
Alignment explanation
Indices: 17596493--17596714 Score: 101
Period size: 14 Copynumber: 15.3 Consensus size: 14
17596483 CTAGTTAATC
17596493 TAAACCCTAAACCA
1 TAAACCCTAAACCA
* *
17596507 TAAA-CCTAATCCC
1 TAAACCCTAAACCA
17596520 TAAAACCCTAAAACCA
1 T-AAACCCT-AAACCA
*
17596536 TAAACCCTTAACACA
1 TAAACCCTAAAC-CA
* *
17596551 T-AACCTTTAAACCT
1 TAAACC-CTAAACCA
* * *
17596565 TAAACCC-CAGCCTT
1 TAAACCCTAAACC-A
* *
17596579 TAAACCATAAATCA
1 TAAACCCTAAACCA
*
17596593 TAAACCATAAACCA
1 TAAACCCTAAACCA
*
17596607 TAATCCCTAAACCCA
1 TAAACCCTAAA-CCA
* ** *
17596622 TAATCTATAAACCT
1 TAAACCCTAAACCA
**
17596636 TAAAATGCTAACACC-
1 T-AAACCCTAA-ACCA
17596651 TAAACCTATCTAAACCA
1 TAAACC---CTAAACCA
*
17596668 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
17596682 AAAACCCTAAACCCA
1 TAAACCCTAAA-CCA
* * *
17596697 TAATCCATAAACCT
1 TAAACCCTAAACCA
17596711 TAAA
1 TAAA
17596715 ATGGTAACAC
Statistics
Matches: 156, Mismatches: 36, Indels: 32
0.70 0.16 0.14
Matches are distributed among these distances:
13 11 0.07
14 73 0.47
15 52 0.33
16 11 0.07
17 9 0.06
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.21
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:17596523 original size:13 final size:14
Alignment explanation
Indices: 17596492--17596543 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
17596482 ACTAGTTAAT
17596492 CTAAACCCTAAACC
1 CTAAACCCTAAACC
* *
17596506 ATAAA-CCTAATCC
1 CTAAACCCTAAACC
17596519 CTAAAACCCTAAAACC
1 CT-AAACCCT-AAACC
*
17596535 ATAAACCCT
1 CTAAACCCT
17596544 TAACACATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
13 8 0.27
14 7 0.23
15 10 0.33
16 5 0.17
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
CTAAACCCTAAACC
Found at i:17596589 original size:7 final size:7
Alignment explanation
Indices: 17596579--17596714 Score: 69
Period size: 7 Copynumber: 18.6 Consensus size: 7
17596569 CCCCAGCCTT
17596579 TAAACCA
1 TAAACCA
*
17596586 TAAATCA
1 TAAACCA
17596593 TAAACCA
1 TAAACCA
17596600 TAAACCA
1 TAAACCA
* *
17596607 TAATCCC
1 TAAACCA
17596614 TAAACCCA
1 TAAA-CCA
* *
17596622 TAATCTA
1 TAAACCA
*
17596629 TAAACCT
1 TAAACCA
*
17596636 TAAAATGC-
1 T-AAA-CCA
17596644 TAACACC-
1 TAA-ACCA
17596651 TAAACCTA
1 TAAACC-A
17596659 TCTAAACCA
1 --TAAACCA
* *
17596668 TATACCC
1 TAAACCA
17596675 TAAACCA
1 TAAACCA
* *
17596682 AAAACCC
1 TAAACCA
17596689 TAAACCCA
1 TAAA-CCA
*
17596697 TAATCCA
1 TAAACCA
*
17596704 TAAACCT
1 TAAACCA
17596711 TAAA
1 TAAA
17596715 ATGGTAACAC
Statistics
Matches: 96, Mismatches: 24, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
6 3 0.03
7 70 0.73
8 15 0.16
9 2 0.02
10 6 0.06
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:17596632 original size:15 final size:15
Alignment explanation
Indices: 17596591--17596634 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
17596581 AACCATAAAT
*
17596591 CATAAACCATAAA-C
1 CATAATCCATAAACC
*
17596605 CATAATCCCTAAACC
1 CATAATCCATAAACC
*
17596620 CATAATCTATAAACC
1 CATAATCCATAAACC
17596635 TTAAAATGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAATCCATAAACC
Found at i:17597035 original size:41 final size:40
Alignment explanation
Indices: 17596941--17597066 Score: 139
Period size: 40 Copynumber: 3.1 Consensus size: 40
17596931 TAAATTATTT
* * * *
17596941 TAAATCCCTAAGCATTAGCGGTGCTCTTCAAAAAACGCCGC
1 TAAA-CCCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCGC
**
17596982 TAAA-AATAGAGCATTAGCGGCGCTTTTCCAAAAACGCCGC
1 TAAACCCT-GAGCATTAGCGGCGCTTTTCCAAAAACGCCGC
*
17597022 TAAAGCCCTGAGCATTAGCGGCGC-TTTCTCTAAAACGCCGC
1 TAAA-CCCTGAGCATTAGCGGCGCTTTTC-CAAAAACGCCGC
17597063 TAAA
1 TAAA
17597067 TCCCAGAAAC
Statistics
Matches: 72, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.01
40 36 0.50
41 34 0.47
42 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (40 bp):
TAAACCCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCGC
Found at i:17597185 original size:41 final size:42
Alignment explanation
Indices: 17597134--17597212 Score: 124
Period size: 41 Copynumber: 1.9 Consensus size: 42
17597124 AAAAACGCCG
*
17597134 CTAAAGCTCGATCTTTAGCGGC-GTTTTATCCAAACGCACCA
1 CTAAAGCTCGATCTTTAGCAGCAGTTTTATCCAAACGCACCA
* *
17597175 CTAATGCTCGATCTTTAGCAGCATTTTTATCCAAACGC
1 CTAAAGCTCGATCTTTAGCAGCAGTTTTATCCAAACGC
17597213 CGCTAAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
41 20 0.59
42 14 0.41
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (42 bp):
CTAAAGCTCGATCTTTAGCAGCAGTTTTATCCAAACGCACCA
Found at i:17601931 original size:50 final size:50
Alignment explanation
Indices: 17601858--17602001 Score: 182
Period size: 50 Copynumber: 2.9 Consensus size: 50
17601848 TCTTGTACTA
* * * ** *
17601858 CCAATTCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACCGGTG
* ** *
17601908 CCCA-TGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCCCGGTG
1 CCAACT-CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACCGGTG
17601958 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
1 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
17602002 ACCTCAATGA
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 1 0.01
50 77 0.97
51 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATACCGGTG
Found at i:17602029 original size:56 final size:50
Alignment explanation
Indices: 17601858--17602053 Score: 169
Period size: 50 Copynumber: 3.8 Consensus size: 50
17601848 TCTTGTACTA
* * * ** ** *
17601858 CCAATTCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCCCGATG
* ** *
17601908 CCCA-TGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCCCGGTG
1 CCAACT-CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCCCGATG
17601958 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATG
1 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT--CC-C---GATG
** * * *
17602014 TTAATTCCATGTCCCATACATGGTCTTACATGGGATCTCT
1 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCT
17602054 TTACCCAAAT
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
49 1 0.01
50 77 0.64
51 1 0.01
52 2 0.02
53 1 0.01
56 38 0.32
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (50 bp):
CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCCCGATG
Found at i:17609460 original size:50 final size:50
Alignment explanation
Indices: 17609336--17609726 Score: 326
Period size: 50 Copynumber: 7.7 Consensus size: 50
17609326 GATAATAACA
* * * * *
17609336 TGCCAAAGCCATGTCCCAAACATGGTATTACATGGGATGTT-TCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* * * *
17609385 TTCCAATGCCATATCCCATATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* ** ** * *
17609435 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * * *
17609485 TGCCAACGCCATGTCCCAGACATGGTATTACATGGGATGTT-TCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGG
* * * * *
17609534 TTCCAATGCCATATGCCATATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * ** * *
17609584 TGCCCATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* ** *
17609634 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-A--TC---GG
*
17609690 TGCCAATGCCATGTCCCAGACATGGTCTTACACGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
17609727 TCCCTTTACC
Statistics
Matches: 271, Mismatches: 57, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
48 8 0.03
49 69 0.25
50 156 0.58
51 1 0.00
53 1 0.00
56 36 0.13
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:17609545 original size:99 final size:98
Alignment explanation
Indices: 17609336--17609728 Score: 317
Period size: 99 Copynumber: 3.9 Consensus size: 98
17609326 GATAATAACA
* * * * * * * *
17609336 TGCCAAAGCCATGTCCCAAACATGGTATTACATGGGA--TGT-TTCTTGTACTTCCAATGCCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTG--GTGCCAATGCCATG
* * * * *
17609398 TCCCATATATGGTCTTACATGGGAGTTCTCATATCGG
64 TCCCAGACATGGTCTTACATGGGA--TCTCATCTTGC
* ** *
17609435 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAATGCCATGTC
* * *
17609500 CCAGACATGGTATTACATGGGATGT-TTCTTGTAC
66 CCAGACATGGTCTTACATGGGATCTCATCTTG--C
* * * * * ** * * *
17609534 TTCCAATGCCATATGCCATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAATGCCATGTC
* *
17609599 CCAGACATGGTCTTACGTGGGACCTCTCATCTTGG
66 CCAGACATGGTCTTACATGGGA--TCTCATCTTGC
* *
17609634 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGATGCCAATGC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT---CT---TGGTGCCAATGC
*
17609699 CATGTCCCAGACATGGTCTTACACGGGATC
60 CATGTCCCAGACATGGTCTTACATGGGATC
17609729 CCTTTACCCA
Statistics
Matches: 227, Mismatches: 53, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
97 3 0.01
98 2 0.01
99 102 0.45
100 68 0.30
101 4 0.02
102 10 0.04
103 1 0.00
104 2 0.01
106 35 0.15
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (98 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAATGCCATGTC
CCAGACATGGTCTTACATGGGATCTCATCTTGC
Found at i:17609606 original size:149 final size:149
Alignment explanation
Indices: 17609336--17609670 Score: 625
Period size: 149 Copynumber: 2.2 Consensus size: 149
17609326 GATAATAACA
* *
17609336 TGCCAAAGCCATGTCCCAAACATGGTATTACATGGGATGTTTCTTGTACTTCCAATGCCATATCC
1 TGCCAACGCCATGTCCCAGACATGGTATTACATGGGATGTTTCTTGTACTTCCAATGCCATATCC
17609401 CATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTCTTAC
66 CATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTCTTAC
17609466 GGGGGACCTCTCATCTTGG
131 GGGGGACCTCTCATCTTGG
*
17609485 TGCCAACGCCATGTCCCAGACATGGTATTACATGGGATGTTTCTTGTACTTCCAATGCCATATGC
1 TGCCAACGCCATGTCCCAGACATGGTATTACATGGGATGTTTCTTGTACTTCCAATGCCATATCC
17609550 CATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTCTTAC
66 CATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTCTTAC
*
17609615 GTGGGACCTCTCATCTTGG
131 GGGGGACCTCTCATCTTGG
*
17609634 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAACGCCATGTCCCAGACATGGTATTACATGGGA
17609671 CCTCTCATAA
Statistics
Matches: 181, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 181 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.30
Consensus pattern (149 bp):
TGCCAACGCCATGTCCCAGACATGGTATTACATGGGATGTTTCTTGTACTTCCAATGCCATATCC
CATATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAGACATGGTCTTAC
GGGGGACCTCTCATCTTGG
Found at i:17619388 original size:12 final size:12
Alignment explanation
Indices: 17619373--17619414 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
17619363 TTGCTGCTAC
17619373 GTCTACTTCTAT
1 GTCTACTTCTAT
*
17619385 GTCTACTTCTAC
1 GTCTACTTCTAT
*
17619397 ATCTA-TTACTAT
1 GTCTACTT-CTAT
17619409 GTCTAC
1 GTCTAC
17619415 AACTAAGTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
11 2 0.08
12 22 0.92
ACGTcount: A:0.21, C:0.26, G:0.07, T:0.45
Consensus pattern (12 bp):
GTCTACTTCTAT
Found at i:17624454 original size:24 final size:24
Alignment explanation
Indices: 17624409--17624454 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
17624399 AACAAAATAA
**
17624409 AATAACATAAAGTGACTTGAAATT
1 AATAACATAAAGTGACGAGAAATT
* *
17624433 AATAACATTAAGTGCCGAGAAA
1 AATAACATAAAGTGACGAGAAA
17624455 ACTCTAATTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.15, T:0.24
Consensus pattern (24 bp):
AATAACATAAAGTGACGAGAAATT
Found at i:17625884 original size:5 final size:5
Alignment explanation
Indices: 17625876--17625901 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
17625866 CCAAAAACAA
17625876 TATAT TATAT TATAT TATAT TATAT T
1 TATAT TATAT TATAT TATAT TATAT T
17625902 TTAAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TATAT
Found at i:17626021 original size:26 final size:26
Alignment explanation
Indices: 17625987--17626052 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
17625977 TAAATTTAAT
*
17625987 TTTTTTATTTATAAAGTTTTA-AAATA
1 TTTTATATTT-TAAAGTTTTATAAATA
* * *
17626013 TTTTATATTTTATATTTTTATGAATA
1 TTTTATATTTTAAAGTTTTATAAATA
17626039 TTTTATATTTTAAA
1 TTTTATATTTTAAA
17626053 ATATTACTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 8 0.24
26 26 0.76
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (26 bp):
TTTTATATTTTAAAGTTTTATAAATA
Found at i:17626022 original size:7 final size:7
Alignment explanation
Indices: 17626010--17626050 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
17626000 AAGTTTTAAA
17626010 ATATTTT
1 ATATTTT
17626017 ATATTTT
1 ATATTTT
17626024 ATATTTT
1 ATATTTT
**
17626031 -TA-TGA
1 ATATTTT
17626036 ATATTTT
1 ATATTTT
17626043 ATATTTT
1 ATATTTT
17626050 A
1 A
17626051 AAATATTACT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
5 1 0.04
6 4 0.14
7 23 0.82
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (7 bp):
ATATTTT
Found at i:17626023 original size:17 final size:19
Alignment explanation
Indices: 17626017--17626057 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
17626007 AAAATATTTT
*
17626017 ATATTTTATATTTTTATGA
1 ATATTTTATATTTTTATAA
17626036 ATATTTTATA-TTTTA-AA
1 ATATTTTATATTTTTATAA
17626053 ATATT
1 ATATT
17626058 ACTAAATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.29
18 5 0.24
19 10 0.48
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (19 bp):
ATATTTTATATTTTTATAA
Found at i:17626332 original size:2 final size:2
Alignment explanation
Indices: 17626325--17626358 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
17626315 GGATATGTAT
17626325 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
17626359 ATATTAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:17628333 original size:23 final size:24
Alignment explanation
Indices: 17628284--17628338 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
17628274 TAAAGCTGAT
* *
17628284 TTTATATTTTTATAATATATTTTA
1 TTTATATTTTTATAATATATGTAA
17628308 TTT-TATTTTTAT-ATATTATGTAA
1 TTTATATTTTTATAATA-TATGTAA
17628331 TTTATATT
1 TTTATATT
17628339 ACATAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 3 0.11
23 17 0.63
24 7 0.26
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTATATTTTTATAATATATGTAA
Found at i:17629456 original size:14 final size:16
Alignment explanation
Indices: 17629429--17629460 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
17629419 TCTAAAGACT
17629429 AAAAATGATCAAATTA
1 AAAAATGATCAAATTA
17629445 AAAAAT-AT-AAATTA
1 AAAAATGATCAAATTA
17629459 AA
1 AA
17629461 TTACTTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 2 0.12
16 6 0.38
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (16 bp):
AAAAATGATCAAATTA
Found at i:17632643 original size:10 final size:10
Alignment explanation
Indices: 17632614--17632643 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
17632604 ATTCATTAGC
17632614 CTCAAAACCT
1 CTCAAAACCT
17632624 CTCAACAACCT
1 CTCAA-AACCT
17632635 CTCAAAACC
1 CTCAAAACC
17632644 CCTAAACCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.40, C:0.43, G:0.00, T:0.17
Consensus pattern (10 bp):
CTCAAAACCT
Found at i:17635121 original size:17 final size:17
Alignment explanation
Indices: 17635101--17635134 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
17635091 AGAAATTATT
17635101 ATGGTAGAAAAATCTAA
1 ATGGTAGAAAAATCTAA
17635118 ATGGTAGAAAAATCTAA
1 ATGGTAGAAAAATCTAA
17635135 GTTCTTGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.18, T:0.24
Consensus pattern (17 bp):
ATGGTAGAAAAATCTAA
Found at i:17636342 original size:35 final size:35
Alignment explanation
Indices: 17636303--17636451 Score: 129
Period size: 35 Copynumber: 4.1 Consensus size: 35
17636293 GATTCATTTG
*
17636303 ACTAGTGCTGGGCACAAATATCGTTGGTTTATCCA
1 ACTAGTGCTGGGCACAAATATCGTCGGTTTATCCA
* * * * * * *
17636338 ACTAGAGTTGGGCTCACTAATTGTTTCATCAGTTTATCCG
1 ACTAGTGCTGGG--CAC-AA--ATATCGTCGGTTTATCCA
*
17636378 ACTAGTGCTGGGCACACAT-TCGTCGGTTTATCCA
1 ACTAGTGCTGGGCACAAATATCGTCGGTTTATCCA
* * * *
17636412 ACTAGCGTTGGGCGCAAATATCGTTGGTTTATCCA
1 ACTAGTGCTGGGCACAAATATCGTCGGTTTATCCA
17636447 ACTAG
1 ACTAG
17636452 ACCTGGGCTC
Statistics
Matches: 88, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
34 27 0.31
35 30 0.34
37 4 0.05
38 5 0.06
40 22 0.25
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (35 bp):
ACTAGTGCTGGGCACAAATATCGTCGGTTTATCCA
Found at i:17636553 original size:109 final size:109
Alignment explanation
Indices: 17636301--17636537 Score: 325
Period size: 109 Copynumber: 2.2 Consensus size: 109
17636291 TCGATTCATT
* ** *
17636301 TGACTAGTGCTGGGCACAAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCACTAATTGTTTCA
1 TGACTAGTGTTGGGCACAAATATCGTTGGTTTATCCAACTAGACCTGGGCTCACTAATTATTTCA
** *
17636366 TCAGTTTATCCGACTAGTGCTGGGCACACATTCGTCGGTTTATC
66 TCAGTTTATCCGACTAGCACTGGGCACACATTCGTCAGTTTATC
** * *
17636410 CAACTAGCGTTGGGCGCAAATATCGTTGGTTTATCCAACTAGACCTGGGCTCACTAATTATTTCA
1 TGACTAGTGTTGGGCACAAATATCGTTGGTTTATCCAACTAGACCTGGGCTCACTAATTATTTCA
*
17636475 TCGGTTTATCCGACTAGCACTGGGTGCA-AC-TTCCGTCAGTTTATC
66 TCAGTTTATCCGACTAGCACT-GG-GCACACATT-CGTCAGTTTATC
17636520 TGACTAGTGTTGGGCACA
1 TGACTAGTGTTGGGCACA
17636538 CATTTATCGG
Statistics
Matches: 109, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
109 77 0.71
110 29 0.27
111 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.32
Consensus pattern (109 bp):
TGACTAGTGTTGGGCACAAATATCGTTGGTTTATCCAACTAGACCTGGGCTCACTAATTATTTCA
TCAGTTTATCCGACTAGCACTGGGCACACATTCGTCAGTTTATC
Found at i:17636567 original size:109 final size:109
Alignment explanation
Indices: 17636311--17636568 Score: 290
Period size: 109 Copynumber: 2.4 Consensus size: 109
17636301 TGACTAGTGC
* * * *
17636311 TGGGCACAAATATCGTTGGTTTATCCAACTAGAGTTGGGCTCACTAATTGTTTCATCAGTTTATC
1 TGGGCACAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTTCATCAGTTTATC
** *
17636376 CGACTAGTGCTGGGCACACATTCGTCGGTTTATCCAACTAGCGT
66 CGACTAGCACTGGGCACACATTCGTCAGTTTATCCAACTAGCGT
* * * * *
17636420 TGGGCGCAAATATCGTTGGTTTATCCAACTAGACCTGGGCTCACTAATTATTTCATCGGTTTATC
1 TGGGCACAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTTCATCAGTTTATC
** *
17636485 CGACTAGCACTGGGTGCA-AC-TTCCGTCAGTTTATCTGACTAGTGT
66 CGACTAGCACT-GG-GCACACATT-CGTCAGTTTATCCAACTAGCGT
* * *
17636530 TGGGCACACAT-TTATCGGTTTATCTGAA-TAGAGCTGGGC
1 TGGGCACAAATATCATCGGTTTATC-CAACTAGAGCTGGGC
17636569 GTAAACTCAT
Statistics
Matches: 127, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
109 91 0.72
110 33 0.26
111 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (109 bp):
TGGGCACAAATATCATCGGTTTATCCAACTAGAGCTGGGCTCACTAATTATTTCATCAGTTTATC
CGACTAGCACTGGGCACACATTCGTCAGTTTATCCAACTAGCGT
Found at i:17643130 original size:17 final size:18
Alignment explanation
Indices: 17643093--17643129 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
17643083 AAGCTGTCTC
17643093 AAGTGCATGTCCCCAAAA
1 AAGTGCATGTCCCCAAAA
17643111 AAGTGCATGTCCCCAAAA
1 AAGTGCATGTCCCCAAAA
17643129 A
1 A
17643130 GAAGTCGGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.27, G:0.16, T:0.16
Consensus pattern (18 bp):
AAGTGCATGTCCCCAAAA
Found at i:17646739 original size:26 final size:26
Alignment explanation
Indices: 17646704--17646755 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17646694 AATGTGAAAG
*
17646704 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
17646730 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
17646756 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:17646766 original size:103 final size:104
Alignment explanation
Indices: 17646626--17646991 Score: 609
Period size: 103 Copynumber: 3.6 Consensus size: 104
17646616 TGTATATAAA
** * * *
17646626 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
17646690 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
17646729 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
17646794 TGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
17646832 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
17646897 TGAAA--TAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
17646934 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCG-GATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
17646992 ATAACGGTTA
Statistics
Matches: 252, Mismatches: 8, Indels: 8
0.94 0.03 0.03
Matches are distributed among these distances:
101 8 0.03
102 103 0.41
103 140 0.56
104 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:17653805 original size:26 final size:26
Alignment explanation
Indices: 17653770--17653821 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17653760 AATGTGAAAG
*
17653770 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
17653796 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
17653822 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:17653832 original size:103 final size:103
Alignment explanation
Indices: 17653692--17654056 Score: 605
Period size: 103 Copynumber: 3.6 Consensus size: 103
17653682 TGTATATAAA
** * * *
17653692 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
17653756 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
17653795 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
17653860 TGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
17653898 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
17653963 TGAAA--TAAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
17653999 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCG-GATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
17654057 ATAACGGTAA
Statistics
Matches: 251, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
100 8 0.03
101 53 0.21
102 49 0.20
103 140 0.56
104 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:17654009 original size:26 final size:26
Alignment explanation
Indices: 17653974--17654025 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
17653964 GAAATAAAAG
*
17653974 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
17654000 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
17654026 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:17661462 original size:39 final size:40
Alignment explanation
Indices: 17661338--17661516 Score: 190
Period size: 40 Copynumber: 4.5 Consensus size: 40
17661328 ATATCCGGAC
**
17661338 TAAGATCCCGAAGGCATTTGTGCGAGATACAAGTTCCGGGT
1 TAAG-TCCCGAAGGCATTTGTGCGAGATACAAAATCCGGGT
**
17661379 TAAG-CCGCGAAGGC-TATTGTGCGAGATATTAAATCCGGGT
1 TAAGTCC-CGAAGGCAT-TTGTGCGAGATACAAAATCCGGGT
17661419 TAAGTCCCGAAGGCATTTCGTGCGAG-T-CAAAATCCGGGT
1 TAAGTCCCGAAGGCATTT-GTGCGAGATACAAAATCCGGGT
* * *
17661458 TAAGTTCCCGAAGGCA-TTGTGTGAGTTACTAAAA-CCGGGC
1 TAAG-TCCCGAAGGCATTTGTGCGAGATAC-AAAATCCGGGT
*
17661498 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
17661517 AACGAGGAGC
Statistics
Matches: 119, Mismatches: 9, Indels: 21
0.80 0.06 0.14
Matches are distributed among these distances:
38 6 0.05
39 31 0.26
40 64 0.54
41 18 0.15
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGATACAAAATCCGGGT
Found at i:17661496 original size:79 final size:80
Alignment explanation
Indices: 17661332--17661516 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 80
17661322 GTGAATATAT
* **
17661332 CCGGACTAAGATCCCGAAGGCATTTGTGCGAGATACAAGTTCCGGGTTAAGCCGCGAAGGCTATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACAAAATCCGGGTTAAGCCGCGAAGGCTATT
* *
17661397 GTGCGAGATATTAAAT
65 GTGCGAGATACTAAAA
*
17661413 CCGGGTTAAGTCCCGAAGGCATTTCGTGCGAG-T-CAAAATCCGGGTTAAGTTCC-CGAAGGC-A
1 CCGGGCTAAGTCCCGAAGGCATTT-GTGCGAGATACAAAATCCGGGTTAAG--CCGCGAAGGCTA
* *
17661474 TTGTGTGAGTTACTAAAA
63 TTGTGCGAGATACTAAAA
*
17661492 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
17661517 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 1 0.01
79 51 0.56
80 22 0.24
81 17 0.19
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACAAAATCCGGGTTAAGCCGCGAAGGCTATTG
TGCGAGATACTAAAA
Found at i:17665477 original size:33 final size:36
Alignment explanation
Indices: 17665422--17665492 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 36
17665412 GGAAAGAGAA
17665422 AGAGGAGAGAAAAGTTGAAAAGAAGAAGAAAAAAGAG
1 AGAGGAGAGAAAAGTT-AAAAGAAGAAGAAAAAAGAG
* *
17665459 AGAGGA-AGAAAAG-T-AAAGAAGGAGAAAGAAGAG
1 AGAGGAGAGAAAAGTTAAAAGAAGAAGAAAAAAGAG
17665492 A
1 A
17665493 AGAGAAAGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 18 0.56
35 1 0.03
36 7 0.22
37 6 0.19
ACGTcount: A:0.62, C:0.00, G:0.34, T:0.04
Consensus pattern (36 bp):
AGAGGAGAGAAAAGTTAAAAGAAGAAGAAAAAAGAG
Found at i:17668114 original size:40 final size:40
Alignment explanation
Indices: 17668062--17668159 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 40
17668052 GGACTAAGAT
**
17668062 CGAAGGCATTTGTGCGAGATACCAGTTTCCGGGTTAAGCCC
1 CGAAGGCATTTGTGCGAGATACCA-AATCCGGGTTAAGCCC
* * *
17668103 CGGAGGC-TTTGTGCGAGATACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTTGTGCGAGATACCAAATCCGGGTTAAGCCC
*
17668142 CGAAGGCATTCGTGCGAG
1 CGAAGGCATTTGTGCGAG
17668160 TCATTAATCC
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 19 0.39
40 24 0.49
41 6 0.12
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.23
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGATACCAAATCCGGGTTAAGCCC
Found at i:17668175 original size:40 final size:38
Alignment explanation
Indices: 17668062--17668198 Score: 125
Period size: 39 Copynumber: 3.5 Consensus size: 38
17668052 GGACTAAGAT
* ** *
17668062 CGAAGGCATTTGTGCGAGATACCAGTTTCCGGGTTAAGCCC
1 CGAAGGCA-TTGTGCGAG-TACTA-AATCCGGGTTAAGTCC
* *
17668103 CGGAGGCTTTGTGCGAGATACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTGTGCGAG-TACTAAATCCGGGTTAAGTCC
*
17668142 CGAAGGCATTCGTGCGAGT-CATTAATCCGGGGTTAAGT-C
1 CGAAGGCATT-GTGCGAGTAC-TAAATCC-GGGTTAAGTCC
*
17668181 CGAAGGCATTGTGTGAGT
1 CGAAGGCATTGTGCGAGT
17668199 TACTGAAAAC
Statistics
Matches: 83, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
38 8 0.10
39 39 0.47
40 30 0.36
41 6 0.07
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (38 bp):
CGAAGGCATTGTGCGAGTACTAAATCCGGGTTAAGTCC
Found at i:17678823 original size:38 final size:37
Alignment explanation
Indices: 17678770--17678895 Score: 116
Period size: 38 Copynumber: 3.4 Consensus size: 37
17678760 GGACTAAGAT
*
17678770 CCGAAGG-CTTGTGCGAGATAC-AAGT-CGGGTTAAGCC
1 CCGAAGGCCTTGTGCGAGA-ACTAAATCCGGGTTAAG-C
*
17678806 CCGAAGGCCTTTGTGCGAGAACTAAATCCGGGTTAAGT
1 CCGAAGGCC-TTGTGCGAGAACTAAATCCGGGTTAAGC
* * * *
17678844 CCGAAGGCATTCTGCGAGTCATTAAATCC-GGTTAAGTC
1 CCGAAGGCCTTGTGCGAG-AACTAAATCCGGGTTAAG-C
*
17678882 CCGAAGGCATTGTG
1 CCGAAGGCCTTGTG
17678896 TGAGTTACTA
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
36 7 0.09
37 18 0.24
38 42 0.55
39 9 0.12
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.23
Consensus pattern (37 bp):
CCGAAGGCCTTGTGCGAGAACTAAATCCGGGTTAAGC
Found at i:17678877 original size:37 final size:38
Alignment explanation
Indices: 17678797--17678930 Score: 137
Period size: 38 Copynumber: 3.5 Consensus size: 38
17678787 ATACAAGTCG
* * * *
17678797 GGTTAAGCCCCGAAGGCCTTTGTGCGAG-AACTAAATCC
1 GGTTAAGTCCCGAAGG-CATTCTGCGAGTCACTAAATCC
*
17678835 GGGTTAAGT-CCGAAGGCATTCTGCGAGTCATTAAATCC
1 -GGTTAAGTCCCGAAGGCATTCTGCGAGTCACTAAATCC
* * * *
17678873 GGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACC
1 GGTTAAGTCCCGAAGGCATTCTGCGAGTCACTAAATCC
* *
17678911 GGCTATGTCCCGAAGGCATT
1 GGTTAAGTCCCGAAGGCATT
17678931 TGAACAGAGC
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
37 17 0.21
38 57 0.70
39 7 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (38 bp):
GGTTAAGTCCCGAAGGCATTCTGCGAGTCACTAAATCC
Found at i:17698182 original size:23 final size:22
Alignment explanation
Indices: 17698139--17698182 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
17698129 TTTCAAGTCA
17698139 ATATTCAATTCAATTCCACACAT
1 ATATTCAATTCAATT-CACACAT
17698162 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
17698183 TTAATCGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACAT
Found at i:17698339 original size:45 final size:45
Alignment explanation
Indices: 17698252--17698493 Score: 227
Period size: 45 Copynumber: 5.2 Consensus size: 45
17698242 AATAATAACA
* * * * * *
17698252 GATACACGGTGG-ATCTGCACACAGC-ACCACCCTTACAGTCAAT
1 GATACTCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
*
17698295 GATATTCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
1 GATACTCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * *
17698340 GGTACCCGGTGGAATCAGTACATAGCAACCACCTTTATAATCAAT
1 GATACTCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * * *
17698385 GGTACCCAGTGGAATCAGCACATAGCAACCACCTTTATAATTAAT
1 GATACTCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
* * * *
17698430 GGTACCCAATTTACCCGGTGGAATCAGCACATAGCAACCATCGTTACAATCAAT
1 -G------A--TACTCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
17698484 GATACTCGGT
1 GATACTCGGT
17698494 ACACGTAGTA
Statistics
Matches: 167, Mismatches: 21, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
43 10 0.06
44 11 0.07
45 105 0.63
46 1 0.01
47 1 0.01
53 1 0.01
54 38 0.23
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (45 bp):
GATACTCGGTGGAATCAGCACATAGCAACCACCTTTATAATCAAT
Found at i:17702618 original size:38 final size:37
Alignment explanation
Indices: 17702549--17702621 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
17702539 TTTTCATAAT
* *
17702549 TTCACTTTTTCACTTTTAATCATTATTCAATTCAAAA
1 TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
17702586 TTCACTTTTCCA-TTTTCAAGTCAATATTCAATTCAA
1 TTCACTTTTCCACTTTT-AA-TCAATATTCAATTCAA
17702622 TTCCACACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 4 0.12
37 13 0.41
38 15 0.47
ACGTcount: A:0.32, C:0.21, G:0.01, T:0.47
Consensus pattern (37 bp):
TTCACTTTTCCACTTTTAATCAATATTCAATTCAAAA
Found at i:17702815 original size:45 final size:45
Alignment explanation
Indices: 17702730--17702911 Score: 233
Period size: 45 Copynumber: 4.1 Consensus size: 45
17702720 AACAGATACA
* * * **
17702730 CGGTGG-ATCAGCACACAAC-ACCACCCTTATGGTCAATGGTACC
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGGTACC
* * *
17702773 CAGTGAAATCAGCACATAGCAAACACCTTTATAATCAATGGTACC
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGGTACC
17702818 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGGTACC
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGGTACC
* * * * *
17702863 CGGTGGAATCAGCACATAACAACCACCGTTACAATCAATGATACT
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGGTACC
17702908 CGGT
1 CGGT
17702912 ACACGTAGTA
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
43 4 0.03
44 11 0.09
45 106 0.88
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGGTACC
Found at i:17706052 original size:27 final size:27
Alignment explanation
Indices: 17706022--17706273 Score: 197
Period size: 27 Copynumber: 9.4 Consensus size: 27
17706012 GGTATAACGG
*
17706022 TCATTTTACCCTAT-AGAGGTATTTTGA
1 TCATTTTACCCTTTGAG-GGTATTTTGA
* * *
17706049 TCATTTTA-CCTTCGGGGGTA-TTTCA
1 TCATTTTACCCTTTGAGGGTATTTTGA
* * * *
17706074 CTTATTTTACCTTTTGAGGGCATTTTAA
1 -TCATTTTACCCTTTGAGGGTATTTTGA
* * *
17706102 TAATTTTACCCTTCGAGGGTATTTCGA
1 TCATTTTACCCTTTGAGGGTATTTTGA
*
17706129 TCATTTTACCCTTTGAGGGTATTTCGA
1 TCATTTTACCCTTTGAGGGTATTTTGA
* * *
17706156 TAATTTTACCCTTTGAGGGTATTTCGG
1 TCATTTTACCCTTTGAGGGTATTTTGA
* * * * * *
17706183 TAACTTAACCATTCGAGGGTATTTCGA
1 TCATTTTACCCTTTGAGGGTATTTTGA
* * * *
17706210 TAATTTTACCATTCGAGGGTATTTTGG
1 TCATTTTACCCTTTGAGGGTATTTTGA
* *
17706237 T-AGTTTTGCCCTTTGAGGGTATTTTAA
1 TCA-TTTTACCCTTTGAGGGTATTTTGA
*
17706264 TAATTTTACC
1 TCATTTTACC
17706274 ATTATGGCCT
Statistics
Matches: 184, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
25 4 0.02
26 15 0.08
27 160 0.87
28 5 0.03
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTTTGAGGGTATTTTGA
Found at i:17706136 original size:54 final size:53
Alignment explanation
Indices: 17706024--17706273 Score: 254
Period size: 54 Copynumber: 4.7 Consensus size: 53
17706014 TATAACGGTC
* * *
17706024 ATTTTACCCTAT-AGAGGTATTTTGATCATTTTA-CCTTCGGGGGTATTTC-ACTT
1 ATTTTACCCTTTGAG-GGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGA--T
* * *
17706077 ATTTTACCTTTTGAGGGCATTTTAATAATTTTACCCTTCGAGGGTATTTCGAT
1 ATTTTACCCTTTGAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGAT
* * *
17706130 CATTTTACCCTTTGAGGGTATTTCGATAATTTTACCCTTTGAGGGTATTTCGGT
1 -ATTTTACCCTTTGAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGAT
* * * * * * * *
17706184 AACTTAACCATTCGAGGGTATTTCGATAATTTTACCATTCGAGGGTATTTTGGT
1 -ATTTTACCCTTTGAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGAT
* *
17706238 AGTTTTGCCCTTTGAGGGTATTTTAATAATTTTACC
1 A-TTTTACCCTTTGAGGGTATTTTGATAATTTTACC
17706274 ATTATGGCCT
Statistics
Matches: 165, Mismatches: 27, Indels: 9
0.82 0.13 0.04
Matches are distributed among these distances:
53 27 0.16
54 137 0.83
55 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (53 bp):
ATTTTACCCTTTGAGGGTATTTTGATAATTTTACCCTTCGAGGGTATTTCGAT
Found at i:17706198 original size:81 final size:81
Alignment explanation
Indices: 17706039--17706276 Score: 264
Period size: 81 Copynumber: 3.0 Consensus size: 81
17706029 ACCCTATAGA
* * * * * *
17706039 GGTATTTTGATCATTTTA-CCTTCGGGGGTATTTC-ACTTATTTTACCTTTTGAGGGCATTTTAA
1 GGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGA-TAATTTTACCCTTTGAGGGTATTTCAA
* * *
17706102 TAATTTTACCCTTCGAG
65 TAACTTAACCATTCGAG
* **
17706119 GGTATTTCGATCATTTTACCCTTTGAGGGTATTTCGATAATTTTACCCTTTGAGGGTATTTCGGT
1 GGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTTGAGGGTATTTCAAT
17706184 AACTTAACCATTCGAG
66 AACTTAACCATTCGAG
* * * * * * *
17706200 GGTATTTCGATAATTTTACCATTCGAGGGTATTTTGGTAGTTTTGCCCTTTGAGGGTATTTTAAT
1 GGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTTGAGGGTATTTCAAT
* *
17706265 AATTTTACCATT
66 AACTTAACCATT
17706277 ATGGCCTAAG
Statistics
Matches: 132, Mismatches: 24, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
80 17 0.13
81 114 0.86
82 1 0.01
ACGTcount: A:0.21, C:0.15, G:0.19, T:0.45
Consensus pattern (81 bp):
GGTATTTCGATCATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCTTTGAGGGTATTTCAAT
AACTTAACCATTCGAG
Found at i:17730132 original size:12 final size:13
Alignment explanation
Indices: 17730110--17730138 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
17730100 ACCAAATGAA
17730110 AAAACATAAAAAT
1 AAAACATAAAAAT
17730123 AAAA-ATAAAAAT
1 AAAACATAAAAAT
17730135 AAAA
1 AAAA
17730139 TTGACTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAACATAAAAAT
Found at i:17736876 original size:21 final size:22
Alignment explanation
Indices: 17736852--17736904 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
17736842 AAATTTGTCG
*
17736852 AAATTAAATA-AAAATTTATGA
1 AAATTAAATATAAAATTAATGA
* *
17736873 AAATT-TATATAAAATTAATTA
1 AAATTAAATATAAAATTAATGA
17736894 AAATTAAATAT
1 AAATTAAATAT
17736905 GTTAATAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 3 0.12
21 19 0.73
22 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATTAAATATAAAATTAATGA
Found at i:17741968 original size:29 final size:29
Alignment explanation
Indices: 17741905--17741972 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
17741895 TAATCAACCA
17741905 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
17741934 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
17741963 CGCACACTTA
1 CGCACACTTA
17741973 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:17742091 original size:174 final size:175
Alignment explanation
Indices: 17741793--17742121 Score: 554
Period size: 174 Copynumber: 1.9 Consensus size: 175
17741783 AACTCAAGGT
* *
17741793 ACTTACCTTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTTA
1 ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTTA
* *
17741858 TAGAAAATATATATTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATG
66 TAGAAAATATATATTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATG
17741923 CACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 CACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
17741968 ACTTACC-TTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAA-TTTA
1 ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTTA
* *
17742031 TAGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCAT
66 TAGAAAATATATATTGGGTT-GCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCAT
* **
17742096 GTACTTTAAACTCGGACACTTAGTGC
130 GCACTTTAAACTCACACACTTAGTGC
17742122 TGTACAATTT
Statistics
Matches: 144, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
173 24 0.17
174 113 0.78
175 7 0.05
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (175 bp):
ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTTA
TAGAAAATATATATTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATG
CACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:17742116 original size:29 final size:30
Alignment explanation
Indices: 17742074--17742152 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
17742064 CTTAATAATC
17742074 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
* *
17742104 AACTCGGACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
17742133 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
17742153 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 31 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:17747982 original size:15 final size:15
Alignment explanation
Indices: 17747962--17747995 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
17747952 TCACATACCT
17747962 CATAATAACTCCTAC
1 CATAATAACTCCTAC
17747977 CATAATAACTCCTAC
1 CATAATAACTCCTAC
17747992 CATA
1 CATA
17747996 TGCATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.32, G:0.00, T:0.26
Consensus pattern (15 bp):
CATAATAACTCCTAC
Found at i:17759421 original size:56 final size:50
Alignment explanation
Indices: 17759335--17759626 Score: 225
Period size: 50 Copynumber: 5.8 Consensus size: 50
17759325 GACATTAGGG
*
17759335 GATGAGA--TCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCATTGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCATC---GA
* * ** *
17759386 GGTTATGAGAGGTCCCACGTAAGACCATATTTGGGACATGGTGTTGGCATCGA
1 -G--ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCATCGA
* * * *
17759439 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCGTTGGCACCGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCATCGA
* * * ** * *
17759489 GATGAGATGTCCCCCGTAAGACCATGTCTGGTACATGGCATGGGAACCGA
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCATCGA
* ** * * * *
17759539 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCAGTAC-A
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCA-T-CGA
* ** *
17759590 G--GAAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGC
17759627 TTTGGCATGT
Statistics
Matches: 201, Mismatches: 33, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
49 31 0.15
50 125 0.62
51 1 0.00
52 3 0.01
53 2 0.01
54 6 0.03
56 33 0.16
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.23
Consensus pattern (50 bp):
GATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGCATTAGCATCGA
Found at i:17759448 original size:50 final size:50
Alignment explanation
Indices: 17759390--17759633 Score: 231
Period size: 50 Copynumber: 4.9 Consensus size: 50
17759380 CATTGAGGTT
* * *
17759390 ATGAGAGGTCCCACGTAAGACCATATTTGGGACATGGTGTTGGCATCGAG
1 ATGAGAGGTCCCACGTAAGACCATATCTGGGACATGGCGTTGGCACCGAG
* *
17759440 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATATCTGGGACATGGCGTTGGCACCGAG
* * * * * * * *
17759490 ATGAGATGTCCCCCGTAAGACCATGTCTGGTACATGGCATGGGAACCGAT
1 ATGAGAGGTCCCACGTAAGACCATATCTGGGACATGGCGTTGGCACCGAG
** * * * *
17759540 ATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA--GTAC
1 ATGAGAGGTCCCACGTAAGACCATATCTGGGACATGGCGTTGGCACCG-AG
* * ** * * *
17759589 AGGAAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATGAGAGGTCCCACGTAAGACCATATCTGGGACATGGCGTTGGCA
17759634 TGTTATTATC
Statistics
Matches: 165, Mismatches: 28, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
48 1 0.01
49 39 0.24
50 125 0.76
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATATCTGGGACATGGCGTTGGCACCGAG
Found at i:17759544 original size:100 final size:104
Alignment explanation
Indices: 17759335--17759584 Score: 251
Period size: 100 Copynumber: 2.4 Consensus size: 104
17759325 GACATTAGGG
* * *
17759335 GATGAG-A-TCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCATTGAGGTTATGAGAGG
1 GATGAGAACTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAGG-TATGAGAGG
* ** * * *
17759398 TCCCACGTAAGACCATATTTGGGACATGGTGTTGGCATCGA
64 TCCCACGTAAGACCATATCTGGGACATGGCATGGGAACCGA
** * * *
17759439 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CGA-G-ATGAGATGTC
1 GATGAGAACTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGGTATGAGAGGTC
* * *
17759500 CCCCGTAAGACCATGTCTGGTACATGGCATGGGAACCGA
66 CCACGTAAGACCATATCTGGGACATGGCATGGGAACCGA
* * * *
17759539 TATGAGAACTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 GATGAGAACTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
17759585 GTACAGGAAA
Statistics
Matches: 120, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
100 77 0.64
102 1 0.01
103 2 0.02
104 6 0.05
105 1 0.01
106 33 0.28
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (104 bp):
GATGAGAACTCCCACGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGGTATGAGAGGTC
CCACGTAAGACCATATCTGGGACATGGCATGGGAACCGA
Found at i:17759859 original size:20 final size:20
Alignment explanation
Indices: 17759834--17759882 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
17759824 TGAGTTATTT
17759834 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
17759854 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
17759874 AAG-AAGCAA
1 AAGTAAGCAA
17759883 AGACATGATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:17770411 original size:28 final size:30
Alignment explanation
Indices: 17770374--17770443 Score: 99
Period size: 28 Copynumber: 2.4 Consensus size: 30
17770364 GTCTGGGCCG
*
17770374 AGCCCTATACAGCAACAGTGT-T-GGCCTT
1 AGCCCAATACAGCAACAGTGTGTGGGCCTT
*
17770402 AGCCCAATACAGTAACAGTGTGTGGGCCTT
1 AGCCCAATACAGCAACAGTGTGTGGGCCTT
*
17770432 AGCCCAAAACAG
1 AGCCCAATACAG
17770444 TAATAGTGCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 19 0.51
29 1 0.03
30 17 0.46
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (30 bp):
AGCCCAATACAGCAACAGTGTGTGGGCCTT
Found at i:17770432 original size:30 final size:28
Alignment explanation
Indices: 17770374--17770451 Score: 102
Period size: 30 Copynumber: 2.7 Consensus size: 28
17770364 GTCTGGGCCG
* *
17770374 AGCCCTATACAGCAACAGTGTTGGCCTT
1 AGCCCAATACAGTAACAGTGTTGGCCTT
17770402 AGCCCAATACAGTAACAGTGTGTGGGCCTT
1 AGCCCAATACAGTAACAGTGT-T-GGCCTT
* *
17770432 AGCCCAAAACAGTAATAGTG
1 AGCCCAATACAGTAACAGTG
17770452 CAATGCAGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 19 0.43
29 1 0.02
30 24 0.55
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (28 bp):
AGCCCAATACAGTAACAGTGTTGGCCTT
Found at i:17770591 original size:26 final size:25
Alignment explanation
Indices: 17770558--17770627 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
17770548 ACCAATATCC
* *
17770558 CAGCAAAGCTGCCAGTAATAGTGATG
1 CAGCAAAGCTGCCAGTAA-AGTAACG
* *
17770584 CAGTAAAGTTGCCAGTGAAAGTAACG
1 CAGCAAAGCTGCCAGT-AAAGTAACG
*
17770610 CAGCAAAGCTACCAGTAA
1 CAGCAAAGCTGCCAGTAA
17770628 CAGAATATGT
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
25 2 0.06
26 32 0.89
27 2 0.06
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.17
Consensus pattern (25 bp):
CAGCAAAGCTGCCAGTAAAGTAACG
Found at i:17770854 original size:27 final size:27
Alignment explanation
Indices: 17770808--17771164 Score: 235
Period size: 27 Copynumber: 13.3 Consensus size: 27
17770798 GTATAACAGA
* *
17770808 CATTTTACCC-TTCGAGGGTATTTTAGT
1 CATTTTACCCTTTGGA-GGTATTTTGGT
*
17770835 CATTTTACCCTTTGGAGGTATTTCGGT
1 CATTTTACCCTTTGGAGGTATTTTGGT
** ** * ***
17770862 CATTTTATACTTCAGTGGTATTTCAAT
1 CATTTTACCCTTTGGAGGTATTTTGGT
* * * *
17770889 CATTTTACCCGTCGGGGGTATTTCGGT
1 CATTTTACCCTTTGGAGGTATTTTGGT
* *
17770916 CATTTTACCCTTT-TAGGGTATTTTAGT
1 CATTTTACCCTTTGGA-GGTATTTTGGT
* * *
17770943 CATTTTACCCTTCGAAGGTATTTCGGT
1 CATTTTACCCTTTGGAGGTATTTTGGT
* *
17770970 TATTTTACCC-TTCGAGGGTATTTTGGT
1 CATTTTACCCTTTGGA-GGTATTTTGGT
* * *
17770997 TATTTTACCCTTTGG-GGTATTTCGAT
1 CATTTTACCCTTTGGAGGTATTTTGGT
* * *
17771023 CATTTTACCC-TTCGAGGTTATTTCGAT
1 CATTTTACCCTTTGGAGG-TATTTTGGT
*** *
17771050 CATTTTACCCTTCAAAGGTATTTTAGT
1 CATTTTACCCTTTGGAGGTATTTTGGT
** * *
17771077 TGTTTTACCCTTTAGG-GGTATTTCGAT
1 CATTTTACCCTTT-GGAGGTATTTTGGT
*
17771104 CATTTTACCCTTTAGG-GGTATTTCGGT
1 CATTTTACCCTTT-GGAGGTATTTTGGT
* * *
17771131 CATTTTACCC-TTCGAGGGTATTTCGAT
1 CATTTTACCCTTTGGA-GGTATTTTGGT
17771158 CATTTTA
1 CATTTTA
17771165 GGCCTATTAG
Statistics
Matches: 263, Mismatches: 56, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
25 4 0.02
26 24 0.09
27 223 0.85
28 12 0.05
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (27 bp):
CATTTTACCCTTTGGAGGTATTTTGGT
Found at i:17770936 original size:81 final size:79
Alignment explanation
Indices: 17770808--17771164 Score: 410
Period size: 81 Copynumber: 4.4 Consensus size: 79
17770798 GTATAACAGA
* * * **
17770808 CATTTTACCCTTCGAGGGTATTTTAGTCATTTTACCCTTTGGAGGTATTTCGGTCATTTTATACT
1 CATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTTAG-GGTATTTCGATCATTTTACCCT
*
17770873 TCAGTGGTATTTCAAT
65 TCAG-GGTATTTCGAT
* * * *
17770889 CATTTTACCCGTCGGGGGTATTTCGGTCATTTTACCCTTTTAGGGTATTT-TAGTCATTTTACCC
1 CATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCC-TTTAGGGTATTTCGA-TCATTTTACCC
* *
17770953 TTCGAAGGTATTTCGGT
64 TTC-AGGGTATTTCGAT
* * *
17770970 TATTTTACCCTTCGAGGGTATTTTGGTTATTTTACCCTTTGGGGTATTTCGATCATTTTACCCTT
1 CATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTTAGGGTATTTCGATCATTTTACCCTT
*
17771035 CGAGGTTATTTCGAT
66 C-AGGGTATTTCGAT
* * * **
17771050 CATTTTACCCTTCAAAGGTATTTTAGTTGTTTTACCCTTTAGGGGTATTTCGATCATTTTACCCT
1 CATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTTA-GGGTATTTCGATCATTTTACCCT
* *
17771115 TTAGGGGTATTTCGGT
65 TCA-GGGTATTTCGAT
* *
17771131 CATTTTACCCTTCGAGGGTATTTCGATCATTTTA
1 CATTTTACCCTTCGAGGGTATTTTGGTCATTTTA
17771165 GGCCTATTAG
Statistics
Matches: 232, Mismatches: 38, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
80 72 0.31
81 155 0.67
82 5 0.02
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (79 bp):
CATTTTACCCTTCGAGGGTATTTTGGTCATTTTACCCTTTAGGGTATTTCGATCATTTTACCCTT
CAGGGTATTTCGAT
Found at i:17771154 original size:54 final size:53
Alignment explanation
Indices: 17770808--17771164 Score: 380
Period size: 54 Copynumber: 6.6 Consensus size: 53
17770798 GTATAACAGA
*
17770808 CATTTTACCCTTCGAGGGTATTT-TAGTCATTTTACCCTTTGGAGGTATTTCGGT
1 CATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTTTGG-GGTATTTCGGT
** * **
17770862 CATTTTATACTTC-AGTGGTATTTCAATCATTTTACCCGTCGGGGGTATTTCGGT
1 CATTTTACCCTTCGAG-GGTATTTCGATCATTTTACCC-TTTGGGGTATTTCGGT
** * * *
17770916 CATTTTACCCTTTTAGGGTATTT-TAGTCATTTTACCCTTCGAAGGTATTTCGGT
1 CATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCCTTTG-GGGTATTTCGGT
* * * * *
17770970 TATTTTACCCTTCGAGGGTATTTTGGTTATTTTACCCTTTGGGGTATTTCGAT
1 CATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGTATTTCGGT
* *** **
17771023 CATTTTACCCTTCGAGGTTATTTCGATCATTTTACCCTTCAAAGGTATTTTAGT
1 CATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTT-TGGGGTATTTCGGT
** *
17771077 TGTTTTACCCTT-TAGGGGTATTTCGATCATTTTACCCTTTAGGGGTATTTCGGT
1 CATTTTACCCTTCGA-GGGTATTTCGATCATTTTACCCTTT-GGGGTATTTCGGT
17771131 CATTTTACCCTTCGAGGGTATTTCGATCATTTTA
1 CATTTTACCCTTCGAGGGTATTTCGATCATTTTA
17771165 GGCCTATTAG
Statistics
Matches: 248, Mismatches: 44, Indels: 22
0.79 0.14 0.07
Matches are distributed among these distances:
53 50 0.20
54 191 0.77
55 7 0.03
ACGTcount: A:0.18, C:0.18, G:0.18, T:0.45
Consensus pattern (53 bp):
CATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCTTTGGGGTATTTCGGT
Found at i:17778498 original size:27 final size:27
Alignment explanation
Indices: 17778468--17778805 Score: 359
Period size: 27 Copynumber: 12.6 Consensus size: 27
17778458 TTCTAGGGGC
* *
17778468 ATTTCGGTCATTTTACCCTTCAAGGGT
1 ATTTCAGTCATTTTACCCTTCGAGGGT
* *
17778495 ATTTCGGTCATTTTATCCTTC-AGGGGT
1 ATTTCAGTCATTTTACCCTTCGA-GGGT
* *
17778522 ATTTCAGTCATTTTACCCTTCGGGGGA
1 ATTTCAGTCATTTTACCCTTCGAGGGT
* *
17778549 ATTTTTA-TCATTTTACCTTTCGAGGGT
1 A-TTTCAGTCATTTTACCCTTCGAGGGT
* *
17778576 ATTTCAGTTATTTTACCCTTCGAGGCT
1 ATTTCAGTCATTTTACCCTTCGAGGGT
* *
17778603 ATTTC-GATCATTTTATCCTTTG-GGAGT
1 ATTTCAG-TCATTTTACCCTTCGAGG-GT
**
17778630 ATTTCAGTCATTTT-CCCTTCGAGTTT
1 ATTTCAGTCATTTTACCCTTCGAGGGT
*
17778656 ATTTCAGTTATTTTACCCTTC-ATGGGT
1 ATTTCAGTCATTTTACCCTTCGA-GGGT
**
17778683 ATTTCAGTCATTTTA-CCTTTTAGGGGT
1 ATTTCAGTCATTTTACCCTTCGA-GGGT
17778710 ATTTCAGTCATTTTACCCTTCGAGGGT
1 ATTTCAGTCATTTTACCCTTCGAGGGT
*
17778737 ATTTC-GATCATTTTACCCTTTGAGGGT
1 ATTTCAG-TCATTTTACCCTTCGAGGGT
* *
17778764 ATTTTAGTCATTTTACCCTTCGAGTGT
1 ATTTCAGTCATTTTACCCTTCGAGGGT
**
17778791 ATTTTGGTCATTTTA
1 ATTTCAGTCATTTTA
17778806 GACCCATGAA
Statistics
Matches: 263, Mismatches: 34, Indels: 28
0.81 0.10 0.09
Matches are distributed among these distances:
26 33 0.13
27 219 0.83
28 11 0.04
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (27 bp):
ATTTCAGTCATTTTACCCTTCGAGGGT
Found at i:17778697 original size:134 final size:135
Alignment explanation
Indices: 17778468--17778805 Score: 434
Period size: 134 Copynumber: 2.5 Consensus size: 135
17778458 TTCTAGGGGC
* ** * * *
17778468 ATTTCGGTCATTTTACCCTTCAAGGGTATTTCGGTCATTTTATCCTTC-AGGGGTATTTCAGTCA
1 ATTTCGATCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGA-GTGTATTTCAGTCA
* * *
17778532 TTTTACCCTTCGGGGGAATTTTTATCATTTTACCTTTCGA-GGGTATTTCAGTTATTTTACCCTT
65 TTTTACCCTTCAGGGGAATTTTCATCATTTTACCTTT-GAGGGGTATTTCAGTCATTTTACCCTT
17778596 CGAGGCT
129 CGAGGCT
* * *
17778603 ATTTCGATCATTTTATCCTTTG-GGAGTATTTCAGTCATTTT-CCCTTCGAGTTTATTTCAGTTA
1 ATTTCGATCATTTTACCCTTTGAGG-GTATTTCAGTCATTTTACCCTTCGAGTGTATTTCAGTCA
* * *
17778666 TTTTACCCTTCATGGGTA-TTTCAGTCATTTTACCTTTTAGGGGTATTTCAGTCATTTTACCCTT
65 TTTTACCCTTCAGGGGAATTTTCA-TCATTTTACCTTTGAGGGGTATTTCAGTCATTTTACCCTT
*
17778730 CGAGGGT
129 CGAGGCT
* **
17778737 ATTTCGATCATTTTACCCTTTGAGGGTATTTTAGTCATTTTACCCTTCGAGTGTATTTTGGTCAT
1 ATTTCGATCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGTGTATTTCAGTCAT
17778802 TTTA
66 TTTA
17778806 GACCCATGAA
Statistics
Matches: 175, Mismatches: 22, Indels: 12
0.84 0.11 0.06
Matches are distributed among these distances:
133 5 0.03
134 111 0.63
135 59 0.34
ACGTcount: A:0.18, C:0.19, G:0.17, T:0.46
Consensus pattern (135 bp):
ATTTCGATCATTTTACCCTTTGAGGGTATTTCAGTCATTTTACCCTTCGAGTGTATTTCAGTCAT
TTTACCCTTCAGGGGAATTTTCATCATTTTACCTTTGAGGGGTATTTCAGTCATTTTACCCTTCG
AGGCT
Found at i:17782380 original size:16 final size:16
Alignment explanation
Indices: 17782359--17782396 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
17782349 ACATTGGAGC
*
17782359 ATTTGACTTGATGAGG
1 ATTTGACATGATGAGG
*
17782375 ATTTGACATGATGAGT
1 ATTTGACATGATGAGG
17782391 ATTTGA
1 ATTTGA
17782397 TGTGAACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.29, C:0.05, G:0.26, T:0.39
Consensus pattern (16 bp):
ATTTGACATGATGAGG
Found at i:17784709 original size:36 final size:36
Alignment explanation
Indices: 17784669--17784741 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
17784659 ATAAAATCAT
17784669 TCTCATAGTATAGAGCATTATAAAAGTAAAAAATAA
1 TCTCATAGTATAGAGCATTATAAAAGTAAAAAATAA
* * *
17784705 TCTCATAGTATGGAGCATTATAAATGTCAAAAATAA
1 TCTCATAGTATAGAGCATTATAAAAGTAAAAAATAA
17784741 T
1 T
17784742 TTAAGGGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (36 bp):
TCTCATAGTATAGAGCATTATAAAAGTAAAAAATAA
Found at i:17788900 original size:13 final size:13
Alignment explanation
Indices: 17788882--17788906 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17788872 AGTTTTAGTC
17788882 TCATAATTAATTT
1 TCATAATTAATTT
17788895 TCATAATTAATT
1 TCATAATTAATT
17788907 CATTCTTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
TCATAATTAATTT
Found at i:17793124 original size:74 final size:71
Alignment explanation
Indices: 17793028--17793170 Score: 205
Period size: 74 Copynumber: 2.0 Consensus size: 71
17793018 TGTAATAGCC
* *
17793028 CCTTTCCTTGGGACATCCTTATTTGCTTGGGCTAAGACATTAACATGTTGGAAAAGTACGGTGAT
1 CCTTTCCTTGGGACATCCTTATTTGCTTGGGCTAAGACATTAACATGCTAGAAAAGTACGGTGAT
17793093 TAAACT
66 TAAACT
* * * *
17793099 CCTTTCCTTGGGATGACTTCCTTATTTTCTTGGGTTAAGACATTAACATGCTAGCAAAGTACGGT
1 CCTTTCCTT-GG--GACATCCTTATTTGCTTGGGCTAAGACATTAACATGCTAGAAAAGTACGGT
17793164 GATTAAA
63 GATTAAA
17793171 GAAGGAAAGT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 9 0.14
72 2 0.03
74 52 0.83
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (71 bp):
CCTTTCCTTGGGACATCCTTATTTGCTTGGGCTAAGACATTAACATGCTAGAAAAGTACGGTGAT
TAAACT
Found at i:17807371 original size:29 final size:28
Alignment explanation
Indices: 17807279--17807476 Score: 204
Period size: 29 Copynumber: 6.8 Consensus size: 28
17807269 GTGTGCTAAA
* * *
17807279 CGATGGTCAAAACCATCCTTTTTCTTTAATT
1 CGATGGTC-GAACCATCCCTTTTC-AT-ATT
*
17807310 -GATGGCCGAAACCATCCC-TTTCATATT
1 CGATGGTCG-AACCATCCCTTTTCATATT
17807337 CGATGGTCGAAGCCATCCCTTTTCATATT
1 CGATGGTCGAA-CCATCCCTTTTCATATT
* *
17807366 CAATGGTCGAAGCCACCCCTTTTCATATT
1 CGATGGTCGAA-CCATCCCTTTTCATATT
*
17807395 CGATGGTTGACACCATCCCTTTTCATATT
1 CGATGGTCGA-ACCATCCCTTTTCATATT
*
17807424 CGATGGTCGTCACCA-CCTCTTTTCATATT
1 CGATGGTCG-AACCATCC-CTTTTCATATT
*
17807453 CGATGGTCGAAACCACCCCTTTTC
1 CGATGGTCG-AACCATCCCTTTTC
17807477 TTTAATCGAT
Statistics
Matches: 145, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
27 5 0.03
28 17 0.12
29 106 0.73
30 17 0.12
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.34
Consensus pattern (28 bp):
CGATGGTCGAACCATCCCTTTTCATATT
Found at i:17813317 original size:29 final size:29
Alignment explanation
Indices: 17813280--17813369 Score: 137
Period size: 29 Copynumber: 3.1 Consensus size: 29
17813270 TTTATCATCC
*
17813280 TTCATATTCGATTGTTGATACCATCCCTT
1 TTCATATTCGATGGTTGATACCATCCCTT
*
17813309 TTCATATTCGATGGTCG-TCACCATCCCTT
1 TTCATATTCGATGGTTGAT-ACCATCCCTT
*
17813338 TTCATATTCGATGGTTGAAACCATCCCTT
1 TTCATATTCGATGGTTGATACCATCCCTT
17813367 TTC
1 TTC
17813370 TTTAATCGAT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
28 1 0.02
29 54 0.98
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.41
Consensus pattern (29 bp):
TTCATATTCGATGGTTGATACCATCCCTT
Found at i:17820359 original size:26 final size:26
Alignment explanation
Indices: 17820321--17820371 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
17820311 TTGCCACATT
17820321 TACTATTACTGGCAG-CTTCGCTGCGA
1 TACTATTACTGGCAGCCTT-GCTGCGA
*
17820347 TACTATTATTGGCAGCCTTGCTGCG
1 TACTATTACTGGCAGCCTTGCTGCG
17820372 GTATTGGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (26 bp):
TACTATTACTGGCAGCCTTGCTGCGA
Found at i:17827409 original size:26 final size:26
Alignment explanation
Indices: 17827356--17827409 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
17827346 AAATAAAATC
*
17827356 ATAAAAAATTAAAAAAAAATAATTAA
1 ATAAAAAATTAAAAAAAAATAATCAA
* *
17827382 ATAAAGAA-TAAAAATAAATAAATCAA
1 ATAAAAAATTAAAAAAAAAT-AATCAA
17827408 AT
1 AT
17827410 TCAAGAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (26 bp):
ATAAAAAATTAAAAAAAAATAATCAA
Found at i:17832146 original size:20 final size:20
Alignment explanation
Indices: 17832095--17832207 Score: 111
Period size: 20 Copynumber: 5.7 Consensus size: 20
17832085 CATAATAGGA
* * *
17832095 GCACTGAAGTGTAGACAGGG
1 GCACCGAAGTGCAAACAGGG
*
17832115 GCA-CAAATGTGCAAACAGGG
1 GCACCGAA-GTGCAAACAGGG
* *
17832135 GCACCGTAGTGCGAACAGGG
1 GCACCGAAGTGCAAACAGGG
* * * *
17832155 ACACTGAAGTGTATACAGGG
1 GCACCGAAGTGCAAACAGGG
*
17832175 GTACCGAAGTGCAAACAGGG
1 GCACCGAAGTGCAAACAGGG
17832195 GCACCGAAGTGCA
1 GCACCGAAGTGCA
17832208 GATCTCATAC
Statistics
Matches: 72, Mismatches: 19, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
19 2 0.03
20 68 0.94
21 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.35, T:0.12
Consensus pattern (20 bp):
GCACCGAAGTGCAAACAGGG
Found at i:17832990 original size:28 final size:29
Alignment explanation
Indices: 17832958--17833013 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 29
17832948 TACTTATAAA
17832958 TAACAACTAATACTT-CAAA-TTCATCATT
1 TAACAACTAA-ACTTACAAAGTTCATCATT
*
17832986 TAACATCTAAACTTACAAAGGTTCATCA
1 TAACAACTAAACTTACAAA-GTTCATCA
17833014 AAGGCAACAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.17
28 13 0.54
30 7 0.29
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (29 bp):
TAACAACTAAACTTACAAAGTTCATCATT
Found at i:17833684 original size:14 final size:14
Alignment explanation
Indices: 17833665--17833691 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
17833655 CATATTTGAC
17833665 TAGTAAATATTTAA
1 TAGTAAATATTTAA
17833679 TAGTAAATATTTA
1 TAGTAAATATTTA
17833692 CAGACTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (14 bp):
TAGTAAATATTTAA
Found at i:17839051 original size:20 final size:20
Alignment explanation
Indices: 17839028--17839065 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
17839018 TGAAAAAGGG
17839028 GCAAAAATCAAAAAATCAAA
1 GCAAAAATCAAAAAATCAAA
**
17839048 GCAAACTTCAAAAAATCA
1 GCAAAAATCAAAAAATCA
17839066 CATTTTTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.18, G:0.05, T:0.13
Consensus pattern (20 bp):
GCAAAAATCAAAAAATCAAA
Found at i:17840477 original size:25 final size:25
Alignment explanation
Indices: 17840448--17840507 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
17840438 AGCTTGCTTG
* * * *
17840448 AGCTTACCGTTATTCAGCTCGAAGG
1 AGCTTACCATCATTCAACTCGAAGA
*
17840473 TGCTTACCATCATTCAACTCGAAGA
1 AGCTTACCATCATTCAACTCGAAGA
17840498 AGCTTACCAT
1 AGCTTACCAT
17840508 TTATAGCTCG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (25 bp):
AGCTTACCATCATTCAACTCGAAGA
Found at i:17844402 original size:23 final size:24
Alignment explanation
Indices: 17844368--17844418 Score: 95
Period size: 23 Copynumber: 2.2 Consensus size: 24
17844358 AATTTTCCAA
17844368 AAAAGTTAATTTTAACCTTGTTTT
1 AAAAGTTAATTTTAACCTTGTTTT
17844392 AAAA-TTAATTTTAACCTTGTTTT
1 AAAAGTTAATTTTAACCTTGTTTT
17844415 AAAA
1 AAAA
17844419 AAAACTTCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 23 0.85
24 4 0.15
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (24 bp):
AAAAGTTAATTTTAACCTTGTTTT
Found at i:17845750 original size:44 final size:44
Alignment explanation
Indices: 17845687--17846029 Score: 153
Period size: 44 Copynumber: 7.5 Consensus size: 44
17845677 ATTCCATTGT
* *
17845687 AACTTTAGGGATATAAGATTTGTAGCTTCATCTTGCTCCACTGC
1 AACTTCAGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTGC
* * * * * * *
17845731 AACTTCAGGGAGATAAGATTCACTATTGTTTTGATCTAT--TCTAATGT
1 AACTTCAGGGAGATAAGATT---TGTAG-CTTCATCT-TGCTCCACTGC
* * * * * *
17845778 AACTTCAGGGATATACGATTTATAAG-TTCATCTTTCTCTACTAC
1 AACTTCAGGGAGATAAGATTTGT-AGCTTCATCTTGCTCCACTGC
* *** *
17845822 AACTTCAGGGAGATAAGATTCACTATTGTAGTTTCATTCCAAC-CCATTGC
1 AACTTCAGGGAGATAAG----A-T-TTGTAGCTTCA-TCTTGCTCCACTGC
* *
17845872 AACTTCAAGGG-TATAGGATTTGTAGCTTCATCTTGCTCCACTGC
1 AACTTC-AGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTGC
* * *
17845916 AACTTCAAGGAGATAAGATTCGTTATGGTAGCTTCAAT-TCGAC-CCACTGT
1 AACTTCAGGGAGATAAGA----TT-T-GTAGCTTC-ATCTTG-CTCCACTGC
* * *
17845966 AACTTTAGGG-GTATAGGATTTGTAGCTTCATCTTGCTCCACTAC
1 AACTTCAGGGAG-ATAAGATTTGTAGCTTCATCTTGCTCCACTGC
* *
17846010 AACTTCAAGAAGATAAGATT
1 AACTTCAGGGAGATAAGATT
17846030 CACCATTGTA
Statistics
Matches: 221, Mismatches: 47, Indels: 62
0.67 0.14 0.19
Matches are distributed among these distances:
42 1 0.00
43 15 0.07
44 97 0.44
45 4 0.02
46 3 0.01
47 26 0.12
48 9 0.04
49 6 0.03
50 50 0.23
51 10 0.05
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (44 bp):
AACTTCAGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTGC
Found at i:17845928 original size:94 final size:94
Alignment explanation
Indices: 17845693--17846183 Score: 528
Period size: 94 Copynumber: 5.2 Consensus size: 94
17845683 TTGTAACTTT
* *
17845693 AGGGATATAAGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTATT
1 AGGG-TATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCACTATT
* * ** * * *
17845758 GT--TTTGA-TCTATTCTAATGTAACTTC-
65 GTAGTTTCATTCCAACCCACTGCAACTTCA
* * * * * *
17845784 AGGGATATACGATTTATAAG-TTCATCTTTCTCTACTACAACTTCAGGGAGATAAGATTCACTAT
1 AGGG-TATAGGATTTGT-AGCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCACTAT
*
17845848 TGTAGTTTCATTCCAACCCATTGCAACTTCA
64 TGTAGTTTCATTCCAACCCACTGCAACTTCA
** *
17845879 AGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTTATGG
1 AGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCACTATTG
* * * *
17845944 TAGCTTCAATT-CGACCCACTGTAACTTTA
66 TAGTTTC-ATTCCAACCCACTGCAACTTCA
* * * *
17845973 GGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTACAACTTCAAGAAGATAAGATTCACCATTG
1 AGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCACTATTG
* *
17846038 TAATTTAATTCCAACCCACTGCAACTTCA
66 TAGTTTCATTCCAACCCACTGCAACTTCA
* * * *
17846067 GGGGTATAGGATTTGTGGCTTCATCCTT-CTCCACTGCAACTTTAAGGAGATAAGATTCACTACT
1 AGGGTATAGGATTTGTAGCTTCAT-CTTGCTCCACTGCAACTTCAAGGAGATAAGATTCACTATT
* * * * *
17846131 ATAGCTTCAATCCGACCCACAGCAACTTCA
65 GTAGTTTCATTCCAACCCACTGCAACTTCA
* *
17846161 ATGGTATAGGAATTGTAGCTTCA
1 AGGGTATAGGATTTGTAGCTTCA
17846184 CTGATCTGTT
Statistics
Matches: 335, Mismatches: 56, Indels: 15
0.83 0.14 0.04
Matches are distributed among these distances:
91 59 0.18
92 2 0.01
93 9 0.03
94 255 0.76
95 10 0.03
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (94 bp):
AGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCACTATTG
TAGTTTCATTCCAACCCACTGCAACTTCA
Found at i:17846051 original size:188 final size:189
Alignment explanation
Indices: 17845680--17846183 Score: 596
Period size: 188 Copynumber: 2.7 Consensus size: 189
17845670 TCGATATATT
* * * *
17845680 CCATTGTAACTT-TAGGGATATAAGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAGGGAGA
1 CCATTGCAACTTCAAGGG-TATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGA
* * * * * * * * *
17845744 TAAGATTCACTATTGTTTTG-ATCTATTCTA---A-TGTAACTTCAGGGATATACGATTTATAAG
65 TAAGATTCACTACTG-ATAGCTTCAATTCGACCCACTGTAACTTCAGGGGTATAGGATTTGT-AG
* * * * * * *
17845804 -TTCATCTTTCTCTACTACAACTTCAGGGAGATAAGATTCACTATTGTAGTTTCATTCCAAC
128 CTTCATCTTGCTCCACTACAACTTCAAGAAGATAAGATTCACCATTGTAATTTAATTCCAAC
17845865 CCATTGCAACTTCAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGAT
1 CCATTGCAACTTCAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGAT
** * *
17845930 AAGATTCGTTA-TGGTAGCTTCAATTCGACCCACTGTAACTTTAGGGGTATAGGATTTGTAGCTT
66 AAGATTCACTACTGATAGCTTCAATTCGACCCACTGTAACTTCAGGGGTATAGGATTTGTAGCTT
17845994 CATCTTGCTCCACTACAACTTCAAGAAGATAAGATTCACCATTGTAATTTAATTCCAAC
131 CATCTTGCTCCACTACAACTTCAAGAAGATAAGATTCACCATTGTAATTTAATTCCAAC
* * * *
17846053 CCACTGCAACTTCAGGGGTATAGGATTTGTGGCTTCATCCTT-CTCCACTGCAACTTTAAGGAGA
1 CCATTGCAACTTCAAGGGTATAGGATTTGTAGCTTCAT-CTTGCTCCACTGCAACTTCAAGGAGA
* * * ** *
17846117 TAAGATTCACTACT-ATAGCTTCAATCCGACCCACAGCAACTTCAATGGTATAGGAATTGTAGCT
65 TAAGATTCACTACTGATAGCTTCAATTCGACCCACTGTAACTTCAGGGGTATAGGATTTGTAGCT
17846181 TCA
130 TCA
17846184 CTGATCTGTT
Statistics
Matches: 274, Mismatches: 36, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
183 2 0.01
184 9 0.03
185 65 0.24
186 4 0.01
187 3 0.01
188 187 0.68
189 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (189 bp):
CCATTGCAACTTCAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTCAAGGAGAT
AAGATTCACTACTGATAGCTTCAATTCGACCCACTGTAACTTCAGGGGTATAGGATTTGTAGCTT
CATCTTGCTCCACTACAACTTCAAGAAGATAAGATTCACCATTGTAATTTAATTCCAAC
Found at i:17862654 original size:4 final size:4
Alignment explanation
Indices: 17862645--17862672 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
17862635 ATCAATTTGC
17862645 ATCT ATCT ATCT ATCT ATCT ATCT ATCT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT
17862673 GACAAACTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
ATCT
Found at i:17864054 original size:31 final size:31
Alignment explanation
Indices: 17864016--17864078 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
17864006 CAATATTAGA
* * *
17864016 TTTCGGAATTTTTTTTATCATGTTTCGGTTT
1 TTTCGGAAATTTTATTATCATGTCTCGGTTT
* *
17864047 TTTCGGAAATTTTATTATTATGTCTGGGTTT
1 TTTCGGAAATTTTATTATCATGTCTCGGTTT
17864078 T
1 T
17864079 AAACATTCTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.16, C:0.08, G:0.17, T:0.59
Consensus pattern (31 bp):
TTTCGGAAATTTTATTATCATGTCTCGGTTT
Found at i:17864463 original size:19 final size:19
Alignment explanation
Indices: 17864409--17864463 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 19
17864399 TTTCATGAAT
17864409 TATTATAATT-ATAATTTATA
1 TATT-TAATTAATAA-TTATA
* *
17864429 AAATTAATTTAA-AATTATA
1 TATTTAA-TTAATAATTATA
17864448 TATTTAATTAATAATT
1 TATTTAATTAATAATT
17864464 TACTTAACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.14
19 17 0.61
20 6 0.21
21 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTTAATTAATAATTATA
Found at i:17866479 original size:21 final size:22
Alignment explanation
Indices: 17866455--17866499 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
17866445 TTTGATTATT
**
17866455 TAATTTCAATCAATTAAA-TAA
1 TAATTTCAAGAAATTAAATTAA
*
17866476 TAATTTGAAGAAATTAAATTAA
1 TAATTTCAAGAAATTAAATTAA
17866498 TA
1 TA
17866500 TATAAGTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (22 bp):
TAATTTCAAGAAATTAAATTAA
Found at i:17870549 original size:31 final size:31
Alignment explanation
Indices: 17870510--17870600 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 31
17870500 GGACCACTAC
* *
17870510 ATGTTTACTAT-CCTGACAGACTATCTGTTTT
1 ATGTTTACTATCCCAG-CAGACTATCTGTTCT
* * * *
17870541 GTGTTTACTGTCCCAGCGGACTATTTGTTCT
1 ATGTTTACTATCCCAGCAGACTATCTGTTCT
* *
17870572 ATGTTTACTATCCCAGCAAACTATTTGTT
1 ATGTTTACTATCCCAGCAGACTATCTGTT
17870601 TTGTGGATTC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
31 46 0.94
32 3 0.06
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (31 bp):
ATGTTTACTATCCCAGCAGACTATCTGTTCT
Found at i:17872638 original size:27 final size:27
Alignment explanation
Indices: 17872607--17872679 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
17872597 ACAAGTTAGT
**
17872607 AAAGAAAAGCCTTTGTGGTGTAATATG
1 AAAGAAAAGCCTTTGTGGCATAATATG
*
17872634 AAAGAAAATCCTTTGTGGCATAATATG
1 AAAGAAAAGCCTTTGTGGCATAATATG
* * *
17872661 AAAGGAATGCCTTTATGGC
1 AAAGAAAAGCCTTTGTGGC
17872680 GAACTCTGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (27 bp):
AAAGAAAAGCCTTTGTGGCATAATATG
Found at i:17878157 original size:52 final size:52
Alignment explanation
Indices: 17878079--17878183 Score: 201
Period size: 52 Copynumber: 2.0 Consensus size: 52
17878069 TGATTCGACA
*
17878079 TAACCTTTTTATGATTAACCTTTTATGTAATAATCCTTAAGTCCTTTATCTC
1 TAACCTTTTTATGATTAACCTTTTATGCAATAATCCTTAAGTCCTTTATCTC
17878131 TAACCTTTTTATGATTAACCTTTTATGCAATAATCCTTAAGTCCTTTATCTC
1 TAACCTTTTTATGATTAACCTTTTATGCAATAATCCTTAAGTCCTTTATCTC
17878183 T
1 T
17878184 GGATTGGACA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.27, C:0.20, G:0.06, T:0.48
Consensus pattern (52 bp):
TAACCTTTTTATGATTAACCTTTTATGCAATAATCCTTAAGTCCTTTATCTC
Found at i:17881718 original size:63 final size:63
Alignment explanation
Indices: 17881618--17881744 Score: 200
Period size: 63 Copynumber: 2.0 Consensus size: 63
17881608 AAGATTGTTG
*
17881618 ATGGGAACCTCTTCCTCATCATCGTCGATATCGAACTTTGTGATTTTATCAATCAATTGATGA
1 ATGGGAACCTCTTCCTCATCATCATCGATATCGAACTTTGTGATTTTATCAATCAATTGATGA
* * * * *
17881681 ATGGGTACCTCTTCCTCATCATCATCGGTATCTAACTTTGTGATTTTATCAATTAGTTGATGA
1 ATGGGAACCTCTTCCTCATCATCATCGATATCGAACTTTGTGATTTTATCAATCAATTGATGA
17881744 A
1 A
17881745 CCACACGTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 58 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.39
Consensus pattern (63 bp):
ATGGGAACCTCTTCCTCATCATCATCGATATCGAACTTTGTGATTTTATCAATCAATTGATGA
Found at i:17882330 original size:113 final size:114
Alignment explanation
Indices: 17882131--17882358 Score: 395
Period size: 113 Copynumber: 2.0 Consensus size: 114
17882121 TTCTACAACT
* *
17882131 TCAATCATTCACTGCTCAAACTCAGTATGAGAAGTCGGGGGGGGCAACAGAAGTAGTCCTAGGAG
1 TCAATCATTCACTACTCAAACTCAGTATGAGAAGTCGGAGGGGGCAACAGAAGTAGTCCTAGGAG
17882196 GAGAAGATAGAGGTGTGCTAGTTTGCCTTGGCATTTCCTTGCTAACCAC
66 GAGAAGATAGAGGTGTGCTAGTTTGCCTTGGCATTTCCTTGCTAACCAC
*
17882245 TCAATTATTCACTACTCAAACTCAGTATGAGAAGTC-GAGGGGGCAACAGAAGTAGTCCTAGGAG
1 TCAATCATTCACTACTCAAACTCAGTATGAGAAGTCGGAGGGGGCAACAGAAGTAGTCCTAGGAG
* * *
17882309 GAGGAGATGGAGGTGTGCTAGTTTGCCTTGGGATTTCCTTGCTAACCAC
66 GAGAAGATAGAGGTGTGCTAGTTTGCCTTGGCATTTCCTTGCTAACCAC
17882358 T
1 T
17882359 TTCTGTGCAA
Statistics
Matches: 108, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
113 74 0.69
114 34 0.31
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (114 bp):
TCAATCATTCACTACTCAAACTCAGTATGAGAAGTCGGAGGGGGCAACAGAAGTAGTCCTAGGAG
GAGAAGATAGAGGTGTGCTAGTTTGCCTTGGCATTTCCTTGCTAACCAC
Found at i:17890438 original size:12 final size:12
Alignment explanation
Indices: 17890413--17890451 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
17890403 ACTCGCTTCT
* *
17890413 TTACTTACTCAC
1 TTACTTGCTTAC
*
17890425 TTACTTGTTTAC
1 TTACTTGCTTAC
17890437 TTACTTGCTTAC
1 TTACTTGCTTAC
17890449 TTA
1 TTA
17890452 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:17890776 original size:50 final size:50
Alignment explanation
Indices: 17890703--17890937 Score: 249
Period size: 50 Copynumber: 4.6 Consensus size: 50
17890693 TCTGTACTGT
* * * * ** *
17890703 CAATGCCATATTCCAGATATGGTCTTACATGGGAGTTCCCATATCGGTGC
1 CAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGGTGC
*
17890753 CCATGCCATGTCCCAAACATGGTCTT--ATGGGGACCTCTCATATCGGTGC
1 CAATGCCATGTCCCAAACATGGTCTTACAT-GGGACCTCTCATATCGGTGC
* * * *
17890802 CAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGT
1 CAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGGTGC
* * * *
17890852 GAATGCTATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGC
1 CAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTGC
17890908 CAATGCCATGTCCCAAACATGGTCTTACAT
1 CAATGCCATGTCCCAAACATGGTCTTACAT
17890938 TGGATCTCAT
Statistics
Matches: 154, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
48 2 0.01
49 40 0.26
50 78 0.51
51 2 0.01
53 2 0.01
56 30 0.19
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
CAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGGTGC
Found at i:17890818 original size:99 final size:99
Alignment explanation
Indices: 17890715--17890937 Score: 250
Period size: 99 Copynumber: 2.2 Consensus size: 99
17890705 ATGCCATATT
* ** *
17890715 CCAGATATGGTCTTACATGGGAGTTCCCATATCGGTGCCCATGCCATGTCCCAAACATGGTCTT-
1 CCAGACATGGTCTTACATGGGACCTCCCATATCGGTGCCAATGCCATGTCCCAAACATGGTCTTA
17890779 ATGGGGACCTCTCATATCGGTGCCAACGCCATGTC
66 AT-GGGACCTCTCATATCGGTGCCAACGCCATGTC
* * ** * *
17890814 CCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGTGAATGCTATGTCCCAGACATGGTCTTA
1 CCAGACATGGTCTTACATGGGACCTCCCATATCGGTGCCAATGCCATGTCCCAAACATGGTCTTA
* *
17890879 CATGGGACCTCTCATAATCTCAATGATGCCAATGCCATGTC
66 -ATGGGACCTCTCAT-A--TC---GGTGCCAACGCCATGTC
*
17890920 CCAAACATGGTCTTACAT
1 CCAGACATGGTCTTACAT
17890938 TGGATCTCAT
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
99 54 0.52
100 12 0.12
101 3 0.03
103 2 0.02
106 32 0.31
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (99 bp):
CCAGACATGGTCTTACATGGGACCTCCCATATCGGTGCCAATGCCATGTCCCAAACATGGTCTTA
ATGGGACCTCTCATATCGGTGCCAACGCCATGTC
Found at i:17892317 original size:20 final size:20
Alignment explanation
Indices: 17892292--17892333 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
17892282 AAAATAGTGC
17892292 TTCTACAATCCACACAAACT
1 TTCTACAATCCACACAAACT
17892312 TTCTACAATCCACACAAACT
1 TTCTACAATCCACACAAACT
17892332 TT
1 TT
17892334 ACAACCTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.33, G:0.00, T:0.29
Consensus pattern (20 bp):
TTCTACAATCCACACAAACT
Found at i:17893356 original size:18 final size:18
Alignment explanation
Indices: 17893327--17893361 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
17893317 AATTACATGT
17893327 TGGACTAAATTG-AAAGA
1 TGGACTAAATTGCAAAGA
17893344 TGGACTAAAATTGCAAAG
1 TGGACT-AAATTGCAAAG
17893362 GAATTTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (18 bp):
TGGACTAAATTGCAAAGA
Found at i:17893680 original size:25 final size:24
Alignment explanation
Indices: 17893659--17893716 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
17893649 CATCTCGCAC
* *
17893659 GAGCTTACCATTATTTAGCTCGGA
1 GAGCTTACCATTATTCAGCTCGAA
*
17893683 GTAGCTTACCGTTATTCAGCTCGAA
1 G-AGCTTACCATTATTCAGCTCGAA
17893708 GGAGCTTAC
1 -GAGCTTAC
17893717 TGTTTACAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 1 0.03
25 27 0.93
26 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (24 bp):
GAGCTTACCATTATTCAGCTCGAA
Found at i:17895632 original size:68 final size:68
Alignment explanation
Indices: 17895523--17895657 Score: 234
Period size: 68 Copynumber: 2.0 Consensus size: 68
17895513 TTTCATAAAG
17895523 CTCAACCCTCCGTTCACGGAGTAGCTTCGAGTGGTGCTAGACCCGTATCTGAGGGCTAGGGAGGA
1 CTCAACCCTCCGTTCACGGAGTAGCTTCGAGTGGTGCTAGACCCGTATCTGAGGGCTAGGGAGGA
17895588 GAA
66 GAA
* * * *
17895591 CTCAAGCCTCTGTTGACGGAGTAGCTTTGAGTGGTGCTAGACCCGTATCTGAGGGCTAGGGAGGA
1 CTCAACCCTCCGTTCACGGAGTAGCTTCGAGTGGTGCTAGACCCGTATCTGAGGGCTAGGGAGGA
17895656 GA
66 GA
17895658 GGCTAAGGAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.21, C:0.22, G:0.34, T:0.22
Consensus pattern (68 bp):
CTCAACCCTCCGTTCACGGAGTAGCTTCGAGTGGTGCTAGACCCGTATCTGAGGGCTAGGGAGGA
GAA
Done.