Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 70 of 211
Found at i:21568450 original size:81 final size:80
Alignment explanation
Indices: 21568246--21568525 Score: 316
Period size: 81 Copynumber: 3.5 Consensus size: 80
21568236 TGCGATTCAT
* ** * *
21568246 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
21568310 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
21568326 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
21568391 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
21568407 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
21568472 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
21568488 GGGTAAAATGT-CTAAAATACCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATACCCCAAAGGGTAAAATGAC
21568526 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
80 73 0.43
81 96 0.56
82 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:21568535 original size:26 final size:27
Alignment explanation
Indices: 21568246--21568527 Score: 258
Period size: 27 Copynumber: 10.5 Consensus size: 27
21568236 TGCGATTCAT
*
21568246 GGGTAAAATGACCGAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
**
21568273 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
21568300 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
*
21568326 GGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
* * ** *
21568353 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21568380 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
21568407 GGGTAAAATTACTAAAATACCCTCA-AA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
21568434 GGATAAAATGA-TCGAAATTACCTCAG-A
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
21568461 GGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21568488 GGGTAAAATGTCTAAAATACCCCA-TA
1 GGGTAAAATGACTGAAATACCCCAGAA
21568514 GGGTAAAATGACTG
1 GGGTAAAATGACTG
21568528 TTATACCCTT
Statistics
Matches: 209, Mismatches: 33, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
26 42 0.20
27 162 0.78
28 5 0.02
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:21569616 original size:81 final size:80
Alignment explanation
Indices: 21569412--21569691 Score: 316
Period size: 81 Copynumber: 3.5 Consensus size: 80
21569402 TGCGATTCAT
* ** * *
21569412 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
21569476 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
21569492 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
21569557 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
21569573 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
21569638 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
21569654 GGGTAAAATGT-CTAAAATACCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATACCCCAAAGGGTAAAATGAC
21569692 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
80 73 0.43
81 96 0.56
82 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:21569701 original size:26 final size:27
Alignment explanation
Indices: 21569412--21569693 Score: 258
Period size: 27 Copynumber: 10.5 Consensus size: 27
21569402 TGCGATTCAT
*
21569412 GGGTAAAATGACCGAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
**
21569439 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
21569466 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
*
21569492 GGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
* * ** *
21569519 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21569546 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
21569573 GGGTAAAATTACTAAAATACCCTCA-AA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
21569600 GGATAAAATGA-TCGAAATTACCTCAG-A
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
21569627 GGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21569654 GGGTAAAATGTCTAAAATACCCCA-TA
1 GGGTAAAATGACTGAAATACCCCAGAA
21569680 GGGTAAAATGACTG
1 GGGTAAAATGACTG
21569694 TTATACCCTT
Statistics
Matches: 209, Mismatches: 33, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
26 42 0.20
27 162 0.78
28 5 0.02
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:21570781 original size:81 final size:80
Alignment explanation
Indices: 21570577--21570856 Score: 316
Period size: 81 Copynumber: 3.5 Consensus size: 80
21570567 TGCGATTCAT
* ** * *
21570577 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
21570641 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
21570657 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
21570722 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
21570738 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
21570803 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
21570819 GGGTAAAATGT-CTAAAATACCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATACCCCAAAGGGTAAAATGAC
21570857 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
80 73 0.43
81 96 0.56
82 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:21570866 original size:26 final size:27
Alignment explanation
Indices: 21570577--21570858 Score: 258
Period size: 27 Copynumber: 10.5 Consensus size: 27
21570567 TGCGATTCAT
*
21570577 GGGTAAAATGACCGAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
**
21570604 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
21570631 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
*
21570657 GGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
* * ** *
21570684 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21570711 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
21570738 GGGTAAAATTACTAAAATACCCTCA-AA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
21570765 GGATAAAATGA-TCGAAATTACCTCAG-A
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
21570792 GGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21570819 GGGTAAAATGTCTAAAATACCCCA-TA
1 GGGTAAAATGACTGAAATACCCCAGAA
21570845 GGGTAAAATGACTG
1 GGGTAAAATGACTG
21570859 TTATACCCTT
Statistics
Matches: 209, Mismatches: 33, Indels: 27
0.78 0.12 0.10
Matches are distributed among these distances:
26 42 0.20
27 162 0.78
28 5 0.02
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:21571778 original size:27 final size:27
Alignment explanation
Indices: 21571740--21572023 Score: 220
Period size: 27 Copynumber: 10.4 Consensus size: 27
21571730 TGCGATTCAT
21571740 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
21571767 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
21571794 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
21571820 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
21571847 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
21571874 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
21571901 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
21571928 GGATAAATTAATGATCGAAATTACCTC-AGA
1 GGGT-AA--AATGACCGAAA-TACCCCTAAA
*
21571958 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
21571985 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
21572012 GGGTAAAATGAC
1 GGGTAAAATGAC
21572024 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
26 30 0.15
27 153 0.75
28 3 0.01
29 2 0.01
30 12 0.06
31 2 0.01
32 2 0.01
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:21571978 original size:84 final size:81
Alignment explanation
Indices: 21571740--21572023 Score: 283
Period size: 80 Copynumber: 3.5 Consensus size: 81
21571730 TGCGATTCAT
* ** * * *
21571740 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCCTAAAGGATAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
*
21571804 A-TAGAAATACCCTAG-A
65 ACT-GAAATACCCTCGAA
* * * ** * *
21571820 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCCTAAAGGATAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
21571885 CCGAAATACCCTCGAA
66 CTGAAATACCCTCGAA
*
21571901 GGGTAAAATTACTAAAATA-CCCTCAAAGGATAAATTAATGATCGAAATTACCTCAGAGGGTAAA
1 GGGTAAAATTACTAAAATACCCCT-AAAGGAT-AA--AATGACCGAAATTACCTCAGAGGGTAAA
21571965 ATGACTGAAATACCC-CAGAA
62 ATGACTGAAATACCCTC-GAA
* * *
21571985 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATACCCCTAAAGGATAAAATGAC
21572024 TGTTATACCC
Statistics
Matches: 170, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
80 63 0.37
81 37 0.22
82 2 0.01
83 3 0.02
84 61 0.36
85 4 0.02
ACGTcount: A:0.43, C:0.18, G:0.19, T:0.19
Consensus pattern (81 bp):
GGGTAAAATTACTAAAATACCCCTAAAGGATAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
CTGAAATACCCTCGAA
Found at i:21572948 original size:27 final size:27
Alignment explanation
Indices: 21572910--21573210 Score: 198
Period size: 27 Copynumber: 11.4 Consensus size: 27
21572900 TGCGATTCAT
21572910 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
21572937 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
21572964 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
21572990 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
21573017 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
21573044 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
21573071 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* *
21573098 --G-AAAATGA--TAAATTACCTC-AAA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
* * * *
21573120 -GG-ATAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
21573145 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
21573172 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
21573199 GGGTAAAATGAC
1 GGGTAAAATGAC
21573211 TGTTATACCC
Statistics
Matches: 220, Mismatches: 41, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
22 6 0.03
23 9 0.04
24 8 0.04
25 13 0.06
26 32 0.15
27 151 0.69
28 1 0.00
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:21572974 original size:54 final size:54
Alignment explanation
Indices: 21572910--21573211 Score: 250
Period size: 54 Copynumber: 5.7 Consensus size: 54
21572900 TGCGATTCAT
* *
21572910 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACTAAAATACCCCAGAA
**
21572964 GGGTAAAATGATAGAAATA-CCCTAGAGGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACTAAAATACCCC-AGAA
* * * * * **
21573017 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACTAAAATACCC-CAGAA
* ** * * *
21573071 GGGTAAAATTACTAAAATA-CCCTCA-A-AG-AAAATGA-TAAATTACCTCA-AA
1 GGGTAAAATGACCGAAATACCCCT-AGAGGGTAAAATGACTAAAATACCCCAGAA
* * * *
21573120 -GG-ATAATGATCGAAATTACCTC-AGAGGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACCGAAA-TACCCCTAGAGGGTAAAATGACTAAAATACCCCAGAA
* ** * *
21573172 GGGTAAAATGTCTAAAATACCCCCATAGGGTAAAATGACT
1 GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACT
21573212 GTTATACCCT
Statistics
Matches: 189, Mismatches: 43, Indels: 32
0.72 0.16 0.12
Matches are distributed among these distances:
47 9 0.05
48 5 0.03
49 6 0.03
50 13 0.07
51 15 0.08
52 2 0.01
53 57 0.30
54 81 0.43
55 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.20
Consensus pattern (54 bp):
GGGTAAAATGACCGAAATACCCCTAGAGGGTAAAATGACTAAAATACCCCAGAA
Found at i:21573053 original size:80 final size:79
Alignment explanation
Indices: 21572910--21573181 Score: 258
Period size: 80 Copynumber: 3.5 Consensus size: 79
21572900 TGCGATTCAT
** * * *
21572910 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATGA
1 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCAAAATTCCCTAGAA-GGTTAAATGA
*
21572975 TAGAAATACCCTAGA
65 TCGAAATACCCTAGA
* * *
21572990 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCAAAATTCCCTAGAAGG-TTAAATGA
* *
21573055 CCGAAATACCCTCGAA
65 TCGAAATACCCTAG-A
* * * *
21573071 GGGTAAAATTACTAAAATA-CCCTCAAA--G-AAAATGA--TAAATTACCTCA-AAGGAT-AATG
1 GGGTAAAATGACTAAAATACCCCT-AAAGGGTAAAATGACCAAAATTCCCT-AGAAGGTTAAATG
21573128 ATCGAAATTA-CCTCAGA
64 ATCGAAA-TACCCT-AGA
*
21573145 GGGTAAAATGACTGAAATACCCC-AGAAGGGTAAAATG
1 GGGTAAAATGACTAAAATACCCCTA-AAGGGTAAAATG
21573182 TCTAAAATAC
Statistics
Matches: 160, Mismatches: 21, Indels: 25
0.78 0.10 0.12
Matches are distributed among these distances:
73 1 0.01
74 33 0.21
75 7 0.04
76 12 0.08
77 6 0.04
78 7 0.04
79 3 0.02
80 69 0.43
81 22 0.14
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (79 bp):
GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCAAAATTCCCTAGAAGGTTAAATGAT
CGAAATACCCTAGA
Found at i:21573114 original size:23 final size:24
Alignment explanation
Indices: 21573083--21573139 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
21573073 GTAAAATTAC
*
21573083 TAAAATACCCTCAAA-GAAAATGA
1 TAAATTACCCTCAAAGGAAAATGA
*
21573106 TAAATTA-CCTCAAAGGATAATGA
1 TAAATTACCCTCAAAGGAAAATGA
21573129 TCGAAATTACC
1 T--AAATTACC
21573140 TCAGAGGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 7 0.25
23 14 0.50
25 6 0.21
26 1 0.04
ACGTcount: A:0.49, C:0.18, G:0.11, T:0.23
Consensus pattern (24 bp):
TAAATTACCCTCAAAGGAAAATGA
Found at i:21573116 original size:22 final size:24
Alignment explanation
Indices: 21573091--21573142 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
21573081 ACTAAAATAC
21573091 CCTCAAA-GAAAATGAT-AAATTA
1 CCTCAAAGGAAAATGATCAAATTA
*
21573113 CCTCAAAGGATAATGATCGAAATTA
1 CCTCAAAGGAAAATGATC-AAATTA
21573138 CCTCA
1 CCTCA
21573143 GAGGGTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 7 0.27
23 8 0.31
25 11 0.42
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.23
Consensus pattern (24 bp):
CCTCAAAGGAAAATGATCAAATTA
Found at i:21574136 original size:27 final size:27
Alignment explanation
Indices: 21574098--21574378 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
21574088 TGCGATTCAT
21574098 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
21574125 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
21574152 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
21574178 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
21574205 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
21574232 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
21574259 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
21574286 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
21574313 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
21574340 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
21574367 GGGTAAAATGAC
1 GGGTAAAATGAC
21574379 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:21574302 original size:81 final size:80
Alignment explanation
Indices: 21574098--21574378 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
21574088 TGCGATTCAT
* ** * *
21574098 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
21574162 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
21574178 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
21574243 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
21574259 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
21574324 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
21574340 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
21574379 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:21575304 original size:27 final size:27
Alignment explanation
Indices: 21575260--21575566 Score: 209
Period size: 27 Copynumber: 11.5 Consensus size: 27
21575250 TGCGATTCAT
**
21575260 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCCTAAA
* * *
21575287 GAGTAAAATGACCAAAATACCCCAAAA
1 GGGTAAAATGACTAAAATACCCCTAAA
* **
21575314 GGGTAAAATGA-TAGAAATACCCTTGCA
1 GGGTAAAATGACTA-AAATACCCCTAAA
* *
21575341 GGGTAAATTGACTAAAATA-CCCTAGA
1 GGGTAAAATGACTAAAATACCCCTAAA
* * **
21575367 GGGTAAAATGACTAAAATTCCCTTGGA
1 GGGTAAAATGACTAAAATACCCCTAAA
* * ** *
21575394 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACTAAAATACCCCT-AAA
*
21575421 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACTAAAATACCCCT-AAA
* * *
21575448 -GG-AAAATGATTGAAATTACCTC-AAA
1 GGGTAAAATGACT-AAAATACCCCTAAA
* * * * *
21575473 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGA-CTAAAATACCCCTAAA
*
21575500 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACTAAAATACCCCTA-AA
* * *
21575527 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACTAAAATACCCCTAAA
21575554 GGGTAAAATGACT
1 GGGTAAAATGACT
21575567 GTTATACCCT
Statistics
Matches: 221, Mismatches: 48, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
25 10 0.05
26 42 0.19
27 166 0.75
28 3 0.01
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.21
Consensus pattern (27 bp):
GGGTAAAATGACTAAAATACCCCTAAA
Found at i:21575378 original size:80 final size:78
Alignment explanation
Indices: 21575260--21575564 Score: 256
Period size: 80 Copynumber: 3.8 Consensus size: 78
21575250 TGCGATTCAT
** * * *
21575260 GGGTAAAATGACCGAAATACCCCTAAAGAGTAAAATGACCAAAATACCCCAAAAGGGTAAAATGA
1 GGGTAAAATGACTAAAATA-CCCTAGAGGGTAAAATGACTAAAATACCCC-AAAGGGTAAAATGA
* *
21575325 TAGAAATACCCTTGCA
64 TCGAAATACCCTAG-A
* * *** * * *
21575341 GGGTAAATTGACTAAAATACCCTAGAGGGTAAAATGACTAAAATTCCCTTGGAGGTTTAAATGAC
1 GGGTAAAATGACTAAAATACCCTAGAGGGTAAAATGACTAAAATACCC-CAAAGGGTAAAATGAT
*
21575406 CGAAATACCCTCGAA
65 CGAAATACCCTAG-A
* * * * * *
21575421 GGGTAAAATTACTAAAATACCCTCA-AAGG-AAAATGATTGAAATTACCTCAAAGGATAAAATGA
1 GGGTAAAATGACTAAAATACCCT-AGAGGGTAAAATGACT-AAAATACCCCAAAGGGTAAAATGA
21575484 TCGAAATTA-CCTCAGA
64 TCGAAA-TACCCT-AGA
* * * *
21575500 GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGTCTAAAATACCCCCATAGGGTAAAATGA
1 GGGTAAAATGACTAAAATACCCTAG-AGGGTAAAATGACTAAAATA-CCCCAAAGGGTAAAATGA
21575565 CTGTTATACC
Statistics
Matches: 175, Mismatches: 40, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
78 1 0.01
79 47 0.27
80 88 0.50
81 39 0.22
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.20
Consensus pattern (78 bp):
GGGTAAAATGACTAAAATACCCTAGAGGGTAAAATGACTAAAATACCCCAAAGGGTAAAATGATC
GAAATACCCTAGA
Found at i:21575557 original size:54 final size:54
Alignment explanation
Indices: 21575289--21575567 Score: 234
Period size: 54 Copynumber: 5.2 Consensus size: 54
21575279 CCCCTAAAGA
** * * *
21575289 GTAAAATGACCAAAATACCCCAAAAGGGTAAAATG-ATAGAAATACCCT-TGCAGG
1 GTAAAATGACTGAAATACCCCAGAAGGGTAAAATGTCTA-AAATACCCTCAG-AGG
* * * * * **
21575343 GTAAATTGACTAAAATACCCTAG-AGGGTAAAATGACTAAAATTCCCTTGGAGG
1 GTAAAATGACTGAAATACCCCAGAAGGGTAAAATGTCTAAAATACCCTCAGAGG
* * * *
21575396 TTTAAATGACCGAAATACCCTC-GAAGGGTAAAAT-TACTAAAATACCCTCA-AAG
1 GTAAAATGACTGAAATACCC-CAGAAGGGTAAAATGT-CTAAAATACCCTCAGAGG
* * * * *
21575449 G-AAAATGATTGAAATTACCTCA-AAGGATAAAATGATCGAAATTA-CCTCAGAGG
1 GTAAAATGACTGAAA-TACCCCAGAAGGGTAAAATG-TCTAAAATACCCTCAGAGG
* *
21575502 GTAAAATGACTGAAATACCCCAGAAGGGTAAAATGTCTAAAATACCCCCATAGG
1 GTAAAATGACTGAAATACCCCAGAAGGGTAAAATGTCTAAAATACCCTCAGAGG
21575556 GTAAAATGACTG
1 GTAAAATGACTG
21575568 TTATACCCTT
Statistics
Matches: 178, Mismatches: 34, Indels: 26
0.75 0.14 0.11
Matches are distributed among these distances:
52 26 0.15
53 66 0.37
54 86 0.48
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.21
Consensus pattern (54 bp):
GTAAAATGACTGAAATACCCCAGAAGGGTAAAATGTCTAAAATACCCTCAGAGG
Found at i:21576452 original size:27 final size:27
Alignment explanation
Indices: 21576414--21576694 Score: 241
Period size: 27 Copynumber: 10.4 Consensus size: 27
21576404 TGCGATTCAT
21576414 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
*
21576441 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
** *
21576468 GGGTAAAATGATAGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTAAA
**
21576494 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * **
21576521 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCTAAA
* * *
21576548 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* **
21576575 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACCGAAATACCCCT-AAA
* * * *
21576602 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTAAA
*
21576629 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACCGAAATACCCCTA-AA
* ** * *
21576656 GGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACCGAAATACCCCTAAA
21576683 GGGTAAAATGAC
1 GGGTAAAATGAC
21576695 TGTTATACCC
Statistics
Matches: 204, Mismatches: 42, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 30 0.15
27 169 0.83
28 3 0.01
29 2 0.01
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACCGAAATACCCCTAAA
Found at i:21576618 original size:81 final size:80
Alignment explanation
Indices: 21576414--21576694 Score: 309
Period size: 81 Copynumber: 3.5 Consensus size: 80
21576404 TGCGATTCAT
* ** * *
21576414 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
21576478 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
21576494 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
21576559 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
21576575 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
21576640 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
21576656 GGGTAAAATGT-CTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATA-CCCCAAAGGGTAAAATGAC
21576695 TGTTATACCC
Statistics
Matches: 171, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
80 60 0.35
81 106 0.62
82 5 0.03
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:21577647 original size:26 final size:27
Alignment explanation
Indices: 21577577--21577873 Score: 180
Period size: 27 Copynumber: 11.5 Consensus size: 27
21577567 TGCGATTCAT
**
21577577 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCCTAAA
*
21577604 GGGTAAAATGACCAAAATACCCC-AGAA
1 GGGTAAAATGACTAAAATACCCCTA-AA
*
21577631 GGGT-AAATGA-TAGAAATA-CCCTAGA
1 GGGTAAAATGACTA-AAATACCCCTAAA
21577656 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCCTAAA
** * * **
21577683 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTAAAATACCCCTAAA
* * ** *
21577710 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACTAAAATACCCCT-AAA
* *
21577737 GGGTAAAATTACTAAAATA-CCCTCAA
1 GGGTAAAATGACTAAAATACCCCTAAA
** *
21577763 ----AAAATGA-TTGAATA-CTC-AAA
1 GGGTAAAATGACTAAAATACCCCTAAA
* * * *
21577783 GGATAAAATGA-TCAAATTACCTC-AGA
1 GGGTAAAATGACT-AAAATACCCCTAAA
*
21577809 GGGTAAAATGACTGAAATA-CCC-AGAA
1 GGGTAAAATGACTAAAATACCCCTA-AA
* *
21577835 GGGTAAAATG-CTAAAATACCCCCATA
1 GGGTAAAATGACTAAAATACCCCTAAA
21577861 GGGTAAAATGACT
1 GGGTAAAATGACT
21577874 GTTATACCCT
Statistics
Matches: 215, Mismatches: 37, Indels: 36
0.75 0.13 0.12
Matches are distributed among these distances:
20 2 0.01
21 7 0.03
22 6 0.03
24 8 0.04
25 22 0.10
26 73 0.34
27 97 0.45
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.20
Consensus pattern (27 bp):
GGGTAAAATGACTAAAATACCCCTAAA
Found at i:21577844 original size:52 final size:53
Alignment explanation
Indices: 21577577--21577874 Score: 187
Period size: 52 Copynumber: 5.8 Consensus size: 53
21577567 TGCGATTCAT
* * * **
21577577 GGGTAAAATGACCG-AAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGATCGAAAATACCTC-AGAGGGTAAAATGACTGAAATA-CCCAGAA
* *
21577631 GGGT-AAATGATAG-AAATACC-CTAGAGGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGATCGAAAATACCTC-AGAGGGTAAAATGACTGAAATA-CCC-AGAA
* * * ** * * * *
21577683 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGATCGAAAATACCTCAGAGGGTAAAATGACTGAAATACCC-AGAA
* * * *
21577737 GGGTAAAATTA-CTAAAATACCCTCA-A----AAAATGATTG-AATACTCA-AA
1 GGGTAAAATGATCGAAAATA-CCTCAGAGGGTAAAATGACTGAAATACCCAGAA
* *
21577783 GGATAAAATGATC-AAATTACCTCAGAGGGTAAAATGACTGAAATACCCAGAA
1 GGGTAAAATGATCGAAAATACCTCAGAGGGTAAAATGACTGAAATACCCAGAA
* * *
21577835 GGGTAAAATG--CTAAAATACCCCCATAGGGTAAAATGACTG
1 GGGTAAAATGATCGAAAATA-CCTCAGAGGGTAAAATGACTG
21577875 TTATACCCTT
Statistics
Matches: 193, Mismatches: 35, Indels: 34
0.74 0.13 0.13
Matches are distributed among these distances:
45 5 0.03
46 17 0.09
47 1 0.01
48 6 0.03
49 7 0.04
50 10 0.05
51 12 0.06
52 62 0.32
53 32 0.17
54 41 0.21
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (53 bp):
GGGTAAAATGATCGAAAATACCTCAGAGGGTAAAATGACTGAAATACCCAGAA
Found at i:21578959 original size:81 final size:80
Alignment explanation
Indices: 21578756--21579034 Score: 316
Period size: 81 Copynumber: 3.5 Consensus size: 80
21578746 TGCGATTCAT
* * * *
21578756 GGGTAAAATGAC-GAAATACCCCTAAAGGGTAAAATGACC-AAAATACCCCAGAAGGGTAAAATG
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAG-AGGGTAAAATG
** *
21578819 ATAGAAATACCCTAG-A
64 ACCGAAATACCCTCGAA
* * ** * *
21578835 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATTACTAAAATACCCC-AAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
21578900 CCGAAATACCCTCGAA
65 CCGAAATACCCTCGAA
* *
21578916 GGGTAAAATTACTAAAATACCCTCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATTACTAAAATACCC-CAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGA
*
21578981 CTGAAATACCC-CAGAA
65 CCGAAATACCCTC-GAA
*
21578997 GGGTAAAATGT-CTAAAATACCCCATAGGGTAAAATGAC
1 GGGTAAAAT-TACTAAAATACCCCAAAGGGTAAAATGAC
21579035 TGTTATACCC
Statistics
Matches: 171, Mismatches: 23, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
79 12 0.07
80 61 0.36
81 96 0.56
82 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (80 bp):
GGGTAAAATTACTAAAATACCCCAAAGGGTAAAATGACCGAAATTACCTCAGAGGGTAAAATGAC
CGAAATACCCTCGAA
Found at i:21579044 original size:26 final size:27
Alignment explanation
Indices: 21578756--21579036 Score: 258
Period size: 27 Copynumber: 10.5 Consensus size: 27
21578746 TGCGATTCAT
21578756 GGGTAAAATGAC-GAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
**
21578782 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
21578809 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
*
21578835 GGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTGAAATACCCC-AGAA
* * ** *
21578862 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21578889 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
21578916 GGGTAAAATTACTAAAATACCCTCA-AA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* *
21578943 GGATAAAATGA-TCGAAATTACCTCAG-A
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
21578970 GGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21578997 GGGTAAAATGTCTAAAATACCCCA-TA
1 GGGTAAAATGACTGAAATACCCCAGAA
21579023 GGGTAAAATGACTG
1 GGGTAAAATGACTG
21579037 TTATACCCTT
Statistics
Matches: 208, Mismatches: 33, Indels: 28
0.77 0.12 0.10
Matches are distributed among these distances:
26 54 0.26
27 149 0.72
28 5 0.02
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:21579971 original size:27 final size:27
Alignment explanation
Indices: 21579917--21580193 Score: 227
Period size: 27 Copynumber: 10.5 Consensus size: 27
21579907 TGCGATTCAT
*
21579917 GGGTAAAATGAC-GAAATACCCCTA-AA
1 GGGTAAAATGACTAAAATACCCC-AGAA
*
21579943 GGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACTAAAATACCCCAGAA
*
21579970 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACTA-AAATACCCCAGAA
21579996 GGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGACTAAAATACCCC-AGAA
** * ** *
21580023 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTAAAATACCCCAGAA
* * **
21580050 GGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGACTAAAATACCC-CAGAA
*
21580077 GGGTAAAATTACTAAAATA-CCCA-AA
1 GGGTAAAATGACTAAAATACCCCAGAA
* * * *
21580102 GGATAAAATGATCGAAATTACCTCAG-A
1 GGGTAAAATGA-CTAAAATACCCCAGAA
*
21580129 GGGTAAAATGACTGAAATA-CCC-GAA
1 GGGTAAAATGACTAAAATACCCCAGAA
* *
21580154 GGGTAAAATGTCTAAAATACCCCCA-TA
1 GGGTAAAATGACTAAAATA-CCCCAGAA
21580181 GGGTAAAATGACT
1 GGGTAAAATGACT
21580194 GTTATACCCT
Statistics
Matches: 201, Mismatches: 34, Indels: 31
0.76 0.13 0.12
Matches are distributed among these distances:
24 1 0.00
25 32 0.16
26 47 0.23
27 121 0.60
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (27 bp):
GGGTAAAATGACTAAAATACCCCAGAA
Found at i:21579980 original size:53 final size:52
Alignment explanation
Indices: 21579917--21580192 Score: 249
Period size: 53 Copynumber: 5.2 Consensus size: 52
21579907 TGCGATTCAT
21579917 GGGTAAAATGACGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAA
1 GGGTAAAATGACGAAATA-CCCTAAAGGGTAAAATGACCAAAATACCCCAGAA
* * *
21579970 GGGTAAAATGATAGAAATACCCTAGAGGGTAAAATGACTAAAATACCCCTA-AA
1 GGGTAAAATGA-CGAAATACCCTAAAGGGTAAAATGACCAAAATACCCC-AGAA
* ** * * *
21580023 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTC-GAA
1 GGGTAAAATGA-CGAAATACCC-TAAAGGGTAAAATGACCAAAATACCC-CAGAA
* * * * * *
21580077 GGGTAAAATTACTAAAATACCC-AAAGGATAAAATGATCGAAATTACCTCAG-A
1 GGGTAAAATGAC-GAAATACCCTAAAGGGTAAAATGA-CCAAAATACCCCAGAA
* * * *
21580129 GGGTAAAATGACTGAAATACCC-GAAGGGTAAAATGTCTAAAATACCCCCA-TA
1 GGGTAAAATGAC-GAAATACCCTAAAGGGTAAAATGACCAAAATA-CCCCAGAA
21580181 GGGTAAAATGAC
1 GGGTAAAATGAC
21580193 TGTTATACCC
Statistics
Matches: 183, Mismatches: 30, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
51 6 0.03
52 60 0.33
53 69 0.38
54 47 0.26
55 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.19
Consensus pattern (52 bp):
GGGTAAAATGACGAAATACCCTAAAGGGTAAAATGACCAAAATACCCCAGAA
Found at i:21580188 original size:79 final size:78
Alignment explanation
Indices: 21579917--21580192 Score: 308
Period size: 79 Copynumber: 3.5 Consensus size: 78
21579907 TGCGATTCAT
* * * * *
21579917 GGGTAAAATGAC-GAAATACCCCTAAAGGGTAAAATGACCAAAATACCCCAGAAGGGTAAAATGA
1 GGGTAAAATGACTAAAATACCCCCAAAGGGTAAAATGACGAAATTACCTCAG-AGGGTAAAATGA
*
21579981 -TAGAAATACCCTAGA
65 CT-GAAATACCCGA-A
* * ** * *
21579996 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGA
1 GGGTAAAATGACTAAAATACCCCCAAAGGGTAAAATGA-CGAAATTACCTCAGAGGGTAAAATGA
*
21580061 CCGAAATACCCTCGAA
65 CTGAAATA-CC-CGAA
* *
21580077 GGGTAAAATTACTAAAATA--CCCAAAGGATAAAATGATCGAAATTACCTCAGAGGGTAAAATGA
1 GGGTAAAATGACTAAAATACCCCCAAAGGGTAAAATGA-CGAAATTACCTCAGAGGGTAAAATGA
21580140 CTGAAATACCCGAA
65 CTGAAATACCCGAA
* *
21580154 GGGTAAAATGTCTAAAATACCCCCATAGGGTAAAATGAC
1 GGGTAAAATGACTAAAATACCCCCAAAGGGTAAAATGAC
21580193 TGTTATACCC
Statistics
Matches: 165, Mismatches: 25, Indels: 15
0.80 0.12 0.07
Matches are distributed among these distances:
77 21 0.13
78 3 0.02
79 70 0.42
80 40 0.24
81 29 0.18
82 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.19
Consensus pattern (78 bp):
GGGTAAAATGACTAAAATACCCCCAAAGGGTAAAATGACGAAATTACCTCAGAGGGTAAAATGAC
TGAAATACCCGAA
Found at i:21580202 original size:52 final size:52
Alignment explanation
Indices: 21579917--21580194 Score: 249
Period size: 52 Copynumber: 5.3 Consensus size: 52
21579907 TGCGATTCAT
*
21579917 GGGTAAAATGAC-GAAATACCCCTAAAGGGTAAAATGACCAAAATA-CCCCAGAA
1 GGGTAAAATGACTGAAATA-CCC-GAAGGGTAAAATGACCAAAATACCCCCA-AA
* * *
21579970 GGGTAAAATGA-TAGAAATACCCTAGAGGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACT-GAAATACCCGA-AGGGTAAAATGACCAAAATACCCCCAAA
* * * * * * * *
21580023 GGGTAAAATGACCGAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTCGAA
1 GGGTAAAATGACTGAAATACCC--GAAGGGTAAAATGACCAAAATACCCCCAAA
* * * * * * * *
21580077 GGGTAAAATTACTAAAATACCCAAAGGATAAAATGATCGAAATTA-CCTCAGA
1 GGGTAAAATGACTGAAATACCCGAAGGGTAAAATGA-CCAAAATACCCCCAAA
* * *
21580129 GGGTAAAATGACTGAAATACCCGAAGGGTAAAATGTCTAAAATACCCCCATA
1 GGGTAAAATGACTGAAATACCCGAAGGGTAAAATGACCAAAATACCCCCAAA
21580181 GGGTAAAATGACTG
1 GGGTAAAATGACTG
21580195 TTATACCCTT
Statistics
Matches: 180, Mismatches: 36, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
51 6 0.03
52 66 0.37
53 59 0.33
54 49 0.27
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.19
Consensus pattern (52 bp):
GGGTAAAATGACTGAAATACCCGAAGGGTAAAATGACCAAAATACCCCCAAA
Found at i:21581109 original size:27 final size:26
Alignment explanation
Indices: 21581071--21581399 Score: 204
Period size: 27 Copynumber: 12.5 Consensus size: 26
21581061 GCCGATTCAT
21581071 GGGTAAAATGACCGAAATATCCCCTAA
1 GGGTAAAATGACCGAAATA-CCCCTAA
* **
21581098 GGGTAAAATGACCAAAATACCCAGAA
1 GGGTAAAATGACCGAAATACCCCTAA
** *
21581124 GGGTAAAATGATAGAAATACCCTTGAA
1 GGGTAAAATGACCGAAATACCCCT-AA
**
21581151 GGGT-AAATGATTGAAATA-CCCTAGA
1 GGGTAAAATGACCGAAATACCCCTA-A
**
21581176 GGGTAAAATGACTAAAATA-CCCTAAA
1 GGGTAAAATGACCGAAATACCCCT-AA
* * *
21581202 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACCGAAATACCCCT-AA
* * * *
21581229 GGTTTAAATGACCGAAATACCCTCGAG
1 GGGTAAAATGACCGAAATACCC-CTAA
* ** *
21581256 GGGTAAAATTACTAAAATACCCTCAAA
1 GGGTAAAATGACCGAAATACCC-CTAA
* ** * *
21581283 GGATAAAATGATTGAAATTACCTCAAA
1 GGGTAAAATGACCGAAA-TACCCCTAA
* * *
21581310 GGATAAAATGATCGAAATTACCTC-AGA
1 GGGTAAAATGACCGAAA-TACCCCTA-A
* **
21581337 TGGGTAAAATGACTGAAATACCCAGAA
1 -GGGTAAAATGACCGAAATACCCCTAA
*
21581364 GGGT-AAATGA-CTAAATACCCC-ATA
1 GGGTAAAATGACCGAAATACCCCTA-A
21581388 GGGTAAAATGAC
1 GGGTAAAATGAC
21581400 TGTTATACGC
Statistics
Matches: 243, Mismatches: 46, Indels: 27
0.77 0.15 0.09
Matches are distributed among these distances:
23 1 0.00
24 14 0.06
25 20 0.08
26 75 0.31
27 114 0.47
28 19 0.08
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.21
Consensus pattern (26 bp):
GGGTAAAATGACCGAAATACCCCTAA
Found at i:21582432 original size:81 final size:79
Alignment explanation
Indices: 21582274--21582552 Score: 310
Period size: 81 Copynumber: 3.5 Consensus size: 79
21582264 TTCGATTCAT
** * *
21582274 GGGTAAAATGACCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCC-CAAAGGGTAAAATGA
1 GGGTAAAATGACTAAAATACCCC-AAAGGGTAAAATGACCAAAATTCCCTCAGAGGGTAAAATG-
*
21582338 ATAGAAATAACCCTAGA
64 ACAGAAAT-ACCCTAGA
* ** * *
21582355 GGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGGAGGTTTTAAATG
1 GGGTAAAATGACTAAAATACCCC-AAAGGGTAAAATGACCAAAATTCCCTCAGAGG-GTAAAATG
* *
21582420 ACCGAAATACCCTCAAA
64 ACAGAAATACCCT-AGA
* * * *
21582437 GGGTAAAATTACTAAAATACCCCAAAGGAT-AAATGATCAAAATTACCTCAGAGGGTAAAATGAC
1 GGGTAAAATGACTAAAATACCCCAAAGGGTAAAATGACCAAAATTCCCTCAGAGGGTAAAATGAC
* *
21582501 TGAAATACCCCAGA
66 AGAAATACCCTAGA
* *
21582515 AGGTAAAATGACTAAAATACCCCATAGGGTAAAATGAC
1 GGGTAAAATGACTAAAATACCCCAAAGGGTAAAATGAC
21582553 TGTTATACCC
Statistics
Matches: 165, Mismatches: 29, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
78 28 0.17
79 23 0.14
80 19 0.12
81 56 0.34
82 33 0.20
83 6 0.04
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.19
Consensus pattern (79 bp):
GGGTAAAATGACTAAAATACCCCAAAGGGTAAAATGACCAAAATTCCCTCAGAGGGTAAAATGAC
AGAAATACCCTAGA
Found at i:21582553 original size:26 final size:26
Alignment explanation
Indices: 21582274--21582553 Score: 251
Period size: 27 Copynumber: 10.5 Consensus size: 26
21582264 TTCGATTCAT
**
21582274 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCC-AAA
*
21582301 GGGTAAAATGACCAAAATACCCCAAA
1 GGGTAAAATGACTAAAATACCCCAAA
* * *
21582327 GGGTAAAATGAATAGAAATAACCCTAGA
1 GGGTAAAATGACTA-AAAT-ACCCCAAA
21582355 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCC-AAA
** * ***
21582382 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTAAAATACCC-CAAA
* * **
21582409 GGTTTTAAATGACCGAAATACCCTCAAA
1 GG-GTAAAATGACTAAAATACCC-CAAA
*
21582437 GGGTAAAATTACTAAAATACCCCAAA
1 GGGTAAAATGACTAAAATACCCCAAA
* * *
21582463 GGAT-AAATGA-TCAAAATTACCTCAGA
1 GGGTAAAATGACT-AAAA-TACCCCAAA
*
21582489 GGGTAAAATGACTGAAATACCCCAGAA
1 GGGTAAAATGACTAAAATACCCCA-AA
*
21582516 -GGTAAAATGACTAAAATACCCCATA
1 GGGTAAAATGACTAAAATACCCCAAA
21582541 GGGTAAAATGACT
1 GGGTAAAATGACT
21582554 GTTATACCCT
Statistics
Matches: 207, Mismatches: 35, Indels: 23
0.78 0.13 0.09
Matches are distributed among these distances:
24 1 0.00
25 10 0.05
26 76 0.37
27 79 0.38
28 41 0.20
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.19
Consensus pattern (26 bp):
GGGTAAAATGACTAAAATACCCCAAA
Found at i:21582562 original size:26 final size:26
Alignment explanation
Indices: 21582274--21582554 Score: 233
Period size: 26 Copynumber: 10.5 Consensus size: 26
21582264 TTCGATTCAT
* *
21582274 GGGTAAAATGACCGAAATACCCCTAAA
1 GGGTAAAATGACTGAAATACCCC-AGA
** *
21582301 GGGTAAAATGACCAAAATACCCCAAA
1 GGGTAAAATGACTGAAATACCCCAGA
* *
21582327 GGGTAAAATGAATAGAAATAACCCTAGA
1 GGGTAAAATGACT-GAAAT-ACCCCAGA
* *
21582355 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACTGAAATACCCC-AGA
* * **
21582382 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCC-CAGA
* * * *
21582409 GGTTTTAAATGACCGAAATACCCTCAAA
1 GG-GTAAAATGACTGAAATACCC-CAGA
* * *
21582437 GGGTAAAATTACTAAAATACCCCAAA
1 GGGTAAAATGACTGAAATACCCCAGA
* * *
21582463 GGAT-AAATGA-TCAAAATTACCTCAGA
1 GGGTAAAATGACT-GAAA-TACCCCAGA
21582489 GGGTAAAATGACTGAAATACCCCAGA
1 GGGTAAAATGACTGAAATACCCCAGA
* * *
21582515 AGGTAAAATGACTAAAATACCCCATA
1 GGGTAAAATGACTGAAATACCCCAGA
21582541 GGGTAAAATGACTG
1 GGGTAAAATGACTG
21582555 TTATACCCTT
Statistics
Matches: 206, Mismatches: 39, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
24 1 0.00
25 9 0.04
26 78 0.38
27 78 0.38
28 40 0.19
ACGTcount: A:0.45, C:0.18, G:0.18, T:0.19
Consensus pattern (26 bp):
GGGTAAAATGACTGAAATACCCCAGA
Found at i:21583511 original size:27 final size:26
Alignment explanation
Indices: 21583438--21583723 Score: 176
Period size: 26 Copynumber: 11.0 Consensus size: 26
21583428 AAAATAACCG
*
21583438 AAATACCCTAAAGGGTAAAATGACCA
1 AAATACCCTAAAGGGTAAAATGACTA
* *
21583464 AAATACCCCAGAGGGTAAAATGA-TA
1 AAATACCCTAAAGGGTAAAATGACTA
*
21583489 GAAATACACCTAGAGGGTAAAATGACT-
1 -AAATAC-CCTAAAGGGTAAAATGACTA
21583516 AAATACCCCTAAAGGGTAAAATGACT-
1 AAATA-CCCTAAAGGGTAAAATGACTA
* * * ** * * **
21583542 GAATTCCTTGGA-GTTTAAATGACCG
1 AAATACCCTAAAGGGTAAAATGACTA
*
21583567 AAATACCCTCAAAGGGTAAAATTACT-
1 AAATACCCT-AAAGGGTAAAATGACTA
* *
21583593 AAATACCCTCAAAGGATAAAATGATTGA
1 AAATACCCT-AAAGGGTAAAATGACT-A
* * *
21583621 AATTA-CCTCAAAGGATAAAATGATCGA
1 AAATACCCT-AAAGGGTAAAATGA-CTA
* * *
21583648 AATTA-CCTCAGAGGGTAAAATGACTG
1 AAATACCCT-AAAGGGTAAAATGACTA
* * *
21583674 AAATACCCCAAAGGAT-AAA-GTCTA
1 AAATACCCTAAAGGGTAAAATGACTA
* *
21583698 AAATACCCCCATAGGGTAAAATGACT
1 AAATA-CCCTAAAGGGTAAAATGACT
21583724 GTTATACCCT
Statistics
Matches: 205, Mismatches: 41, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
24 17 0.08
25 23 0.11
26 90 0.44
27 70 0.34
28 5 0.02
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (26 bp):
AAATACCCTAAAGGGTAAAATGACTA
Found at i:21583532 original size:53 final size:51
Alignment explanation
Indices: 21583437--21583723 Score: 203
Period size: 53 Copynumber: 5.5 Consensus size: 51
21583427 TAAAATAACC
* * *
21583437 GAAATACCCTAAAGGGTAAAATGACCAAAATACCCCAGAGGGTAAAATGATA
1 GAAATACCCTAGAGGGTAAAATGA-CTAAATACCCCAAAGGGTAAAATGATA
21583489 GAAATACACCTAGAGGGTAAAATGACTAAATACCCCTAAAGGGTAAAATGACT-
1 GAAATAC-CCTAGAGGGTAAAATGACTAAATACCCC-AAAGGGTAAAATGA-TA
* * * * * *
21583542 G-AATTCCTTGGA-GTTTAAATGACCGAAATACCCTCAAAGGGTAAAAT--TA
1 GAAATACCCTAGAGGGTAAAATGA-CTAAATACCC-CAAAGGGTAAAATGATA
* * * * * * *
21583591 CTAAATACCCTCAAAGGATAAAATGATTGAAATTACCTCAAAGGATAAAATGATC
1 -GAAATACCCT-AGAGGGTAAAATGACT-AAA-TACCCCAAAGGGTAAAATGATA
* * *
21583646 GAAATTA-CCTCAGAGGGTAAAATGACTGAAATACCCCAAAGGATAAAGT-CTA
1 GAAA-TACCCT-AGAGGGTAAAATGACT-AAATACCCCAAAGGGTAAAATGATA
* *
21583698 -AAATACCCCCATAGGGTAAAATGACT
1 GAAATA-CCCTAGAGGGTAAAATGACT
21583724 GTTATACCCT
Statistics
Matches: 187, Mismatches: 31, Indels: 35
0.74 0.12 0.14
Matches are distributed among these distances:
48 1 0.01
50 10 0.05
51 49 0.26
52 26 0.14
53 69 0.37
54 29 0.16
55 3 0.02
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (51 bp):
GAAATACCCTAGAGGGTAAAATGACTAAATACCCCAAAGGGTAAAATGATA
Found at i:21584714 original size:51 final size:51
Alignment explanation
Indices: 21584603--21584720 Score: 152
Period size: 51 Copynumber: 2.3 Consensus size: 51
21584593 GATTCATGGG
*
21584603 TAAAATGACTGAAATACCCTAAGGGTAAAATGACCAAAATACCCTAGAAGGG
1 TAAAATGA-TGAAATACCCTAAGGGTAAAATGACCAAAATACCCTAGAAGGA
*
21584655 TAAAATGATAGAAATACCCTAGAGGGT-AAAT-ACTAAAATACCCTCA-AAGGA
1 TAAAATGAT-GAAATACCCTA-AGGGTAAAATGACCAAAATACCCT-AGAAGGA
21584706 TAAAATGATTGAAAT
1 TAAAATGA-TGAAAT
21584721 TAACCCAAAG
Statistics
Matches: 60, Mismatches: 2, Indels: 9
0.85 0.03 0.13
Matches are distributed among these distances:
51 30 0.50
52 25 0.42
53 5 0.08
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (51 bp):
TAAAATGATGAAATACCCTAAGGGTAAAATGACCAAAATACCCTAGAAGGA
Found at i:21584729 original size:27 final size:27
Alignment explanation
Indices: 21584699--21584794 Score: 72
Period size: 28 Copynumber: 3.6 Consensus size: 27
21584689 AAAATACCCT
21584699 CAAAGGATAAAATGATTGAAATTAACC
1 CAAAGGATAAAATGATTGAAATTAACC
* * *
21584726 CAAAGGAAAAAAATAATCGAAATT-ACC
1 CAAAGG-ATAAAATGATTGAAATTAACC
* * * *
21584753 TCAGAGGGTAAAAT-ACTGAAA-TACCC
1 -CAAAGGATAAAATGATTGAAATTAACC
*
21584779 CAGAAGGGTAAAATGA
1 CA-AAGGATAAAATGA
21584795 CTAAATCCTT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
25 3 0.06
26 17 0.31
27 15 0.28
28 19 0.35
ACGTcount: A:0.51, C:0.14, G:0.18, T:0.18
Consensus pattern (27 bp):
CAAAGGATAAAATGATTGAAATTAACC
Found at i:21584786 original size:26 final size:27
Alignment explanation
Indices: 21584600--21584973 Score: 201
Period size: 27 Copynumber: 14.5 Consensus size: 27
21584590 TGCGATTCAT
*
21584600 GGGTAAAATGACTGAAATA-CCC-TAA
1 GGGTAAAATGACTGAAATACCCCAGAA
** *
21584625 GGGTAAAATGACCAAAATACCCTAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
*
21584652 GGGTAAAATGA-TAGAAATACCCTAG-A
1 GGGTAAAATGACT-GAAATACCCCAGAA
*
21584678 GGGT-AAAT-ACTAAAATACCCTCA-AA
1 GGGTAAAATGACTGAAATACCC-CAGAA
* * *
21584703 GGATAAAATGATTGAAATTAACCCA-AA
1 GGGTAAAATGACTGAAA-TACCCCAGAA
** * *
21584730 GGAAAAAAAT-AATCGAAATTACCTCAG-A
1 GG-GTAAAATGACT-GAAA-TACCCCAGAA
21584758 GGGTAAAAT-ACTGAAATACCCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
**
21584784 GGGTAAAATGACT-AAAT--CCTTG-A
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21584807 -GTTTAAATGACCGAAAT--CCC-GAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21584830 GGGT-AAATTACTAAAATACCTCA-AA
1 GGGTAAAATGACTGAAATACCCCAGAA
* * *
21584855 GGATAAAATGATTGAAATTACCTCA-AA
1 GGGTAAAATGACTGAAA-TACCCCAGAA
** *
21584882 GGAAAAAATGA-TCGAAATTACCTCA-AA
1 GGGTAAAATGACT-GAAA-TACCCCAGAA
21584909 GGGTAAAATGACTGAAATA-CCCAGAA
1 GGGTAAAATGACTGAAATACCCCAGAA
* *
21584935 GGGTAAAATGACT-AAAAATCCCCA-TA
1 GGGTAAAATGACTGAAATA-CCCCAGAA
21584961 GGGTAAAAT-ACTG
1 GGGTAAAATGACTG
21584974 TTATACCCTT
Statistics
Matches: 280, Mismatches: 41, Indels: 55
0.74 0.11 0.15
Matches are distributed among these distances:
22 10 0.04
23 18 0.06
24 14 0.05
25 51 0.18
26 66 0.24
27 97 0.35
28 24 0.09
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.20
Consensus pattern (27 bp):
GGGTAAAATGACTGAAATACCCCAGAA
Found at i:21585890 original size:27 final size:27
Alignment explanation
Indices: 21585837--21585981 Score: 129
Period size: 27 Copynumber: 5.5 Consensus size: 27
21585827 GATTCATGGA
*
21585837 AAAATGACCGAAATACCCCTAAA-GGT
1 AAAATGACCAAAATACCCCTAAAGGGT
*
21585863 AAAATGACCAAAATACCCCAAAAGGGT
1 AAAATGACCAAAATACCCCTAAAGGGT
* * **
21585890 AAAATGA-TAGAAATACCCTTGCA-GGT
1 AAAATGACCA-AAATACCCCTAAAGGGT
* *** *
21585916 AAATTGATTGAAAT--CCCTAGAGGGT
1 AAAATGACCAAAATACCCCTAAAGGGT
*
21585941 AAAATGACTAAAATACCCCTAAAGGGT
1 AAAATGACCAAAATACCCCTAAAGGGT
*
21585968 AAAATGACCGAAAT
1 AAAATGACCAAAAT
21585982 TCCTTGGAGG
Statistics
Matches: 95, Mismatches: 18, Indels: 11
0.77 0.15 0.09
Matches are distributed among these distances:
24 4 0.04
25 14 0.15
26 35 0.37
27 42 0.44
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.19
Consensus pattern (27 bp):
AAAATGACCAAAATACCCCTAAAGGGT
Found at i:21586079 original size:79 final size:79
Alignment explanation
Indices: 21585936--21586118 Score: 185
Period size: 79 Copynumber: 2.3 Consensus size: 79
21585926 AAATCCCTAG
* *** *
21585936 AGGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCTTGGAGGTTTAAATGA
1 AGGGTAAAATGACTAAAATACCCCTAAAGGATAAAATGACCGAAATTCCTCAAAGGATTAAATGA
21586001 CCGAATACTCTCGA
66 CCGAATACTCTCGA
* * **
21586015 AGGGTAAAATTACTAAAAATA-CCCTCAAGGATAAAATGATTGAAATTACCTCAAAGGATT-AAT
1 AGGGTAAAATGACT-AAAATACCCCTAAAGGATAAAATGACCGAAATT-CCTCAAAGGATTAAAT
*
21586078 GATCGAAATTAC-CTC-A
64 GACCG-AA-TACTCTCGA
* *
21586094 GAGGGTAAAATGATTGAAATACCCC
1 -AGGGTAAAATGACTAAAATACCCC
21586119 AGAAGGGTAA
Statistics
Matches: 85, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
79 48 0.56
80 34 0.40
81 3 0.04
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.23
Consensus pattern (79 bp):
AGGGTAAAATGACTAAAATACCCCTAAAGGATAAAATGACCGAAATTCCTCAAAGGATTAAATGA
CCGAATACTCTCGA
Found at i:21586125 original size:27 final size:27
Alignment explanation
Indices: 21585837--21586158 Score: 140
Period size: 26 Copynumber: 12.3 Consensus size: 27
21585827 GATTCATGGA
*
21585837 AAAATGACCGAAATACCCCTA-AA-GGT
1 AAAATGATCGAAATACCCC-AGAAGGGT
* * *
21585863 AAAATGACCAAAATACCCCAAAAGGGT
1 AAAATGATCGAAATACCCCAGAAGGGT
* ** *
21585890 AAAATGATAGAAATACCCTTGCA-GGT
1 AAAATGATCGAAATACCCCAGAAGGGT
* * *
21585916 AAATTGATTGAAAT-CCCTAG-AGGGT
1 AAAATGATCGAAATACCCCAGAAGGGT
*
21585941 AAAATGA-CTAAAATACCCCTA-AAGGGT
1 AAAATGATC-GAAATACCCC-AGAAGGGT
* * ** * *
21585968 AAAATGACCGAAAT-TCCTTGGAGGTT
1 AAAATGATCGAAATACCCCAGAAGGGT
* * *
21585994 TAAATGACCG-AATACTCTC-GAAGGGT
1 AAAATGATCGAAATAC-CCCAGAAGGGT
* ** *
21586020 AAAATTACTAAAAATACCCTC--AAGGAT
1 AAAATGA-TCGAAATACCC-CAGAAGGGT
* * *
21586047 AAAATGATTGAAATTACCTCA-AAGGAT
1 AAAATGATCGAAA-TACCCCAGAAGGGT
* *
21586074 -TAATGATCGAAATTACCTCAG-AGGGT
1 AAAATGATCGAAA-TACCCCAGAAGGGT
*
21586100 AAAATGATTGAAATACCCCAGAAGGGT
1 AAAATGATCGAAATACCCCAGAAGGGT
**
21586127 -AAATGACTAAAAATACCCC--AAGGGT
1 AAAATGA-TCGAAATACCCCAGAAGGGT
21586152 AAAATGA
1 AAAATGA
21586159 CTGTTATACC
Statistics
Matches: 229, Mismatches: 46, Indels: 42
0.72 0.15 0.13
Matches are distributed among these distances:
24 1 0.00
25 28 0.12
26 109 0.48
27 84 0.37
28 7 0.03
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (27 bp):
AAAATGATCGAAATACCCCAGAAGGGT
Found at i:21587131 original size:80 final size:79
Alignment explanation
Indices: 21587041--21587341 Score: 256
Period size: 80 Copynumber: 3.8 Consensus size: 79
21587031 TAAAATACCG
* *
21587041 AAATACCCCTAAAGAGTAAAATGACCAAAATACCCCAAAAGGGTAAAATGATAGAAATACCCTTG
1 AAATA-CCCTAAAGGGTAAAATGACTAAAATACCCC-AAAGGGTAAAATGATAGAAATACCCTTG
21587106 CAGG-GTAAATTGACTA
64 CAGGTGTAAA-TGACTA
* ** * *
21587122 AAATACCCTAGAGGGTAAAATGACTAAAATACCCCTAAAGGGTAAAATGACCGAAATTCCCTTGG
1 AAATACCCTAAAGGGTAAAATGACTAAAATACCCC-AAAGGGTAAAATGATAGAAATACCCTTGC
* *
21587187 AGGTTTAAATGACTG
65 AGGTGTAAATGACTA
* * * * * **
21587202 AAATACCCTCAAAGGGT-AAATTACTAAAATACCCTCAATGGATAAAATGATTGAATTA-CCTCA
1 AAATACCCT-AAAGGGTAAAATGACTAAAATACCC-CAAAGGGTAAAATGATAGAAATACCCTTG
* * *
21587265 AAGGAT-AAAATGATCGA
64 CAGG-TGTAAATGA-CTA
* * *
21587282 AATTA-CCTCAGAGGGTAAAATGACTGAAATACCCCAGAA-GGTAAAATGACTA-AAATACCC
1 AAATACCCT-AAAGGGTAAAATGACTAAAATACCCCA-AAGGGTAAAATGA-TAGAAATACCC
21587342 CCATAGGGTA
Statistics
Matches: 179, Mismatches: 32, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
79 37 0.21
80 126 0.70
81 16 0.09
ACGTcount: A:0.45, C:0.18, G:0.17, T:0.21
Consensus pattern (79 bp):
AAATACCCTAAAGGGTAAAATGACTAAAATACCCCAAAGGGTAAAATGATAGAAATACCCTTGCA
GGTGTAAATGACTA
Found at i:21587139 original size:53 final size:53
Alignment explanation
Indices: 21587028--21587369 Score: 272
Period size: 53 Copynumber: 6.4 Consensus size: 53
21587018 TGCGATTCAT
* * * * *
21587028 GGGTAAAAT-ACCGAAATACCC-CTAAAGAGTAAAATGACCAAAATACCCCAAAA
1 GGGTAAAATGACTGAAATACCCTC-AAAGGGTAAAATGACTAAAATA-CCCTAGA
*** *
21587081 GGGTAAAATGA-TAGAAATACCCTTGCAGGGTAAATTGACTAAAATACCCTAGA
1 GGGTAAAATGACT-GAAATACCCTCAAAGGGTAAAATGACTAAAATACCCTAGA
* ** * *
21587134 GGGTAAAATGACTAAAATACCC-CTAAAGGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCTC-AAAGGGTAAAATGACTAAAATACCC-TAGA
* * *
21587188 GGTTTAAATGACTGAAATACCCTCAAAGGGT-AAATTACTAAAATACCCTCA-A
1 GGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGACTAAAATACCCT-AGA
* * * * * *
21587240 TGGATAAAATGATTGAATTA-CCTCAAAGGATAAAATGATCGAAATTA-CCTCAGA
1 -GGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGA-CTAAAATACCCT-AGA
* *
21587294 GGGTAAAATGACTGAAATACCC-CAGAA-GGTAAAATGACTAAAATACCCCCATA
1 GGGTAAAATGACTGAAATACCCTCA-AAGGGTAAAATGACTAAAATA-CCCTAGA
**
21587347 GGGTAAAATGACTGTTATACCCT
1 GGGTAAAATGACTGAAATACCCT
21587370 TAGGAGATCA
Statistics
Matches: 228, Mismatches: 44, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
52 18 0.08
53 139 0.61
54 70 0.31
55 1 0.00
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.21
Consensus pattern (53 bp):
GGGTAAAATGACTGAAATACCCTCAAAGGGTAAAATGACTAAAATACCCTAGA
Found at i:21587359 original size:27 final size:27
Alignment explanation
Indices: 21587028--21587359 Score: 221
Period size: 27 Copynumber: 12.5 Consensus size: 27
21587018 TGCGATTCAT
** *
21587028 GGGTAAAAT-ACCGAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCCCAAA
* * *
21587054 GAGTAAAATGACCAAAATACCCCAAAA
1 GGGTAAAATGACTAAAATACCCCCAAA
****
21587081 GGGTAAAATGA-TAGAAATACCCTTGCA
1 GGGTAAAATGACTA-AAATACCCCCAAA
* * *
21587108 GGGTAAATTGACTAAAATA-CCCTAGA
1 GGGTAAAATGACTAAAATACCCCCAAA
*
21587134 GGGTAAAATGACTAAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCCCAAA
** * ****
21587161 GGGTAAAATGACCGAAATTCCCTTGGA
1 GGGTAAAATGACTAAAATACCCCCAAA
* * * *
21587188 GGTTTAAATGACTGAAATACCCTCAAA
1 GGGTAAAATGACTAAAATACCCCCAAA
* * *
21587215 GGGT-AAATTACTAAAATACCCTCAAT
1 GGGTAAAATGACTAAAATACCCCCAAA
* * * * *
21587241 GGATAAAATGATTGAATTA-CCTCAAA
1 GGGTAAAATGACTAAAATACCCCCAAA
* * * * *
21587267 GGATAAAATGATCGAAATTA-CCTCAGA
1 GGGTAAAATGA-CTAAAATACCCCCAAA
*
21587294 GGGTAAAATGACTGAAATA-CCCCAGAA
1 GGGTAAAATGACTAAAATACCCCCA-AA
*
21587321 -GGTAAAATGACTAAAATACCCCCATA
1 GGGTAAAATGACTAAAATACCCCCAAA
21587347 GGGTAAAATGACT
1 GGGTAAAATGACT
21587360 GTTATACCCT
Statistics
Matches: 247, Mismatches: 50, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
26 97 0.39
27 148 0.60
28 2 0.01
ACGTcount: A:0.44, C:0.18, G:0.17, T:0.21
Consensus pattern (27 bp):
GGGTAAAATGACTAAAATACCCCCAAA
Found at i:21588295 original size:27 final size:27
Alignment explanation
Indices: 21588236--21588539 Score: 243
Period size: 27 Copynumber: 11.4 Consensus size: 27
21588226 TGCGATTCAT
* *
21588236 GGTAAAATGAC-GAAATA-CCC-TAAG
1 GGTAAAATGACTAAAATACCCCAGAAG
* *
21588260 AGTAAAATGACCAAAATACCCCAGAAG
1 GGTAAAATGACTAAAATACCCCAGAAG
*
21588287 GGTAAAATGA-TAGAAATACCCTAG-AG
1 GGTAAAATGACTA-AAATACCCCAGAAG
*
21588313 GGTAAAATGACTAAAATACCCTAG-AG
1 GGTAAAATGACTAAAATACCCCAGAAG
* ** *
21588339 GGTAAAATGACTAAAATTCCCTTGGAG
1 GGTAAAATGACTAAAATACCCCAGAAG
* * **
21588366 GTTTAAATGACCGAAATACCCTC-GAAG
1 GGTAAAATGACTAAAATACCC-CAGAAG
*
21588393 GGTAAAATTACTAAAATACCCACA-AAG
1 GGTAAAATGACTAAAATACCC-CAGAAG
* * * *
21588420 GATAAAATGATTGAAATTACCTCA-AAG
1 GGTAAAATGACT-AAAATACCCCAGAAG
* * * * *
21588447 GATAAAATGATCGAAATTACCTCAG-TG
1 GGTAAAATGA-CTAAAATACCCCAGAAG
*
21588474 GGTAAAATGACTGAAATACCCCAGAAG
1 GGTAAAATGACTAAAATACCCCAGAAG
*
21588501 GGTAAAATGACTAAAATACCCCCA-TAG
1 GGTAAAATGACTAAAATA-CCCCAGAAG
21588528 GGTAAAATGACT
1 GGTAAAATGACT
21588540 GTTATACCCT
Statistics
Matches: 230, Mismatches: 37, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
24 10 0.04
25 5 0.02
26 61 0.27
27 142 0.62
28 12 0.05
ACGTcount: A:0.45, C:0.17, G:0.18, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACTAAAATACCCCAGAAG
Found at i:21588428 original size:54 final size:54
Alignment explanation
Indices: 21588236--21588549 Score: 279
Period size: 54 Copynumber: 5.9 Consensus size: 54
21588226 TGCGATTCAT
* * **
21588236 GGTAAAATGAC-GAAATACCCT-A-AGAGTAAAATGACCAAAATACCC-CAGAAG
1 GGTAAAATGACTAAAATACCCTCAGAGGGTAAAATGACTGAAATACCCTC-GAAG
* *
21588287 GGTAAAATGA-TAGAAATACCCT-AGAGGGTAAAATGACTAAAATACCCTAG-AG
1 GGTAAAATGACTA-AAATACCCTCAGAGGGTAAAATGACTGAAATACCCTCGAAG
* ** * * *
21588339 GGTAAAATGACTAAAATTCCCTTGGAGGTTTAAATGACCGAAATACCCTCGAAG
1 GGTAAAATGACTAAAATACCCTCAGAGGGTAAAATGACTGAAATACCCTCGAAG
* * * * * *
21588393 GGTAAAATTACTAAAATACCCACAAAGGATAAAATGATTGAAATTA-CCTCAAAG
1 GGTAAAATGACTAAAATACCCTCAGAGGGTAAAATGACTGAAA-TACCCTCGAAG
* * * *
21588447 GATAAAATGATCGAAATTA-CCTCAGTGGGTAAAATGACTGAAATACCC-CAGAAG
1 GGTAAAATGA-CTAAAATACCCTCAGAGGGTAAAATGACTGAAATACCCTC-GAAG
* * **
21588501 GGTAAAATGACTAAAATACCCCCATAGGGTAAAATGACTGTTATACCCT
1 GGTAAAATGACTAAAATACCCTCAGAGGGTAAAATGACTGAAATACCCT
21588550 TAGGAGATCA
Statistics
Matches: 210, Mismatches: 40, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
51 10 0.05
52 30 0.14
53 55 0.26
54 107 0.51
55 8 0.04
ACGTcount: A:0.44, C:0.17, G:0.18, T:0.21
Consensus pattern (54 bp):
GGTAAAATGACTAAAATACCCTCAGAGGGTAAAATGACTGAAATACCCTCGAAG
Found at i:21589465 original size:27 final size:27
Alignment explanation
Indices: 21589421--21589756 Score: 231
Period size: 27 Copynumber: 12.5 Consensus size: 27
21589411 TACGATTCAT
* **
21589421 GGGTAAAATGGCCGAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCCTAAA
* *
21589448 GGGTAAAATGACCAAAATA-CCCTAGAT
1 GGGTAAAATGACTAAAATACCCCTA-AA
* *
21589475 GGGTAAAATGA-TAGAAATACCCTTGAA
1 GGGTAAAATGACTA-AAATACCCCTAAA
*
21589502 GGGTAAAATGA-TAGAAATA-CCCTAGA
1 GGGTAAAATGACTA-AAATACCCCTAAA
*
21589528 GGGTAAAATGACAAAAATACCCCTAAA
1 GGGTAAAATGACTAAAATACCCCTAAA
* * * **
21589555 GGGTAAAATGACCAAAATTCCCTTGGA
1 GGGTAAAATGACTAAAATACCCCTAAA
* * ** *
21589582 GGTTTAAATGACCGAAATA-CCCTCGAA
1 GGGTAAAATGACTAAAATACCCCT-AAA
*
21589609 GGGTAAAATTACTAAAATA-CCCTCAAA
1 GGGTAAAATGACTAAAATACCCCT-AAA
* * * * *
21589636 AGATAAAATGATTGAAATTACCTC-AAA
1 GGGTAAAATGACT-AAAATACCCCTAAA
* * * * *
21589663 GGATAAAATGATTGAAATTACCTC-AGA
1 GGGTAAAATGACT-AAAATACCCCTAAA
*
21589690 GGGTAAAATGACTGAAATACCCC-AGAA
1 GGGTAAAATGACTAAAATACCCCTA-AA
* * *
21589717 GGGTAAAATGATTAAAATACCCCCATA
1 GGGTAAAATGACTAAAATACCCCTAAA
21589744 GGGTAAAATGACT
1 GGGTAAAATGACT
21589757 GTTATACCCT
Statistics
Matches: 252, Mismatches: 47, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
26 37 0.15
27 204 0.81
28 9 0.04
29 2 0.01
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.21
Consensus pattern (27 bp):
GGGTAAAATGACTAAAATACCCCTAAA
Found at i:21589672 original size:81 final size:81
Alignment explanation
Indices: 21589424--21589734 Score: 278
Period size: 81 Copynumber: 3.9 Consensus size: 81
21589414 GATTCATGGG
* * * * *
21589424 TAAAATGGCCGAAATACCC-CTAAAGGGTAAAATGACCAAAATACCCTAGATGGGTAAAATGA-T
1 TAAAATGACCGAAATACCCTC-GAAGGGTAAAATGACTAAAATACCCCAGAAGGGTAAAATGATT
*
21589487 AGAAA-TACCCTTGAAGGG
65 A-AAATTA-CCTTGAAGGA
** * * **
21589505 TAAAATGATAGAAATACCCTAG-AGGGTAAAATGACAAAAATACCCCTA-AAGGGTAAAATGACC
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCC-AGAAGGGTAAAATGATT
* * *
21589568 AAAATTCCCTTGGAGGT
65 AAAATTACCTTGAAGGA
* * * *
21589585 TTAAATGACCGAAATACCCTCGAAGGGTAAAATTACTAAAATACCCTCA-AAAGATAAAATGATT
1 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCC-CAGAAGGGTAAAATGATT
* **
21589649 GAAATTACCTCAAAGGA
65 AAAATTACCTTGAAGGA
** *
21589666 TAAAATGATTGAAATTA-CCTC-AGAGGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGAT
1 TAAAATGACCGAAA-TACCCTCGA-AGGGTAAAATGACTAAAATACCCCAGAAGGGTAAAATGAT
21589729 TAAAAT
64 TAAAAT
21589735 ACCCCCATAG
Statistics
Matches: 185, Mismatches: 36, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
80 66 0.36
81 116 0.63
82 3 0.02
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (81 bp):
TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCCAGAAGGGTAAAATGATTA
AAATTACCTTGAAGGA
Found at i:21589765 original size:54 final size:52
Alignment explanation
Indices: 21589421--21589757 Score: 282
Period size: 54 Copynumber: 6.3 Consensus size: 52
21589411 TACGATTCAT
* * * *
21589421 GGGTAAAATGGCCGAAATACCCCTAAAGGGTAAAATGACCAAAATACCCTAGA
1 GGGTAAAATGACTGAAATACCCC-AAAGGGTAAAATGACTAAAATACCCCAGA
** *
21589474 TGGGTAAAATGA-TAGAAATACCCTTGAAGGGTAAAATGA-TAGAAATACCCTAGA
1 -GGGTAAAATGACT-GAAATACCC-CAAAGGGTAAAATGACTA-AAATACCCCAGA
** * * **
21589528 GGGTAAAATGACAAAAATACCCCTAAAGGGTAAAATGACCAAAATTCCCTTGGA
1 GGGTAAAATGACTGAAATACCCC-AAAGGGTAAAATGACTAAAATACCC-CAGA
* * * * * *
21589582 GGTTTAAATGACCGAAATACCCTCGAAGGGTAAAATTACTAAAATACCCTCAAA
1 GGGTAAAATGACTGAAATACCC-CAAAGGGTAAAATGACTAAAATACCC-CAGA
* * * * * * * *
21589636 AGATAAAATGATTGAAATTACCTCAAAGGATAAAATGATTGAAATTACCTCAGA
1 GGGTAAAATGACTGAAA-TACCCCAAAGGGTAAAATGACT-AAAATACCCCAGA
* *
21589690 GGGTAAAATGACTGAAATACCCCAGAAGGGTAAAATGATTAAAATACCCCCATA
1 GGGTAAAATGACTGAAATACCCCA-AAGGGTAAAATGACTAAAATA-CCCCAGA
21589744 GGGTAAAATGACTG
1 GGGTAAAATGACTG
21589758 TTATACCCTT
Statistics
Matches: 227, Mismatches: 44, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
53 51 0.22
54 164 0.72
55 12 0.05
ACGTcount: A:0.44, C:0.16, G:0.19, T:0.20
Consensus pattern (52 bp):
GGGTAAAATGACTGAAATACCCCAAAGGGTAAAATGACTAAAATACCCCAGA
Found at i:21590126 original size:28 final size:28
Alignment explanation
Indices: 21590095--21590154 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
21590085 TACTTTTTTG
*
21590095 CACTGTTACTGTATTGGGCTAAGACCCA
1 CACTGTTACTATATTGGGCTAAGACCCA
* *
21590123 CACTGTTACTATTTTGGGCTAAGGCCCA
1 CACTGTTACTATATTGGGCTAAGACCCA
21590151 CACT
1 CACT
21590155 ACACTGTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (28 bp):
CACTGTTACTATATTGGGCTAAGACCCA
Found at i:21606452 original size:27 final size:28
Alignment explanation
Indices: 21606416--21606470 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
21606406 TCAAAATTCA
*
21606416 CACTTTAATTA-TAAAATAATT-AATTTT
1 CACTTAAATTAGTAAAAT-ATTAAATTTT
*
21606443 CACTTAAATTAGTAACATATTAAATTTT
1 CACTTAAATTAGTAAAATATTAAATTTT
21606471 AACAAATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (28 bp):
CACTTAAATTAGTAAAATATTAAATTTT
Found at i:21624505 original size:27 final size:26
Alignment explanation
Indices: 21624466--21624906 Score: 380
Period size: 27 Copynumber: 16.4 Consensus size: 26
21624456 CCCCAAACTA
21624466 GGTAAAATGACCAAAATACCTCCATAG
1 GGTAAAATGACCAAAATACC-CCATAG
* *
21624493 AGTAAAATGACCAAAATACCTCTATAG
1 GGTAAAATGACCAAAATACC-CCATAG
* *
21624520 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCAAAATA-CCCCATAG
*
21624547 GGTAAAATGACCAAAATACCTCCATTG
1 GGTAAAATGACCAAAATACC-CCATAG
** * ** *
21624574 GGTAAAATGACTGACATACCTTTAGAG
1 GGTAAAATGACCAAAATACC-CCATAG
*
21624601 GGTAAAATGACCAAAATGCCCCCATAG
1 GGTAAAATGACCAAAAT-ACCCCATAG
* **
21624628 AGTAAAATGACTGAAATACCCCTATAG
1 GGTAAAATGACCAAAATACCCC-ATAG
**** *
21624655 GGTAAAATGAATGGAATACCCCCAAAG
1 GGTAAAATGACCAAAATA-CCCCATAG
* * *** *
21624682 GTTAGAATGATTGAAATACCCTCGTAG
1 GGTAAAATGACCAAAATACCC-CATAG
* * *
21624709 GGTAAAATGATCGAAATACCCCTATAC
1 GGTAAAATGACCAAAATACCCC-ATAG
*
21624736 GGTAAAATGATCAAAATACCCCATAG
1 GGTAAAATGACCAAAATACCCCATAG
* *
21624762 GTTAAAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCAAAATACCC-CATAG
*
21624789 GGTAAAATGACCAAAATACCCCATAA
1 GGTAAAATGACCAAAATACCCCATAG
* * *
21624815 GATAGAATGACCAAAATGCCCTCATAG
1 GGTAAAATGACCAAAATACCC-CATAG
*
21624842 GGTAGAATGA-CAGAAATACCCCCATAG
1 GGTAAAATGACCA-AAATA-CCCCATAG
* * *
21624869 AGTAGAATGACCGAAATACCCTCATAG
1 GGTAAAATGACCAAAATACCC-CATAG
21624896 GGTAAAATGAC
1 GGTAAAATGAC
21624907 TGTTATATCA
Statistics
Matches: 341, Mismatches: 60, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
26 58 0.17
27 271 0.79
28 12 0.04
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20
Consensus pattern (26 bp):
GGTAAAATGACCAAAATACCCCATAG
Found at i:21624560 original size:81 final size:79
Alignment explanation
Indices: 21624466--21624906 Score: 432
Period size: 81 Copynumber: 5.5 Consensus size: 79
21624456 CCCCAAACTA
* *
21624466 GGTAAAATGACCAAAATACCTCCATAGAGTAAAATGACCAAAATACCTCTATAGGGTAAAATGAT
1 GGTAAAATGACCAAAATACC-CCATAGGGTAAAATGACCAAAATACC-CTATAGGGTAAAATGAC
21624531 CGAAATACCCCCATAG
64 CGAAATACCCCCATAG
* ** * * *
21624547 GGTAAAATGACCAAAATACCTCCATTGGGTAAAATGACTGACATACCTTTAGAGGGTAAAATGAC
1 GGTAAAATGACCAAAATACC-CCATAGGGTAAAATGACCAAAATACC-CTATAGGGTAAAATGAC
* *
21624612 CAAAATGCCCCCATAG
64 CGAAATACCCCCATAG
* ** **** * * * * *
21624628 AGTAAAATGACTGAAATACCCCTATAGGGTAAAATGAATGGAATACCCCCAAAGGTTAGAATGAT
1 GGTAAAATGACCAAAATACCCC-ATAGGGTAAAATGACCAAAATA-CCCTATAGGGTAAAATGAC
* * *
21624693 TGAAATACCCTCGTAG
64 CGAAATACCCCCATAG
* * * * * *
21624709 GGTAAAATGATCGAAATACCCCTATACGGTAAAATGATCAAAATACCCCATAGGTTAAAATGACC
1 GGTAAAATGACCAAAATACCCC-ATAGGGTAAAATGACCAAAATACCCTATAGGGTAAAATGACC
*
21624774 GAAATACCCTCATAG
65 GAAATACCCCCATAG
* * * * * *
21624789 GGTAAAATGACCAAAATACCCCATAAGATAGAATGACCAAAATGCCCTCATAGGGTAGAATGACA
1 GGTAAAATGACCAAAATACCCCATAGGGTAAAATGACCAAAATACCCT-ATAGGGTAAAATGACC
21624854 GAAATACCCCCATAG
65 GAAATACCCCCATAG
* * *
21624869 AGTAGAATGACCGAAATACCCTCATAGGGTAAAATGAC
1 GGTAAAATGACCAAAATACCC-CATAGGGTAAAATGAC
21624907 TGTTATATCA
Statistics
Matches: 297, Mismatches: 59, Indels: 8
0.82 0.16 0.02
Matches are distributed among these distances:
79 20 0.07
80 97 0.33
81 178 0.60
82 2 0.01
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20
Consensus pattern (79 bp):
GGTAAAATGACCAAAATACCCCATAGGGTAAAATGACCAAAATACCCTATAGGGTAAAATGACCG
AAATACCCCCATAG
Found at i:21630198 original size:855 final size:854
Alignment explanation
Indices: 21628777--21631317 Score: 4027
Period size: 854 Copynumber: 2.9 Consensus size: 854
21628767 ATTTTAATTT
21628777 TTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGGGGATG
1 TTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGGGGATG
21628842 GTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTATGCAA
66 GTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTATGCAA
21628907 ATGGGATTATATTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTTGTTG
131 ATGGGATTATA-TTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTTGTTG
*
21628972 GAGATTTTGAATTGGTCTTGTGAGTTGGTTGGGGAGGATATCAAGGAAGGATAAAGGGAGAAAAT
195 GAGAGTTTGAATTGGTCTTGTGAGTTGGTT------G---T---GG-AGGAT----------AAT
* * *
21629037 CAAGGAGAGGGGGTAGAGATTTTCAAGGATTTTGAAAGCTTGAAAAGTTGTGCCGAAATAGGTAT
237 GAAGGAGAGGGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTAT
* * * *
21629102 ATCCGAAGTGTCGGAGTGGTTTTCTTGGCTTGCACTTTTATATGTTGCCATTTGGTCTTCTCTAC
302 ATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGC
*
21629167 TTGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTCCTATAG-CAGACCCTCTCTTTTACTT
367 TTGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTACTATAGTC-GACCCTCTCTTTTACTT
**
21629231 TCATCTCTACTTCTTTTCCAATTATGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTCTCT
431 TCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTCTCT
* *
21629296 CCCTCTTAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATATTCCTGACTGACTATTACTGAAAT
496 CCCTCTCAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAAT
21629361 ACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATTTCT
561 ACGTTT-TTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATTTCT
* *
21629426 TTTAGCTCTACTAACAAGCTTCGGCTTTCCCTTTTCTTTCTCTTGGGGGTCGAATGTATGGTTGT
625 TTTAGCTCTACTAACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGT
21629491 TTTCTAACAACTTTTGATCAGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGTGA
690 TTTCTAACAACTTTTGATCAGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGTGA
* * *
21629556 GGAGCTAGTATCTGTTAGATCTAGCAAGGTGAGTGCTTGAGAAGCTTGGGCTCAAGTCTTGGCTT
755 GGCGCTAGTATCTGTTAGATCTAGCAAGGTGAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTT
21629621 TGGCAAAATTTTAATTTTTGGGCTCTTAAGGGAAC
820 TGGCAAAATTTTAATTTTTGGGCTCTTAAGGGAAC
21629656 TTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGGGGATG
1 TTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGGGGATG
*
21629721 GTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCAAGTCTAACTGTATGCAA
66 GTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTATGCAA
* * * *
21629786 ATGGGATTATATTTTTTGTTTCAAGAGGAGGCAAGAGCTGGAGTTGGATTTGAACTCTATTGTTG
131 ATGGGATTATATTTTTT-TTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTTGTTG
21629851 GAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGAT-ATGAAGGAGAGGGGGTGGAGATTTT
195 GAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATAATGAAGGAGAGGGGGTGGAGATTTT
21629915 CAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATATCCGAAGTGCCGGAGTGGTTTT
260 CAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATATCCGAAGTGCCGGAGTGGTTTT
21629980 CTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCTTGAAACTTCCTACTCATCTCTT
325 CTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCTTGAAACTTCCTACTCATCTCTT
*
21630045 CTTTAATCATTTTCTACTATAGTCGACCCTATCTTTTACTTTCATCTCTACTTCTTTTCCAATTC
390 CTTTAATCATTTTCTACTATAGTCGACCCTCTCTTTTACTTTCATCTCTACTTCTTTTCCAATTC
*
21630110 CGTTATTCCTTTCTCTGTTAGGTCGAATTCTCATACTCTCTCCCTCTCAAATCTCTTTGTTCTTC
455 CGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTCTCTCCCTCTCAAATCTCTTTGTTCTTC
*
21630175 TTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAATACATTTTTTTTATGGTAAGGGGGT
520 TTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAATACGTTTTTTTTATGGTAAGGGGGT
** * * **
21630240 GTTACAACCATTTTATTATTTCATTCTTAGTTATCTTTATTTTTA-CTCTAGTAACAAGCTTCTT
585 GTTACAACCATTTTATTATTTCATTCTTAGTTAAATTT-CTTTTAGCTCTACTAACAAGCTTCGG
* *
21630304 TTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGTTTTCTATCAACTTTTGAT-ATGAC
649 TTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGTTTTCTAACAACTTTTGATCA-GCC
* *
21630368 GAATCATGTTAGCAGGGGGGATTCGCCCTTGATCAGCAGTGAGGCGCTAGTATCTGTTAGATCTG
713 GAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGTGAGGCGCTAGTATCTGTTAGATCTA
21630433 GCAAGGTGAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGC
778 GCAAGGTGAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGC
21630498 TCTTAAGGGAAC
843 TCTTAAGGGAAC
* *
21630510 TTGGATGATAGCTTGCAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGGGGATG
1 TTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGGGGATG
* * * *
21630575 GTCTAGTGGCAAGGTGGCATGTTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGTATGCAA
66 GTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTATGCAA
21630640 ATGGGATTATATTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTTGTTGG
131 ATGGGATTATATTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTTGTTGG
21630705 AGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGCGAGAAAATC
196 AGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGG--AT------A--AT-------G------
21630770 AAGGAGAGGGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATA
238 AAGGAGAGGGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATA
* * *
21630835 TCCGTAGTGCCGGAGTGGTTTTATTGGCTTACACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCT
303 TCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCT
* *
21630900 TGAAACTTCTTACTCATCTCTTCTTTAATCATTTTCTGCTATAGTCGACCCTCTCTTTTACTTTC
368 TGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTACTATAGTCGACCCTCTCTTTTACTTTC
* *
21630965 ATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTCTTAAGTCGAATTCTCATACTCTCTCC
433 ATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTCTCTCC
* * *
21631030 CTCTCAAATCTCTTTGTTTTTCTTGTTCCAGGCCAAATCTTCCTGACTGACTATTACTGAAATAC
498 CTCTCAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAATAC
* *
21631095 GTTTTTTTTATGGTAAGGAGGTGTTACAACCATTTTATTA----ATTCTTAGTTAAATTTGTTTT
563 GTTTTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATTTCTTTT
* *
21631156 AGCTCTACTAACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCTAATGCATGGTTGTTTT
628 AGCTCTACTAACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGTTTT
* * *
21631221 CTAACAACTTTTGATCTGCCGAATCATGTTAGCACAGGGGATTCGCCCTTGATTAGCAGTGAGGC
693 CTAACAACTTTTGATCAGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGTGAGGC
21631286 GCTAGTATCTGTTAGATCTAGCAAGGTGAGTG
758 GCTAGTATCTGTTAGATCTAGCAAGGTGAGTG
21631318 TTTGTGGTTT
Statistics
Matches: 1557, Mismatches: 75, Indels: 66
0.92 0.04 0.04
Matches are distributed among these distances:
853 81 0.05
854 405 0.26
855 322 0.21
856 1 0.00
864 2 0.00
866 5 0.00
867 2 0.00
870 1 0.00
871 1 0.00
872 5 0.00
873 162 0.10
877 352 0.23
878 6 0.00
879 212 0.14
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.38
Consensus pattern (854 bp):
TTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGGGGATG
GTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTATGCAA
ATGGGATTATATTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTTGTTGG
AGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATAATGAAGGAGAGGGGGTGGAGATTTTC
AAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATATCCGAAGTGCCGGAGTGGTTTTC
TTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCTTGAAACTTCCTACTCATCTCTTC
TTTAATCATTTTCTACTATAGTCGACCCTCTCTTTTACTTTCATCTCTACTTCTTTTCCAATTCC
GTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTCTCTCCCTCTCAAATCTCTTTGTTCTTCT
TGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAATACGTTTTTTTTATGGTAAGGGGGTG
TTACAACCATTTTATTATTTCATTCTTAGTTAAATTTCTTTTAGCTCTACTAACAAGCTTCGGTT
TTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGTTTTCTAACAACTTTTGATCAGCCGAA
TCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGTGAGGCGCTAGTATCTGTTAGATCTAGCA
AGGTGAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCT
TAAGGGAAC
Found at i:21630774 original size:854 final size:860
Alignment explanation
Indices: 21626993--21631317 Score: 6418
Period size: 877 Copynumber: 5.0 Consensus size: 860
21626983 GCGTATTTGG
* *
21626993 GAGTGCTTGAGAAGCTTGGGCTCAAGTCTTGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
1 GAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
* *
21627058 GAAACTTGGATGATAGCTTACAGGATTTATAAGTATTTGTAGTTGTTTTATGACACAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGG
* * * * * * *
21627123 GGATGGTCTAGCGGCAAGGTGGCATGGTGTTTCTAGTAGGGGACTAGAGTTCGAGTCTCACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTA
* * *
21627188 TGCAAATGGGATTATATTTTTTGTTTCATGAGGAGGAAAGAGTTGGTGTTTGATTTGAACTCTAT
196 TGCAAATGGGATTATATTTTTT-TTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGT
*
21627253 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATAGCAAGGAGAGG----GG---
260 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGA-AGGATAAGGACA
* **
21627311 GTG-GAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATATCCGAAGTGC
324 GAGAGAGAGATTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATATCCGAAGTGC
* * *
21627375 CGAAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTGGGTCTTCTCTGCTTGAAATTTCC
389 CGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCTTGAAACTTCC
* *
21627440 TACTCATCTCTTCTTTAATCATTTTCTGCTATAGCCGACCCTCTCTTTTACTTTCATCTCTACTT
454 TACTCATCTCTTCTTTAATCATTTTCTACTATAGTCGACCCTCTCTTTTACTTTCATCTCTACTT
** * *
21627505 CTTTTCCAATTCTATTATTCCTTTCTCTGTTAGGTCGAATTCTCATACACTCTCCCTCTCAAATC
519 CTTTTCCAATTCCGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTCTCTCCCTCTCAAATC
* * *
21627570 TCTTTGTTCTTCTTATTTCTGGACGAATCTTCCTGACTGACTATTACTGAAATACGTTTGTTTTT
584 TCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAATACGTTT-TTTTT
* * *
21627635 ATGGTAAGGGGGTGTTACAACCATTCTATTATTTCGTTTTTAGTTAAATTTCTTTTAGCTCTACT
648 ATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATTTCTTTTAGCTCTACT
* * *
21627700 AACAAGCTTCGATTTTCCCTTTTCTTTCCCTTGGGGGCCGAATGTATGGTTGTTTTCTAATAACT
713 AACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGTTTTCTAACAACT
* * * ** *
21627765 TTTAATCA-ACCGAATCATGTTAGCACGAGGGATTCATCCTTGATCAGCAGTGAGGCGCTATTAT
778 TTTGAT-ATGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGTGAGGCGCTAGTAT
* *
21627829 CTGTTAGATCTACCAATGT
842 CTGTTAGATCTAGCAAGGT
* * *
21627848 GAGTACTTGAGAAGCTTGGGCTCAAGTCTTGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
1 GAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
* *
21627913 GGAACTTGGATGATAGCTTACAGGATTTATAATTATTTGTGGTTGTTTTATGACATAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGG
* * * * *
21627978 GGATGGTCTAGTGGCAAGGTGGCATGTTGTTTCTGGTAGGGGACTGGAGTTGGAGTCTCACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTA
*
21628043 TGCAAATGGGATTATATTTTTTTTTCATGAGGAGGCAAGAGTTGTTGTTGGATTTGAACTCTGTT
196 TGCAAATGGGATTATATTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
*
21628108 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGACAAGGGGAGA
261 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAA---G-G-
* * * *
21628173 AAATCAATGAGAGGGGGTGGAGATTTTCAAAGATTTTGAAAGCTTGAAAAGTTGTGCCAAAATAG
321 --A-C-A-GAGA----G-AGAGA--TTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
* *
21628238 GTATATCCGAAGTGCCAGAGTGGTTTTCTTGG-TTGCACTTTTGTCTGTTGCCGTTTGGTCTTCT
374 GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
* *
21628302 CTGCTTGAAACTTCCTACTCTTCTCTTCTTTAATCATTTTCTGCTATAG-CTGACCCTCTCTTTT
439 CTGCTTGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTACTATAGTC-GACCCTCTCTTTT
* * * *
21628366 ACTTTCATCTCTAGTTCTTTTCCAATTCCGTTATTCCTTTCTCTGTTAGGCCGAACTCTCATACT
503 ACTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACT
21628431 CTCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTG
568 CTCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTG
* *
21628496 AAATACATTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAACT
633 AAATACGTTT-TTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAAT
* * * **
21628561 TTATTTTTA-CTCTAGTAACAAGCGTCTATTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATG
697 TT-CTTTTAGCTCTACTAACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATG
* * * *
21628625 GTTGTTTTCTAACAACTTTTGATATGCCGAATCATGTTACCACGGGGGATTTGCTCTTGATCAGT
761 GTTGTTTTCTAACAACTTTTGATATGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGC
* * *
21628690 AGTGAGGAGCTAGTATCTTTTAGATCTAGTAAGGT
826 AGTGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
* * *
21628725 GAGTGCTGGAGAAGCTTGGGCTCAAGTCTGGGCTTTCGCAAAATTTTAA---------T-TT---
1 GAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
21628777 -----TTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGG
21628837 GGATGGTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTA
21628902 TGCAAATGGGATTATATTTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGT
196 TGCAAATGGGATTATA-TTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGT
* *
21628967 TGTTGGAGATTTTGAATTGGTCTTGTGAGTTGGTTGGGGAGGATATCAAGGAAGGATAAAGGGAG
260 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGAT-AA--G-G
*
21629032 AAAATCAAGGAGAGGGGGTAGAGATTTTCAAGGATTTTGAAAGCTTGAAAAGTTGTGCCGAAATA
321 ---A-C-A-GAGA----G-AGAGA--TTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATA
* * *
21629097 GGTATATCCGAAGTGTCGGAGTGGTTTTCTTGGCTTGCACTTTTATATGTTGCCATTTGGTCTTC
373 GGTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTC
* *
21629162 TCTACTTGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTCCTATAG-CAGACCCTCTCTTT
438 TCTGCTTGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTACTATAGTC-GACCCTCTCTTT
**
21629226 TACTTTCATCTCTACTTCTTTTCCAATTATGTTATTCCTTTCTCTATTAGGTCGAATTCTCATAC
502 TACTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTATTAGGTCGAATTCTCATAC
* *
21629291 TCTCTCCCTCTTAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATATTCCTGACTGACTATTACT
567 TCTCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACT
21629356 GAAATACGTTTGTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAA
632 GAAATACGTTT-TTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAA
* *
21629421 TTTCTTTTAGCTCTACTAACAAGCTTCGGCTTTCCCTTTTCTTTCTCTTGGGGGTCGAATGTATG
696 TTTCTTTTAGCTCTACTAACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATG
21629486 GTTGTTTTCTAACAACTTTTGATCA-GCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAG
761 GTTGTTTTCTAACAACTTTTGAT-ATGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAG
*
21629550 CAGTGAGGAGCTAGTATCTGTTAGATCTAGCAAGGT
825 CAGTGAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
* *
21629586 GAGTGCTTGAGAAGCTTGGGCTCAAGTCTTGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
1 GAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
21629651 GGAACTTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGG
*
21629716 GGATGGTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCAAGTCTAACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTA
* * * *
21629781 TGCAAATGGGATTATATTTTTTGTTTCAAGAGGAGGCAAGAGCTGGAGTTGGATTTGAACTCTAT
196 TGCAAATGGGATTATATTTTTT-TTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGT
*
21629846 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATGAAGGAGAGG----GG---
260 TGTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGA-AGGATAAGGACA
* **
21629904 GTG-GAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATATCCGAAGTGC
324 GAGAGAGAGATTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATATCCGAAGTGC
21629968 CGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCTTGAAACTTCC
389 CGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCTTGAAACTTCC
*
21630033 TACTCATCTCTTCTTTAATCATTTTCTACTATAGTCGACCCTATCTTTTACTTTCATCTCTACTT
454 TACTCATCTCTTCTTTAATCATTTTCTACTATAGTCGACCCTCTCTTTTACTTTCATCTCTACTT
*
21630098 CTTTTCCAATTCCGTTATTCCTTTCTCTGTTAGGTCGAATTCTCATACTCTCTCCCTCTCAAATC
519 CTTTTCCAATTCCGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTCTCTCCCTCTCAAATC
*
21630163 TCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAATACATTTTTTTTA
584 TCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAATACGTTTTTTTTA
** * *
21630228 TGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTATCTTTATTTTTA-CTCTAGT
649 TGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATTT-CTTTTAGCTCTACT
** *
21630292 AACAAGCTTCTTTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGTTTTCTATCAACT
713 AACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGTTTTCTAACAACT
* *
21630357 TTTGATATGACGAATCATGTTAGCAGGGGGGATTCGCCCTTGATCAGCAGTGAGGCGCTAGTATC
778 TTTGATATGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGTGAGGCGCTAGTATC
*
21630422 TGTTAGATCTGGCAAGGT
843 TGTTAGATCTAGCAAGGT
21630440 GAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
1 GAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
* *
21630505 GGAACTTGGATGATAGCTTGCAGGATTTATAATTATTTGTGGTTGTTTTATGACACAAAGAGAGG
66 GGAACTTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGG
* * * *
21630570 GGATGGTCTAGTGGCAAGGTGGCATGTTGTTTCTGGTAGGGGACTGGAGTTCGAGTCTCACTGTA
131 GGATGGTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTA
21630635 TGCAAATGGGATTATATTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
196 TGCAAATGGGATTATATTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
21630700 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGCGAGA
261 GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAA---G-G-
*
21630765 AAATCAAGGAGAGGGGGTGGAGATTTTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
321 --A-C-A-GAGA----G-AGAGA--TTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAG
* * *
21630830 GTATATCCGTAGTGCCGGAGTGGTTTTATTGGCTTACACTTTTGTATGTTGCCGTTTGGTCTTCT
374 GTATATCCGAAGTGCCGGAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCT
* *
21630895 CTGCTTGAAACTTCTTACTCATCTCTTCTTTAATCATTTTCTGCTATAGTCGACCCTCTCTTTTA
439 CTGCTTGAAACTTCCTACTCATCTCTTCTTTAATCATTTTCTACTATAGTCGACCCTCTCTTTTA
* *
21630960 CTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTCTTAAGTCGAATTCTCATACTC
504 CTTTCATCTCTACTTCTTTTCCAATTCCGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTC
* * *
21631025 TCTCCCTCTCAAATCTCTTTGTTTTTCTTGTTCCAGGCCAAATCTTCCTGACTGACTATTACTGA
569 TCTCCCTCTCAAATCTCTTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGA
*
21631090 AATACGTTTTTTTTATGGTAAGGAGGTGTTACAACCATTTTATTA----ATTCTTAGTTAAATTT
634 AATACGTTTTTTTTATGGTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATTT
* * *
21631151 GTTTTAGCTCTACTAACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCTAATGCATGGTT
699 CTTTTAGCTCTACTAACAAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTT
* * *
21631216 GTTTTCTAACAACTTTTGATCTGCCGAATCATGTTAGCACAGGGGATTCGCCCTTGATTAGCAGT
764 GTTTTCTAACAACTTTTGATATGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGT
21631281 GAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
829 GAGGCGCTAGTATCTGTTAGATCTAGCAAGGT
21631313 GAGTG
1 GAGTG
21631318 TTTGTGGTTT
Statistics
Matches: 3188, Mismatches: 200, Indels: 146
0.90 0.06 0.04
Matches are distributed among these distances:
852 3 0.00
853 93 0.03
854 494 0.15
855 506 0.16
856 1 0.00
857 3 0.00
858 1 0.00
859 135 0.04
860 205 0.06
861 466 0.15
862 1 0.00
863 2 0.00
867 2 0.00
868 1 0.00
869 2 0.00
870 3 0.00
871 2 0.00
872 6 0.00
873 163 0.05
874 1 0.00
875 3 0.00
876 4 0.00
877 783 0.25
878 78 0.02
879 227 0.07
880 3 0.00
ACGTcount: A:0.22, C:0.16, G:0.23, T:0.38
Consensus pattern (860 bp):
GAGTGCTTGAAAAGCTTGGGCTCAAGTCTGGGCTTTGGCAAAATTTTAATTTTTGGGCTCTTAAG
GGAACTTGGATGATAGCTTACAGGATTTATAAGTATTTGTGGTTGTTTTATGACACAAAGAGAGG
GGATGGTCTAGTGGCAAGGTGGCATGCTGTGTCTGGTATGGGACTGGAGTTCGAGTCTAACTGTA
TGCAAATGGGATTATATTTTTTTTTCATGAGGAGGCAAGAGTTGGTGTTGGATTTGAACTCTGTT
GTTGGAGAGTTTGAATTGGTCTTGTGAGTTGGTTGTGGAGGATATCAAGGAAGGATAAGGACAGA
GAGAGAGATTCAAGGATTTTGAAGGCTTGAAAAGTTGTGCCGAAATAGGTATATCCGAAGTGCCG
GAGTGGTTTTCTTGGCTTGCACTTTTGTATGTTGCCGTTTGGTCTTCTCTGCTTGAAACTTCCTA
CTCATCTCTTCTTTAATCATTTTCTACTATAGTCGACCCTCTCTTTTACTTTCATCTCTACTTCT
TTTCCAATTCCGTTATTCCTTTCTCTATTAGGTCGAATTCTCATACTCTCTCCCTCTCAAATCTC
TTTGTTCTTCTTGTTTCAGGCCGAATCTTCCTGACTGACTATTACTGAAATACGTTTTTTTTATG
GTAAGGGGGTGTTACAACCATTTTATTATTTCATTCTTAGTTAAATTTCTTTTAGCTCTACTAAC
AAGCTTCGGTTTTCCCTTTTCTTTCTCTTGGGGGCCGAATGTATGGTTGTTTTCTAACAACTTTT
GATATGCCGAATCATGTTAGCACGGGGGATTCGCCCTTGATCAGCAGTGAGGCGCTAGTATCTGT
TAGATCTAGCAAGGT
Found at i:21632402 original size:27 final size:27
Alignment explanation
Indices: 21632050--21632404 Score: 277
Period size: 27 Copynumber: 13.2 Consensus size: 27
21632040 CCAAATATTT
* * *
21632050 GTAAAATGACCGTAATACCCATGTAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
21632077 GTAAAATGACCG-AAAAACCCTATAAG
1 GTAAAATGACCGTAATACCCCTATAGG
*
21632103 GTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
21632130 GTAAAATGACCATAATACCTCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
*** * *
21632157 GTAAAATGACTAAAAAACTGCC-ATAGG
1 GTAAAATGACCGTAATAC-CCCTATAGG
* * * * *
21632184 TTAAAGTGATCGTAATGCCCCCATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
** * *
21632211 GTAAAATGACCGTAATGTCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTATAGG
**
21632238 GTAAAATGATTGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
21632265 GTAAAATGACCGAAAAACTCCC-ATACG
1 GTAAAATGACCGTAATAC-CCCTATAGG
* * * * *
21632292 GTAAAATGACCATAATGCCCTTGTAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
21632319 GTAAAATGATCGTAATA-CCTTCATAGG
1 GTAAAATGACCGTAATACCCCT-ATAGG
* * * * *
21632346 GTTAAATGACCGAAATATCTCTATAAG
1 GTAAAATGACCGTAATACCCCTATAGG
*
21632373 GTAAAATGACCGTAATACCCCTAGAGG
1 GTAAAATGACCGTAATACCCCTATAGG
21632400 GTAAA
1 GTAAA
21632405 TGAATATTTT
Statistics
Matches: 252, Mismatches: 69, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
26 30 0.12
27 216 0.86
28 6 0.02
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:21632404 original size:81 final size:81
Alignment explanation
Indices: 21632050--21632394 Score: 329
Period size: 81 Copynumber: 4.3 Consensus size: 81
21632040 CCAAATATTT
* * * * *
21632050 GTAAAATGACCGTAATACCCATGTAAGGTAAAATGACCGAAAAACC-CTATAAGGTAAAATGACC
1 GTAAAATGACCGTAATACCCCTGTAAGGTAAAATGATCGTAAAACCTCCATAGGGTAAAATGACC
* * *
21632114 GTAATGCCCCTATAGG
66 GAAATACCCCCATAGG
* * * * * *
21632130 GTAAAATGACCATAATACCTCTGTAGGGTAAAATGA-C-TAAAAAACTGCCATAGGTTAAAGTGA
1 GTAAAATGACCGTAATACCCCTGTAAGGTAAAATGATCGT-AAAACCT-CCATAGGGTAAAATGA
* * *
21632193 TCGTAATGCCCCCATAGG
64 CCGAAATACCCCCATAGG
** * *
21632211 GTAAAATGACCGTAATGTCCCTGTAAGGTAAAATGATTGTAATACC-CCTATAGGGTAAAATGAC
1 GTAAAATGACCGTAATACCCCTGTAAGGTAAAATGATCGTAAAACCTCC-ATAGGGTAAAATGAC
* * *
21632275 CGAAAAACTCCCATACG
65 CGAAATACCCCCATAGG
* * * * * *
21632292 GTAAAATGACCATAATGCCCTTGTAAGGTAAAATGATCGTAATACCTTCATAGGGTTAAATGACC
1 GTAAAATGACCGTAATACCCCTGTAAGGTAAAATGATCGTAAAACCTCCATAGGGTAAAATGACC
* * * *
21632357 GAAATATCTCTATAAG
66 GAAATACCCCCATAGG
21632373 GTAAAATGACCGTAATACCCCT
1 GTAAAATGACCGTAATACCCCT
21632395 AGAGGGTAAA
Statistics
Matches: 215, Mismatches: 43, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
79 6 0.03
80 34 0.16
81 169 0.79
82 5 0.02
83 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (81 bp):
GTAAAATGACCGTAATACCCCTGTAAGGTAAAATGATCGTAAAACCTCCATAGGGTAAAATGACC
GAAATACCCCCATAGG
Found at i:21632456 original size:24 final size:24
Alignment explanation
Indices: 21632425--21632535 Score: 109
Period size: 24 Copynumber: 4.6 Consensus size: 24
21632415 TCCCCTCGAG
21632425 TGTAAATGATTGATTTGTCTGTGA
1 TGTAAATGATTGATTTGTCTGTGA
* * *
21632449 TGTAAATGACTAATTTGTTTGTGA
1 TGTAAATGATTGATTTGTCTGTGA
* * *
21632473 TTTAAATGACTGATTTGTTTGTGA
1 TGTAAATGATTGATTTGTCTGTGA
21632497 TTGGT--ATGATTGATTTGTCTGTGA
1 -T-GTAAATGATTGATTTGTCTGTGA
* **
21632521 TTTGTATGATTGATT
1 TGTAAATGATTGATT
21632536 CTGAGCATGG
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 70 0.95
25 1 0.01
26 1 0.01
ACGTcount: A:0.23, C:0.04, G:0.23, T:0.50
Consensus pattern (24 bp):
TGTAAATGATTGATTTGTCTGTGA
Found at i:21632535 original size:48 final size:47
Alignment explanation
Indices: 21632427--21632535 Score: 121
Period size: 48 Copynumber: 2.3 Consensus size: 47
21632417 CCCTCGAGTG
*
21632427 TAAATGATTGATTTGTCTGTGATGTAAATGACTAATTTGTTTGTGATT
1 TAAATGATTGATTTGTCTGTGATGT-AATGACTAATTTGTCTGTGATT
* * * *
21632475 TAAATGACTGATTTGTTTGTGATTGGT-ATGATTGATTTGTCTGTGATT
1 TAAATGATTGATTTGTCTGTGA-T-GTAATGACTAATTTGTCTGTGATT
**
21632523 TGTATGATTGATT
1 TAAATGATTGATT
21632536 CTGAGCATGG
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
48 48 0.94
49 1 0.02
50 2 0.04
ACGTcount: A:0.24, C:0.04, G:0.23, T:0.50
Consensus pattern (47 bp):
TAAATGATTGATTTGTCTGTGATGTAATGACTAATTTGTCTGTGATT
Found at i:21632753 original size:32 final size:32
Alignment explanation
Indices: 21632707--21632863 Score: 190
Period size: 32 Copynumber: 4.9 Consensus size: 32
21632697 GCTACGATGC
* *
21632707 TACTAATGGCTTTGTGCCAATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCAT
*
21632739 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCAT
* *
21632771 TACTGATGACTTTGTGCTGATCATATTACCAT
1 TACTGATGGCTTTGTGCCGATCATATTACCAT
* * ** * *
21632803 TATTGATGG-TTGTGTGCCGGTCATACCACTAC
1 TACTGATGGCTT-TGTGCCGATCATATTACCAT
*
21632835 TACTGATGGCTTTGTGCCAATCATATTAC
1 TACTGATGGCTTTGTGCCGATCATATTAC
21632864 TGTACTTATG
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
31 2 0.02
32 100 0.96
33 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCAT
Found at i:21632894 original size:22 final size:21
Alignment explanation
Indices: 21632869--21632933 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
21632859 ATTACTGTAC
21632869 TTATGGTTTGTAGCCATTCTGT
1 TTATGGTTT-TAGCCATTCTGT
* * *
21632891 TTATAGCTTATAGCTATTCTGT
1 TTAT-GGTTTTAGCCATTCTGT
* *
21632913 TTACGGCTCTTAGCCATTCTG
1 TTATGG-TTTTAGCCATTCTG
21632934 GTTACTGGCA
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 1 0.03
22 29 0.88
23 3 0.09
ACGTcount: A:0.17, C:0.18, G:0.18, T:0.46
Consensus pattern (21 bp):
TTATGGTTTTAGCCATTCTGT
Found at i:21632938 original size:22 final size:22
Alignment explanation
Indices: 21632879--21632938 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
21632869 TTATGGTTTG
*
21632879 TAGCCATTCTGTTTATAGCTTA
1 TAGCCATTCTGTTTACAGCTTA
* *
21632901 TAGCTATTCTGTTTACGGCTCT-
1 TAGCCATTCTGTTTACAGCT-TA
*
21632923 TAGCCATTCTGGTTAC
1 TAGCCATTCTGTTTAC
21632939 TGGCAGCTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.43
Consensus pattern (22 bp):
TAGCCATTCTGTTTACAGCTTA
Found at i:21633769 original size:16 final size:17
Alignment explanation
Indices: 21633737--21633769 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
21633727 TTTCAAGAAG
21633737 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
21633755 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
21633770 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:21640651 original size:26 final size:27
Alignment explanation
Indices: 21640621--21640798 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
21640611 TCGATATCTG
* * *
21640621 GACCGAAATACCCCCGTAGGGTAGAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
* * *
21640648 -ACCGAAATACCCCAGCAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
*
21640674 GACCGTAATGCCCCTGTAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
*
21640701 GACCGTAATGCCCCTGTAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
*
21640728 GACCGTAATACCCCTATAGGGTAAAAT
1 GACCGTAATACCCCTGTAGGGTAAAAT
* * * * * * *
21640755 AATCGTAATATCCTTGTAAGATAAAAG
1 GACCGTAATACCCCTGTAGGGTAAAAT
*
21640782 GACCGTAATGCCCCTGT
1 GACCGTAATACCCCTGT
21640799 CGTGACATGA
Statistics
Matches: 128, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
26 23 0.18
27 105 0.82
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (27 bp):
GACCGTAATACCCCTGTAGGGTAAAAT
Found at i:21644488 original size:50 final size:50
Alignment explanation
Indices: 21644421--21644797 Score: 455
Period size: 50 Copynumber: 7.5 Consensus size: 50
21644411 ACTGCCAATG
* * * ** *
21644421 CCATATCCCAGATATGGTCTTACACGGGAGTTCTCATATCGGTGCTCATA-
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC-CATAC
* *
21644471 CCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCAGTGCCA-ATG
1 CCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGGTGCCATA-C
* *
21644521 CCATGTCCCAAACATAGTCTTACATGGGACCTCTCATCTCGGTGCC-TAC
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATAC
*
21644570 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCA-AC
1 -CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATAC
* * * *
21644620 GCCATGTCCCAAACATGGTCTTACATGAGACTTCTCATCTCGGTGCCA-ATG
1 -CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATA-C
* * *
21644671 CCATGTCCCAAACATGGTCTTACATGGGACCTTTCATCACGGTGCCA-AC
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATAC
*
21644720 GCCATGTCCCAGACATTGTCTTACATGGGACCTCTCATCTCGGTGCCA-AC
1 -CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATAC
21644770 GCCATGTCCCAGACATGGTCTTACATGG
1 -CCATGTCCCAGACATGGTCTTACATGG
21644798 CTCACATATT
Statistics
Matches: 292, Mismatches: 26, Indels: 18
0.87 0.08 0.05
Matches are distributed among these distances:
48 1 0.00
49 3 0.01
50 287 0.98
51 1 0.00
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCATAC
Found at i:21644544 original size:100 final size:100
Alignment explanation
Indices: 21644372--21644797 Score: 506
Period size: 100 Copynumber: 4.3 Consensus size: 100
21644362 CATGCCAAAG
* * ** * * * * * *
21644372 CCATGTCCCAGACATGGTCTTACGTGGGA--TGTTTTCTGTACTGCCAATGCCATATCCCAGATA
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CAGTGCCAACGCCATGTCCCAAACA
* ** *
21644435 TGGTCTTACACGGGAGTTCTCATATCGGTGCTCATA-
65 TGGTCTTACATGGGACCTCTCATCTCGGTGC-CATAC
*
21644471 CCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCAGTGCCAATGCCATGTCCCAAACA
1 CCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACA
*
21644535 TAGTCTTACATGGGACCTCTCATCTCGGTGCC-TAC
65 TGGTCTTACATGGGACCTCTCATCTCGGTGCCATAC
* *
21644570 GCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACA
1 -CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACA
* * *
21644635 TGGTCTTACATGAGACTTCTCATCTCGGTGCCA-ATG
65 TGGTCTTACATGGGACCTCTCATCTCGGTGCCATA-C
* * * * *
21644671 CCATGTCCCAAACATGGTCTTACATGGGACCTTTCATCACGGTGCCAACGCCATGTCCCAGACAT
1 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACAT
*
21644736 TGTCTTACATGGGACCTCTCATCTCGGTGCCA-AC
66 GGTCTTACATGGGACCTCTCATCTCGGTGCCATAC
21644770 GCCATGTCCCAGACATGGTCTTACATGG
1 -CCATGTCCCAGACATGGTCTTACATGG
21644798 CTCACATATT
Statistics
Matches: 287, Mismatches: 31, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
98 2 0.01
99 29 0.10
100 251 0.87
101 5 0.02
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (100 bp):
CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACAT
GGTCTTACATGGGACCTCTCATCTCGGTGCCATAC
Found at i:21644606 original size:150 final size:149
Alignment explanation
Indices: 21644413--21644796 Score: 556
Period size: 150 Copynumber: 2.6 Consensus size: 149
21644403 TTTTCTGTAC
* * * * ** *
21644413 TGCCAATGCCATATCCCAGATATGGTCTTACACGGGAGTTCTCATATCGGTGCTCATA-CCATGT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGC-CA-ACCCATGT
*
21644477 CCCAGACATGGTCTTACGA-GGGACCTCTCATCTCAGTGCCAATGCCATGTCCCAAACATAGTCT
64 CCCAGACATGGTCTTAC-ATGAGACCTCTCATCTCAGTGCCAATGCCATGTCCCAAACATAGTCT
*
21644541 TACATGGGACCTCTCATCTCGG
128 TACATGGGACCTCTCATCACGG
* *
21644563 TGCCTACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC-CCATGTC
* * * *
21644628 CCAAACATGGTCTTACATGAGACTTCTCATCTCGGTGCCAATGCCATGTCCCAAACATGGTCTTA
65 CCAGACATGGTCTTACATGAGACCTCTCATCTCAGTGCCAATGCCATGTCCCAAACATAGTCTTA
*
21644693 CATGGGACCTTTCATCACGG
130 CATGGGACCTCTCATCACGG
*
21644713 TGCCAACGCCATGTCCCAGACATTGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC-CCATGTC
21644778 CCAGACATGGTCTTACATG
65 CCAGACATGGTCTTACATG
21644797 GCTCACATAT
Statistics
Matches: 211, Mismatches: 20, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
148 1 0.00
149 3 0.01
150 207 0.98
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.26
Consensus pattern (149 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACCCATGTCC
CAGACATGGTCTTACATGAGACCTCTCATCTCAGTGCCAATGCCATGTCCCAAACATAGTCTTAC
ATGGGACCTCTCATCACGG
Found at i:21659860 original size:86 final size:86
Alignment explanation
Indices: 21659715--21659884 Score: 279
Period size: 86 Copynumber: 2.0 Consensus size: 86
21659705 GAGGGAGTGT
*
21659715 TGTGCAGGAAGTGGACTCTAGCACTCAAGAATTTCAGCTAGAGTGATATTCCTCATTTGGTATGC
1 TGTGCAGGAAGTGGACTCTAGCACTCAAGAATTTCAGCTAGAGTGATACTCCTCATTTGGTATGC
*
21659780 CTCATTCCAGGTTTTTTTTTC
66 CTCATTCCAGGTCTTTTTTTC
* * *
21659801 TGTGCAGGAAGTGGACTCT-GTCATTCAAGAATTTCGGCTAGAGTGGTACTCCTCATTTGGTATG
1 TGTGCAGGAAGTGGACTCTAG-CACTCAAGAATTTCAGCTAGAGTGATACTCCTCATTTGGTATG
21659865 CCTCATTCCAGGTCTTTTTT
65 CCTCATTCCAGGTCTTTTTT
21659885 CTTTCTTCTT
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
85 1 0.01
86 77 0.99
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (86 bp):
TGTGCAGGAAGTGGACTCTAGCACTCAAGAATTTCAGCTAGAGTGATACTCCTCATTTGGTATGC
CTCATTCCAGGTCTTTTTTTC
Found at i:21661085 original size:24 final size:26
Alignment explanation
Indices: 21661057--21661109 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 26
21661047 ATACCCCCAA
21661057 ACTGATATGAAATGACTATTATGCCCTG
1 ACTGATA--AAATGACTATTATGCCCTG
*
21661085 ACGTGGTAAAATGACTATTATGCCC
1 AC-TGATAAAATGACTATTATGCCC
21661110 CTATGTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 17 0.74
28 2 0.09
29 4 0.17
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (26 bp):
ACTGATAAAATGACTATTATGCCCTG
Found at i:21665184 original size:662 final size:660
Alignment explanation
Indices: 21663433--21670725 Score: 9915
Period size: 662 Copynumber: 11.0 Consensus size: 660
21663423 ATTTCACAAA
* * *
21663433 AAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCAAATAGATCCATTTTGAGTTAGAAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATAG-TCCATTTTGAGTTAGGAC
* * *
21663498 ATCCATTGA-TTGTTGGATTTCCTCTCAAAATTCAAGATCAACCATTAAAGCCCCTTATGCTTTT
65 ATCCATTGATTTG-TGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTT
* * * *
21663562 AAAGAATAAGACATTGAAAAAAT-ATCATGTAACTGACTCTCAAATCATGTAAAAATATTTCTAA
129 GAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
* * ** * * *
21663626 TCATCATCAAAATAAGTTTAGAAATGCTAATTACCTTTCATTTGTTCTAATTCCTTTGATTGATA
194 TCATCATAAAAACAAGTTTAG-AATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAA
* *
21663691 ATATTGATTCAAAAATCTTGAGAAATTTCAGAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
258 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
** * * * **
21663756 TAATTCGGGTTATCCTGGTTCTCTTCAAGACTCGAAGCTTCAACAAAATTAAAGTAG-CATTACC
323 TAATTCTAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTACC
* *
21663820 ACCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAT
388 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAA-
* * * * *
21663885 CG--AC--AACTC-GA-TTGTAACATCAAGTCGACAACTCGATTCCTAACAAAATCGACCTCTCC
452 AGATACTTTAC-CAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * * * *
21663944 AGCCCTCTTAATCACTTCCAAACATAAATAATAAACCAATTACACATGAATTAAGTATAAATTTC
516 AGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTC
* * * * *
21664009 ACATTTAAATCAATTGCACAAAAAT-TCGAAAAGTTGGTTCATGAAGATGTTGAAATTCAAATTT
581 ATATTTAAATCAATTTCACAAAAATCT-GGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTT
*
21664073 CTTCAAATTACCACAC
645 CTTCAAATTACCTCAC
* * * * *
21664089 AAGTCATGTCTAATCTTGGTAAATAAGACTTAAAACCTTCTAATAGATCAATTTTGAGTTAGAAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATAG-TCCATTTTGAGTTAGGAC
** * * *
21664154 ATCCATTGATTTGTGGATTTGGTCTCAAAATTTAAGATCCACCAATAAGGCACCTTAAGCTTTTG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTG
*
21664219 AAGAATATGACAATGGA-AAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
130 AAGAATATGAC-ATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
21664282 TCATCATAAAAACAAGTTTAGAACTAA-AACTTACCTTTGATTCGTTCTAA------T--TT-AA
194 TCATCATAAAAACAAGTTTAGAA-TAATAA-TTACCTTTGATTCGTTCTAATTCCTTTGATTGAA
*
21664337 AATATTAATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
257 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
* * * * * *
21664402 CTAATTCTGGTTATCCCGGTCCTCTTCAA-ATCTTGAAGCTTTAACAGAGGTAAGGCAGACATTT
322 CTAATTCTAGTTATCCTGGTCCTCTTCAAGA-CTCGAAGCTTTAACAGAGGTAAAGTAGACATTA
*
21664466 CCACCTTTCAAATGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
386 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* ** * *
21664531 AAGACACTTTACCAGATTTGTAACATCAAGTCGAAAACTCAATTCCTCAGAAAATCAACCTCTCC
451 AAGATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCC
* * *
21664596 -GACCCTCCTAATGACTTCCAAACATCAATACTAAACTAATTGCACATAAACTAAGTATAAATTT
516 AG-CCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTT
* * * * * *
21664660 CACATTTAAATCAATTTCACAACAATCTGGAAAGCCAGTTCATGAAGATGTTAAAATTTGAATTT
580 CATATTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTT
* *
21664725 ATTCAAATTACCTAAC
645 CTTCAAATTACCTCAC
* * * * * *
21664741 AAATCAAGTTTAATCTTGGAAAATATGACTAAAAACATTCTAATATGTCGATTTTAAGTTAGGAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATA-GTCCATTTTGAGTTAGGAC
* * * *
21664806 ATCCATTAATTTGTGAATTTCCTCTCAAAATTCAAGATCCACCTTTAAAACACCTTAAGCTTTTG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTG
* *
21664871 AAGAATATGACATTGATAAAATAATGATGTGATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
21664936 CATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
195 CATCATAAAAACAAGTTTAGAA-TAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
*
21665001 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTTT
259 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * * * *
21665066 AATTCTAGTTATCCTGGTCCTCTTTAATACACGAAGCTTCAACAGAGGTAAAGTAAACATTACCA
324 AATTCTAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTACCA
* *
21665131 CCTTTCAAATGCTATATTAAACAGAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
389 CCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
* * *
21665196 ATACTTTACCAGATTTGTAACATCAAGTTGAAAACTTGATTCCACACAAAATTGACCTCTCCAGC
454 ATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGC
* * * ** *
21665261 ACTCCTAATGACTTCCAAACATCAATAATAAACCAATTATGCATAAATTAAGTATAAATTTCATA
519 CCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATA
* * * * * *
21665326 TCTAAATCAATTTCACAACAATTTGGAAAGTCAGCTCATGAAGATGTTGAAATTCAAATTTCTTC
584 TTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTCTTC
*
21665391 AAATTACCTCAG
649 AAATTACCTCAC
* * *
21665403 AAATCATGTTTAATCTTGGTATATAAGACTAAAAACCTTCTAATAGGTCGATTTGGAGTTAGGAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATA-GTCCATTTTGAGTTAGGAC
* *
21665468 ATCCATTGATTT-TCGGATTTCCTCTCAAAATTCAAGATCCACCCTTAGAGCACCTTAAGCTTTT
65 ATCCATTGATTTGT-GGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTT
** *
21665532 GAAGAATATGACATTGATAAAATAATCATGTGGTTAACTCTCAAATCATGTAAAAATATTTCTAA
129 GAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
* *
21665597 TCATCATAAAAACAAGTTCAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTAATTGAAA
194 TCATCATAAAAACAAGTTTAGAA-TAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAA
* *
21665662 ATATTGATTTAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACCTTTGAGAATAATTCGTTC
258 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
* *
21665727 TAATTCTGGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACC
323 TAATTCTAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTACC
* *
21665792 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATTGAAATTCACTTACAAA
388 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
* * *
21665857 GATACTTTA-CTGCATTTGTAACATCAAGTTGAAAACTTGATTCCTCACAAAATTGACCTCTCCA
453 GATACTTTACCAG-ATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCA
* * *
21665921 GCCCTCCTAATGACTTCCAAACATCAATAATAAACCAATTACACATAAATTAAGTATAAATTTCA
517 GCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCA
* * *
21665986 TATTCAAATCAATTTCACAATAATCTGGAAAGTCGGTTGATGAAGATGTTGAAATTCGAATTTCT
582 TATTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTCT
21666051 TCAAATTACCTCAC
647 TCAAATTACCTCAC
* * * *
21666065 AAATCATATTTAATCCTT-GTGAATAAGACTAAAAACCTTCTAATAGGTCCATTTTGAGTAAGGG
1 AAATCATGTTTAAT-CTTGGTAAATAAGACTAAAAACCTTCTAATA-GTCCATTTTGAGTTAGGA
* * *
21666129 CATTCATTGATTTGCGGATTTCCTCTCAAAATTCAAGA-CCTA-CACGTAAAGCACCTTAAGCTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCC-ACCA-TTAAAGCACCTTAAGCTT
* * * *
21666192 TTCAAGAATATGACATTGATAAAAGAATCAAGTGATTGACTCTCAAATCATGTAAAAATATTTCT
127 TTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCT
*
21666257 AATCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAACTCCTTTGATTGA
192 AATCATCATAAAAACAAGTTTAGAA-TAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGA
* *
21666322 AAATATTAATTCAAGAATCTTGAGAAATTTCAATATATTTTTGTCTACTTTTGAGAATAATTCGT
256 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
** *
21666387 TCTAATTCTAGTTATCCCAGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTA
321 TCTAATTCTAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTA
* * * *
21666452 CCACCTTTCAAAAGCTATATTAAACACAAATTATAATTAACAATACTAATCGAAATTCAGTCATA
386 CCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACA
* *
21666517 AGGATACTTTACTAGATTTGTAACATCAAGTC-AACAACTTGATTCCTCACAAAATCGACCTCTC
451 AAGATACTTTACCAGATTTGTAACATCAAGTCGAA-AACTTGATTCCTCACAAAATCGACCTCTC
** * *
21666581 CAAACCTCCTAATCACTTCCAAAAATCAATACTAAACAAATTACACATAAACTAAGTATAAATTT
515 CAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTT
* * * * *
21666646 CACATTTAAATTAATTTCACAAAAATCTGGAATGTCGGTTCATGAAGATGCTGAAATTCGAATTA
580 CATATTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTT
*
21666711 CTTCAAATTACCTAAC
645 CTTCAAATTACCTCAC
* * * *
21666727 AAAACATATTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTTAGAAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATAG-TCCATTTTGAGTTAGGAC
* *
21666792 ATCCATTGATTTGTGGATTTCCTCTCGAAATTCAAGATCCACCATTAAAGCAACTTAAGCTTTTG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTG
* *
21666857 AAGAATATGACATTGATAAAATAATTATGTAATTGACTCTCAAATCATGTAAAAATACTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* *
21666922 CATCATAAAAA-AATGTTTAGCAATAATAATTACCTTTGATTCGTACTGATTCCTTTGATTGAAA
195 CATCATAAAAACAA-GTTTAG-AATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAA
* * * *
21666986 ATATTGATTTAAGAATCTTGAGAAATTTCAAAATATTTTTGTTTACTTTTGAGAATAATTTGTTG
258 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
* ** * * *
21667051 TAATTCTGGTTATCCCAGTCCTCTTCAAGAATCGAAGCTTTGACAGAGGTAAAGTAGGCATTACC
323 TAATTCTAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTACC
* * * * *
21667116 ACCTTTCAAAAGCTATATTAAACAAAAACTATAATTAACTATACTAATCAAAATGCACTCACAAA
388 ACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
* * * * * *
21667181 GATACTTTACCAGATTTGTAACCTCAAGTCAAAAACTCGATTCCTCA-ATAAATCAACCACTCTA
453 GATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACA-AAATCGACCTCTCCA
* * * *
21667245 GCCCTCATAATCACTTCCAAACATCAATACTAAACTAATTACACATAAACAAAGTATAAATTTAA
517 GCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCA
* ** * *
21667310 TATTTAAATCAAGTTCACAAAAATCTTAAAAGTCGGTTCATGAAGATGTTAAAATTCAAATTTCT
582 TATTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTCT
*
21667375 TCGAATTACCTCAC
647 TCAAATTACCTCAC
* * *
21667389 AAATCAT-TCTTCATCTTGGTAAATAAGACTAAAAACCTTCTAGTAGGTCCATTATGAGTTAGGA
1 AAATCATGT-TTAATCTTGGTAAATAAGACTAAAAACCTTCTAATA-GTCCATTTTGAGTTAGGA
* * * * *
21667453 CATCTATTAATTTCTGGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAACACCTTAAGCTTTT
64 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTT
* * * *
21667518 GAAGAATATGACATTGATAAAATAATCATGTAATTAACTTTCAAATCTTATAAAAATATTTCTAA
129 GAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAA
* * * * ** * * * *
21667583 TCGTCA-AAGAAATAGGTTTAGAAATAATAATTACTTTTTTTTTTCATTCAAATTCCTTTAATTT
194 TCATCATAA-AAACAAGTTTAG-AATAATAATTAC--CTTTGATTCGTTCTAATTCCTTTGATTG
* *
21667647 AAAATATTGATTCAAGAATCTTGAGAAAGTTCAAAATATTTTTGTCTACTTTTGAGAACAATTCG
255 AAAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCG
* * * ** *
21667712 TTCTAATTCTTGTAAT-CTCGGTCCTCTTCAAGACTCAAAGCTTTAATTGAGGTAAAATAGACAT
320 TTCTAATTCTAGTTATCCT-GGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACAT
* *
21667776 TACCACCTTTCAAAAGTTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTTACTCA
384 TACCACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCA
* *
21667841 CAAAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCT
449 CAAAGATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCT
* * * *
21667906 CCAACCCTCCTAATGACTTCCAAACATCAATACTAAACCAATTACATATAAATTAAGTATAAATT
514 CCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATT
* *
21667971 TCATATTTAAATCAATTTCACAACAACCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATT
579 TCATATTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATT
*
21668036 TCTTCAAATAACCTCAC
644 TCTTCAAATTACCTCAC
* * * * **
21668053 AAATCATGTTTAATCCTCGTAAATAAGACTGAAAACCTTCTAACAGATCCATTTTGAGTTATCAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATAG-TCCATTTTGAGTTAGGAC
* * **
21668118 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACTATTAAAGCACCTTATGCTTTAA
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTG
* *
21668183 AAGAATATGACATGGAGAAAAT-ATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * * *
21668247 CATCATAAAAA-AAGTTTAGTAATAATAATTACCTTTGATTCATTCGAATTGCATTGATTGATAA
195 CATCATAAAAACAAGTTTAG-AATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
* * * * *
21668311 TATTAACTCAAGAATCTTGAGAAATTTTAGAATATTTTTGTCTACTTTTGAAAATAATTCGTTCT
259 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
** * * * *
21668376 AATTCTAGTTATCCCAGTCCACTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGATATTACCA
324 AATTCTAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTACCA
* * * **
21668441 CCTTTCCAAAGCTATATTAAACACAAATTATAATTAACTATATTAATCGAAATTCACTCACAGGG
389 CCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAG
* * * * * * *
21668506 CTACTTTACCGGATATGTAACATTAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGC
454 ATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGC
* * * * * *
21668571 CCTCCTAATTACTTCCAAACATGAATACTAAACTAATTACACATAAACAAAGTAGAAACTTCATA
519 CCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATA
** * * * * * *
21668636 TCCAAATCAATTACAGAAAAAGCTTGAAAGTCGGTTCATGAAGATGTTAAAATTTGAATTTCTTC
584 TTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTCTTC
*
21668701 AAATGACCTCAC
649 AAATTACCTCAC
* * * * * *
21668713 AAATCATGTTTGATCTTGGTAAATAAAACTAAAAACCATCTAATAGGTCGATTATGATTTAGGAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATA-GTCCATTTTGAGTTAGGAC
* * * *
21668778 ATCAATTGATTTGTGGATTTCCTCTCAAAAATGAAGATCCACCATTAAAGCACCTTAAGCGTTTG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTG
* *
21668843 AAGAATATGACACTGATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * ** *
21668908 CATCA-AAGAAACATGTTTAGAAATAATAATTACATTTTTTTCGTTCAAATTCCTTTGATTGAAA
195 CATCATAA-AAACAAGTTTAG-AATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAA
* *
21668972 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTCTATACTTTTGAGAATAATTCGTTC
258 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
* *
21669037 TAATTCTCA-TTATCCTGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAAGTAGACAGTAC
323 TAATTCT-AGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTAC
*
21669101 CACCTTTCAAAAGCTATATTAAGCACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAA
387 CACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAA
* *
21669166 AGATACTTTACCAGATTTATAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCCA
452 AGATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCA
* * * * *
21669231 GCCCGCCTAATCACTTCCACACATCAATAGTAAACGAATTACACATAAACTAAGCATAAATTTCA
517 GCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCA
* * * * * * **
21669296 CATTTAAATCAATTACACAACAATCCGAAAATTCAATTCATGAAGATGTTGAAATTC-AATTTTC
582 TATTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAA-TTTC
*
21669360 TTTAAATTACCTCAC
646 TTCAAATTACCTCAC
* *
21669375 AAATCATGTTTAATCTTGGTAAATAAGACTTAAAACCTTCTAATAGATCCATTTTGAGTTAGAAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATAG-TCCATTTTGAGTTAGGAC
* * * * * *
21669440 ATCCCTTGATTTGTGGATTTCTTCTCAAAATTCAAGATCCACTATTAAAGCAACTTATGCTTTAG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTG
* * * *
21669505 AAGAATATGACATTGAGAAAAT-ACCATGTAATTGACTCTCAGATCATGTATAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
* * * *
21669569 CATCATAAAAAAAAGTTTAGTAATAATAATTACCTTTGATTCATTCTAATTGCTTTGATTGATAA
195 CATCATAAAAACAAGTTTAG-AATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
* * * * *
21669634 TATTGATTCAAGAATCTTGAAAAATTTTAGAATATTTTTGCCTACTTTTGAGAATAATTCGTTTT
259 TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
* * * *
21669699 AATTCTAGTTATCCCGGTCCACTTCAAGACTCGAAGCTTTAAAAGAGGTAAAGTAGATATTACCA
324 AATTCTAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTACCA
* * * * * * **
21669764 CATTT-ACAAAGGTATTTTAAACACAAATTATAATGAACTATATTAATCGAAATTCACTCACAGG
389 CCTTTCA-AAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAA
* * * *
21669828 GATACTTTACAAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAG
453 GATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAG
* * * * * * *
21669893 CCCTCCTAATCACCTCCAAACATCAATACTAAACTAATTACAGATAAACAAAGTAGAAACTTCAG
518 CCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCAT
* * * * *
21669958 ATTTAAATCAATTACAAAAAAATCTGGAAAGTCTGTTCATGAAGATGTTAAAATTTGAATTTCTT
583 ATTTAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTCTT
*
21670023 CAACTTACCTCAC
648 CAAATTACCTCAC
* * * *
21670036 AAATCATGTTTGATCTTGGTAAATAAGACTAAAAACCTTCTAATAGGTCAATCTTGAGTTAAGAC
1 AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATA-GTCCATTTTGAGTTAGGAC
* * * * * *
21670101 ATCTATTCATTTGTGGATTTCCACTCACAATTCAAGATCCACCCTTAAAGCACCTTACGCTTTTG
65 ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTG
* *
21670166 AAGAATATGACATTCATAAAATAATCATGTAATTGACTCTCAAATCTTGTAAAAATATTTCTAAT
130 AAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAAT
** * * *
21670231 CATCA-AAGAAACAAGTTTAGGAATAATAATTACCTTTTTTTCGTTCAAATTCCTTTCATTTAAA
195 CATCATAA-AAACAAGTTTA-GAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAA
* * * *
21670295 ATATTGATTCAAGAATCTTAAGAAATTTCAAAATACTTTTGTCTACTTTTAAGAATAATTTGTTC
258 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTC
* * * *
21670360 TAATTCTTA-TAATCTTGGTCCTCTTCAAGACTTGAAGCTTTAACAGAGGTAAAATAGACATTAC
323 TAATTC-TAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTAC
21670424 CACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAA
387 CACCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAA
* * *
21670489 AGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATTGACCTCTCCG
452 AGATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCA
* * *
21670554 GCCCTCCTAATGACTTCCAAACATCAATAATAAACCAATTACACATAAATTAAGTATAAATTTCA
517 GCCCTCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCA
** *
21670619 TATTTAAATCAATTTCACAACGA-CATGGAAAGTCGGTTGATGAAGATGTTGAAATTCGAATTTC
582 TATTTAAATCAATTTCACAAAAATC-TGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTC
21670683 TTCAAATTACCTCAC
646 TTCAAATTACCTCAC
* *
21670698 AAATCATGTTTAATCCTCGTAAATAAGA
1 AAATCATGTTTAATCTTGGTAAATAAGA
21670726 TGATTAGCAC
Statistics
Matches: 5843, Mismatches: 719, Indels: 144
0.87 0.11 0.02
Matches are distributed among these distances:
646 1 0.00
647 110 0.02
648 69 0.01
649 2 0.00
650 2 0.00
651 9 0.00
652 289 0.05
653 88 0.02
654 2 0.00
655 4 0.00
656 204 0.03
657 7 0.00
659 1 0.00
660 503 0.09
661 643 0.11
662 3337 0.57
663 68 0.01
664 502 0.09
665 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (660 bp):
AAATCATGTTTAATCTTGGTAAATAAGACTAAAAACCTTCTAATAGTCCATTTTGAGTTAGGACA
TCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAAGCTTTTGA
AGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAATC
ATCATAAAAACAAGTTTAGAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAATA
TTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCTAA
TTCTAGTTATCCTGGTCCTCTTCAAGACTCGAAGCTTTAACAGAGGTAAAGTAGACATTACCACC
TTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAATCGAAATTCACTCACAAAGAT
ACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGATTCCTCACAAAATCGACCTCTCCAGCCC
TCCTAATCACTTCCAAACATCAATACTAAACCAATTACACATAAACTAAGTATAAATTTCATATT
TAAATCAATTTCACAAAAATCTGGAAAGTCGGTTCATGAAGATGTTGAAATTCGAATTTCTTCAA
ATTACCTCAC
Found at i:21672421 original size:662 final size:654
Alignment explanation
Indices: 21670731--21673160 Score: 3185
Period size: 662 Copynumber: 3.7 Consensus size: 654
21670721 TAAGATGATT
* * *
21670731 AGCACCTTATGCTTTTAAAGAATATGACATTGATAAAATATCATGTAATTAACCCTCAAATCATG
1 AGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATG
* * * * *
21670796 TAAAAATATTTCTAATCATCATAAAAA-AATCTTTAGAA-AAAAAATTACCATTGATTCATTATA
66 TAAAAATATTTCTAATCATCATAAAAACAA-CTTTAGAACTAATAACTACCTTTGATTCGTTATA
* * * * * * *
21670859 GTTCCTTTGATTGATAATA-TATATTTAGGAATCTTGTGAAATTTTAGAATATTTTTGTCTCCTA
130 ATTCCTTTGATTGAAAATATTA-ATTCAAGAATCTTGAGAAATTTCAGAATATTTTTGTCTACTA
* * *
21670923 TTGAGAATAATTTGTTCTAATTTTGGTTATCCCGGACCACTTCAAGACTCGAAGCTTCAAATGAG
194 TTGAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAA-GAG
* ** * *
21670988 ATAAAGTTGACATTACCACCTTTCC-ATATTAAAAACTTATTATAATTAACTATATTAATCGAAA
258 ATAAAGTAGACATTACCACCTTTCCTATATTAAAAACAAATTATAATTAACTATACTAATCAAAA
* *
21671052 TTCACTCACAATGATACTTTACCAGATTTCTAACAAT-AAG-TGAAAA-ACTCGATTCCTCACAA
323 TTCACTCACAAAGATACTTTACCAGATTTGTAAC-ATCAAGTTGAAAACA-T-GATTCCTCACAA
* *
21671114 AATCAACCTCTCAAGCCCTTCTAATCACTTCCAAACATCAATACCAAACTAATTACACATAAACT
385 AATCAACCTCTC-AGCCCTCCTAATCACTTCCAAACATCAATACTAAACTAATTACACATAAACT
* *
21671179 AAGTATAAATTTCACATTTAAATCAATTTCACAAAAATCTGGAAAGTCAATTCATGAAGATGTTA
449 AAGTATAAATTTCATATTTAAATCAATTTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTA
* * * *
21671244 AAATTCGAATTTATTCAAATTACCTCACACATCATGTTTGACCTTGGTAAATAAGATTAAAAACC
514 AAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGATTAAAAACC
21671309 TTCTAATAGGTCGATTTTGAGTTAGGACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGA
579 TTCTAATAGGTCGATTTTGAGTTAGGACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGA
*
21671374 TCCACCCATAA
644 TCCACCCTTAA
* * * * * *
21671385 AGCACGTTGAGCGTTTGAAGAATATGACATTAATAAAATAATCATGTGATTGACTCTCAAATC--
1 AGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATCAT
* * *
21671448 --------ATTTCTAATCATCATAAAAACAAGTTTAGAACTAAT-ACTTACATTTGATTCGTTCT
65 GTAAAAATATTTCTAATCATCATAAAAACAACTTTAGAACTAATAAC-TACCTTTGATTCGTTAT
* * * * *
21671504 AATTCCTTTGACTGAAAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTCCTT
129 AATTCCTTTGATTGAAAATATTAATTCAAGAATCTTGAGAAATTTCAGAATATTTTTGTCTACTA
* * *
21671569 TTGAGAATAATTCGTTCTAATTCTGGTTATCCCGATGCTCTTCAAGACTCGAAGCTTCAATA-AG
194 TTGAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAA-AGA-
* * * * * *
21671633 GGTAAAGTAGACATTACCACATTTCAAAAGCGATATTAAACACAAATTGTAATTAGCTATACTAA
257 GATAAAGTAGACATTACCACCTTTC-----CTATATTAAAAACAAATTATAATTAACTATACTAA
* * * **
21671698 TCAAAATTCACTCACAAAGATACTTTACCGGATTTGTAACATCAAGTCGAAAACTTGATTCCTTG
317 TCAAAATTCACTCACAAAGATACTTTACCAGATTTGTAACATCAAGTTGAAAACATGATTCCTCA
** * * * * * *
21671763 CAAAATTGACCTCTGCTGCCCTCCGAATGATTTCCAAACATCAATAATAAACAAATTACACATAA
382 CAAAATCAACCTCT-CAGCCCTCCTAATCACTTCCAAACATCAATACTAAACTAATTACACATAA
* * * * * * *
21671828 ATTATGTTTAAATTTCATATTTAAATCAATTTTACAACAATCTGGAAAGTCGGTTCATAAAGATG
446 ACTAAGTATAAATTTCATATTTAAATCAATTTCACAAAAATCTGGAAAGTCAGTTCATGAAGATG
* * *
21671893 TTGAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAAACTAAAA
511 TTAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGATTAAAA
**
21671958 ACCTTCTAATAGGTCGATTTTGAGTTAGGACATCCATTGATTTGTGGATTTATTCTCAAAATTCA
576 ACCTTCTAATAGGTCGATTTTGAGTTAGGACATCCATTGATTTGTGGATTTCCTCTCAAAATTCA
21672023 AGATCCACCCTTAA
641 AGATCCACCCTTAA
* * * *
21672037 AGCACCTTAAGCTTTTGAAGAATATGGCATTGAGAAAATAATCATGTGATTGACTCTCAAATCAT
1 AGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATCAT
* *
21672102 GTAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAACTAATAACTACCTTTGATTCGTTCTA
65 GTAAAAATATTTCTAATCATCATAAAAACAACTTTAGAACTAATAACTACCTTTGATTCGTTATA
* * *
21672167 ATTCCTTTGATTGAAAATATTAATTCAACAATCTTTAGAAATTTCA-AATTATTTTTGTCTACTT
130 ATTCCTTTGATTGAAAATATTAATTCAAGAATCTTGAGAAATTTCAGAA-TATTTTTGTCTACTA
* * *
21672231 TTGAGAATAATTCGTTCTAATTCTGGTTATCTCGGCCCTCTTCAAGACTCGAAGCTTCAACAGAG
194 TTGAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAA-AGAG
* * * *
21672296 GTAAAGTAGACATTACCATCTTTCAAAAGCTATATTAAACACAAATTGTAATTAACTATACTAAT
258 ATAAAGTAGACATTACCACCTTTC-----CTATATTAAAAACAAATTATAATTAACTATACTAAT
* *
21672361 CAAAATTCACTCACAAATATACTTTACCAGATTTGTAGCATCAAGTTGAAAACATGATTCCTCAC
318 CAAAATTCACTCACAAAGATACTTTACCAGATTTGTAACATCAAGTTGAAAACATGATTCCTCAC
* * * * *
21672426 AAAATCGACCTCTCCAGCCCTTCTAATCACATCCAAACATCAGTACTAAACTTATTACACATAAA
383 AAAATCAACCTCT-CAGCCCTCCTAATCACTTCCAAACATCAATACTAAACTAATTACACATAAA
* * *
21672491 CTAAGTATAAATTTCATATTTAAATCAATTTCACAAAAATATGGAAGGTCAGTTCATGAAGATGG
447 CTAAGTATAAATTTCATATTTAAATCAATTTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGT
* * *
21672556 TAAAATTCAAATTTCTTCAAAGTACCTCACAAATCATGTTTCATCTTGGTAAATAAGATTAAAAA
512 TAAAATTCGAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGATTAAAAA
21672621 -CTTCTAATAGGTCGATTTTGAGTTAGGACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAA
577 CCTTCTAATAGGTCGATTTTGAGTTAGGACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAA
21672685 GATCCACCCTTAA
642 GATCCACCCTTAA
* *
21672698 ATCACCTTAAGCTTTTGAAAAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATG
1 AGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATG
* * *
21672763 TAAAAATATTTCTAATCATCATAAAAAAAACTTTAGAAATAATAATTACCTTTGATTCGTTATAA
66 TAAAAATATTTCTAATCATCATAAAAACAACTTTAGAACTAATAACTACCTTTGATTCGTTATAA
* * * *
21672828 TTCCTTTGATTGATAATATTTATTTAGGAATCTTGAGAAATTTCAGAATATTTTTGTCTACTATT
131 TTCCTTTGATTGAAAATATTAATTCAAGAATCTTGAGAAATTTCAGAATATTTTTGTCTACTATT
* * * * * *
21672893 GAGAATAATTCGTTCCAATTTTGGTTAGCTCGGTCCACTTTAAGACTCAAAGCTTCAAAAGAGAT
196 GAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGACTCGAAGCTTC-AAAGAGAT
*** * * ** *
21672958 AAAGTAGATGCTACCACCTGT-CTATATTAAAAACAAATTATAATTAACTATATTAATTGAACTT
260 AAAGTAGACATTACCACCTTTCCTATATTAAAAACAAATTATAATTAACTATACTAATCAAAATT
* * * * * *
21673022 CACTCCCAAGGATACTTTACCCGATTTGGAACATCAAGTTAAAAACTTGATTCCTCACAAAATCA
325 CACTCACAAAGATACTTTACCAGATTTGTAACATCAAGTTGAAAACATGATTCCTCACAAAATCA
*
21673087 ACCTCTCTAGCCCTCCTAATCACTTCCAAACATCAATACGAAACTAATTACACATAAACTAAGTA
390 ACCTCTC-AGCCCTCCTAATCACTTCCAAACATCAATACTAAACTAATTACACATAAACTAAGTA
21673152 TAAATTTCA
454 TAAATTTCA
21673161 CATTCATCAT
Statistics
Matches: 1555, Mismatches: 188, Indels: 66
0.86 0.10 0.04
Matches are distributed among these distances:
645 29 0.02
646 146 0.09
647 2 0.00
651 3 0.00
652 373 0.24
653 8 0.01
654 193 0.12
655 20 0.01
660 209 0.13
661 116 0.07
662 453 0.29
663 3 0.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (654 bp):
AGCACCTTAAGCTTTTGAAGAATATGACATTGATAAAATATCATGTAATTGACCCTCAAATCATG
TAAAAATATTTCTAATCATCATAAAAACAACTTTAGAACTAATAACTACCTTTGATTCGTTATAA
TTCCTTTGATTGAAAATATTAATTCAAGAATCTTGAGAAATTTCAGAATATTTTTGTCTACTATT
GAGAATAATTCGTTCTAATTCTGGTTATCCCGGTCCACTTCAAGACTCGAAGCTTCAAAGAGATA
AAGTAGACATTACCACCTTTCCTATATTAAAAACAAATTATAATTAACTATACTAATCAAAATTC
ACTCACAAAGATACTTTACCAGATTTGTAACATCAAGTTGAAAACATGATTCCTCACAAAATCAA
CCTCTCAGCCCTCCTAATCACTTCCAAACATCAATACTAAACTAATTACACATAAACTAAGTATA
AATTTCATATTTAAATCAATTTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCG
AATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGATTAAAAACCTTCTAAT
AGGTCGATTTTGAGTTAGGACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCC
TTAA
Found at i:21673544 original size:392 final size:386
Alignment explanation
Indices: 21672778--21673552 Score: 1048
Period size: 386 Copynumber: 2.0 Consensus size: 386
21672768 ATATTTCTAA
* *
21672778 TCATCATAAAAAAAACTTTAGAAATAATAATTACCTTTGATTCGTTATAATTCCTTTGATTGATA
1 TCATCATAAAAAAAACTTTAGAAATAATAATTACCTTTGATTCGTTATAATTCATTTGATTGAAA
* * * * * *
21672843 ATATTTATTTAGGAATCTTGAGAAATTTCAGAATATTTTTGTCTACTATTGAGAATAATTCGTTC
66 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTCTGTCTACTATTAAGAATAATTCGTTC
* * * * **
21672908 CAATTTTGGTTAGCTCGGTCCACTTTAAGACTCAAAGCTTCAAAAGAGATAAAGTAGATGCTACC
131 CAATTCTAGTTAGCACGGTCCACTTCAAGACTCAAAGCTTCAAAAGAGATAAAGTAGACACTACC
* * * * *
21672973 ACCTGTCTATATTAAAAACAAATTATAATTAACTATATTAATTGAACTTCACTCCCAAGGATACT
196 ACCTGTCTATATTAAAAACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAGATACT
* * * *
21673038 TTACCCGATTTGGAACATCAAGTTAAAAACTTGATTCCTCACAAAATCAACCTCTCTAGCCCTCC
261 TTACCAGATTTGGAACATCAAGTCAAAAACTTGATTCCTCACAAAATCAACCTCTCCAACCCTCC
*
21673103 TAATCACTTCCAAACATCAATACGAAACTAATTACACATAAACTAAGTATAAATTTCACAT
326 TAATCACTTCCAAACATCAATACGAAACCAATTACACATAAACTAAGTATAAATTTCACAT
* ** * *
21673164 TCATCATAAAAACATGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCATTTGATTGAAA
1 TCATCATAAAAAAAACTTTAGAAATAATAATTACCTTTGATTCGTTATAATTCATTTGATTGAAA
*
21673229 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTCTGTCTACTTTTAAGAATAATTCGTTC
66 ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTCTGTCTACTATTAAGAATAATTCGTTC
* * * * * * * *
21673294 TAATTCTAGTTATCACGGTTCTCTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACC
131 CAATTCTAGTTAGCACGGTCCACTTCAAGACTCAAAGCTTCAAAAGAGATAAAGTAGACACTACC
* *
21673359 ACCTTTCAAAAGCTATATTAAACACAAATTGA-AATTAACTATACTAATCGAAATTCACTCACAA
196 ACCTGT------CTATATTAAAAACAAATT-ATAATTAACTATACTAATCGAAATTCACTCACAA
* * * **
21673423 AGATACTTTACCAGATTTGTAACATCAAGTCGAAAACTTGGTTCCTCACAAAATTGACCTCTCCA
254 AGATACTTTACCAGATTTGGAACATCAAGTCAAAAACTTGATTCCTCACAAAATCAACCTCTCCA
* * *
21673488 ACCCTCCTAATGACTTCCAAACATCAATACTAAACCAATTACACATAAATTAAGTATAAATTTCA
319 ACCCTCCTAATCACTTCCAAACATCAATACGAAACCAATTACACATAAACTAAGTATAAATTTCA
21673553 TATTTAAATC
Statistics
Matches: 334, Mismatches: 48, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
386 172 0.51
392 161 0.48
393 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (386 bp):
TCATCATAAAAAAAACTTTAGAAATAATAATTACCTTTGATTCGTTATAATTCATTTGATTGAAA
ATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTCTGTCTACTATTAAGAATAATTCGTTC
CAATTCTAGTTAGCACGGTCCACTTCAAGACTCAAAGCTTCAAAAGAGATAAAGTAGACACTACC
ACCTGTCTATATTAAAAACAAATTATAATTAACTATACTAATCGAAATTCACTCACAAAGATACT
TTACCAGATTTGGAACATCAAGTCAAAAACTTGATTCCTCACAAAATCAACCTCTCCAACCCTCC
TAATCACTTCCAAACATCAATACGAAACCAATTACACATAAACTAAGTATAAATTTCACAT
Found at i:21676960 original size:662 final size:661
Alignment explanation
Indices: 21673998--21677228 Score: 4178
Period size: 661 Copynumber: 4.9 Consensus size: 661
21673988 TGCCACCTTT
** * *
21673998 CTATATTAAA-AACAAATTGGAATTAACTATATTAAATGAAATTCTCTCACAAGGATACTTTACC
1 CTATATTAAACAA-AAATTATAATTAACTATATT-AATGAAATTCACTCATAAGGATACTTTACC
* *
21674062 GGATTTGGAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCACCTAATC
64 GGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCTCCTAATC
* * * *
21674127 ACCTCCAAAAATCAATACTAAACTAATTACACATTAACTAAGTATAAATTTCATATTTAAATAAA
129 ACTTCCAAACATCAATACTAAACTAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAA
* * * * **
21674192 TTTCACAAATATCTAGAGAGTCAATTCATGAAGATGTTAAAATTTTAATTTCTTCAAATTACCTC
194 TTTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCAAATTTCTTCAAATTACCTC
* * * * * * *
21674257 ACAAATCATGTTTGATGTAGGTAAATAAGACTAAAAACCTTCTAATAGGTCGATTTTGAGTTAGG
259 ACAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGA
* * * *
21674322 ACATCCATTGATTTGTCGATTTCCTCTCAAAATTAAATATCCACCCTTAAAGCACCTTAAGCTTT
324 ACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCCCTAAAGCACCTTAAGCTTT
* * *
21674387 CGAAGAGTATGACGTTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTA
389 TGAAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTA
* * *
21674452 ATCATCATCAAAACTAGTTTAGAGCTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAA
454 ATCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAA
21674517 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
519 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
* * * * * * *
21674582 CTAATTCTGGTTAGCCCGATTCGCTTCAAGACTCGAAGATTCAATATAGGTAAAGTAGACATTAC
584 CTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTAC
21674647 CACCTTTCAAAAG
649 CACCTTTCAAAAG
* * * * *
21674660 CGATATTAAACACAAATTGTAATTCAC--TA-T-A-G----T-A---AT---CA-A----A----
1 CTATATTAAACAAAAATTATAATTAACTATATTAATGAAATTCACTCATAAGGATACTTTACCGG
* * ** ** *
21674700 A--T-TAACATCAAGTCGAAAACAT-GATTCCACACAAAATTGACAACTCCAGCCCTCCTAATGA
66 ATTTGTAACATCAAGTCAAAAAC-TCGATTCCTCACAAAATCAACCTCTCCAGCCCTCCTAATCA
* * * * *
21674761 CTTCCAAACATCAATAATAAACCAAATACACATAAATTAGGTATAAATTTCATATTTAAATCAAT
130 CTTCCAAACATCAATACTAAACTAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAAT
* * * * * **
21674826 TTCACAACAATATGGAAAGTCGGTTCATGAAGATGTTGAAATTCAAATTTCTTGAAATTATGTCA
195 TTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCAAATTTCTTCAAATTACCTCA
* * * * *
21674891 CAAATCATGTTTAATCTTCGTAAGTAAGGCTGAAAACCTTGTAATAGATCCATTTTGAGGTAGAA
260 CAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAA
* * *
21674956 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGTTCCACCACTAAAGCACCTTATGCTTTT
325 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCCCTAAAGCACCTTAAGCTTTT
* * *
21675021 -AAGGAATATGACATTGATAAAAT-ATCATATAATTGACCCTCAAATCATGTAAAAATATTTCTA
390 GAA-GAATATGACATTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTA
* *
21675084 ATCATCATAAAAACAAGTTTAGAACTAATTATTACTTTTGATTCGTTCTAATTCCTTTGATTGAA
454 ATCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAA
* * *
21675149 AATATTGATTCATGAATCTTGAGAAAGTTCAAAATATTTTTGTCTACTTTTGACAATAATTCGTT
519 AATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
* * * * * *
21675214 CTAATTCTGGTTATCCCGGTCCTTTTCAACACTTGAAGCTTCAACATAGGGAAAGTAGACATTAC
584 CTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTAC
*
21675279 TACCTTTCAAAAG
649 CACCTTTCAAAAG
* * * * * *
21675292 CTATATTGAACACAAATTTTAATTAACTATACTAATCGAAATTCACTCACAAAGATACTTTACCG
1 CTATATTAAACAAAAATTATAATTAACTATATTAAT-GAAATTCACTCATAAGGATACTTTACCG
* * * * *
21675357 GATTTGTAACATCATGTCGAAAACAT-GATTCCTCACAAAATTGAA-CTCTCTATCCCTCCTAAT
65 GATTTGTAACATCAAGTCAAAAAC-TCGATTCCTCACAAAA-TCAACCTCTCCAGCCCTCCTAAT
* * * * * * * * * *
21675420 GACTTCCACATATCAACAATAAAATAATTACACATGAATTAATTATAAATTTCATATTTAAAGCA
128 CACTTCCAAACATCAATACTAAACTAATTACACATAAACTAAGTATAAATTTCATATTTAAATCA
* * *
21675485 ATTTCACAACAATCTGGAAAGTCAGTTCATGAAGATGTTGAAATTCGAATTTCTTCAAATTACCT
193 ATTTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCAAATTTCTTCAAATTACCT
* *
21675550 CACAAATCATGTTTAATGTTGGTAAATAAGACTGAAAACCTTTTAATAGATCCATTTTGAGTTAG
258 CACAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAG
* *
21675615 AACATCCATTAATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCCTTAAAGCACCTTAAGCTT
323 AACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCCCTAAAGCACCTTAAGCTT
* * *
21675680 TTGAAGAATATGACATTGATAAAAT-ATCATGTAATTGACCCTCAAATAATGTAAAAATATTTCT
388 TTGAAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCT
*
21675744 AATCATCATAAAAA-AA-TTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGA
453 AATCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGA
* * * * * * * * *
21675807 TAATATTGATTTAGGAATCTTGAGAAATTTTAGAATATTTGTGTCTACTATTGAGTATAATTTGT
518 AAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGT
* * * * * * **
21675872 TCTAATTTTGGTTATTCCGATCCACTTCAAGACTCAAAGCATCAAAAGATATAAAGTAGACATTA
583 TCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTA
21675937 CCACCTTT------
648 CCACCTTTCAAAAG
* ***
21675945 CTATATTAAA-AACAAATTATAATTAACTATATTAATTGAAAATCAAAAGATACAAGGATACTTT
1 CTATATTAAACAA-AAATTATAATTAACTATATTAA-TGAAATTC-ACTCAT--AAGGATACTTT
* *
21676009 ACCGGATTTGTAACATCAAGTGAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCTCTTA
61 ACCGGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCTCCTA
* * * *
21676074 ATCACTTCCAAACACCAATACAAAACTAATTACACATAAACCAAGTATAAATTTCACATTTAAAT
126 ATCACTTCCAAACATCAATACTAAACTAATTACACATAAACTAAGTATAAATTTCATATTTAAAT
* * * *
21676139 TAATTTCAC-AAAATTTGGAAAGTCAGTTCATGAAGATGTTAAAATTCGAATTTCTTCAATTTAC
191 CAATTTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCAAATTTCTTCAAATTAC
* * * * * *
21676203 CTCACAGATCATGTTTAATCTTGGTAAATAAGACTAAAAACATTCTAGTAGGTCGATTTTGAGTT
256 CTCACAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTT
* * * *
21676268 AGGACATCCATTGATTTTTGGATTTCCTCTCAAAATTCAAGATCCACCCCTAAAGTACTTTAAGC
321 AGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCCCTAAAGCACCTTAAGC
* *
21676333 TTTTGAAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAATTCATTTAAAAATATTT
386 TTTTGAAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTT
* *
21676398 CTAATCATCATAAAAACAAGTTTAGAACTAATAAGTACCTTTCATTCGTTCTAATTCCTTTGATT
451 CTAATCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATT
* * * *
21676463 GAAAATATTAATTCAAAAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGGACAATTC
516 GAAAATATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTC
* * * *
21676528 GTTCTAATTCTTGTTATCCCGGTCCTCTTCAAGAATCGAAGCTTCAAAAGAGGTAAAATAGATAT
581 GTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACAT
* *
21676593 TACCACATTTCCAAAG
646 TACCACCTTTCAAAAG
* * * *
21676609 CTAAATTAAACAAAAATTATAATTAACTATATTAATCGAATTTCACTCATAGGGATACTTTACCA
1 CTATATTAAACAAAAATTATAATTAACTATATTAAT-GAAATTCACTCATAAGGATACTTTACCG
*
21676674 GATATGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCTCCTAATCA
65 GATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCTCCTAATCA
* * * *
21676739 CTTTCAAACATCAATACTAAACTAATTTCACATAAACTAAGTATAAATTTCAAATTTAAGTCAAT
130 CTTCCAAACATCAATACTAAACTAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAAT
* * *
21676804 TTCATAAAAATCTGGAAAGTCAGTTCATAAAGATGTTAAAATTCAAATTTCTTCAAGTTACCTCA
195 TTCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCAAATTTCTTCAAATTACCTCA
* * *
21676869 CAAATCATGTTTAATCCTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTGACAA
260 CAAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAA
* * * * * *
21676934 CATCCACTAATTTGTTGATTTCCTCTCAAAATTCAAGATCCAGCCATAAATCACCTTAAGCTTTT
325 CATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCCCTAAAGCACCTTAAGCTTTT
* **
21676999 GAAGAATAAGACATTGATAAAATAATCACATGATTGACTCTCAAATCATGTAAAAATATTTCTAA
390 GAAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTAA
* *
21677064 TCATCATAAAAACAAGTTTAGAAATAATAATTACATTTGATTCGTTCTAATTCCTTTGATTGAAA
455 TCATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAA
*
21677129 ATATTGATTCAAGAATCCTT-AGAAATTTCAAAATATTTTTGTTTACTTTTGAGAATAATTCGTT
520 ATATTGATTCAAGAAT-CTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTT
* * *
21677193 CTAATTCTGGTTGTCCTGGTCCTCTTCAAGATTCGA
584 CTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGA
21677229 TAAAAAAATC
Statistics
Matches: 2217, Mismatches: 298, Indels: 108
0.85 0.11 0.04
Matches are distributed among these distances:
632 251 0.11
633 284 0.13
634 4 0.00
635 1 0.00
636 2 0.00
638 1 0.00
640 1 0.00
642 1 0.00
643 1 0.00
644 1 0.00
645 1 0.00
646 1 0.00
648 1 0.00
649 1 0.00
650 1 0.00
652 2 0.00
653 35 0.02
654 4 0.00
655 198 0.09
656 170 0.08
657 3 0.00
658 158 0.07
659 157 0.07
660 5 0.00
661 488 0.22
662 399 0.18
663 8 0.00
664 36 0.02
665 2 0.00
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (661 bp):
CTATATTAAACAAAAATTATAATTAACTATATTAATGAAATTCACTCATAAGGATACTTTACCGG
ATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAAATCAACCTCTCCAGCCCTCCTAATCAC
TTCCAAACATCAATACTAAACTAATTACACATAAACTAAGTATAAATTTCATATTTAAATCAATT
TCACAAAAATCTGGAAAGTCAGTTCATGAAGATGTTAAAATTCAAATTTCTTCAAATTACCTCAC
AAATCATGTTTAATCTTGGTAAATAAGACTGAAAACCTTCTAATAGATCCATTTTGAGTTAGAAC
ATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCCCTAAAGCACCTTAAGCTTTTG
AAGAATATGACATTGATAAAATAATCATGTGATTGACTCTCAAATCATGTAAAAATATTTCTAAT
CATCATAAAAACAAGTTTAGAACTAATAATTACCTTTGATTCGTTCTAATTCCTTTGATTGAAAA
TATTGATTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAATTCGTTCT
AATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAAAAGAGGTAAAGTAGACATTACCA
CCTTTCAAAAG
Found at i:21680842 original size:662 final size:660
Alignment explanation
Indices: 21679296--21681252 Score: 2968
Period size: 662 Copynumber: 3.0 Consensus size: 660
21679286 ATCATGTTTA
* *
21679296 ATTTTGAGTTAGAACATCCTTTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
1 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
* * *
21679361 CACATTATA-CTTTTGATGAATATAACATTGATAAAAT-ATCATGTAATTGACTCTCAAATCATG
66 CACCTTA-AGCTTTTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATG
* * * * * * * *
21679424 TAAAAATATTTATAGTCATCATAAAAGCAAGTTCAGAAGTAATAATTTCCTTTGATTCTTTCTAA
130 TAAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAA
* * * * * * *
21679489 TTCCTTTCATTCATAATATTGATTCAAGAATCTTAAGAAATTTCAAAATATTTTTGTTTACTTTC
195 TTCATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTC
* * *
21679554 GAGAATAGTTCGTTCTAATT-TTGGTTATCCCGGTGCTCTTCAAGACTCAAAGCATCAACAGAGG
260 GAGAATAGTTCGTTCTAATTCTT-GTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGG
* * * *
21679618 TAAAGTAGACATTACCACCTTTCCAAAGCTAGATTAAACACAAATTACAATTTACAATTCTAATC
324 TAAAGTAGACATTACCACCTTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATC
*
21679683 GAAATTCACTCACAAAGATAGTTTACCAGATTTGTAACATCAAGTCAAAAACTCGATTCCTCACA
389 GAAATTCACTCACAAAGATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCGATTCCTCACA
* *
21679748 AAATCGACCTCTCCA-TCCCTCCTAATCACTTCCAAACAACAATACTAAACAAATTACGTATAAA
454 AAATCGACCTCTCCAGT-CCTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAA
* * * *
21679812 CTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATTCAAAATATCGGTTC---AAGAAGT
518 CTAAGTATAAATTTCACATTTAAATCAATTTCACAAAAATT-GAAA-GTCGATTCATGAAGATGT
* * *
21679874 TGAAATTCAAGTTTCTTCAAATTACTTTACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATA
581 TGAAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATA
*
21679939 CCTTCGAATAGATCC
646 CCTTCTAATAGATCC
*
21679954 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTTAAGATCCACCATTAAAG
1 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
*
21680019 CACCTTAAGCTTTTGAAAAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
66 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
*
21680084 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTGTAAT
131 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
* * * *
21680149 TCATTTGATTGAAAATATTGGCTCCAGAATCTTGAGAAATTTCAAAAAATTTTAGTCTACTTTCG
196 TCATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCG
* *
21680214 AGAATAGTTCATTCTAATTCTTGTTATCTCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTA
261 AGAATAGTTCGTTCTAATTCTTGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTA
* *
21680279 AAGTAGACATTACCACCTTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATACTACTCAA
326 AAGTAGACATTACCACCTTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGA
21680344 AATTCACTCACAAAGATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAA
391 AATTCACTCACAAAGATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAA
21680409 ATCGACCTCTCCAGTCCTCCTAATCAC-TCCTAAACATCAATACTAAACAAATTACATATAAACT
456 ATCGACCTCTCCAGTCCTCCTAATCACTTCC-AAACATCAATACTAAACAAATTACATATAAACT
*
21680473 AAGTATAAATTTCACATTTAAATCAATTTCACAAAAATCTGGAAAGTCAATTCATGAAGATGTTG
520 AAGTATAAATTTCACATTTAAATCAATTTCACAAAAAT-T-GAAAGTCGATTCATGAAGATGTTG
* *
21680538 AAATTCAAATTTCTTTAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACC
583 AAATTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACC
21680603 TTCTAATAGATCC
648 TTCTAATAGATCC
* * * *
21680616 ATTTAGAGTTAGAACATCCATTAATTTGTGAATTCCCTCTCAAAATTCAAGATCCACCTTTAAAG
1 ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
*
21680681 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCAGGT
66 CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
* ** *
21680746 AAAAATATTTCTAATTATCATAAAAACAAGTTTAGAAATAATAATTAGGTTTGACTCATTGTAAT
131 AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
* *
21680811 TAATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCA
196 TCATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCG
* * *
21680876 AGAACAGTTCGTTCTAATTCTGGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAATAGAGGTA
261 AGAATAGTTCGTTCTAATTCTTGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTA
* *
21680941 AAGTAGACATTACCACCTTTTGAAAGATAGATTAAACACAAATTATAATTAACAATACTAATCGA
326 AAGTAGACATTACCACCTTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGA
* *
21681006 AATTCACTCAGAAATATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAA
391 AATTCACTCACAAAGATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAA
* * * * *
21681071 ATCGACCTCCCCAGCCCTACTAGTCACTTCCAAACATCAGTACTAAACAAATTACATATAAACTA
456 ATCGACCTCTCCAGTCCTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTA
*
21681136 AGTATAAATTTCA-A---AAA-CAA-TT--C----A--GAAAGTCGATTCATGAAGATGTTAAAA
521 AGTATAAATTTCACATTTAAATCAATTTCACAAAAATTGAAAGTCGATTCATGAAGATGTTGAAA
* * * *
21681187 TTCAAATTTATTCAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTC
586 TTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCTTC
21681252 T
651 T
21681253 GATTTATGAA
Statistics
Matches: 1195, Mismatches: 94, Indels: 32
0.90 0.07 0.02
Matches are distributed among these distances:
646 85 0.07
650 1 0.00
654 1 0.00
656 2 0.00
657 4 0.00
658 99 0.08
659 417 0.35
660 7 0.01
661 1 0.00
662 575 0.48
663 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (660 bp):
ATTTAGAGTTAGAACATCCATTGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAG
CACCTTAAGCTTTTGAAGAATATGACATTGATAAAATAATCATGTAATTGACTCTCAAATCATGT
AAAAATATTTCTAATCATCATAAAAACAAGTTTAGAAATAATAATTACCTTTGATTCATTGTAAT
TCATTTGATTGAAAATATTGGTTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCG
AGAATAGTTCGTTCTAATTCTTGTTATCCCGGTCCTCTTCAAGACTCGAAGCTTCAACAGAGGTA
AAGTAGACATTACCACCTTTCGAAAGCTAGATTAAACACAAATTATAATTAACAATACTAATCGA
AATTCACTCACAAAGATAGTTTACCAAATTTGTAACATCAAGTCAAAAACTCGATTCCTCACAAA
ATCGACCTCTCCAGTCCTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTA
AGTATAAATTTCACATTTAAATCAATTTCACAAAAATTGAAAGTCGATTCATGAAGATGTTGAAA
TTCAAATTTCTTCAAATTACCTCACAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCTTC
TAATAGATCC
Found at i:21682602 original size:665 final size:660
Alignment explanation
Indices: 21681252--21682938 Score: 2563
Period size: 665 Copynumber: 2.5 Consensus size: 660
21681242 AAAAACCTTC
* *
21681252 TGATTTATGAATTTCCTCTTAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGATGAAT
1 TGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGATGAAT
21681317 ATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATA
66 ATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATA
* * * * * * **
21681382 AAAACAAGTTCAGAAGTAATAATTACCTTTGATTCGTTCTAATTCCTTTCATTCATAATATTAAT
131 AAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCATTTGATTGAAAATATTGGT
* * * *
21681447 TCAAGAATCTTAAGAAGTTTCAAAATATTTTTGTTTACTTTCGAGAATAGTTTATTCTAATTCGG
196 TCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCATTCTAATTCGG
* * *
21681512 GTTATCCCGGTCCTCTTTAAGACTCGAAGCTTCAACAGAGGTAAAGTAGATATTACCACCTTTAC
261 GTTATCCCGGTCCTC-TCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCC
*
21681577 AAAGCTAGATTAAAAACAAATTATAATTAACAGTACTAATCGAAATTCACTCACAAAGATAGTTT
325 AAAGCTAGATTAAAAACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGATAGTTT
* * *
21681642 ACCGGATTTGTAACATAATGTCAAAAACTCGATTCCTCACAAAATCAACCTCCCCAGCGCTCCTA
390 ACCAGATTTGTAACATAATGTCAAAAACTCCATTCCTCACAAAATCAACCTCCCCAGCCCTCCTA
21681707 ATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAAAT
455 ATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAAAT
* * * *
21681772 TAATTTCAAAAAAATTCAGAAAGTTAATTCATGAAGATGTTAAAATTCAAATTTATTCAAATTTC
520 CAATTTCAAAAAAATCCAGAAAGTGAATTCATGAAGATGTTAAAATTCAAATTTATTCAAATTAC
* *
21681837 CTCACAAATCATGTTTAATCTTTATAAATAAGACTAAAAACCTTCTAATAGATCCATTTTGAGTT
585 CTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGATCCATTTAGAGTT
* * *
21681902 ATAATATCCTT
650 AGAACATCCAT
* *
21681913 TGATTTTTGGATTTCCTTTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGATGAAT
1 TGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGATGAAT
21681978 ATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATA
66 ATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATA
* * * * * *
21682043 AAAAGAAGTTTAGAAATAATAATTAGCTTTGACTCATTGTAATTAATTTGATTGAAAATATTGGT
131 AAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCATTTGATTGAAAATATTGGT
* *
21682108 TCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAACAGTTCGTTCTAATTCGG
196 TCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCATTCTAATTCGG
* * *
21682173 GTTATCCCGGTCCTCTCAAGGCTCGAAGCTTCAACAGAGGTAAAGTAGACGTTACCACCTATCCA
261 GTTATCCCGGTCCTCTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCCA
* *
21682238 AAGCTAGATTAAACATAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGATAGTTTA
326 AAGCTAGATTAAAAACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGATAGTTTA
* * *
21682303 CCAGATTTGTAA-ACTCAA-GTCAAAAATTAAATTCCATTCCTCACAAAATCGACCTCTCCAGCC
391 CCAGATTTGTAACA-T-AATGTC---AA--AAACTCCATTCCTCACAAAATCAACCTCCCCAGCC
* *
21682366 CTCCTAATCACTTCCAAACATCAATACTAAACAAATTACGTTTAAACTAAGTATAAATTTCACAT
449 CTCCTAATCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACAT
* * * *
21682431 TTAAATCAATTTCACAAAAATCC-GAAAAGTGGGA-TCATGAAGATGTTGAAATTCAAATTTCTT
514 TTAAATCAATTTCAAAAAAATCCAG-AAAGT-GAATTCATGAAGATGTTAAAATTCAAATTTATT
* * * *
21682494 CAAATTACCTCATAAATCATGTTTAATCTTGGTAAATAAGAGTAAATACCTTCTAATAGATCCAT
577 CAAATTACCTCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGATCCAT
21682559 TTAGAGTTAGAACATCCAT
642 TTAGAGTTAGAACATCCAT
* * * * **
21682578 TGATTTGTGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACCTTAGGTTTTTGAAAAAT
1 TGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGATGAAT
* * * *
21682643 ATGACATTGATAAAATAGTCATGTAATTGACTGTCAAATCATGTAAAATTTTTTCTAATCATCAT
66 ATGACATTGATAAAATA-TCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCAT
* * *
21682708 AAAAACAAGTTTAGAAATAATAATCACCTTTGATTTGTTTTAATTCATTTGATTGAAAATATTGG
130 AAAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCATTTGATTGAAAATATTGG
* *
21682773 TTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTTGAGAATAGTTCATTCTAATTCT
195 TTCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCATTCTAATTCG
* *
21682838 GGTTATCTCGGTCCTTTTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTC
260 GGTTATCCCGGTCC-TCTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTC
21682903 CAAAGCTAGATTAAAAACAAATTATAATTAACAATA
324 CAAAGCTAGATTAAAAACAAATTATAATTAACAATA
21682939 TCGACCTCTC
Statistics
Matches: 927, Mismatches: 88, Indels: 16
0.90 0.09 0.02
Matches are distributed among these distances:
659 1 0.00
660 121 0.13
661 253 0.27
663 2 0.00
664 1 0.00
665 294 0.32
666 175 0.19
667 80 0.09
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (660 bp):
TGATTTATGGATTTCCTCTCAAAATTCAAGATCCACCATTAAAGCACATTATGCTTTTGATGAAT
ATGACATTGATAAAATATCATGTAATTGACTCTCAAATCATGTAAAAATATTTCTAGTCATCATA
AAAACAAGTTTAGAAATAATAATTACCTTTGATTCGTTCTAATTCATTTGATTGAAAATATTGGT
TCAAGAATCTTGAGAAATTTCAAAATATTTTTGTCTACTTTCGAGAATAGTTCATTCTAATTCGG
GTTATCCCGGTCCTCTCAAGACTCGAAGCTTCAACAGAGGTAAAGTAGACATTACCACCTTTCCA
AAGCTAGATTAAAAACAAATTATAATTAACAATACTAATCGAAATTCACTCACAAAGATAGTTTA
CCAGATTTGTAACATAATGTCAAAAACTCCATTCCTCACAAAATCAACCTCCCCAGCCCTCCTAA
TCACTTCCAAACATCAATACTAAACAAATTACATATAAACTAAGTATAAATTTCACATTTAAATC
AATTTCAAAAAAATCCAGAAAGTGAATTCATGAAGATGTTAAAATTCAAATTTATTCAAATTACC
TCACAAATCATGTTTAATCTTGATAAATAAGACTAAAAACCTTCTAATAGATCCATTTAGAGTTA
GAACATCCAT
Found at i:21683292 original size:26 final size:25
Alignment explanation
Indices: 21683263--21683315 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
21683253 GTTTTTAACT
* *
21683263 AAGAATATGAATTGATTTTTTGAAAA
1 AAGAACATGAATTGATTTTCT-AAAA
*
21683289 AAGAACATGAGTTGATTTTCTAAAA
1 AAGAACATGAATTGATTTTCTAAAA
21683314 AA
1 AA
21683316 TTATGAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.47, C:0.04, G:0.15, T:0.34
Consensus pattern (25 bp):
AAGAACATGAATTGATTTTCTAAAA
Found at i:21685202 original size:37 final size:37
Alignment explanation
Indices: 21685152--21685230 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
21685142 TTATTACGAA
* * *
21685152 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
21685189 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
21685226 GTCTT
1 GTCTT
21685231 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:21685455 original size:47 final size:47
Alignment explanation
Indices: 21685348--21685666 Score: 593
Period size: 47 Copynumber: 6.7 Consensus size: 47
21685338 GCCCTTCGGG
*
21685348 ACTTATCACATTCATCACATCGGCCATTAGGCCCTAATCACATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGG-CCTTATCACATATATAC
*
21685397 ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21685444 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21685491 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
21685538 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21685585 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21685632 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
21685667 CTATCATTTC
Statistics
Matches: 265, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 235 0.89
48 26 0.10
49 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:21689632 original size:29 final size:29
Alignment explanation
Indices: 21689598--21689671 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
21689588 TCATCAACCA
*
21689598 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
21689627 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
21689656 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
21689672 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:21689717 original size:43 final size:43
Alignment explanation
Indices: 21689656--21689798 Score: 277
Period size: 43 Copynumber: 3.3 Consensus size: 43
21689646 ATTTCAAGTT
*
21689656 CGCACACCTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
21689699 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
21689742 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
21689785 CGCACACTTAGTGC
1 CGCACACTTAGTGC
21689799 TGAAAACCAA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (43 bp):
CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
Found at i:21691713 original size:37 final size:37
Alignment explanation
Indices: 21691663--21691741 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
21691653 TTATTACGAA
* * *
21691663 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
21691700 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
21691737 GTCTT
1 GTCTT
21691742 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:21691933 original size:47 final size:47
Alignment explanation
Indices: 21691859--21692222 Score: 703
Period size: 47 Copynumber: 7.7 Consensus size: 47
21691849 GCCCTTCGGG
*
21691859 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21691907 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21691954 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21692001 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21692048 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21692095 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21692142 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
21692189 ACTTTCACATTCATCACATC-GCCATTAGGCCTTA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTA
21692223 CTATCATTTC
Statistics
Matches: 315, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
46 14 0.04
47 297 0.94
48 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:21704190 original size:22 final size:21
Alignment explanation
Indices: 21704152--21704193 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
21704142 TTCACCTAAT
21704152 ATTTCTATTATTTTTATTTTA
1 ATTTCTATTATTTTTATTTTA
21704173 ATTTACTATT-TTTATTATTTT
1 ATTT-CTATTATTT-TTATTTT
21704194 GGTCTTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTCTATTATTTTTATTTTA
Found at i:21717681 original size:22 final size:22
Alignment explanation
Indices: 21717653--21717697 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
21717643 TGCAAAGTAT
21717653 ATTGGAGATGTATGGGGAATAG
1 ATTGGAGATGTATGGGGAATAG
21717675 ATTGGAGATGTATGGGGAATAG
1 ATTGGAGATGTATGGGGAATAG
21717697 A
1 A
21717698 CTTTATGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.40, T:0.27
Consensus pattern (22 bp):
ATTGGAGATGTATGGGGAATAG
Found at i:21720299 original size:24 final size:24
Alignment explanation
Indices: 21720272--21720326 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
21720262 TGTTGCCGAG
21720272 GAGCCCACTCAAACTACTATTGAA
1 GAGCCCACTCAAACTACTATTGAA
* * * *
21720296 GAGCCTATTCAACCTACTGTTGAA
1 GAGCCCACTCAAACTACTATTGAA
21720320 GAGCCCA
1 GAGCCCA
21720327 AAAAAGATGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (24 bp):
GAGCCCACTCAAACTACTATTGAA
Found at i:21724103 original size:78 final size:77
Alignment explanation
Indices: 21723918--21724100 Score: 264
Period size: 77 Copynumber: 2.4 Consensus size: 77
21723908 ATGTTGTATA
* * *
21723918 TAAAA-GGGGTTCCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGTAATCCACCAT
1 TAAAAGGGGGTTCCTATGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTAAGCCACCAT
21723982 ATCTTTGAAATG
66 ATCTTTGAAATG
* *
21723994 TGAAAGGGGGTTTCTATGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCG-ATAGCCACC
1 TAAAAGGGGGTTCCTATGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGTA-AGCCACC
*
21724058 GTATCTTTGAAATG
64 ATATCTTTGAAATG
*
21724072 -AAAAGGGGGTTGCTATGTGCTGATTCCCC
1 TAAAAGGGGGTTCCTATGTGCTGATTCCCC
21724101 CGAGGGGTTG
Statistics
Matches: 96, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
76 4 0.04
77 52 0.54
78 40 0.42
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (77 bp):
TAAAAGGGGGTTCCTATGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGTAAGCCACCAT
ATCTTTGAAATG
Found at i:21724193 original size:104 final size:103
Alignment explanation
Indices: 21724000--21724265 Score: 442
Period size: 104 Copynumber: 2.6 Consensus size: 103
21723990 AATGTGAAAG
* * *
21724000 GGGGTTTCTATGTGCTGATTCCCCGATTTCATTGGTGGTGCTAAGTGCGATAGCCACCGTATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTT
21724065 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGA
65 TGAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGA
*
21724104 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGATGCTAAGTGCGATATCCACCGTATCTTT
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTTT
21724169 GAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCGA
66 GAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCGA
* * **
21724208 GGGGTTGCTAAGTGCTGATTCCCCGATTCAGTAGTGGTGCTAAGTGCGGGATCCACCG
1 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCG
21724266 ATAACGGTTA
Statistics
Matches: 152, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
103 43 0.28
104 109 0.72
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (103 bp):
GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTTT
GAAATGAAAAGGGGGTTGCTATGTGCTGATTCCCCCGA
Found at i:21733101 original size:48 final size:48
Alignment explanation
Indices: 21733044--21733141 Score: 135
Period size: 48 Copynumber: 2.0 Consensus size: 48
21733034 TGGATGTGTA
* *
21733044 TTTGTTGGGGGTAAAGGAGAGGACTAAATAGTAGGAGAA-GATAGAGTG
1 TTTGTTGGGGGTAAAGGAAAGGACTAAATAGTACGA-AAGGATAGAGTG
* * *
21733092 TTTGTTGGGGGTAAAGGAAATGACTGAATAGTACGAAAGGCTAGAGTG
1 TTTGTTGGGGGTAAAGGAAAGGACTAAATAGTACGAAAGGATAGAGTG
21733140 TT
1 TT
21733142 AGTGGGTATA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
47 2 0.05
48 42 0.95
ACGTcount: A:0.34, C:0.04, G:0.37, T:0.26
Consensus pattern (48 bp):
TTTGTTGGGGGTAAAGGAAAGGACTAAATAGTACGAAAGGATAGAGTG
Found at i:21740014 original size:21 final size:22
Alignment explanation
Indices: 21739971--21740014 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
21739961 TTTAAAAATA
*
21739971 ATTAGATTTTAAATTTGTAGTT
1 ATTAGATTTTAAAATTGTAGTT
21739993 ATTA-ATTTTAAAAATTGT-GTT
1 ATTAGATTTT-AAAATTGTAGTT
21740014 A
1 A
21740015 ATTTTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.52
Consensus pattern (22 bp):
ATTAGATTTTAAAATTGTAGTT
Found at i:21740031 original size:17 final size:18
Alignment explanation
Indices: 21739994--21740031 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
21739984 TTTGTAGTTA
* *
21739994 TTAATTTTAAAAATTGTG
1 TTAATTTTAAAAATAGAG
21740012 TTAATTTT-AAAATAGAG
1 TTAATTTTAAAAATAGAG
21740029 TTA
1 TTA
21740032 TTATTTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (18 bp):
TTAATTTTAAAAATAGAG
Found at i:21743863 original size:25 final size:25
Alignment explanation
Indices: 21743835--21743908 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
21743825 GTTTCAACCC
*
21743835 ACAGTTCATGAGAGCATACCGATTT
1 ACAGCTCATGAGAGCATACCGATTT
* *
21743860 ACAGCTCATGGGAGCATACCAATTT
1 ACAGCTCATGAGAGCATACCGATTT
*
21743885 ACAGCTCA-AATGAGCATACCGATT
1 ACAGCTCATGA-GAGCATACCGATT
21743909 CAGAGCTCGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (25 bp):
ACAGCTCATGAGAGCATACCGATTT
Found at i:21743915 original size:25 final size:25
Alignment explanation
Indices: 21743846--21743928 Score: 103
Period size: 25 Copynumber: 3.3 Consensus size: 25
21743836 CAGTTCATGA
**
21743846 GAGCATACCGATTTACAGCTCATGG
1 GAGCATACCGATTTACAGCTCATAT
* *
21743871 GAGCATACCAATTTACAGCTCAAAT
1 GAGCATACCGATTTACAGCTCATAT
* * *
21743896 GAGCATACCGATTCAGAGCTCGTAT
1 GAGCATACCGATTTACAGCTCATAT
21743921 GAGCATAC
1 GAGCATAC
21743929 ATGTATAGGA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (25 bp):
GAGCATACCGATTTACAGCTCATAT
Found at i:21751733 original size:25 final size:25
Alignment explanation
Indices: 21751699--21751746 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
21751689 CCTATAGCTC
**
21751699 GTGAAAGCATACTGATTTACAGCAG
1 GTGAAAGCATACCAATTTACAGCAG
*
21751724 GTGACAGCATACCAATTTACAGC
1 GTGAAAGCATACCAATTTACAGC
21751747 TCGAGTGAGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (25 bp):
GTGAAAGCATACCAATTTACAGCAG
Found at i:21751757 original size:25 final size:25
Alignment explanation
Indices: 21751729--21751785 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
21751719 AGCAGGTGAC
* *
21751729 AGCATACCAATTTACAGCTCG-AGTG
1 AGCATACCAATTCAAAGCTCGTA-TG
21751754 AGCATACCAATTCAAAGCTCGTATG
1 AGCATACCAATTCAAAGCTCGTATG
21751779 AGCATAC
1 AGCATAC
21751786 ATGTTCAGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 28 0.97
26 1 0.03
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (25 bp):
AGCATACCAATTCAAAGCTCGTATG
Found at i:21759123 original size:33 final size:33
Alignment explanation
Indices: 21759068--21759377 Score: 157
Period size: 33 Copynumber: 8.7 Consensus size: 33
21759058 TTATCCGTTA
*
21759068 TCGGTGGATTCAGCACTTAGCAACCACCAATGAG
1 TCGG-GGAATCAGCACTTAGCAACCACCAATGAG
* * *
21759102 TCGGGGAATCAACACTTAGCAACCCCTTTCACATTTAAG
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A--TGAG
* *
21759141 ATACGGTGGGATCAGCACTTAGCAACCACCAATGAT
1 -T-CGG-GGAATCAGCACTTAGCAACCACCAATGAG
***
21759177 TAAAGGAATCAGCACTTAGCAACC-CC--TCG-G
1 TCGGGGAATCAGCACTTAGCAACCACCAAT-GAG
* *
21759207 --GGGG-ATCAGCACTTAGCAACCCCCTTCACATTTAAG
1 TCGGGGAATCAGCACTTAGCAA-CCAC--CA-A--TGAG
21759243 ATACGGTGGAATCAGCACTTAGCAACCACCAATGAG
1 -T-CGG-GGAATCAGCACTTAGCAACCACCAATGAG
* *
21759279 TCGGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAG
1 TCGGGGAATCAGCACTTAGCAACCAC---CA-A--TGAG
* * *
21759318 ATACAGTGGAATTAGCACTTAGCAACCACCAATGAA
1 -T-C-GGGGAATCAGCACTTAGCAACCACCAATGAG
*
21759354 TCGGTGAATCAGCACTTAGCAACC
1 TCGGGGAATCAGCACTTAGCAACC
21759378 CCTTGGAGGA
Statistics
Matches: 212, Mismatches: 29, Indels: 71
0.68 0.09 0.23
Matches are distributed among these distances:
27 15 0.07
28 4 0.02
29 1 0.00
30 1 0.00
31 2 0.01
32 2 0.01
33 78 0.37
34 8 0.04
35 3 0.01
36 13 0.06
37 2 0.01
38 3 0.01
39 12 0.06
40 4 0.02
41 9 0.04
42 55 0.26
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (33 bp):
TCGGGGAATCAGCACTTAGCAACCACCAATGAG
Found at i:21759241 original size:102 final size:102
Alignment explanation
Indices: 21759104--21759305 Score: 332
Period size: 102 Copynumber: 2.0 Consensus size: 102
21759094 CCAATGAGTC
* *
21759104 GGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
*
21759169 CCAATGATTAAAGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGAGTAAAGGAATCAGCACTTAGCAACCCCTCG
* *
21759206 GGGGGATCAGCACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
***
21759271 CCAATGAGTCGGGGAATCAGCACTTAGCAACCCCT
66 CCAATGAGTAAAGGAATCAGCACTTAGCAACCCCT
21759306 TTCACATTTA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 92 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (102 bp):
GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAGTAAAGGAATCAGCACTTAGCAACCCCTCG
Found at i:21759310 original size:75 final size:75
Alignment explanation
Indices: 21759181--21759381 Score: 299
Period size: 75 Copynumber: 2.8 Consensus size: 75
21759171 AATGATTAAA
*
21759181 GGAATCAGCACTTAGCAACC-CC--TCG-G--GGGG-ATCAGCACTTAGCAACCCCCTTCACATT
1 GGAATCAGCACTTAGCAACCACCAAT-GAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACATT
*
21759239 TAAGATACGGT
65 TAAGATACAGT
21759250 GGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTT
1 GGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTT
21759315 AAGATACAGT
66 AAGATACAGT
* * *
21759325 GGAATTAGCACTTAGCAACCACCAATGAATCGGTGAATCAGCACTTAGCAACCCCTT
1 GGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTT
21759382 GGAGGAATTA
Statistics
Matches: 120, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
69 20 0.17
70 2 0.02
71 1 0.01
72 2 0.02
74 4 0.03
75 91 0.76
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (75 bp):
GGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCACATTT
AAGATACAGT
Found at i:21759365 original size:177 final size:177
Alignment explanation
Indices: 21759069--21759409 Score: 540
Period size: 177 Copynumber: 1.9 Consensus size: 177
21759059 TATCCGTTAT
*
21759069 CGGTGGATTCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCAC
* * *
21759134 ATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGATTAAAGGAATCAGCACTTAGCAA
66 ATTTAAGATACAGTGGAATCAGCACTTAGCAACCACCAATGAATAAAGGAATCAGCACTTAGCAA
* * *
21759199 CCCCTCGGGGGGATCAGCACTTAGCAACCCCCTTCACATTTAAGATA
131 CCCCTCGGAGGAATCAGCACTTACCAACCCCCTTCACATTTAAGATA
*
21759246 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCAC
* **
21759311 ATTTAAGATACAGTGGAATTAGCACTTAGCAACCACCAATGAAT-CGGTGAATCAGCACTTAGCA
66 ATTTAAGATACAGTGGAATCAGCACTTAGCAACCACCAATGAATAAAG-GAATCAGCACTTAGCA
* * *
21759375 ACCCCTTGGAGGAATTAGCACTTCCCAACCCCCTT
130 ACCCCTCGGAGGAATCAGCACTTACCAACCCCCTT
21759410 TATATTCAAT
Statistics
Matches: 149, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
176 1 0.01
177 148 0.99
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.21
Consensus pattern (177 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCAC
ATTTAAGATACAGTGGAATCAGCACTTAGCAACCACCAATGAATAAAGGAATCAGCACTTAGCAA
CCCCTCGGAGGAATCAGCACTTACCAACCCCCTTCACATTTAAGATA
Found at i:21766244 original size:102 final size:102
Alignment explanation
Indices: 21766109--21766310 Score: 323
Period size: 102 Copynumber: 2.0 Consensus size: 102
21766099 CCAATGAGTC
* *
21766109 GGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGATACGGAGGGATCAACACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACGGAGGAATCAACACTTAGCAACCA
* *
21766174 CCAATGATTAGGGGAATCAGCACTTAGCAACCCCTCG
66 CCAATGAGTAGGGGAATCAACACTTAGCAACCCCTCG
* * * *
21766211 GGGGAATCAGCACTTAGCAACCCCCTTCGCATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACGGAGGAATCAACACTTAGCAACCA
*
21766276 CCAATGAGTCGGGGAATCAACACTTAGCAACCCCT
66 CCAATGAGTAGGGGAATCAACACTTAGCAACCCCT
21766311 TTCACATTTA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 91 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.19
Consensus pattern (102 bp):
GGGGAATCAACACTTAGCAACCCCCTTCACATTTAAGATACGGAGGAATCAACACTTAGCAACCA
CCAATGAGTAGGGGAATCAACACTTAGCAACCCCTCG
Found at i:21766272 original size:42 final size:41
Alignment explanation
Indices: 21766213--21766349 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 41
21766203 ACCCCTCGGG
*
21766213 GGAATCAGCACTTAGCAACCCCCTTCGCATTTAAGATACGGT
1 GGAATCAACACTTAGCAACCCCCTTC-CATTTAAGATACGGT
* * * *
21766255 GGAATCAGCACTTAGCAA---CC-ACCA-ATGAG-T-CGG-
1 GGAATCAACACTTAGCAACCCCCTTCCATTTAAGATACGGT
*
21766288 GGAATCAACACTTAGCAACCCCTTTCACATTTAAGATACGGT
1 GGAATCAACACTTAGCAACCCCCTTC-CATTTAAGATACGGT
*
21766330 GGAATCAACACTTAGAAACC
1 GGAATCAACACTTAGCAACC
21766350 ACCAATGAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
33 17 0.22
34 3 0.04
35 1 0.01
36 4 0.05
37 3 0.04
38 3 0.04
39 5 0.06
40 1 0.01
41 3 0.04
42 37 0.48
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (41 bp):
GGAATCAACACTTAGCAACCCCCTTCCATTTAAGATACGGT
Found at i:21766385 original size:75 final size:75
Alignment explanation
Indices: 21766211--21766386 Score: 289
Period size: 75 Copynumber: 2.3 Consensus size: 75
21766201 CAACCCCTCG
* * * *
21766211 GGGGAATCAGCACTTAGCAACCCCCTTCGCATTTAAGATACGGTGGAATCAGCACTTAGCAACCA
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAACACTTAGAAACCA
*
21766276 CCAATGAGTC
66 CCAATGAATC
*
21766286 GGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAACACTTAGAAACCA
1 GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAACACTTAGAAACCA
21766351 CCAATGAATC
66 CCAATGAATC
*
21766361 GGGGAATCAGCACTTAGTAACCCCTT
1 GGGGAATCAGCACTTAGCAACCCCTT
21766387 GGGGGAATCA
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
75 93 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (75 bp):
GGGGAATCAGCACTTAGCAACCCCTTTCACATTTAAGATACGGTGGAATCAACACTTAGAAACCA
CCAATGAATC
Found at i:21766385 original size:177 final size:177
Alignment explanation
Indices: 21766082--21766414 Score: 603
Period size: 177 Copynumber: 1.9 Consensus size: 177
21766072 ATCGGTAGAT
21766082 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGA
* * *
21766147 TACGGAGGGATCAACACTTAGCAACCACCAATGATTAGGGGAATCAGCACTTAGCAACCCCTCGG
66 TACGGAGGAATCAACACTTAGAAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGG
21766212 GGGAATCAGCACTTAGCAACCCCCTTCGCATTTAAGATACGGTGGAA
131 GGGAATCAGCACTTAGCAACCCCCTTCGCATTTAAGATACGGTGGAA
21766259 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGA
1 TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGA
* * * *
21766324 TACGGTGGAATCAACACTTAGAAACCACCAATGAATCGGGGAATCAGCACTTAGTAACCCCTTGG
66 TACGGAGGAATCAACACTTAGAAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGG
21766389 GGGAATCAGCACTTAGCAACCCCCTT
131 GGGAATCAGCACTTAGCAACCCCCTT
21766415 TATATTCAAT
Statistics
Matches: 149, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
177 149 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (177 bp):
TCAGCACTTAGCAACCACCAATGAGTCGGGGAATCAACACTTAGCAACCCCTTTCACATTTAAGA
TACGGAGGAATCAACACTTAGAAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGG
GGGAATCAGCACTTAGCAACCCCCTTCGCATTTAAGATACGGTGGAA
Found at i:21799707 original size:16 final size:16
Alignment explanation
Indices: 21799686--21799720 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
21799676 TGGTAGTAAT
21799686 ATTGTATAAAAAATTC
1 ATTGTATAAAAAATTC
*
21799702 ATTGTATAAAAATTTC
1 ATTGTATAAAAAATTC
21799718 ATT
1 ATT
21799721 AAGAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (16 bp):
ATTGTATAAAAAATTC
Found at i:21800959 original size:26 final size:27
Alignment explanation
Indices: 21800898--21800969 Score: 101
Period size: 26 Copynumber: 2.7 Consensus size: 27
21800888 CATTCCGACC
*
21800898 CACAACTCGTGTGAGCAGACCCATTTT
1 CACAACTCGTGTGAGCATACCCATTTT
* *
21800925 CACAACTCGTGTAAGCATACTC-TTTT
1 CACAACTCGTGTGAGCATACCCATTTT
*
21800951 CACAGCTCGTGTGAGCATA
1 CACAACTCGTGTGAGCATA
21800970 TATGTAACGG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 21 0.52
27 19 0.47
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (27 bp):
CACAACTCGTGTGAGCATACCCATTTT
Found at i:21805562 original size:35 final size:35
Alignment explanation
Indices: 21805516--21805586 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
21805506 AAAAATAGTA
21805516 AAACCACAAGGATTTGATGTTAAATAACAGCAAAT
1 AAACCACAAGGATTTGATGTTAAATAACAGCAAAT
* * *
21805551 AAACCATAAGGATTTGATGTTCAATAATAGCAAAT
1 AAACCACAAGGATTTGATGTTAAATAACAGCAAAT
21805586 A
1 A
21805587 TAGGTTGTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.14, T:0.25
Consensus pattern (35 bp):
AAACCACAAGGATTTGATGTTAAATAACAGCAAAT
Found at i:21811425 original size:51 final size:50
Alignment explanation
Indices: 21811260--21811445 Score: 212
Period size: 51 Copynumber: 3.7 Consensus size: 50
21811250 AGTGAAAGTG
** *
21811260 ATGGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGGT
* * * * * *
21811311 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCTGTTAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGT
* * * *
21811360 TTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGT
*
21811411 AATGGTCACATGTGTAGTACTATGTGCAGACTACT
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACT
21811446 TTGTGAACCG
Statistics
Matches: 109, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
49 2 0.02
50 37 0.34
51 69 0.63
52 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGGT
Found at i:21816489 original size:28 final size:28
Alignment explanation
Indices: 21816449--21816556 Score: 144
Period size: 28 Copynumber: 3.9 Consensus size: 28
21816439 ATATGACATA
* * * *
21816449 CAGTAATAATCTGGGCCTCAGCCCTAAG
1 CAGTAACAGTCTGGGCCTTAGCCCAAAG
*
21816477 CAGTAATAGTCTGGGCCTTAGCCCAAAG
1 CAGTAACAGTCTGGGCCTTAGCCCAAAG
* *
21816505 CATTAACAGCCTGGGCCTTAGCCCAAAG
1 CAGTAACAGTCTGGGCCTTAGCCCAAAG
*
21816533 CAGTAACAGTGTGGGCCTTAGCCC
1 CAGTAACAGTCTGGGCCTTAGCCC
21816557 TATACAGAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTTAGCCCAAAG
Found at i:21816958 original size:26 final size:27
Alignment explanation
Indices: 21816862--21817014 Score: 193
Period size: 27 Copynumber: 5.7 Consensus size: 27
21816852 TACCCTATAG
* * *
21816862 GGGTATTTCGATCATTTCAGCCTTC-A
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
21816888 GGGATATTTCAGTCATTTTACCCTTCGA
1 GGG-TATTTCGGTCATTTTACCCTTCGA
*
21816916 AGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
21816943 GGGT-TTTCGGTTATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* **
21816969 GGGTATTTCGATCATTTTACCCTTTAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
*
21816996 GGGTATTTCGGTTATTTTA
1 GGGTATTTCGGTCATTTTA
21817015 GGCCCATTAC
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 28 0.25
27 79 0.72
28 3 0.03
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTTCGA
Found at i:21816975 original size:53 final size:53
Alignment explanation
Indices: 21816862--21817014 Score: 209
Period size: 53 Copynumber: 2.8 Consensus size: 53
21816852 TACCCTATAG
* * * *
21816862 GGGTATTTCGATCATTTCAGCCTTCAGGGATATTTCAGTCATTTTACCCTTCGA
1 GGGTATTTCGATCATTTTACCCTTCAGGG-TATTTCGGTTATTTTACCCTTCGA
* *
21816916 AGGTATTTCGGTCATTTTACCCTTCGAGGGT-TTTCGGTTATTTTACCCTTCGA
1 GGGTATTTCGATCATTTTACCCTTC-AGGGTATTTCGGTTATTTTACCCTTCGA
*
21816969 GGGTATTTCGATCATTTTACCCTTTAAGGGTATTTCGGTTATTTTA
1 GGGTATTTCGATCATTTTACCC-TTCAGGGTATTTCGGTTATTTTA
21817015 GGCCCATTAC
Statistics
Matches: 87, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
53 45 0.52
54 38 0.44
55 4 0.05
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (53 bp):
GGGTATTTCGATCATTTTACCCTTCAGGGTATTTCGGTTATTTTACCCTTCGA
Found at i:21824678 original size:47 final size:47
Alignment explanation
Indices: 21824040--21824654 Score: 1005
Period size: 47 Copynumber: 13.0 Consensus size: 47
21824030 TGATAGTAAA
* * *
21824040 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGTGATAAG
* **
21824089 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATACGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
*
21824136 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
* *
21824183 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
21824230 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
*
21824277 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
* *
21824324 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
21824371 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
* *
21824418 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATGTGTGATAGG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
*
21824465 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATGTGTGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
* *
21824512 GCCTAATAGCCGACGTGATGAATGTGAAAGTGTATGTGTGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
* * *
21824559 GCCTAATAGTCGATATGATGAATGTGAAAGTGTATATATGTGATAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
* * *
21824606 GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAAG
1 GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
21824653 GC
1 GC
21824655 TGAGTGGCCA
Statistics
Matches: 538, Mismatches: 28, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
47 506 0.94
49 32 0.06
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.29
Consensus pattern (47 bp):
GCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
Found at i:21824874 original size:37 final size:37
Alignment explanation
Indices: 21824818--21824896 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
21824808 CCGAGCTCTA
* * *
21824818 AAGACCCGATGACTACGTGTGGGGATGT-TGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGAT-TATGTCCGGGT
*
21824855 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21824892 AAGAC
1 AAGAC
21824897 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21828369 original size:28 final size:28
Alignment explanation
Indices: 21828337--21828432 Score: 113
Period size: 28 Copynumber: 3.4 Consensus size: 28
21828327 AGTCACAATT
*
21828337 TGGGCCTAAGCCCTAAGCAGTAATAGTC
1 TGGGCCTAAGCCCTAAGCAGTAACAGTC
**
21828365 TGGGCCTGTGCCCTAAGCAGTAACAGTC
1 TGGGCCTAAGCCCTAAGCAGTAACAGTC
* * *
21828393 TGGGCATTAA-CCCAAAGCAGTAACAGTG
1 TGGGC-CTAAGCCCTAAGCAGTAACAGTC
*
21828421 TGGGCCTTAGCC
1 TGGGCCTAAGCC
21828433 TAATACAGAA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
27 2 0.04
28 53 0.95
29 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (28 bp):
TGGGCCTAAGCCCTAAGCAGTAACAGTC
Found at i:21828580 original size:26 final size:26
Alignment explanation
Indices: 21828551--21828601 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
21828541 ACACACCAAT
*
21828551 ATCGCAGCAG-AGCTGCCAGTAATAGA
1 ATCGCAG-AGAAGCTACCAGTAATAGA
*
21828577 ATCGCAGGGAAGCTACCAGTAATAG
1 ATCGCAGAGAAGCTACCAGTAATAG
21828602 TATATGTGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.35, C:0.22, G:0.27, T:0.16
Consensus pattern (26 bp):
ATCGCAGAGAAGCTACCAGTAATAGA
Found at i:21828828 original size:27 final size:27
Alignment explanation
Indices: 21828776--21829054 Score: 128
Period size: 27 Copynumber: 10.4 Consensus size: 27
21828766 CGGGGTATAA
*
21828776 TAGTCAATTTACCCTAT--AGGGTTATTT
1 TAGTCATTTTACCCT-TCGAGGG-TATTT
* *
21828803 TAGTCATTTCACCCTTCGGGGGTA-TT
1 TAGTCATTTTACCCTTCGAGGGTATTT
* * *
21828829 TCGATCATTGTCACCCTTTG-GGGTATTT
1 TAG-TCATT-TTACCCTTCGAGGGTATTT
** * * **
21828857 CGGCCATTTTACCTTTTAAGGGTATTT
1 TAGTCATTTTACCCTTCGAGGGTATTT
**
21828884 TAGTCATTTT-CCCTTCGAAAGTATTT
1 TAGTCATTTTACCCTTCGAGGGTATTT
** ** * *
21828910 CGGTCATTAGAACCTTCGAAGGTA-TT
1 TAGTCATTTTACCCTTCGAGGGTATTT
* *
21828936 TCGATCATTTTACCCTTC-AGGGGTAGTT
1 TAG-TCATTTTACCCTTCGA-GGGTATTT
* *
21828964 CAGTCATTTTACCCTTC-AGGATA-TT
1 TAGTCATTTTACCCTTCGAGGGTATTT
* * * * *
21828989 TCGATTATTTCACCCTTTGGGGGTA-TT
1 TAG-TCATTTTACCCTTCGAGGGTATTT
* *
21829016 TCGATCATTTTACCCTTTGAGGGTATTT
1 TAG-TCATTTTACCCTTCGAGGGTATTT
*
21829044 CAGTCATTTTA
1 TAGTCATTTTA
21829055 GGCCTATTAT
Statistics
Matches: 193, Mismatches: 46, Indels: 26
0.73 0.17 0.10
Matches are distributed among these distances:
25 3 0.02
26 48 0.25
27 121 0.63
28 21 0.11
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.42
Consensus pattern (27 bp):
TAGTCATTTTACCCTTCGAGGGTATTT
Found at i:21828989 original size:80 final size:80
Alignment explanation
Indices: 21828783--21829054 Score: 228
Period size: 80 Copynumber: 3.4 Consensus size: 80
21828773 TAATAGTCAA
* * * *** * * *
21828783 TTTACCCTATAGGGTTATTTTAGTCATTTCACCCTTCGGGGGTATTTCGATCATTGTCACCCTTT
1 TTTACCCT-TAGGGGTATTTCAGTCATTTTACCCTTCGAAAGTATTTCGATCATT-ACAACCTTC
* **
21828848 G-GGGTATTTCGGCCAT
64 GAAGGTATTTCGATCAT
* * * * *
21828864 TTTACCTTTTAAGGGTATTTTAGTCATTTT-CCCTTCGAAAGTATTTCGGTCATTAGAACCTTCG
1 TTTACC-CTTAGGGGTATTTCAGTCATTTTACCCTTCGAAAGTATTTCGATCATTACAACCTTCG
21828928 AAGGTATTTCGATCAT
65 AAGGTATTTCGATCAT
* * * * * *
21828944 TTTACCCTTCAGGGGTAGTTCAGTCATTTTACCCTTC--AGGATATTTCGATTATTTCACCCTTT
1 TTTACCCTT-AGGGGTATTTCAGTCATTTTACCCTTCGAAAG-TATTTCGATCATTACAACCTTC
**
21829007 GGGGGTATTTCGATCAT
64 GAAGGTATTTCGATCAT
*
21829024 TTTACCCTTTGAGGGTATTTCAGTCATTTTA
1 TTTACCCTTAG-GGGTATTTCAGTCATTTTA
21829055 GGCCTATTAT
Statistics
Matches: 155, Mismatches: 30, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
79 11 0.07
80 113 0.73
81 30 0.19
82 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.18, T:0.42
Consensus pattern (80 bp):
TTTACCCTTAGGGGTATTTCAGTCATTTTACCCTTCGAAAGTATTTCGATCATTACAACCTTCGA
AGGTATTTCGATCAT
Found at i:21828993 original size:53 final size:54
Alignment explanation
Indices: 21828932--21829054 Score: 144
Period size: 53 Copynumber: 2.3 Consensus size: 54
21828922 CCTTCGAAGG
21828932 TATTTCGATCATTTTACCCTTCAGGGGTAGTTC-AGTCATTTTACCC-TTCAGGA
1 TATTTCGATCATTTTACCCTTCAGGGGTAGTTCGA-TCATTTTACCCTTTCAGGA
* * ** * * *
21828985 TATTTCGATTATTTCACCCTTTGGGGGTATTTCGATCATTTTACCCTTTGAGGG
1 TATTTCGATCATTTTACCCTTCAGGGGTAGTTCGATCATTTTACCCTTTCAGGA
21829039 TATTTC-AGTCATTTTA
1 TATTTCGA-TCATTTTA
21829055 GGCCTATTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
53 40 0.69
54 18 0.31
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.44
Consensus pattern (54 bp):
TATTTCGATCATTTTACCCTTCAGGGGTAGTTCGATCATTTTACCCTTTCAGGA
Found at i:21834274 original size:22 final size:21
Alignment explanation
Indices: 21834244--21834288 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
21834234 TATTTAACCC
*
21834244 AAAATAATTTTGATTA-AAATT
1 AAAATAATTAT-ATTATAAATT
21834265 AAAATTAATTATATTATAAATT
1 AAAA-TAATTATATTATAAATT
21834287 AA
1 AA
21834289 TATTCATAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
AAAATAATTATATTATAAATT
Found at i:21838600 original size:39 final size:39
Alignment explanation
Indices: 21838545--21838623 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
21838535 CTTTCTCTGC
* * *
21838545 TACCATGTAATACAACTGATCTCCCATCAGAGTTTGACT
1 TACCATATAATACAACTGAGCTCCCATCAGAGTCTGACT
* *
21838584 TACCATATAATTCAACTGAGCTCCCGTCAGAGTCTGACT
1 TACCATATAATACAACTGAGCTCCCATCAGAGTCTGACT
21838623 T
1 T
21838624 GTGTAGTAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (39 bp):
TACCATATAATACAACTGAGCTCCCATCAGAGTCTGACT
Found at i:21844698 original size:27 final size:27
Alignment explanation
Indices: 21844667--21844844 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21844657 TAAATTGTAC
21844667 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21844694 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21844720 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21844748 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21844776 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21844803 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
21844830 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21844845 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21844781 original size:82 final size:81
Alignment explanation
Indices: 21844668--21844823 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21844658 AAATTGTACA
* *
21844668 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21844732 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
21844749 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21844814 TGCGAGTTGA
65 TGCGAATTGA
21844824 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:21844835 original size:82 final size:81
Alignment explanation
Indices: 21844664--21844844 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
21844654 GATTAAATTG
* *
21844664 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21844729 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
21844745 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21844809 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
21844827 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21844845 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Done.