Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 71 of 211
Found at i:21852885 original size:27 final size:27
Alignment explanation
Indices: 21852854--21853031 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21852844 TAAATTGTAC
21852854 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21852881 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21852907 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21852935 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21852963 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21852990 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
21853017 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21853032 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21852968 original size:82 final size:81
Alignment explanation
Indices: 21852855--21853010 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21852845 AAATTGTACA
* *
21852855 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21852919 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
21852936 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21853001 TGCGAGTTGA
65 TGCGAATTGA
21853011 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:21853022 original size:82 final size:81
Alignment explanation
Indices: 21852851--21853031 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
21852841 GATTAAATTG
* *
21852851 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21852916 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
21852932 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21852996 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
21853014 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21853032 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:21854837 original size:26 final size:26
Alignment explanation
Indices: 21854808--21854863 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
21854798 TGATAAAAAT
21854808 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
21854834 TGATAGTGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
21854860 TGAT
1 TGAT
21854864 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:21856504 original size:27 final size:27
Alignment explanation
Indices: 21856464--21856622 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
21856454 AGGAAGCGTC
*
21856464 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
21856491 CTGGTGGCTCTGCCAC-ATATATCT-AT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
21856517 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
21856545 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
21856572 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
21856599 CTGGTGACTTTGTCACAA-TATCTG
1 CTGGTGGCTCTGCCACAATTATCTG
21856623 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 8, Indels: 14
0.84 0.06 0.10
Matches are distributed among these distances:
26 12 0.10
27 100 0.85
28 5 0.04
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:21856544 original size:54 final size:54
Alignment explanation
Indices: 21856462--21856621 Score: 243
Period size: 54 Copynumber: 3.0 Consensus size: 54
21856452 GGAGGAAGCG
21856462 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
*
21856516 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTG
1 TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
* * * * *
21856570 TTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACTTTGTCACA-ATATCT
1 TCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGCCACATATATCT
21856622 GGCAGCCTCG
Statistics
Matches: 99, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
53 12 0.12
54 87 0.88
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
TCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTA
Found at i:21856603 original size:81 final size:80
Alignment explanation
Indices: 21856464--21856622 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 80
21856454 AGGAAGCGTC
*
21856464 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATCCTGGTGACTAT
21856529 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* *
21856545 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTAT-CTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATC--TATCCTGGTGAC
* *
21856607 TTTGTCACAATATCTG
63 TATGCCACAATATCTG
21856623 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
80 13 0.19
81 54 0.77
82 3 0.04
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:21964733 original size:28 final size:28
Alignment explanation
Indices: 21964693--21964818 Score: 209
Period size: 28 Copynumber: 4.5 Consensus size: 28
21964683 TAAATTGTTC
*
21964693 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
21964721 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
21964749 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
21964777 AGCACTAACTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
21964804 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21964819 GACTTAATAT
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 23 0.24
28 71 0.76
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:21972848 original size:28 final size:28
Alignment explanation
Indices: 21972783--21972933 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
21972773 GAGATTGGCG
* * * *
21972783 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
21972812 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
21972840 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
21972868 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
21972896 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
21972923 CTGAGTGTGCG
1 CTAAGTGTGCG
21972934 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:21980393 original size:192 final size:194
Alignment explanation
Indices: 21980059--21980444 Score: 598
Period size: 192 Copynumber: 2.0 Consensus size: 194
21980049 GCATACTTTT
* *
21980059 CAATAAATATTTCTTTCAAATAAAACTATATATATATATCATAATAACACACGTACCATCTTTAC
1 CAATAAATATTTCTTTCAAATAAAACTATATATATATATCATAATAACACACGTACCATCGTCAC
* * *
21980124 TATTCTTCATATACTTATCACTTATTAGAGATGTCTTTATCATTTACATATGTTTACTTTTACTT
66 TATTCTCCATATACTTATCACTTATTAGAGATGTCCTTATCATTTACATATATTTACTTTTACTT
* * * *
21980189 AAATAGTTTTCATGCAAGAGTTAGGATGGAGACTCACCTGAACTGTAGCTTGAACTCCAAACTC
131 AAACAGTTTTCATGCAAGAGTCAAGATGGAGACTCACCTGAACTGTAGCTTCAACTCCAAACTC
* * * * *
21980253 CAATCAATATTTCTTTCATATATAACT-T-TATATATATCATCATAACACATGTACCATCGTCAC
1 CAATAAATATTTCTTTCAAATAAAACTATATATATATATCATAATAACACACGTACCATCGTCAC
* *
21980316 TATTCTCCATATACTTATCACTT-TTCAGAGATGTCCTTATCATTTATATATATTTACTTTTGCT
66 TATTCTCCATATACTTATCACTTATT-AGAGATGTCCTTATCATTTACATATATTTACTTTTACT
21980380 TAAACAGTTTTCATGCAAGAGTCAAGATGGAGACTCACCTGAACTGTAGCTTCAACTCCAAACTC
130 TAAACAGTTTTCATGCAAGAGTCAAGATGGAGACTCACCTGAACTGTAGCTTCAACTCCAAACTC
21980445 GAGCACCCTT
Statistics
Matches: 175, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
191 2 0.01
192 148 0.85
193 1 0.01
194 24 0.14
ACGTcount: A:0.33, C:0.20, G:0.09, T:0.38
Consensus pattern (194 bp):
CAATAAATATTTCTTTCAAATAAAACTATATATATATATCATAATAACACACGTACCATCGTCAC
TATTCTCCATATACTTATCACTTATTAGAGATGTCCTTATCATTTACATATATTTACTTTTACTT
AAACAGTTTTCATGCAAGAGTCAAGATGGAGACTCACCTGAACTGTAGCTTCAACTCCAAACTC
Found at i:21981319 original size:6 final size:7
Alignment explanation
Indices: 21981289--21981318 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
21981279 GGTTTTCTCC
21981289 AAAATG-
1 AAAATGA
21981295 AAAATGA
1 AAAATGA
21981302 AAAATGA
1 AAAATGA
21981309 AAAATGA
1 AAAATGA
21981316 AAA
1 AAA
21981319 TAGCTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:21992205 original size:39 final size:39
Alignment explanation
Indices: 21992162--21992455 Score: 254
Period size: 39 Copynumber: 7.5 Consensus size: 39
21992152 ATTCAATTTT
* * *
21992162 AAGCATATATC-CTATTACACACATAATCACCTAACATCC
1 AAGCATATATCAC-AATACTCATATAATCACCTAACATCC
* * **
21992201 AAGCATATATCACAATACTTATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACCTAACATCC
*
21992240 AAGCATATATCACAATACTCGTATAATCACCTAACATCC
1 AAGCATATATCACAATACTCATATAATCACCTAACATCC
* * * **
21992279 AAGCATATATCACAATACTTATATAATAACATAACATTG
1 AAGCATATATCACAATACTCATATAATCACCTAACATCC
* *** **
21992318 AAGCATATATCAC-A-GCGTACATATAATCTTATAACATTT
1 AAGCATATATCACAATAC-T-CATATAATCACCTAACATCC
* * * *
21992357 AAGCATAGATCACAATACTCGTATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACCTAACATCC
* *** * **
21992396 AAGCATATATCACAATA-TACATATAGTCTTATATCATTT
1 AAGCATATATCACAATACT-CATATAATCACCTAACATCC
21992435 AAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
21992456 AAACATCTTT
Statistics
Matches: 211, Mismatches: 37, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.00
38 3 0.01
39 202 0.96
40 4 0.02
41 1 0.00
ACGTcount: A:0.44, C:0.21, G:0.05, T:0.30
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACCTAACATCC
Found at i:21992324 original size:117 final size:116
Alignment explanation
Indices: 21992201--21992453 Score: 339
Period size: 117 Copynumber: 2.2 Consensus size: 116
21992191 CCTAACATCC
*
21992201 AAGCATATATCACAATACTTATATAATCACATAACATTTAAGCATATATCACAATACTCGTATAA
1 AAGCATATATCACAATAC-TATATAATCACATAACATTTAAGCATAGATCACAATACTCGTATAA
* *
21992266 TCACCTAACATCCAAGCATATATCACAATACT-TATATAATAACATAACATTG
65 TCACATAACATCCAAGCATATATCACAATA-TACATATAATAACATAACATTG
* **
21992318 AAGCATATATCACAGCGTAC-ATATAATCTTATAACATTTAAGCATAGATCACAATACTCGTATA
1 AAGCATATATCACA--ATACTATATAATCACATAACATTTAAGCATAGATCACAATACTCGTATA
* * *** * *
21992382 ATCACATAACATTCAAGCATATATCACAATATACATATAGTCTTATATCATTT
64 ATCACATAACATCCAAGCATATATCACAATATACATATAATAACATAACATTG
21992435 AAGCATATATCACAATACT
1 AAGCATATATCACAATACT
21992454 CAAAACATCT
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
115 3 0.03
116 1 0.01
117 111 0.94
119 3 0.03
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.31
Consensus pattern (116 bp):
AAGCATATATCACAATACTATATAATCACATAACATTTAAGCATAGATCACAATACTCGTATAAT
CACATAACATCCAAGCATATATCACAATATACATATAATAACATAACATTG
Found at i:21992454 original size:78 final size:78
Alignment explanation
Indices: 21992201--21992455 Score: 332
Period size: 78 Copynumber: 3.3 Consensus size: 78
21992191 CCTAACATCC
* * *
21992201 AAGCATATATCACAATACTTATATAATCACATAACATTTAAGCATATATCACAATACT-CGTATA
1 AAGCATATATCACAATACTCATATAATCACATAACATTCAAGCATATATCACAATA-TACATATA
*** **
21992265 ATCACCTAACATCC
65 ATCTTATAACATTT
* * * ***
21992279 AAGCATATATCACAATACTTATATAATAACATAACATTGAAGCATATATCACAGCGTACATATAA
1 AAGCATATATCACAATACTCATATAATCACATAACATTCAAGCATATATCACAATATACATATAA
21992344 TCTTATAACATTT
66 TCTTATAACATTT
* * *
21992357 AAGCATAGATCACAATACTCGTATAATCACATAACATTCAAGCATATATCACAATATACATATAG
1 AAGCATATATCACAATACTCATATAATCACATAACATTCAAGCATATATCACAATATACATATAA
*
21992422 TCTTATATCATTT
66 TCTTATAACATTT
21992435 AAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
21992456 AAACATCTTT
Statistics
Matches: 153, Mismatches: 23, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
77 1 0.01
78 152 0.99
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (78 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTCAAGCATATATCACAATATACATATAA
TCTTATAACATTT
Found at i:21993535 original size:21 final size:21
Alignment explanation
Indices: 21993509--21993555 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
21993499 ATATTTGTGT
21993509 CAATTTATATAGCATTGGGCA
1 CAATTTATATAGCATTGGGCA
* *
21993530 CAATTTATATAGCATTGTGCG
1 CAATTTATATAGCATTGGGCA
21993551 CAATT
1 CAATT
21993556 ATTACTTCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (21 bp):
CAATTTATATAGCATTGGGCA
Found at i:22007877 original size:79 final size:79
Alignment explanation
Indices: 22007746--22008123 Score: 456
Period size: 79 Copynumber: 4.8 Consensus size: 79
22007736 ACATATTCAC
* * * *
22007746 TTTTAAGCATATATC-CTATTACACACATATTCACCTGACATCCAAGCATATATCACAATACTCA
1 TTTTAAGCATATATCAC-AATACACATATAATCACCTAACATCCAAGCATATATCACAATACTCA
*
22007810 TATAATCACATAATA
65 TATAATCACATAACA
*
22007825 TTTTAAGCATATATCACAATACCCATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
1 TTTTAAGCATATATCACAATACACATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
22007890 ATAATCACATAACA
66 ATAATCACATAACA
* * * *
22007904 TTTTAAGCATATATCACAATACTCGTATAATCACCTAACATCCAAGCATATATCACAGTACTCGT
1 TTTTAAGCATATATCACAATACACATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
**
22007969 ATAATCACATAGTA
66 ATAATCACATAACA
* ** ** * * ** *
22007983 -TTCAAGCATATATCACGGTGTACATATAATCTCATAACATTTAAGCATATATCACAATACTCGT
1 TTTTAAGCATATATCACAATACACATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
22008047 ATAATCACATAACA
66 ATAATCACATAACA
* * * * * ** *
22008061 -TTCAAGCATATATCACAATATACATATAATCTCATAAAATTTAAGCATATATAACAATACTCA
1 TTTTAAGCATATATCACAATACACATATAATCACCTAACATCCAAGCATATATCACAATACTCA
22008124 AAACATCTTT
Statistics
Matches: 266, Mismatches: 32, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
78 121 0.45
79 144 0.54
80 1 0.00
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.30
Consensus pattern (79 bp):
TTTTAAGCATATATCACAATACACATATAATCACCTAACATCCAAGCATATATCACAATACTCAT
ATAATCACATAACA
Found at i:22007883 original size:39 final size:39
Alignment explanation
Indices: 22007783--22008123 Score: 416
Period size: 39 Copynumber: 8.7 Consensus size: 39
22007773 TATTCACCTG
*
22007783 ACATCCAAGCATATATCACAATACTCATATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
* * * *
22007822 ATATTTTAAGCATATATCACAATACCCATATAATCACCTA
1 ACA-TTCAAGCATATATCACAATACTCATATAATCACATA
*
22007862 ACATCCAAGCATATATCACAATACTCATATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
* * *
22007901 ACATTTTAAGCATATATCACAATACTCGTATAATCACCTA
1 ACA-TTCAAGCATATATCACAATACTCATATAATCACATA
* * *
22007941 ACATCCAAGCATATATCACAGTACTCGTATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
** ** * *
22007980 GTATTCAAGCATATATCACGGT-GTACATATAATCTCATA
1 ACATTCAAGCATATATCACAATACT-CATATAATCACATA
* *
22008019 ACATTTAAGCATATATCACAATACTCGTATAATCACATA
1 ACATTCAAGCATATATCACAATACTCATATAATCACATA
*
22008058 ACATTCAAGCATATATCACAATA-TACATATAATCTCATA
1 ACATTCAAGCATATATCACAATACT-CATATAATCACATA
* * *
22008097 AAATTTAAGCATATATAACAATACTCA
1 ACATTCAAGCATATATCACAATACTCA
22008124 AAACATCTTT
Statistics
Matches: 257, Mismatches: 39, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
38 2 0.01
39 184 0.72
40 71 0.28
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (39 bp):
ACATTCAAGCATATATCACAATACTCATATAATCACATA
Found at i:22008075 original size:22 final size:22
Alignment explanation
Indices: 22008005--22008077 Score: 59
Period size: 22 Copynumber: 3.5 Consensus size: 22
22007995 TCACGGTGTA
* *
22008005 CATATAATCTCATAACATTTAAG
1 CATAT-ATCACATAACATTCAAG
22008028 CATATATCACA-ATAC--TC--G
1 CATATATCACATA-ACATTCAAG
*
22008046 TATA-ATCACATAACATTCAAG
1 CATATATCACATAACATTCAAG
22008067 CATATATCACA
1 CATATATCACA
22008078 ATATACATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 15
0.67 0.07 0.26
Matches are distributed among these distances:
17 8 0.21
18 5 0.13
19 2 0.05
20 1 0.03
21 5 0.13
22 13 0.33
23 5 0.13
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.30
Consensus pattern (22 bp):
CATATATCACATAACATTCAAG
Found at i:22018053 original size:19 final size:19
Alignment explanation
Indices: 22018022--22018059 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22018012 TAATCACAAC
22018022 AATTGATTATTATAATTAT
1 AATTGATTATTATAATTAT
*
22018041 AATT-ATTAGTTATTATTAT
1 AATTGATTA-TTATAATTAT
22018060 TGAATAATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
AATTGATTATTATAATTAT
Found at i:22029761 original size:27 final size:27
Alignment explanation
Indices: 22029705--22029762 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
22029695 AAAATCATAT
* * *
22029705 TTAATAATTTCATTTTAAAATATTTCA
1 TTAATAATTTAATTTTAAAATAATTAA
*
22029732 TTAATAATTTAAGTTTT-AATTAATTAA
1 TTAATAATTTAA-TTTTAAAATAATTAA
22029759 TTAA
1 TTAA
22029763 ATTGAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (27 bp):
TTAATAATTTAATTTTAAAATAATTAA
Found at i:22037733 original size:41 final size:41
Alignment explanation
Indices: 22037676--22037757 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
22037666 GTCCATCTGT
*
22037676 ATGCATGCGTAAGATCATCTTGGAAGATGGCGAGAAAGGGA
1 ATGCATGCGCAAGATCATCTTGGAAGATGGCGAGAAAGGGA
22037717 ATGCATGCGCAAGATCATCTTGGAAGATGGCGAGAAAGGGA
1 ATGCATGCGCAAGATCATCTTGGAAGATGGCGAGAAAGGGA
22037758 CGATTAATGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.34, C:0.13, G:0.34, T:0.18
Consensus pattern (41 bp):
ATGCATGCGCAAGATCATCTTGGAAGATGGCGAGAAAGGGA
Found at i:22040734 original size:19 final size:18
Alignment explanation
Indices: 22040699--22040738 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
22040689 TTTAAATAAT
22040699 TTTTGGGTATAAATAAATA
1 TTTTGGGTATAAATAAA-A
22040718 TTTTGGGT-TAAATTAAAA
1 TTTTGGGTATAAA-TAAAA
22040736 TTT
1 TTT
22040739 AAAAATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (18 bp):
TTTTGGGTATAAATAAAA
Found at i:22040738 original size:18 final size:19
Alignment explanation
Indices: 22040691--22040730 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
22040681 TAAATGGTTT
22040691 TAAAT-AAT-TTTTGGGTA
1 TAAATAAATATTTTGGGTA
22040708 TAAATAAATATTTTGGGT-
1 TAAATAAATATTTTGGGTA
22040726 TAAAT
1 TAAAT
22040731 TAAAATTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.24
18 8 0.38
19 8 0.38
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (19 bp):
TAAATAAATATTTTGGGTA
Found at i:22044133 original size:43 final size:43
Alignment explanation
Indices: 22044084--22044165 Score: 119
Period size: 43 Copynumber: 1.9 Consensus size: 43
22044074 CACATGGCTG
* * * * *
22044084 TGTCGCATGGTCGTGTGTTACACACGGTTGAGACACACGGCCA
1 TGTCGCATGGCCGTATGTCACACACGGCTAAGACACACGGCCA
22044127 TGTCGCATGGCCGTATGTCACACACGGCTAAGACACACG
1 TGTCGCATGGCCGTATGTCACACACGGCTAAGACACACG
22044166 CCCTTGTCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (43 bp):
TGTCGCATGGCCGTATGTCACACACGGCTAAGACACACGGCCA
Found at i:22049585 original size:48 final size:48
Alignment explanation
Indices: 22049515--22049840 Score: 229
Period size: 48 Copynumber: 6.6 Consensus size: 48
22049505 AAAATAGATT
* * * * *
22049515 TCTCCGTGGCCTACACACAGTCCATACCACCTTTGTATAATAACAGAC
1 TCTCGGTGGCCTACACACAGTCCGTGCCACCCTTGTATAATAACAGAA
* * * **
22049563 TCTCGGTGGCCTTCACATAGTCCGTGCCACCCATGTATCGTAACAGAA
1 TCTCGGTGGCCTACACACAGTCCGTGCCACCCTTGTATAATAACAGAA
* * ** * *
22049611 TATTGGTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAATAAAA
1 TCTCGGTGGCCTACACACAGTCCGTGCCACCCTTGTATAATAACAGAA
* * * * **
22049659 TATTGGTGGCCTGCACACAGTCCGTGCGTCCGTGCCACCCTTATATCTTAACAGAA
1 TCTCGGTGGCCT--ACACA---C---AGTCCGTGCCACCCTTGTATAATAACAGAA
* * * **
22049715 TATTGGTGGCCTGCACACAGTCCGTGCCACCCTTGTATTTTAACAGAA
1 TCTCGGTGGCCTACACACAGTCCGTGCCACCCTTGTATAATAACAGAA
* * * * * ** *
22049763 TATTGGTGGCCTGCACACTGCCCGTGCCACCCTTGTATCTTAACAAAA
1 TCTCGGTGGCCTACACACAGTCCGTGCCACCCTTGTATAATAACAGAA
* * * *
22049811 TATTGGTGGCTTGCACACAGTCCGTGCCAC
1 TCTCGGTGGCCTACACACAGTCCGTGCCAC
22049841 ATATGTGACC
Statistics
Matches: 237, Mismatches: 33, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
48 188 0.79
50 5 0.02
51 1 0.00
53 1 0.00
54 4 0.02
56 38 0.16
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
TCTCGGTGGCCTACACACAGTCCGTGCCACCCTTGTATAATAACAGAA
Found at i:22049684 original size:96 final size:96
Alignment explanation
Indices: 22049520--22049840 Score: 372
Period size: 96 Copynumber: 3.3 Consensus size: 96
22049510 AGATTTCTCC
* * * * * * * * *
22049520 GTGGCCTACACACAGTCCATACCACCTTTGTATAATAACAGACTCTCGGTGGCCTTCACATAGTC
1 GTGGCCTACACACAGTCCGTGCCACCCTTGTATATTAACAGAATATTGGTGGCCTGCACACAGTC
* *
22049585 CGTGCCACCCATGTATCGTAACAGAATATTG
66 CGTGCCACCCTTGTATCTTAACAGAATATTG
* * *
22049616 GTGGCCTACACACAGTCCGTGCCACCCTTGTATCTTAATAAAATATTGGTGGCCTGCACACAGTC
1 GTGGCCTACACACAGTCCGTGCCACCCTTGTATATTAACAGAATATTGGTGGCCTGCACACA---
*
22049681 CGTGCGTCCGTGCCACCCTTATATCTTAACAGAATATTG
63 -----GTCCGTGCCACCCTTGTATCTTAACAGAATATTG
* * * *
22049720 GTGGCCTGCACACAGTCCGTGCCACCCTTGTATTTTAACAGAATATTGGTGGCCTGCACACTGCC
1 GTGGCCTACACACAGTCCGTGCCACCCTTGTATATTAACAGAATATTGGTGGCCTGCACACAGTC
*
22049785 CGTGCCACCCTTGTATCTTAACAAAATATTG
66 CGTGCCACCCTTGTATCTTAACAGAATATTG
* *
22049816 GTGGCTTGCACACAGTCCGTGCCAC
1 GTGGCCTACACACAGTCCGTGCCAC
22049841 ATATGTGACC
Statistics
Matches: 193, Mismatches: 24, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
96 105 0.54
104 88 0.46
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.27
Consensus pattern (96 bp):
GTGGCCTACACACAGTCCGTGCCACCCTTGTATATTAACAGAATATTGGTGGCCTGCACACAGTC
CGTGCCACCCTTGTATCTTAACAGAATATTG
Found at i:22049717 original size:56 final size:52
Alignment explanation
Indices: 22049582--22049829 Score: 286
Period size: 48 Copynumber: 4.9 Consensus size: 52
22049572 CCTTCACATA
* * * *
22049582 GTCCGTGCCACCCATGTATCGTAACAGAATATTGGTGGCCT--ACACAC--A
1 GTCCGTGCCACCCTTGTATCTTAACAAAATATTGGTGGCCTGCACACACTGC
*
22049630 GTCCGTGCCACCCTTGTATCTTAATAAAATATTGGTGGCCTGCACACAGTCCGTGC
1 GTCCGTGCCACCCTTGTATCTTAACAAAATATTGGTGGCCTGCACACA---C-TGC
* *
22049686 GTCCGTGCCACCCTTATATCTTAACAGAATATTGGTGGCCTGCACACA----
1 GTCCGTGCCACCCTTGTATCTTAACAAAATATTGGTGGCCTGCACACACTGC
* *
22049734 GTCCGTGCCACCCTTGTATTTTAACAGAATATTGGTGGCCTG--CACACTGC
1 GTCCGTGCCACCCTTGTATCTTAACAAAATATTGGTGGCCTGCACACACTGC
*
22049784 --CCGTGCCACCCTTGTATCTTAACAAAATATTGGTGGCTTGCACACA
1 GTCCGTGCCACCCTTGTATCTTAACAAAATATTGGTGGCCTGCACACA
22049830 GTCCGTGCCA
Statistics
Matches: 173, Mismatches: 13, Indels: 26
0.82 0.06 0.12
Matches are distributed among these distances:
46 4 0.02
48 114 0.66
50 9 0.05
53 1 0.01
56 45 0.26
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (52 bp):
GTCCGTGCCACCCTTGTATCTTAACAAAATATTGGTGGCCTGCACACACTGC
Found at i:22055522 original size:48 final size:48
Alignment explanation
Indices: 22055448--22055704 Score: 282
Period size: 48 Copynumber: 5.4 Consensus size: 48
22055438 TAGATTTCTC
* * * * * * * * *
22055448 GGTGGCCTACACACAGTACGTACCACCTTTGTGTAATAACAGACTCTT
1 GGTGGCCTGCACACAGTCCATGCCACCCTTGTATATTAACAGAATATT
* * * * *
22055496 GGTGGCCTGTACATAGTCCGTGCCACCCTTATATCTTAACAGAATATT
1 GGTGGCCTGCACACAGTCCATGCCACCCTTGTATATTAACAGAATATT
* *
22055544 GGTGGCTTGCACACAGTCCATGCCACCCTTGTATATTAACAG-TTAATT
1 GGTGGCCTGCACACAGTCCATGCCACCCTTGTATATTAACAGAAT-ATT
* *
22055592 GGTGGCCTGCACACAGTCCATGCCACCCTTGTATCTTAACAAAATATT
1 GGTGGCCTGCACACAGTCCATGCCACCCTTGTATATTAACAGAATATT
* * ** * *
22055640 GGTGGCCTGCACACAGTCCGTGCCACCCTAGTACCTTAGCAAAATATT
1 GGTGGCCTGCACACAGTCCATGCCACCCTTGTATATTAACAGAATATT
22055688 GGTGGCCTGCACACAGT
1 GGTGGCCTGCACACAGT
22055705 ACGTGCCAGA
Statistics
Matches: 180, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
47 1 0.01
48 178 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (48 bp):
GGTGGCCTGCACACAGTCCATGCCACCCTTGTATATTAACAGAATATT
Found at i:22058388 original size:30 final size:30
Alignment explanation
Indices: 22058354--22058423 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
22058344 GTAGTCCCAA
* * * *
22058354 CCCTTTTCATAGCTCGATAGTCGAAGCTAT
1 CCCTTTTCATAACTCGATAGCCGAAACCAT
**
22058384 CCCTTTTCCCAACTCGATAGCCGAAACCAT
1 CCCTTTTCATAACTCGATAGCCGAAACCAT
*
22058414 CCCATTTCAT
1 CCCTTTTCAT
22058424 TATTTAATTG
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.34, G:0.11, T:0.30
Consensus pattern (30 bp):
CCCTTTTCATAACTCGATAGCCGAAACCAT
Found at i:22058535 original size:31 final size:30
Alignment explanation
Indices: 22058471--22058634 Score: 168
Period size: 30 Copynumber: 5.4 Consensus size: 30
22058461 GGTCATTTCC
* *
22058471 ATCCCTTTTCATAATTTGATAGCCAAAGTT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
* * *
22058501 ATCCCTTTTCAAAAATTCGATAGTCGAAGCT
1 ATCCCTTTTC-ATAATTTGATAGCCGAAGCT
** * * * * *
22058532 ATCCCTTTTCATTGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAATTTGATAGCCG-AAGCT
*
22058562 ATCCCTTTTCATAATTTGATAGCCGAGGCT
1 ATCCCTTTTCATAATTTGATAGCCGAAGCT
*
22058592 ATCCCTTTTCATTATTTTGATAGCCGAAGCT
1 ATCCCTTTTCA-TAATTTGATAGCCGAAGCT
22058623 ATCCCTTTTCAT
1 ATCCCTTTTCAT
22058635 TAACCGATGA
Statistics
Matches: 109, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
30 55 0.50
31 54 0.50
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGCCGAAGCT
Found at i:22058569 original size:91 final size:90
Alignment explanation
Indices: 22058442--22058635 Score: 271
Period size: 91 Copynumber: 2.1 Consensus size: 90
22058432 TGTAGTCACC
* ** *
22058442 ATCCCTTTTCATTTTTGATGGTCATTTCCATCCCTTTTCATAATTTGATAGCCAAAGTTATCCCT
1 ATCCCTTTTCATTTTCGATGGTCATCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCT
*
22058507 TTTCAAAAATTCGATAGTCGAAGCT
66 TTTCAAAAATTCGATAGCCGAAGCT
* * *
22058532 ATCCCTTTTCATTGTTCGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCGAGGCTATCCC
1 ATCCCTTTTCATT-TTCGATGGTCATCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCC
** * *
22058597 TTTTCATTATTTTGATAGCCGAAGCT
65 TTTTCAAAAATTCGATAGCCGAAGCT
22058623 ATCCCTTTTCATT
1 ATCCCTTTTCATT
22058636 AACCGATGAT
Statistics
Matches: 91, Mismatches: 12, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
90 13 0.14
91 78 0.86
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.41
Consensus pattern (90 bp):
ATCCCTTTTCATTTTCGATGGTCATCACCATCCCTTTTCATAATTTGATAGCCAAAGCTATCCCT
TTTCAAAAATTCGATAGCCGAAGCT
Found at i:22058635 original size:31 final size:31
Alignment explanation
Indices: 22058471--22058637 Score: 171
Period size: 31 Copynumber: 5.5 Consensus size: 31
22058461 GGTCATTTCC
* *
22058471 ATCCCTTTTCA-TAATTTGATAGCCAAAGTT
1 ATCCCTTTTCATTAATTTGATAGCCGAAGCT
** * *
22058501 ATCCCTTTTCAAAAATTCGATAGTCGAAGCT
1 ATCCCTTTTCATTAATTTGATAGCCGAAGCT
* * * * * *
22058532 ATCCCTTTTCATT-GTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATTAATTTGATAGCCG-AAGCT
*
22058562 ATCCCTTTTCA-TAATTTGATAGCCGAGGCT
1 ATCCCTTTTCATTAATTTGATAGCCGAAGCT
*
22058592 ATCCCTTTTCATTATTTTGATAGCCGAAGCT
1 ATCCCTTTTCATTAATTTGATAGCCGAAGCT
22058623 ATCCCTTTTCATTAA
1 ATCCCTTTTCATTAA
22058638 CCGATGATCA
Statistics
Matches: 111, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
29 1 0.01
30 53 0.48
31 57 0.51
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.39
Consensus pattern (31 bp):
ATCCCTTTTCATTAATTTGATAGCCGAAGCT
Found at i:22064478 original size:22 final size:23
Alignment explanation
Indices: 22064461--22064505 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
22064451 TTTTCACTTT
22064461 CAAACAT-TATTCAATTCAATTC
1 CAAACATATATTCAATTCAATTC
*
22064483 CACACATATATTCATCATTCAAT
1 CAAACATATATTCA--ATTCAAT
22064506 CACTCTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 6 0.32
23 6 0.32
25 7 0.37
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (23 bp):
CAAACATATATTCAATTCAATTC
Found at i:22064745 original size:51 final size:51
Alignment explanation
Indices: 22064684--22064874 Score: 230
Period size: 51 Copynumber: 3.8 Consensus size: 51
22064674 CCGGTTCACA
*
22064684 TAGTAGCCTGCACATAGTACTACACATGTGA-CTATCACTATTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCTATCACTATTCG-TACACG
* * * * * *
22064735 TAGTATCCTGCACATAGTACTACACACGTGATCGA--AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCTATCA-CTATTC-GTACACG
* * *
22064786 TAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCTT-GTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCTATCACTATTCGTACACG
22064836 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCTATCACT
22064875 TTAAGTTTCA
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
49 5 0.04
50 38 0.32
51 69 0.58
52 5 0.04
53 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCTATCACTATTCGTACACG
Found at i:22064889 original size:101 final size:102
Alignment explanation
Indices: 22064676--22064900 Score: 287
Period size: 101 Copynumber: 2.2 Consensus size: 102
22064666 TAATGATACC
*
22064676 GGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACTATCACTATTCGATACACGTAGTAT
1 GGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACTATCACTATTCGATACACGTAGTAG
* **
22064741 CCTGCACATAGTACTACACACGTGATCGAAGCTATCC
66 CCTGCACATAGTACTACACACGTGATCCAAGCTATAA
* * * *
22064778 GGTACGCATAGTAGCCTGCACATAGTACTACACATGTGACCTATCATTCTT-G-TACACGTAGTA
1 GGTTCACATAGTAGCCTGCACATAGTACTACACATGTGA-CTATCACTATTCGATACACGTAGTA
*
22064841 GCCTGCACATAGTACTACACACGTGA-CCATCA-CTTTAA
65 GCCTGCACATAGTACTACACACGTGATCCA--AGCTATAA
* * *
22064879 GTTTCACATAGTGGCCTACACA
1 GGTTCACATAGTAGCCTGCACA
22064901 CAGTCCATGC
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
100 2 0.02
101 56 0.53
102 39 0.37
103 9 0.08
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (102 bp):
GGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACTATCACTATTCGATACACGTAGTAG
CCTGCACATAGTACTACACACGTGATCCAAGCTATAA
Found at i:22071136 original size:39 final size:40
Alignment explanation
Indices: 22071033--22071257 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
22071023 TTGAATGATG
* *
22071033 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
22071072 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
22071113 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
22071152 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
22071192 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
22071231 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22071258 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 37 0.23
40 113 0.69
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:22071264 original size:80 final size:79
Alignment explanation
Indices: 22071088--22071290 Score: 241
Period size: 80 Copynumber: 2.6 Consensus size: 79
22071078 ACTAAGATCT
* * *
22071088 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 GAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT
* *
22071152 TCCGGGTTAAGTCCC
65 ACCGGGCTAAGTCCC
*
22071167 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 GAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAAT
*
22071231 AACCGGGCTATGTCCC
65 -ACCGGGCTAAGTCCC
** * * *
22071247 GAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 GAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAAGTCCCGAAGG
22071291 TACGTGATTT
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
79 51 0.47
80 57 0.53
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGATACTAATA
CCGGGCTAAGTCCC
Found at i:22071280 original size:119 final size:119
Alignment explanation
Indices: 22071033--22071263 Score: 279
Period size: 119 Copynumber: 1.9 Consensus size: 119
22071023 TTGAATGATG
* * * *
22071033 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
* **
22071098 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAAT
* * * **
22071152 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAA
* *
22071215 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAG
22071264 TAGCTATATC
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
118 3 0.03
119 66 0.70
120 25 0.27
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAAT
Found at i:22073748 original size:50 final size:50
Alignment explanation
Indices: 22073581--22073769 Score: 211
Period size: 51 Copynumber: 3.7 Consensus size: 50
22073571 CCGTTTCACA
* * *
22073581 TAGTAGCGTACACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCA-TATCCGGTACACG
* * * * * *
22073632 TAGTGGCCTGCAAATAGTATTACACATGTGATCGAAGC-TATCCGGTACACA
1 TAGTAGCCTGCACATAGTACTACACATGTGA-C-CATCATATCCGGTACACG
* * *
22073683 TAGTAGCCTGGACATAGTACTACACATGCGACCTATCAT-TCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC-ATCATATCCGGTACACG
*
22073733 TAGTAGCCTGCACATAGTACTACACACGTGACCATCA
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCA
22073770 CTTTCACTTT
Statistics
Matches: 113, Mismatches: 21, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
49 4 0.04
50 42 0.37
51 64 0.57
52 1 0.01
53 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCATATCCGGTACACG
Found at i:22073784 original size:101 final size:102
Alignment explanation
Indices: 22073571--22073797 Score: 248
Period size: 101 Copynumber: 2.2 Consensus size: 102
22073561 ATTAATGATA
* *
22073571 CCGTTTCACATAGTAGCGTACACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGT
1 CCGTTTCACATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGT
* * * *
22073636 GGCCTGCAAATAGTATTACACATGTGATCGAAGCTAT
66 AGCCTGCAAATAGTACTACACACGTGATCCAAGCTAT
* * ** * *
22073673 CCGGTACACATAGTAGCCTGGACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAG
1 CCGTTTCACATAGTAGCCTACACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAG
* *
22073736 TAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTTT
65 TAGCCTGCAAATAGTACTACACACGTGATCCA--AGCTAT
*
22073774 CAC-TTTCACATAGTGGCCTACACA
1 C-CGTTTCACATAGTAGCCTACACA
22073798 CATTCGATGC
Statistics
Matches: 102, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
100 2 0.02
101 56 0.55
102 40 0.39
103 4 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (102 bp):
CCGTTTCACATAGTAGCCTACACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGT
AGCCTGCAAATAGTACTACACACGTGATCCAAGCTAT
Found at i:22083305 original size:13 final size:13
Alignment explanation
Indices: 22083287--22083315 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22083277 ATATATTCAT
22083287 AATAATAAAATAA
1 AATAATAAAATAA
22083300 AATAATAAAATAA
1 AATAATAAAATAA
22083313 AAT
1 AAT
22083316 TCAAGAGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AATAATAAAATAA
Found at i:22085771 original size:50 final size:50
Alignment explanation
Indices: 22085696--22085938 Score: 227
Period size: 50 Copynumber: 4.7 Consensus size: 50
22085686 TTTCTTGTAT
* * * * * ** *
22085696 TGCCAATACCATATCCCAGATATGGTTTTACATGGGAGTTCTAATATAGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATAGG
* ** *
22085746 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCATTTCA-G
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAT-AGG
* * * * *
22085796 TGCCAACGCCATGTCCCAAACATGGTTTTACATGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATAGG
* * *
22085846 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCATCTCAATGA
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCAT-A--T--A-GG
*
22085902 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA
22085939 TCTCATCCTC
Statistics
Matches: 156, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
50 117 0.75
51 1 0.01
53 1 0.01
56 37 0.24
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATAGG
Found at i:22085813 original size:100 final size:105
Alignment explanation
Indices: 22085704--22085938 Score: 282
Period size: 100 Copynumber: 2.3 Consensus size: 105
22085694 ATTGCCAATA
* * ** *
22085704 CCATATCCCAGATATGGTTTTACATGGGAGTTCTAATATAGGTGCCCATGCCATGTCCCAAACAT
1 CCATGTCCCAGACATGGTTTTACATGGGACCTCTAATATAGGTGCCAATGCCATGTCCCAAACAT
*
22085769 GGTCTTACGGGGGACCTCTCAT-T-TC-A-G-TGCCAACG
66 GGTCTTACAGGGGACCTCTCATATCTCAATGATGCCAACG
* * * * * * *
22085804 CCATGTCCCAAACATGGTTTTACATGAGACCTCTCATCTCGGTGCCAATGCCATGTCCTAGACAT
1 CCATGTCCCAGACATGGTTTTACATGGGACCTCTAATATAGGTGCCAATGCCATGTCCCAAACAT
* *
22085869 GGTCTTACATGGGACCTCTCATCATCTCAATGATGCCAATG
66 GGTCTTACAGGGGACCTCTCAT-ATCTCAATGATGCCAACG
*
22085910 CCATGTCCCAGACATGGTCTTACATGGGA
1 CCATGTCCCAGACATGGTTTTACATGGGA
22085939 TCTCATCCTC
Statistics
Matches: 111, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
100 73 0.66
102 1 0.01
103 2 0.02
104 1 0.01
105 1 0.01
106 33 0.30
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (105 bp):
CCATGTCCCAGACATGGTTTTACATGGGACCTCTAATATAGGTGCCAATGCCATGTCCCAAACAT
GGTCTTACAGGGGACCTCTCATATCTCAATGATGCCAACG
Found at i:22085906 original size:56 final size:52
Alignment explanation
Indices: 22085745--22085945 Score: 232
Period size: 50 Copynumber: 3.9 Consensus size: 52
22085735 TCTAATATAG
* ** *
22085745 GTGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGAC-CTC-TCATTTCA
1 GTGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTCTCATCATCTCA
* * * *
22085795 GTGCCAACGCCATGTCCCAAACATGGTTTTACATGAGAC-CTC-TCATCTCG
1 GTGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTCTCATCATCTCA
* *
22085845 GTGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCATCTCAA
1 GTGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA-CTCTCATCATCTC-A
*
22085899 TGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-TCTCATC
1 -G-TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTCTCATC
22085946 CTCTTAATGT
Statistics
Matches: 130, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
50 75 0.58
51 1 0.01
52 3 0.02
53 7 0.05
54 7 0.05
55 1 0.01
56 36 0.28
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (52 bp):
GTGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTCTCATCATCTCA
Found at i:22090828 original size:18 final size:18
Alignment explanation
Indices: 22090805--22090842 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
22090795 ATTGACGGTC
*
22090805 ATCGACTAATGAAAAGGG
1 ATCGACGAATGAAAAGGG
22090823 ATCGACGAATGAAAAGGG
1 ATCGACGAATGAAAAGGG
22090841 AT
1 AT
22090843 AGCTTCGGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.11, G:0.29, T:0.16
Consensus pattern (18 bp):
ATCGACGAATGAAAAGGG
Found at i:22090916 original size:30 final size:29
Alignment explanation
Indices: 22090831--22090995 Score: 147
Period size: 30 Copynumber: 5.5 Consensus size: 29
22090821 GGATCGACGA
*
22090831 ATGAAAAGGGATAGCTTCGGCTATC-AATT
1 ATGAAAAGGGAT-GGTTCGGCTATCAAATT
* *
22090860 ATGAAAAGGGATGGTGAT-GACCATCAAATT
1 ATGAAAAGGGATGGT--TCGGCTATCAAATT
* *
22090890 TTTAAAAGGGATGGTGTCGGCTATCAAAATT
1 ATGAAAAGGGATGGT-TCGGCTATC-AAATT
* * *
22090921 ATGAAAAGAGATGGCTTCGACTATCAAATC
1 ATGAAAAGGGATGG-TTCGGCTATCAAATT
* *
22090951 ATGAAAAAGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGAT-GGTTCGGCTATCAAATT
22090981 ATGTAAAA-GGATGGT
1 ATG-AAAAGGGATGGT
22090996 AATGACCATC
Statistics
Matches: 109, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
28 2 0.02
29 20 0.18
30 57 0.52
31 29 0.27
32 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.27
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTCGGCTATCAAATT
Found at i:22090947 original size:61 final size:58
Alignment explanation
Indices: 22090831--22091007 Score: 198
Period size: 61 Copynumber: 2.9 Consensus size: 58
22090821 GGATCGACGA
*
22090831 ATGAAAAGGGATAGCTTCGGCTATC-AATTATGAAAAGGGATGGTGATGACCATCAAATT
1 ATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAA-GGATGGT-ATGACCATCAAATC
* * * *
22090890 TTTAAAAGGGAT-GGTGTCGGCTATCAAAATTATGAAAAGAGATGGCT-TCGACTATCAAATC
1 ATGAAAAGGGATAGCT-TCGGCTATC-AAATTATGAAAAG-GATGG-TAT-GACCATCAAATC
*
22090951 ATGAAAAAGGATAGCTTCGGCTATCAAATTATGTAAAAGGATGGTAATGACCATCAA
1 ATGAAAAGGGATAGCTTCGGCTATCAAATTATG-AAAAGGATGGT-ATGACCATCAA
22091008 CAATGAAAAA
Statistics
Matches: 98, Mismatches: 10, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
58 2 0.02
59 20 0.20
60 23 0.23
61 50 0.51
62 3 0.03
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.26
Consensus pattern (58 bp):
ATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGATGGTATGACCATCAAATC
Found at i:22091007 original size:30 final size:29
Alignment explanation
Indices: 22090856--22091049 Score: 99
Period size: 30 Copynumber: 6.4 Consensus size: 29
22090846 TTCGGCTATC
* *
22090856 AATTATGAAAAGGGATGGTGATGACCATCA
1 AATTATGAAAA-GGATGGTAACGACCATCA
* * ** * *
22090886 AATTTTTAAAAGGGATGGTGTCGGCTATCAA
1 AATTATGAAAA-GGATGGTAACGACCATC-A
* *
22090917 AATTATGAAAAGAGATGGCT-TCGACTATCA
1 AATTATGAAAAG-GATGG-TAACGACCATCA
* * * * *
22090947 AATCATGAAAAAGGATAGCT-TCGGCTATCA
1 AATTATG-AAAAGGAT-GGTAACGACCATCA
*
22090977 AATTATGTAAAAGGATGGTAATGACCATCA
1 AATTATG-AAAAGGATGGTAACGACCATCA
* *
22091007 ACA--ATGAAAAAAGATGGTGACGACCATCAA
1 A-ATTATG-AAAAGGATGGTAACGACCATC-A
22091037 AATTATGAAAAGG
1 AATTATGAAAAGG
22091050 GATAGCTTCA
Statistics
Matches: 130, Mismatches: 24, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
29 24 0.18
30 72 0.55
31 33 0.25
32 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (29 bp):
AATTATGAAAAGGATGGTAACGACCATCA
Found at i:22091044 original size:120 final size:119
Alignment explanation
Indices: 22090831--22091101 Score: 350
Period size: 120 Copynumber: 2.3 Consensus size: 119
22090821 GGATCGACGA
* * * *
22090831 ATGAAAAGGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTGATGACCATCAAATTTTTAAA
1 ATGAAAAAGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTAATGACCATCAAA-TATGAAA
** * * * *
22090896 AGGGATGGTGTCGGCTATCAAAATTATGAAAAGAGATGGCTTC-GACTATCAAATC
65 AAAGATGGTGACGACCATCAAAATTATGAAAAGAGATAGCTTCAG-CTATCAAATC
22090951 ATGAAAAAGGATAGCTTCGGCTATCAAATTATGTAAAA-GGATGGTAATGACCATCAACA-ATGA
1 ATGAAAAAGGATAGCTTCGGCTATC-AATTATG-AAAAGGGATGGTAATGACCATCAA-ATATGA
* *
22091014 AAAAAGATGGTGACGACCATCAAAATTATGAAAAGGGATAGCTTCAGCTATCGAATC
63 AAAAAGATGGTGACGACCATCAAAATTATGAAAAGAGATAGCTTCAGCTATCAAATC
*
22091071 ATGAAAAAGGATAGCTTTGGCTATCGAATTA
1 ATGAAAAAGGATAGCTTCGGCTATC-AATTA
22091102 CAGAAAGGAA
Statistics
Matches: 133, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
120 102 0.77
121 26 0.20
122 5 0.04
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (119 bp):
ATGAAAAAGGATAGCTTCGGCTATCAATTATGAAAAGGGATGGTAATGACCATCAAATATGAAAA
AAGATGGTGACGACCATCAAAATTATGAAAAGAGATAGCTTCAGCTATCAAATC
Found at i:22091077 original size:30 final size:30
Alignment explanation
Indices: 22091041--22091099 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
22091031 CATCAAAATT
*
22091041 ATGAAAAGGGATAGCTTCAGCTATCGAATC
1 ATGAAAAAGGATAGCTTCAGCTATCGAATC
**
22091071 ATGAAAAAGGATAGCTTTGGCTATCGAAT
1 ATGAAAAAGGATAGCTTCAGCTATCGAAT
22091100 TACAGAAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (30 bp):
ATGAAAAAGGATAGCTTCAGCTATCGAATC
Found at i:22094175 original size:29 final size:29
Alignment explanation
Indices: 22094143--22094212 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
22094133 TCGATGAATG
* * *
22094143 AAAGGGATAGCTTTTGCTATCGGATACGA
1 AAAGGGATAGCTTTCGCTATCGAATACAA
** *
22094172 AAAGAAATAGC-TTCGGTATCGAATACAA
1 AAAGGGATAGCTTTCGCTATCGAATACAA
22094200 AAAGGGATAGCTT
1 AAAGGGATAGCTT
22094213 CGACTATTGA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
28 22 0.69
29 10 0.31
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (29 bp):
AAAGGGATAGCTTTCGCTATCGAATACAA
Found at i:22094342 original size:91 final size:91
Alignment explanation
Indices: 22094242--22094407 Score: 210
Period size: 91 Copynumber: 1.8 Consensus size: 91
22094232 TGGATGGTGA
*** * *
22094242 CGACCATCAAATT-TCGAAAAGGGATGGT-AGCAATTGTCAAAATTATAAAAAGGGATGGCTTAA
1 CGACCATCAAATTAT-GAAAAGGGATGGTGA-CAACCATCAAAATTATAAAAAGGCATAGCTTAA
22094305 GCTATCGAATCATGAAAAATGATAGCTT
64 GCTATCGAATCATGAAAAATGATAGCTT
* * * * *
22094333 CGACTATCAAATTATGTAAAGGGATGGTGACGACCATCAAAATTATGAAAAGGCATAGCTTCAGC
1 CGACCATCAAATTATGAAAAGGGATGGTGACAACCATCAAAATTATAAAAAGGCATAGCTTAAGC
22094398 TATCGAATCA
66 TATCGAATCA
22094408 CAAAAGGGAA
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
91 61 0.97
92 2 0.03
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (91 bp):
CGACCATCAAATTATGAAAAGGGATGGTGACAACCATCAAAATTATAAAAAGGCATAGCTTAAGC
TATCGAATCATGAAAAATGATAGCTT
Found at i:22094421 original size:91 final size:91
Alignment explanation
Indices: 22094278--22094445 Score: 230
Period size: 91 Copynumber: 1.8 Consensus size: 91
22094268 GTAGCAATTG
* * * *
22094278 TCAAAATTATAAAAAGGGATGGCTTAAGCTATCGAATCATGAAAAATGATAGCTTCGACTATCAA
1 TCAAAATTATAAAAAGGCATAGCTTAAGCTATCGAATCATCAAAAAGGATAGCTTCGACTATCAA
*
22094343 ATTATGTAAAGGGATGGTGACGACCA
66 ATTATGGAAAGGGATGGTGACGACCA
* * * * *
22094369 TCAAAATTATGAAAAGGCATAGCTTCAGCTATCGAATCA-CAAAAGGGAATAGCTTTGGCTATCA
1 TCAAAATTATAAAAAGGCATAGCTTAAGCTATCGAATCATCAAAAAGG-ATAGCTTCGACTATCA
22094433 AATTATGGAAAGG
65 AATTATGGAAAGG
22094446 AATGTGTCAA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 5 0.08
91 61 0.92
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (91 bp):
TCAAAATTATAAAAAGGCATAGCTTAAGCTATCGAATCATCAAAAAGGATAGCTTCGACTATCAA
ATTATGGAAAGGGATGGTGACGACCA
Found at i:22095981 original size:27 final size:27
Alignment explanation
Indices: 22095943--22096004 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
22095933 ACACGAACGA
* * *
22095943 TTCCTTTTCATAGATGGCTATAAATGC
1 TTCCTTTTCATAGATCGCCATAAAGGC
22095970 TTCCTTTTCATAGATCGCCATAAAGGC
1 TTCCTTTTCATAGATCGCCATAAAGGC
22095997 TTCCTTTT
1 TTCCTTTT
22096005 TTTGGCATGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (27 bp):
TTCCTTTTCATAGATCGCCATAAAGGC
Found at i:22100009 original size:50 final size:50
Alignment explanation
Indices: 22099901--22100198 Score: 280
Period size: 50 Copynumber: 5.9 Consensus size: 50
22099891 ATTTGGGTAA
* ** *
22099901 AGAGATCCCATGTAAGACCATGTCTAAGACATGGCATTGACATCATTGAGGTTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC---GA-G--ATG
22099957 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
* * * * **
22100007 AGAAGCCCCATGTAAGACCATGTCTAGGACATGGCGTCAGCA-CTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC-GAGATG
* * * *
22100057 AGAGGTCCCACGTAAGACCATATCTGGGACATGGCATGGGCATCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
** * * *
22100107 AGAACTCCCATGTAATACCATATCTGGGATATGGCATTGGCAGTAC-A-A-G
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-T-CGAGATG
* ** *
22100156 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
22100199 GTTATTATCA
Statistics
Matches: 206, Mismatches: 32, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
48 1 0.00
49 37 0.18
50 121 0.59
51 3 0.01
52 2 0.01
53 2 0.01
56 40 0.19
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAGATG
Found at i:22103125 original size:51 final size:50
Alignment explanation
Indices: 22102960--22103145 Score: 176
Period size: 51 Copynumber: 3.7 Consensus size: 50
22102950 AGTGAAAGTG
* * *
22102960 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACCTAAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACC-AAATGGT
* * * * ** *
22103011 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTGCCGGATAGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATGGT
* * * * * *
22103060 TTCGATCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCACATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATGGT
* *
22103111 AATGGTCACATGTGTAGAACTATGTACAGGCTACT
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACT
22103146 GTGTGAACCA
Statistics
Matches: 104, Mismatches: 28, Indels: 6
0.75 0.20 0.04
Matches are distributed among these distances:
49 3 0.03
50 35 0.34
51 65 0.62
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAAATGGT
Found at i:22105546 original size:45 final size:45
Alignment explanation
Indices: 22105482--22105572 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
22105472 TTTTTGGGAC
22105482 ATGTTATCCCTGGTGATGATATTAAAGTTGAACCC-GCCAAGGTAA
1 ATGTTATCCCTGGTGATGATATTAAAGTTG-ACCCTGCCAAGGTAA
*
22105527 ATGTTATCTCTGGTGATGATATTAAAGTTGACCCTGCCAAGGTAA
1 ATGTTATCCCTGGTGATGATATTAAAGTTGACCCTGCCAAGGTAA
22105572 A
1 A
22105573 GGCAATTCTA
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 4 0.09
45 40 0.91
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (45 bp):
ATGTTATCCCTGGTGATGATATTAAAGTTGACCCTGCCAAGGTAA
Found at i:22108177 original size:37 final size:36
Alignment explanation
Indices: 22108133--22108239 Score: 153
Period size: 37 Copynumber: 2.9 Consensus size: 36
22108123 TATGTTACTA
22108133 TTCTGATATTTTGATTCGCATTGTAAGCATGCCATAGT
1 TTCTGATATTTTGATTCGCA-TGTAAGCATGCCATA-T
*
22108171 TT-TGATATTCTGATTCGCATGTTAAGCATGCCATAT
1 TTCTGATATTTTGATTCGCATG-TAAGCATGCCATAT
*
22108207 TTCTAATATTTTGATTCGCATGTAAAGCATGCC
1 TTCTGATATTTTGATTCGCATGT-AAGCATGCC
22108240 TACTGAAAAT
Statistics
Matches: 63, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
36 6 0.10
37 55 0.87
38 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (36 bp):
TTCTGATATTTTGATTCGCATGTAAGCATGCCATAT
Found at i:22111667 original size:14 final size:14
Alignment explanation
Indices: 22111644--22111679 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
22111634 TTTTATACCG
*
22111644 TTTTGATGTGGCAT
1 TTTTGTTGTGGCAT
22111658 TTTTGTTGTGGCAT
1 TTTTGTTGTGGCAT
22111672 TTTTGTTG
1 TTTTGTTG
22111680 GTAGTCTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.08, C:0.06, G:0.28, T:0.58
Consensus pattern (14 bp):
TTTTGTTGTGGCAT
Found at i:22113715 original size:20 final size:20
Alignment explanation
Indices: 22113667--22113715 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
22113657 TTGGATGAAT
22113667 TTGAGTAAATATGTGATTAAA
1 TTGA-TAAATATGTGATTAAA
* *
22113688 TTGTTAAATTTGT-ATTAAA
1 TTGATAAATATGTGATTAAA
22113707 TTAGATAAA
1 TT-GATAAA
22113716 GAAAAGAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 8 0.33
20 13 0.54
21 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (20 bp):
TTGATAAATATGTGATTAAA
Found at i:22118682 original size:16 final size:16
Alignment explanation
Indices: 22118661--22118692 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22118651 TGATTATATC
22118661 GAGCTCGATGGTACTA
1 GAGCTCGATGGTACTA
22118677 GAGCTCGATGGTACTA
1 GAGCTCGATGGTACTA
22118693 ATCCAAACTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (16 bp):
GAGCTCGATGGTACTA
Found at i:22119603 original size:43 final size:43
Alignment explanation
Indices: 22119556--22119660 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
22119546 TCCCAGATAT
* * * *
22119556 GGTCTTACATGTTATCACATATCGACACCACTGTCCCACACAG
1 GGTCTTACACGTAATCACATATCAACACCAATGTCCCACACAG
* ** * *
22119599 GGTCTTACACGTAATCCCATATCAATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCACATATCAACACCAATGTCCCACACAG
*
22119642 GGTCTTACACGAAATCACA
1 GGTCTTACACGTAATCACA
22119661 CCTTGGGTCC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAATCACATATCAACACCAATGTCCCACACAG
Found at i:22130500 original size:22 final size:23
Alignment explanation
Indices: 22130448--22130502 Score: 103
Period size: 23 Copynumber: 2.4 Consensus size: 23
22130438 AGGAGTTAGA
22130448 GAATTATAAATCTACTAAAATTC
1 GAATTATAAATCTACTAAAATTC
22130471 GAATTATAAATCTACTAAAATTC
1 GAATTATAAATCTACTAAAATTC
22130494 -AATTATAAA
1 GAATTATAAA
22130503 AATGTCAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 9 0.28
23 23 0.72
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.35
Consensus pattern (23 bp):
GAATTATAAATCTACTAAAATTC
Found at i:22158771 original size:50 final size:50
Alignment explanation
Indices: 22158646--22158840 Score: 187
Period size: 50 Copynumber: 3.9 Consensus size: 50
22158636 GATATTAACA
* * * **
22158646 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTT-TCCTGT-AT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATATCGG
* * * *
22158695 TGCCAATGTCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* ** ** *
22158745 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
* * * **
22158795 TGCCAACGCCATGTCCCAGATATGGTCTTACGTGGGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATA
22158841 ACCCCAATAA
Statistics
Matches: 120, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
48 3 0.03
49 36 0.30
50 81 0.68
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCGG
Found at i:22172349 original size:35 final size:36
Alignment explanation
Indices: 22172285--22172352 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
22172275 TATGGAAGAG
* ***
22172285 AATATATGGGTATGTTATTCATGTTATGTGACAGTA
1 AATATATGAGTATGTTATTCATACCATGTGACAGTA
22172321 AATATATGAGTATGTT-TTCATACCATGTGACA
1 AATATATGAGTATGTTATTCATACCATGTGACA
22172353 ATGATTATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 13 0.46
36 15 0.54
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (36 bp):
AATATATGAGTATGTTATTCATACCATGTGACAGTA
Found at i:22178159 original size:49 final size:49
Alignment explanation
Indices: 22177985--22178299 Score: 511
Period size: 47 Copynumber: 6.6 Consensus size: 49
22177975 CCCTTCGGGA
* * * * *
22177985 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22178032 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22178079 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22178126 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22178175 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22178224 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22178271 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
22178300 TATTCAAATA
Statistics
Matches: 253, Mismatches: 9, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
46 1 0.00
47 137 0.54
49 115 0.45
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22178182 original size:96 final size:95
Alignment explanation
Indices: 22177985--22178299 Score: 508
Period size: 96 Copynumber: 3.3 Consensus size: 95
22177975 CCCTTCGGGA
* * * * * * * *
22177985 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
22178049 CTTTCACATTCATCACATCGGCCATTAGGC
66 CTTTCACATTCATCACATCGGCCATTAGGC
22178079 CTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATA
1 CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATA
22178143 CACTTTCACATTCATCACATCGGCCATTAGGC
64 CACTTTCACATTCATCACATCGGCCATTAGGC
22178175 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22178240 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAGGC
22178271 CTTATCACATATATATACACTTTCACATT
1 CTTATCACA-ATATATACACTTTCACATT
22178300 TATTCAAATA
Statistics
Matches: 209, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
94 47 0.22
96 115 0.55
98 47 0.22
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (95 bp):
CTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22182338 original size:42 final size:41
Alignment explanation
Indices: 22182279--22182529 Score: 285
Period size: 42 Copynumber: 5.9 Consensus size: 41
22182269 GTTACACGTT
* * *
22182279 GGAATTAGCACTTAGCAACCACCTTTATATTCAAGGATACGG
1 GGAATCAGCACTTAGCAACC-CCTTTATAATCAAGAATACGG
*
22182321 GGAATCAGCACATAGCAACCCCTTTTATAATCAA-AGATACGG
1 GGAATCAGCACTTAGCAACCCC-TTTATAATCAAGA-ATACGG
**
22182363 GGAATCAGCAAATAGCAACCCCTTTTTTTATAATCAA-AGATACGG
1 GGAATCAGCACTTAGCAACCCC----TTTATAATCAAGA-ATACGG
* *
22182408 GGAATCAGTACTTAGCAACCCCTTTGATAATC-AGAATACGA
1 GGAATCAGCACTTAGCAACCCCTTT-ATAATCAAGAATACGG
22182449 GGAATCAGCACTTAGCAACCCCTTTGATAATCAAGAATACGG
1 GGAATCAGCACTTAGCAACCCCTTT-ATAATCAAGAATACGG
*
22182491 GAAATCAGCACTTAGCAACCCCTTT-TACATTCAAGAATA
1 GGAATCAGCACTTAGCAACCCCTTTATA-A-TCAAGAATA
22182530 TTCAGTGGAA
Statistics
Matches: 187, Mismatches: 12, Indels: 20
0.85 0.05 0.09
Matches are distributed among these distances:
40 2 0.01
41 43 0.23
42 103 0.55
45 39 0.21
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (41 bp):
GGAATCAGCACTTAGCAACCCCTTTATAATCAAGAATACGG
Found at i:22182540 original size:128 final size:127
Alignment explanation
Indices: 22182278--22182565 Score: 316
Period size: 128 Copynumber: 2.2 Consensus size: 127
22182268 AGTTACACGT
* * * *
22182278 TGGAATTAGCACTTAGCAACCACCTTTATATTCAAGGATACGGGGAATCAGCACATAGCAACCCC
1 TGGAATCAGCACTTAGCAACCACCTTTATAATCAAGAATACGAGGAATCAGCACATAGCAACCCC
* * *
22182343 TTTTATAATCAAAGATACGGGGAATCAGCAAATAGCAACCCCTTTTTTTATAATCAAAGATACG
66 TTTGATAATCAAAGATACGGGAAATCAGCAAATAGCAACCCC--TTTTTACAATCAAAGATACG
* * *
22182407 GGGAATCAGTACTTAGCAACC-CCTTTGATAATC-AGAATACGAGGAATCAGCACTTAGCAACCC
1 TGGAATCAGCACTTAGCAACCACCTTT-ATAATCAAGAATACGAGGAATCAGCACATAGCAACCC
** *
22182470 CTTTGATAATC-AAGAATACGGGAAATCAGCACTTAGCAACCCC-TTTTACATTC-AAGAATATT
65 CTTTGATAATCAAAG-ATACGGGAAATCAGCAAATAGCAACCCCTTTTTACAATCAAAG-ATA--
22182532 CAG
126 C-G
** * *
22182535 TGGAATCAGCACACAGTAACCACCGTTATAA
1 TGGAATCAGCACTTAGCAACCACCTTTATAA
22182566 CCATAGATAC
Statistics
Matches: 133, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
124 3 0.02
125 11 0.08
127 4 0.03
128 88 0.66
129 27 0.20
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.24
Consensus pattern (127 bp):
TGGAATCAGCACTTAGCAACCACCTTTATAATCAAGAATACGAGGAATCAGCACATAGCAACCCC
TTTGATAATCAAAGATACGGGAAATCAGCAAATAGCAACCCCTTTTTACAATCAAAGATACG
Found at i:22209795 original size:26 final size:26
Alignment explanation
Indices: 22209766--22209828 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
22209756 TTTAAACTAA
*
22209766 ACTTTTCAAAAGT-ATTTCTCAAAAGC
1 ACTTTTCAAAA-TCATTTCTCAAAAAC
* * *
22209792 ACTTTTCCACATCATTTTTCAAAAAC
1 ACTTTTCAAAATCATTTCTCAAAAAC
22209818 ACTTTTCAAAA
1 ACTTTTCAAAA
22209829 ACAATGAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
25 1 0.03
26 29 0.97
ACGTcount: A:0.38, C:0.22, G:0.03, T:0.37
Consensus pattern (26 bp):
ACTTTTCAAAATCATTTCTCAAAAAC
Found at i:22209823 original size:13 final size:13
Alignment explanation
Indices: 22209766--22209831 Score: 53
Period size: 13 Copynumber: 5.1 Consensus size: 13
22209756 TTTAAACTAA
**
22209766 ACTTTTCAAAAGT
1 ACTTTTCAAAAAC
*
22209779 A-TTTCTCAAAAGC
1 ACTTT-TCAAAAAC
* * *
22209792 ACTTTTCCACATC
1 ACTTTTCAAAAAC
*
22209805 ATTTTTCAAAAAC
1 ACTTTTCAAAAAC
22209818 ACTTTTCAAAAAC
1 ACTTTTCAAAAAC
22209831 A
1 A
22209832 ATGAAGAAGT
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
12 3 0.07
13 36 0.86
14 3 0.07
ACGTcount: A:0.39, C:0.23, G:0.03, T:0.35
Consensus pattern (13 bp):
ACTTTTCAAAAAC
Found at i:22218970 original size:51 final size:51
Alignment explanation
Indices: 22218836--22218972 Score: 161
Period size: 50 Copynumber: 2.7 Consensus size: 51
22218826 AGTGAAAGTG
** *
22218836 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATATGCACCGGAATGAT
* * *
22218887 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACTATATGCATC-GAATGGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATATGCACCGGAATGAT
* * * *
22218936 AATGGTCACATTTGTAGTACTACGTACAGACTACTAT
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTAT
22218973 GTGAACCGAA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
49 6 0.08
50 37 0.51
51 30 0.41
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTATATGCACCGGAATGAT
Found at i:22219033 original size:45 final size:45
Alignment explanation
Indices: 22218982--22219069 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
22218972 TGTGAACCGA
* * *
22218982 ACATCATTGATTAGTAAAGTGGCTGCTATGTGTTGATTCCACCAG
1 ACATCATTGATTAATAAAGTGGCTGCTATGTGCTGAATCCACCAG
* *
22219027 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
1 ACATCATTGATTAATAAAGTGGCTGCTATGTGCTGAATCCACC
22219070 GAGTATCTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAAGTGGCTGCTATGTGCTGAATCCACCAG
Found at i:22224589 original size:51 final size:51
Alignment explanation
Indices: 22224525--22224652 Score: 150
Period size: 51 Copynumber: 2.5 Consensus size: 51
22224515 TGGTCCCGTG
* *
22224525 TGTAGTACTATGTGCAGGCTACTATGCGTACCAAATAGT-TTCGATCACGTA
1 TGTAGTACTATGTGCAGGCTACTATGCGTACCAAATAGTAAT-GATCACATA
* * * * * * * *
22224576 TGTATTACTATGTGCAGACTACTACGTGTATCGAATAGTAATGGTCACATG
1 TGTAGTACTATGTGCAGGCTACTATGCGTACCAAATAGTAATGATCACATA
22224627 TGTAGTACTATGTGCAGGCTACTATG
1 TGTAGTACTATGTGCAGGCTACTATG
22224653 TGAACCGAAC
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
51 62 0.98
52 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (51 bp):
TGTAGTACTATGTGCAGGCTACTATGCGTACCAAATAGTAATGATCACATA
Found at i:22224747 original size:45 final size:45
Alignment explanation
Indices: 22224656--22224750 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 45
22224646 TACTATGTGA
* * * * *
22224656 ACCGAACATCATTGATTAGTAAAGTGGTTGCTATGTGTTGATTCC
1 ACCGGACATCATTGATTAATAAAGTGGTTGCTATGTGCTAAATCC
*
22224701 ACCGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTAAATCC
1 ACCGGACATCATTGATTAATAAAGTGGTTGCTATGTGCTAAATCC
22224746 ACCGG
1 ACCGG
22224751 GTATCTGTTA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (45 bp):
ACCGGACATCATTGATTAATAAAGTGGTTGCTATGTGCTAAATCC
Found at i:22251213 original size:35 final size:35
Alignment explanation
Indices: 22251168--22251241 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
22251158 AAAAGTATGG
* * *
22251168 ATTTGTTATCGATA-TGTTTTTTCAAGTATCGATAA
1 ATTTGGTATCGATACT-TTTTGTCAAGTATCAATAA
22251203 ATTTGGTATCGATACTTTTTGTCAAGTATCAATAA
1 ATTTGGTATCGATACTTTTTGTCAAGTATCAATAA
22251238 ATTT
1 ATTT
22251242 TGTTGAGTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
35 34 0.97
36 1 0.03
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (35 bp):
ATTTGGTATCGATACTTTTTGTCAAGTATCAATAA
Found at i:22251242 original size:20 final size:20
Alignment explanation
Indices: 22251219--22251256 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22251209 TATCGATACT
22251219 TTTTGTCAAGTATCAATAAA
1 TTTTGTCAAGTATCAATAAA
**
22251239 TTTTGTTGAGTATCAATA
1 TTTTGTCAAGTATCAATA
22251257 GGTTCACAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.08, G:0.13, T:0.45
Consensus pattern (20 bp):
TTTTGTCAAGTATCAATAAA
Found at i:22254211 original size:56 final size:56
Alignment explanation
Indices: 22254120--22254242 Score: 176
Period size: 55 Copynumber: 2.2 Consensus size: 56
22254110 GAGATTGGCG
* * *
22254120 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
22254177 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
22254232 CTGAGTGTGCG
1 CTAAGTGTGCG
22254243 GACTTAATAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 23 0.38
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:22254229 original size:27 final size:28
Alignment explanation
Indices: 22254120--22254242 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
22254110 GAGATTGGCG
* * * *
22254120 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
22254149 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
22254177 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
22254205 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
22254232 CTGAGTGTGCG
1 CTAAGTGTGCG
22254243 GACTTAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.28
28 48 0.55
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:22254253 original size:27 final size:27
Alignment explanation
Indices: 22254145--22254255 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
22254135 TAAATTGTAC
* * *
22254145 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
22254173 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
22254201 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
22254228 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
22254255 A
1 A
22254256 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:22256488 original size:41 final size:41
Alignment explanation
Indices: 22256438--22256619 Score: 213
Period size: 41 Copynumber: 4.4 Consensus size: 41
22256428 TTATTCCATG
* * *
22256438 AATTGCACATACGTACCCCTGTTTGTACTTCGGTACCCCTA
1 AATTACACATACGTGCCCCTGTTTGTACTTCGATACCCCTA
* * * *
22256479 AATTACACATATGTGCCCCTGTTTGTACTTCAATACCACTG
1 AATTACACATACGTGCCCCTGTTTGTACTTCGATACCCCTA
* * * *
22256520 AATTTCATATATGTGCCCCTATTTGTACTTCGATACCCCTA
1 AATTACACATACGTGCCCCTGTTTGTACTTCGATACCCCTA
* * *
22256561 AATTGCACATACGTGCCCCTGTTTGTACTTTGATACCCCTG
1 AATTACACATACGTGCCCCTGTTTGTACTTCGATACCCCTA
*
22256602 AA-TAGCACATACATGCCC
1 AATTA-CACATACGTGCCC
22256620 TATTTACACT
Statistics
Matches: 119, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
40 1 0.01
41 118 0.99
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (41 bp):
AATTACACATACGTGCCCCTGTTTGTACTTCGATACCCCTA
Found at i:22256560 original size:20 final size:20
Alignment explanation
Indices: 22256535--22256600 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
22256525 CATATATGTG
22256535 CCCCTATTTGTACTTCGATA
1 CCCCTATTTGTACTTCGATA
* * * *
22256555 CCCCTAAATTGCACATACG-TG
1 CCCCT-ATTTGTAC-TTCGATA
* *
22256576 CCCCTGTTTGTACTTTGATA
1 CCCCTATTTGTACTTCGATA
22256596 CCCCT
1 CCCCT
22256601 GAATAGCACA
Statistics
Matches: 33, Mismatches: 10, Indels: 6
0.67 0.20 0.12
Matches are distributed among these distances:
19 2 0.06
20 16 0.48
21 12 0.36
22 3 0.09
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (20 bp):
CCCCTATTTGTACTTCGATA
Found at i:22256619 original size:82 final size:82
Alignment explanation
Indices: 22256436--22256624 Score: 254
Period size: 82 Copynumber: 2.3 Consensus size: 82
22256426 AATTATTCCA
* * * *
22256436 TGAATTGCACATACGTACCCCTGTTTGTACTTCGGTACCCCTAAATTACACATATGTGCCCCTGT
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCTAAATTACACATACGTGCCCCTGT
22256501 TTGTACTTCAATACCAC
66 TTGTACTTCAATACCAC
* * * *
22256518 TGAATTTCATATATGTGCCCCTATTTGTACTTCGATACCCCTAAATTGCACATACGTGCCCCTGT
1 TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCTAAATTACACATACGTGCCCCTGT
** *
22256583 TTGTACTTTGATACCCC
66 TTGTACTTCAATACCAC
* *
22256600 TGAATAGCACATACATG-CCCTATTT
1 TGAATTGCACATACGTGCCCCTATTT
22256625 ACACTCCGGT
Statistics
Matches: 91, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
81 8 0.09
82 83 0.91
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.34
Consensus pattern (82 bp):
TGAATTGCACATACGTGCCCCTATTTGTACTTCGATACCCCTAAATTACACATACGTGCCCCTGT
TTGTACTTCAATACCAC
Found at i:22260372 original size:29 final size:30
Alignment explanation
Indices: 22260324--22260382 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
22260314 GGATTCTATC
22260324 AAATAAAAATTTCATATATAAAATTACACA
1 AAATAAAAATTTCATATATAAAATTACACA
* *
22260354 AAATCAAAATTT-ATGTATAAAATTACACA
1 AAATAAAAATTTCATATATAAAATTACACA
22260383 TGGCACCATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (30 bp):
AAATAAAAATTTCATATATAAAATTACACA
Found at i:22260590 original size:28 final size:28
Alignment explanation
Indices: 22260550--22260606 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
22260540 CTCCCTTAAG
*
22260550 AATTAAAGAGCGCAGTTGAGTTCCTCAA
1 AATTAAAGAGCGCAGTTGAGTACCTCAA
22260578 AATTAAAGAGCGCAGTTGAGTACCTCAA
1 AATTAAAGAGCGCAGTTGAGTACCTCAA
22260606 A
1 A
22260607 TTACTCTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.21, T:0.23
Consensus pattern (28 bp):
AATTAAAGAGCGCAGTTGAGTACCTCAA
Found at i:22262682 original size:4 final size:4
Alignment explanation
Indices: 22262673--22262697 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
22262663 TGTTTTATCT
22262673 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
22262698 GGGTTCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:22272122 original size:56 final size:50
Alignment explanation
Indices: 22271897--22272143 Score: 217
Period size: 50 Copynumber: 4.8 Consensus size: 50
22271887 GATAATAACA
* ** * * * *
22271897 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * ** ** * * *
22271946 TGCCAATGCCATATCCCAGATATGACCTTACATGGGAGTTTTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
* * * *
22271996 TGCCCATGCCATGTCCCTGACATTGTCTTACAGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
**
22272046 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT---CTC-A-G
* *
22272101 ATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22272144 TTACCCAAAT
Statistics
Matches: 157, Mismatches: 34, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
49 38 0.24
50 76 0.48
53 3 0.02
54 1 0.01
55 1 0.01
56 38 0.24
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
Found at i:22278614 original size:49 final size:49
Alignment explanation
Indices: 22278554--22278745 Score: 181
Period size: 50 Copynumber: 3.8 Consensus size: 49
22278544 GATAATAACA
* * * *
22278554 TGCCAAAGCCATGTCCTAGACATGGTCTTACATGGGATGTT-TCTTGTAC-
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CG
* * *
22278603 TGCCAATGCCATATCCCAGATATGGCCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATC-G
* **
22278653 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAACCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCAT-A--TC---G
*
22278708 ATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
22278746 TCTCTTTACC
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
48 4 0.03
49 36 0.31
50 39 0.33
51 1 0.01
53 2 0.02
55 1 0.01
56 35 0.30
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCG
Found at i:22281448 original size:6 final size:6
Alignment explanation
Indices: 22281436--22281465 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
22281426 ATTGAAAACA
*
22281436 AAAAAT AACAAT AAAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
22281466 CCAAAATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAAAT
Found at i:22282099 original size:50 final size:50
Alignment explanation
Indices: 22282045--22282408 Score: 158
Period size: 50 Copynumber: 7.3 Consensus size: 50
22282035 GATTCGCCAT
*
22282045 TGTGGCTTTAATCTTTTTAACTGCAATGTCGAGGAAACAGGATTC-CTGGA
1 TGTGGCTTTAATCTTTTTAACTGCAATGTCAAGGAAACAGGATTCGCT-GA
* * ** * * * ** *
22282095 TGTGGCTTTAGTCTGTTCCACTGCACTGCCAGGGAAGTAGGATTCGCTGC
1 TGTGGCTTTAATCTTTTTAACTGCAATGTCAAGGAAACAGGATTCGCTGA
* * ** * * *
22282145 TGTAGCTTTAATCTTTTTAACCGCAATGTCAAGGAGGCAAGATTCACCGA
1 TGTGGCTTTAATCTTTTTAACTGCAATGTCAAGGAAACAGGATTCGCTGA
* * ** ** * ** **** * *
22282195 TGTGGATTTAATCTGTTCCACTGCACCGCCTGGGTGGTAAGATTCGCTGC
1 TGTGGCTTTAATCTTTTTAACTGCAATGTCAAGGAAACAGGATTCGCTGA
** ** * * *
22282245 TGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGA
1 TGTGGCTTTAATCTTTTTAACTGCAATGTCAAGGAAACAGGATTCGCTGA
** * ** *** * * *
22282295 TGTGGCTTTAAT-TTATTCCACTGC-ATCGCCTGGGAGGTAAGATTTGCTGT
1 TGTGGCTTTAATCTT-TTTAACTGCAAT-GTCAAGGAAACAGGATTCGCTGA
* ** * * * *
22282345 TGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGT
1 TGTGGCTTTAATCTTTTTAACTGCAATGTCAAGGAAACAGGATTCGCTGA
22282395 TGTGGCTTTAATCT
1 TGTGGCTTTAATCT
22282409 GTTCCACTAC
Statistics
Matches: 235, Mismatches: 74, Indels: 10
0.74 0.23 0.03
Matches are distributed among these distances:
49 4 0.02
50 225 0.96
51 6 0.03
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (50 bp):
TGTGGCTTTAATCTTTTTAACTGCAATGTCAAGGAAACAGGATTCGCTGA
Found at i:22282210 original size:100 final size:100
Alignment explanation
Indices: 22282031--22282437 Score: 503
Period size: 100 Copynumber: 4.1 Consensus size: 100
22282021 CCTTTGGAAA
*** * * * *
22282031 GTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCGAGGAAACAGGATTC-CTGGA
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCAC-CGA
* * *
22282095 TGTGGCTTTAGTCTGTTCCACTGCACTGCCAGGGAA
65 TGTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAG
* * * *
22282131 GTAGGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAAGGAGGCAAGATTCACCGAT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGAT
* * *
22282196 GTGGATTTAATCTGTTCCACTGCACCGCCTGGGTG
66 GTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAG
* * *
22282231 GTAAGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGAT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGAT
* *
22282296 GTGGCTTTAATTTATTCCACTGCA-TCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACT-GCCTGGGAG
* * * * *
22282331 GTAAGATTTGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCGCCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGAT
* * *
22282396 GTGGCTTTAATCTGTTCCACTACACCGCTTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAG
*
22282431 ATAAGAT
1 GTAAGAT
22282438 CTGTAATTCT
Statistics
Matches: 263, Mismatches: 41, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
100 262 1.00
101 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.33
Consensus pattern (100 bp):
GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGAT
GTGGCTTTAATCTGTTCCACTGCACTGCCTGGGAG
Found at i:22282437 original size:50 final size:49
Alignment explanation
Indices: 22282183--22282437 Score: 154
Period size: 50 Copynumber: 5.1 Consensus size: 49
22282173 TCAAGGAGGC
* * * * *
22282183 AAGATTCACCGATGTGGATTTAATCTGTTCCACTGCACCGCCTGGGTGGT
1 AAGATTCGCCGATGTGGCTTTAATCTGTTCCACTGCAACGCTTGGG-GAT
* * * ** * *
22282233 AAGATTCGCTGCTGTGGCTTTAATCTTTTTAACTGCAATG-TCGGGGAAGT
1 AAGATTCGCCGATGTGGCTTTAATCTGTTCCACTGCAACGCTTGGGG-A-T
* * * * * *
22282283 AAGATTCACCGATGTGGCTTTAATTTATTCCACTGCATCGCCTGGGAGGT
1 AAGATTCGCCGATGTGGCTTTAATCTGTTCCACTGCAACGCTTGGG-GAT
* * * * * ** * * *
22282333 AAGATTTGCTGTTGTAGCTTTAATCTTTTTAACTGCAATG-TCGGGGAAGC
1 AAGATTCGCCGATGTGGCTTTAATCTGTTCCACTGCAACGCTTGGGG-A-T
* * *
22282383 AAGATTCGCCGTTGTGGCTTTAATCTGTTCCACTACACCGCTTGGGAGAT
1 AAGATTCGCCGATGTGGCTTTAATCTGTTCCACTGCAACGCTTGGG-GAT
22282433 AAGAT
1 AAGAT
22282438 CTGTAATTCT
Statistics
Matches: 147, Mismatches: 50, Indels: 16
0.69 0.23 0.08
Matches are distributed among these distances:
48 2 0.01
49 6 0.04
50 129 0.88
51 8 0.05
52 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (49 bp):
AAGATTCGCCGATGTGGCTTTAATCTGTTCCACTGCAACGCTTGGGGAT
Found at i:22284087 original size:6 final size:7
Alignment explanation
Indices: 22284064--22284101 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
22284054 CTTTTTACTC
22284064 TTTCATT
1 TTTCATT
22284071 TTCTCATT
1 TT-TCATT
22284079 TTTCATT
1 TTTCATT
22284086 TTTCA-T
1 TTTCATT
22284092 TTTCATT
1 TTTCATT
22284099 TTT
1 TTT
22284102 TTGACTCAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTCATT
Found at i:22291882 original size:45 final size:45
Alignment explanation
Indices: 22291833--22292101 Score: 414
Period size: 45 Copynumber: 6.0 Consensus size: 45
22291823 GAGTAGGTTG
22291833 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
* * *
22291878 AAGATAGCAGATTTTTTCTTCCTATATTGGCAGCGAAGTAGATCA
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
* *
22291923 AAGATAGCATG-TCTTATCTTCCTGTATTGGTAGCGAAGTAGATCA
1 AAGATAGCA-GATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
* * * *
22291968 AAGATAGTAGGTCTTGTCTTCCGGTATTGGCAGCGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
* *
22292013 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAACGAAGTAGATCG
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
*
22292058 AAGATAGCAGATCTTGTTTTCCTGTATTGGCAGCGAAGTAGATC
1 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATC
22292102 GAATAAACCA
Statistics
Matches: 204, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
44 1 0.00
45 202 0.99
46 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (45 bp):
AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCA
Found at i:22292471 original size:44 final size:44
Alignment explanation
Indices: 22292296--22292512 Score: 159
Period size: 44 Copynumber: 4.8 Consensus size: 44
22292286 CAGATCATAT
* * *
22292296 CAAACTTTATCTCCCTGAAGTTGCAGTGAAGCAGGTTAAAAGTAAA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTT-GAAGT-AA
* * * * *
22292342 CCAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAG-ACA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTA-A
* * ** *
22292386 GGCTACAAGTCTTATCTCTCTGAAGTTGCAGTACAGAAGGTTGAAGTAA
1 --C-A-AA-CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTAA
* *
22292435 CAAACCTTATCCCCCTGAAGTTGCAGTGGGGCAGGTTGAA-TATA
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTA-A
** * * *
22292479 CAAGTCTTATCTCACTGAAATTACAGTGGAGCAG
1 CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
22292513 ACTAAAGCTG
Statistics
Matches: 133, Mismatches: 30, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
43 3 0.02
44 58 0.44
45 5 0.04
46 32 0.24
47 1 0.01
48 2 0.02
49 31 0.23
50 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (44 bp):
CAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTAA
Found at i:22292727 original size:45 final size:45
Alignment explanation
Indices: 22292677--22292779 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
22292667 TATCTCTTTT
* * *
22292677 TGAAGTTGCAGTGGAGCAGACTGACTA-AATCAAACTTTATCTCCC
1 TGAAGTTGCAGTGGAGCAAACTGAATATAA-CAAACCTTATCTCCC
*
22292722 TGAAGTTGCAGTGGAGCAAACTGAATATAACCAACCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAAACTGAATATAACAAACCTTATCTCCC
*
22292767 TAAAGTTGCAGTG
1 TGAAGTTGCAGTG
22292780 AAGCCGGTTG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
45 50 0.96
46 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.26
Consensus pattern (45 bp):
TGAAGTTGCAGTGGAGCAAACTGAATATAACAAACCTTATCTCCC
Found at i:22293642 original size:44 final size:44
Alignment explanation
Indices: 22293574--22293838 Score: 162
Period size: 45 Copynumber: 6.0 Consensus size: 44
22293564 GTTTTAATCC
* * * **
22293574 GCTCTACTGCAACTTTAGGGAGATAGGATTAGTAGCTTCAATTT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAACCT
* *
22293618 GCTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAACCT
* * * **
22293662 GTTCCACTGCAACTTCAGGGAGATAAGGTT-GTTTATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTAG--TAGCTTCAACCT
* * * * *
22293707 GCTACATTGCAACTTCAAGGAGATAAGACTT-GTTATG-GT-AGATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGA-TTAG-TA-GCTTCA-ACCT
* * * * * * **
22293752 GCTCTACTGTAACTTCAGAGAGATAAAATCTACTATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGAT-TAGTAGCTTCAACCT
* * * *
22293797 ACTCTACTGCAACCTCAGTGAGATAAGACTT-GTAGCTTCAAC
1 GCTCCACTGCAACTTCAGGGAGATAAGA-TTAGTAGCTTCAAC
22293839 TTGTTTTACT
Statistics
Matches: 172, Mismatches: 39, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
43 1 0.01
44 74 0.43
45 92 0.53
46 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTAGTAGCTTCAACCT
Found at i:22293718 original size:45 final size:44
Alignment explanation
Indices: 22293579--22293734 Score: 168
Period size: 44 Copynumber: 3.5 Consensus size: 44
22293569 AATCCGCTCT
* * * * ** *
22293579 ACTGCAACTTTAGGGAGATAGGATTAGTAGCTTCAATTTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGCTAC
* *
22293623 ACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGTTCC
1 ACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGCTAC
* * **
22293667 ACTGCAACTTCAGGGAGATAAGGTTGTTTATCTTCAGTCTGCTAC
1 ACTGCAACTTCAGGGAGATAAGATTG-GTATCTTCAACCTGCTAC
* *
22293712 ATTGCAACTTCAAGGAGATAAGA
1 ACTGCAACTTCAGGGAGATAAGA
22293735 CTTGTTATGG
Statistics
Matches: 95, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
44 62 0.65
45 33 0.35
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGCTAC
Found at i:22294069 original size:81 final size:81
Alignment explanation
Indices: 22293978--22294130 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
22293968 AAGATTCGCT
* *
22293978 ATCTTCGATCTACTCCACTACTGCTTAGAGAGACAGGATCTGCAATCTTCAACCTACTCCACTGC
1 ATCTTCGATCTACTCCACTACTACTTAGAGAGACAGGATCTACAATCTTCAACCTACTCCACTGC
22294043 TGCTCAGGGATTCACC
66 TGCTCAGGGATTCACC
* * * * * * * *
22294059 ATCTTTGATCTGCTTCATTACTACTTTGGGAGACAGGATCTACAATCTTTAACCTGCTCCACTGC
1 ATCTTCGATCTACTCCACTACTACTTAGAGAGACAGGATCTACAATCTTCAACCTACTCCACTGC
22294124 TGCTCAG
66 TGCTCAG
22294131 AGAGATAAGG
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (81 bp):
ATCTTCGATCTACTCCACTACTACTTAGAGAGACAGGATCTACAATCTTCAACCTACTCCACTGC
TGCTCAGGGATTCACC
Found at i:22294282 original size:45 final size:45
Alignment explanation
Indices: 22294147--22294734 Score: 451
Period size: 45 Copynumber: 13.2 Consensus size: 45
22294137 AAGGCTGGTG
* * **
22294147 TCTTCGATCTACTTCGCTGCCAATATAGGAAGTTAAGATCTGCTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* * * * *** * * * *
22294192 TTTTCAACCTACTCCACTGCTGCT-CAGGGAGATAAG-GCTGGTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* * * *
22294235 TCTTCGATCTACTTCACTACCAGTTCAGGAAGACAAGATCTGTTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
**
22294280 TCTTCGATCTACTTTGCTGCCAATACAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* ** * *
22294325 TCTTTGATCTACTTTGCTGCCAATACAGGAAGAGAAGATCTACTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* *
22294370 TCCTT-GATCTACTTCACTGCCAATACAAGAAGACAAGATCTGTTA
1 T-CTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* * * * * *** * ** * *
22294415 TTTTCAACCTACTCCACTACTGCT-CAGGGAGGTAAGGT-TGGTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* * *
22294458 TCTTCGATCTACTTCGCTGCCAATACAGGAAGAC--GATCTGTTG
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* * * * *** * * *
22294501 TTTTCAACCTACTCCACTGCTGCT-CAGTG-AGATAAG-GCTGGTA
1 TCTTCGATCTACTTCACTGCCAATACAG-GAAGACAAGATCTGCTA
* * * *
22294544 TCTTCGATCTGCTTCACTGCCAGTACAGGAAGACAAGAACTACTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* *
22294589 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
** * *
22294634 TCTTCGATCTACTTCGTTGCCAATACAGGAAGATAAGATCTACTA
1 TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* * *
22294679 TCCTT-GATCTACTTCGCTGCCAATACAGGAAGACAAAATCTGTTA
1 T-CTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
* *
22294724 TTTTCAATCTA
1 TCTTCGATCTA
22294735 TTCCACTACA
Statistics
Matches: 419, Mismatches: 110, Indels: 28
0.75 0.20 0.05
Matches are distributed among these distances:
42 8 0.02
43 81 0.19
44 48 0.11
45 276 0.66
46 6 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
TCTTCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTA
Found at i:22294292 original size:88 final size:88
Alignment explanation
Indices: 22293977--22294284 Score: 251
Period size: 88 Copynumber: 3.6 Consensus size: 88
22293967 CAAGATTCGC
* *** * *
22293977 TATCTTCGATCTACTCCACTACTGCT-TA-GAGAGACAGGATCTGCAATCTTCAACCTACTCCAC
1 TATCTTCGATCTACTTCACTACCAATATAGGA-AGACAAGATCTGCTATCTTCAACCTACTCCAC
*
22294040 TGCTGCTCAG-G-GATTCA--C---
65 TGCTGCTCAGAGAGA-TAAGGCTGG
* * * * * * * * * * * * *
22294058 CATCTTTGATCTGCTTCATTACTACT-TTGGGAGACAGGATCTACAATCTTTAACCTGCTCCACT
1 TATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACT
22294122 GCTGCTCAGAGAGATAAGGCTGG
66 GCTGCTCAGAGAGATAAGGCTGG
* * * ** *
22294145 TGTCTTCGATCTACTTCGCTGCCAATATAGGAAGTTAAGATCTGCTATTTTCAACCTACTCCACT
1 TATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACT
*
22294210 GCTGCTCAGGGAGATAAGGCTGG
66 GCTGCTCAGAGAGATAAGGCTGG
* *
22294233 TATCTTCGATCTACTTCACTACCAGT-TCAGGAAGACAAGATCTGTTATCTTC
1 TATCTTCGATCTACTTCACTACCAATAT-AGGAAGACAAGATCTGCTATCTTC
22294285 GATCTACTTT
Statistics
Matches: 177, Mismatches: 40, Indels: 13
0.77 0.17 0.06
Matches are distributed among these distances:
81 60 0.34
82 4 0.02
83 2 0.01
84 1 0.01
87 18 0.10
88 92 0.52
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (88 bp):
TATCTTCGATCTACTTCACTACCAATATAGGAAGACAAGATCTGCTATCTTCAACCTACTCCACT
GCTGCTCAGAGAGATAAGGCTGG
Found at i:22294524 original size:86 final size:87
Alignment explanation
Indices: 22294375--22294578 Score: 311
Period size: 86 Copynumber: 2.3 Consensus size: 87
22294365 TACTATCCTT
*
22294375 GATCTACTTCACTGCCAATACAAGAAGACAAGATCTGTTATTTTCAACCTACTCCACTACTGCTC
1 GATCTACTTCACTGCCAATACAGGAAGAC-AGATCTGTTATTTTCAACCTACTCCACTACTGCTC
* *
22294440 AGGGAGGTAAGGTTGGTATCTTC
65 AGGGAGATAAGGCTGGTATCTTC
* * *
22294463 GATCTACTTCGCTGCCAATACAGGAAGAC-GATCTGTTGTTTTCAACCTACTCCACTGCTGCTCA
1 GATCTACTTCACTGCCAATACAGGAAGACAGATCTGTTATTTTCAACCTACTCCACTACTGCTCA
*
22294527 GTGAGATAAGGCTGGTATCTTC
66 GGGAGATAAGGCTGGTATCTTC
* *
22294549 GATCTGCTTCACTGCCAGTACAGGAAGACA
1 GATCTACTTCACTGCCAATACAGGAAGACA
22294579 AGAACTACTA
Statistics
Matches: 105, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
86 78 0.74
88 27 0.26
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (87 bp):
GATCTACTTCACTGCCAATACAGGAAGACAGATCTGTTATTTTCAACCTACTCCACTACTGCTCA
GGGAGATAAGGCTGGTATCTTC
Found at i:22294541 original size:309 final size:310
Alignment explanation
Indices: 22294109--22294743 Score: 1002
Period size: 309 Copynumber: 2.0 Consensus size: 310
22294099 TACAATCTTT
* * * *
22294109 AACCTGCTCCACTGCTGCTCAGAGAGATAAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATATA
1 AACCTACTCCACTACTGCTCAGAGAGATAAGGCTGGTATCTTCGATCTACTTCGCTGCCAATACA
22294174 GGAAGTTAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTATCTT
66 GGAAG-TAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTATCTT
* * ** *
22294239 CGATCTACTTCACTACCAGTTCAGGAAGACAAGATCTGTTATCTTCGATCTACTTTGCTGCCAAT
130 CGATCTACTTCACTACCAGTACAGGAAGACAAGAACTACTATCTTCGATCTACTTCGCTGCCAAT
* *
22294304 ACAGGAAGACAAGATCTGCTATCTTTGATCTACTTTGCTGCCAATACAGGAAGAGAAGATCTACT
195 ACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGAGAAGATCTACT
*
22294369 ATCCTTGATCTACTTCACTGCCAATACAAGAAGACAAGATCTGTTATTTTC
260 ATCCTTGATCTACTTCACTGCCAATACAAGAAGACAAAATCTGTTATTTTC
* * *
22294420 AACCTACTCCACTACTGCTCAGGGAGGTAAGGTTGGTATCTTCGATCTACTTCGCTGCCAATACA
1 AACCTACTCCACTACTGCTCAGAGAGATAAGGCTGGTATCTTCGATCTACTTCGCTGCCAATACA
* * * *
22294485 GGAAG-ACGATCTGTTGTTTTCAACCTACTCCACTGCTGCTCAGTGAGATAAGGCTGGTATCTTC
66 GGAAGTAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTATCTTC
* * *
22294549 GATCTGCTTCACTGCCAGTACAGGAAGACAAGAACTACTATCTTTGATCTACTTCGCTGCCAATA
131 GATCTACTTCACTACCAGTACAGGAAGACAAGAACTACTATCTTCGATCTACTTCGCTGCCAATA
* *
22294614 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGTTGCCAATACAGGAAGATAAGATCTACTA
196 CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGAGAAGATCTACTA
* *
22294679 TCCTTGATCTACTTCGCTGCCAATACAGGAAGACAAAATCTGTTATTTTC
261 TCCTTGATCTACTTCACTGCCAATACAAGAAGACAAAATCTGTTATTTTC
* *
22294729 AATCTATTCCACTAC
1 AACCTACTCCACTAC
22294744 AACTTCAGTG
Statistics
Matches: 296, Mismatches: 28, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
309 233 0.79
311 63 0.21
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (310 bp):
AACCTACTCCACTACTGCTCAGAGAGATAAGGCTGGTATCTTCGATCTACTTCGCTGCCAATACA
GGAAGTAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCTGGTATCTTC
GATCTACTTCACTACCAGTACAGGAAGACAAGAACTACTATCTTCGATCTACTTCGCTGCCAATA
CAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGAAGAGAAGATCTACTA
TCCTTGATCTACTTCACTGCCAATACAAGAAGACAAAATCTGTTATTTTC
Found at i:22302790 original size:50 final size:50
Alignment explanation
Indices: 22302666--22302962 Score: 249
Period size: 50 Copynumber: 5.8 Consensus size: 50
22302656 GAATATAACA
* * * * ** * * * *
22302666 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATATG
* * * * **
22302715 TGCAAATGCCATATCCCAGATATGGTCTTACATGAAAGTTCTCATATATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATATG
* * *
22302765 TGCCAATGCCATGTCCCAAACATGGTCTTACGA-GGGACCTCTCATCT-TGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGAGACCTCTCATATAT-G
* * * * **
22302815 TGCCAACGCCATGTCCCAGACATAGTCTTACATGAGACCTCTTATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATATG
* *
22302865 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCAT-A--T--ATG
*
22302920 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCT
22302963 TTATCCAAAT
Statistics
Matches: 201, Mismatches: 36, Indels: 15
0.80 0.14 0.06
Matches are distributed among these distances:
49 37 0.18
50 120 0.60
51 1 0.00
53 1 0.00
55 1 0.00
56 41 0.20
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATATG
Found at i:22302843 original size:100 final size:102
Alignment explanation
Indices: 22302722--22302954 Score: 274
Period size: 100 Copynumber: 2.3 Consensus size: 102
22302712 TACTGCAAAT
* * ** * *
22302722 GCCATATCCCAGATATGGTCTTACATGAAAGTTCTCATATATGTGCCAATGCCATGTCCCAAACA
1 GCCATGTCCCAGACATGGTCTTACATGAAACCTCTCATATAGGTGCCAACGCCATGTCCCAAACA
*
22302787 TGGTCTTACGA-GGGACCTCTC-ATCT-TGGTGCCAAC
66 TGGTCTTAC-ATGGGACCTCTCAATCTATGATGCCAAC
* * * * * *
22302822 GCCATGTCCCAGACATAGTCTTACATGAGACCTCTTATCTCGGTGCCAACGCCATGTCCCAGACA
1 GCCATGTCCCAGACATGGTCTTACATGAAACCTCTCATATAGGTGCCAACGCCATGTCCCAAACA
*
22302887 TGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAAT
66 TGGTCTTACATGGGACCTCTC--AATCT--ATGATGCCAAC
22302928 GCCATGTCCCAGACATGGTCTTACATG
1 GCCATGTCCCAGACATGGTCTTACATG
22302955 GGACCTCTTT
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
99 1 0.01
100 72 0.65
103 4 0.04
106 34 0.31
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (102 bp):
GCCATGTCCCAGACATGGTCTTACATGAAACCTCTCATATAGGTGCCAACGCCATGTCCCAAACA
TGGTCTTACATGGGACCTCTCAATCTATGATGCCAAC
Found at i:22302941 original size:56 final size:52
Alignment explanation
Indices: 22302764--22302967 Score: 265
Period size: 50 Copynumber: 3.9 Consensus size: 52
22302754 TCTCATATAT
* *
22302764 GTGCCAATGCCATGTCCCAAACATGGTCTTACGA-GGGACCTCTC-ATCT-TG
1 GTGCCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCTATCTCTG
* *
22302814 GTGCCAACGCCATGTCCCAGACATAGTCTTACATGAGACCTCT-TATCTC-G
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTATCTCTG
22302864 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-T-ATCTC--TG
* * *
22302920 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTTATC
1 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTATC
22302968 CAAATGTTAT
Statistics
Matches: 136, Mismatches: 9, Indels: 14
0.86 0.06 0.09
Matches are distributed among these distances:
49 1 0.01
50 83 0.61
52 1 0.01
53 5 0.04
54 3 0.02
55 1 0.01
56 42 0.31
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (52 bp):
GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTATCTCTG
Found at i:22304502 original size:101 final size:101
Alignment explanation
Indices: 22304327--22304525 Score: 398
Period size: 101 Copynumber: 2.0 Consensus size: 101
22304317 TTTGAAAAAG
22304327 AAAGAAAGGCATATTTCACATGAATCGAGAAAAGAATTACGTCCCGTAAGTTAGGACATAATGTC
1 AAAGAAAGGCATATTTCACATGAATCGAGAAAAGAATTACGTCCCGTAAGTTAGGACATAATGTC
22304392 TTGAATTCTCGATGCACAAATGAATGCCAAAAATTT
66 TTGAATTCTCGATGCACAAATGAATGCCAAAAATTT
22304428 AAAGAAAGGCATATTTCACATGAATCGAGAAAAGAATTACGTCCCGTAAGTTAGGACATAATGTC
1 AAAGAAAGGCATATTTCACATGAATCGAGAAAAGAATTACGTCCCGTAAGTTAGGACATAATGTC
22304493 TTGAATTCTCGATGCACAAATGAATGCCAAAAA
66 TTGAATTCTCGATGCACAAATGAATGCCAAAAA
22304526 ATTACTTATT
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 98 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (101 bp):
AAAGAAAGGCATATTTCACATGAATCGAGAAAAGAATTACGTCCCGTAAGTTAGGACATAATGTC
TTGAATTCTCGATGCACAAATGAATGCCAAAAATTT
Found at i:22305123 original size:41 final size:38
Alignment explanation
Indices: 22305048--22305125 Score: 111
Period size: 41 Copynumber: 2.0 Consensus size: 38
22305038 AAGAAAATAA
*
22305048 ATAAAATTATAAAAATGTAAATATATATATGTATATAC
1 ATAAAATTATAAAAATGAAAATATATATATGTATATAC
*
22305086 ATAAAATTATAAAAATATGAAAAATATATGTATGTATATA
1 ATAAAATTAT-AAAA-ATG-AAAATATATATATGTATATA
22305126 TATTTAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
38 10 0.29
39 4 0.11
40 3 0.09
41 18 0.51
ACGTcount: A:0.56, C:0.01, G:0.06, T:0.36
Consensus pattern (38 bp):
ATAAAATTATAAAAATGAAAATATATATATGTATATAC
Found at i:22311980 original size:21 final size:21
Alignment explanation
Indices: 22311936--22311980 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
22311926 TCAGCACATT
**
22311936 CAGATGCATCCACAACAGGGC
1 CAGATGCATCCACAACAGACC
*
22311957 CAGATGCATCCACACCAGACC
1 CAGATGCATCCACAACAGACC
22311978 CAG
1 CAG
22311981 GCACAGCCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.38, G:0.20, T:0.09
Consensus pattern (21 bp):
CAGATGCATCCACAACAGACC
Found at i:22316296 original size:5 final size:5
Alignment explanation
Indices: 22316286--22316317 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
22316276 TATTACTAGG
22316286 TTATT TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTATT TT
22316318 TGCTTCTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:22318263 original size:18 final size:18
Alignment explanation
Indices: 22318219--22318263 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
22318209 CAAGATGGAG
*
22318219 CTATACCGACGAAAGGGT
1 CTATACCGGCGAAAGGGT
*
22318237 CTATACCGGCGGAAGGGT
1 CTATACCGGCGAAAGGGT
22318255 CTATACCGG
1 CTATACCGG
22318264 ACCACTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.31, T:0.18
Consensus pattern (18 bp):
CTATACCGGCGAAAGGGT
Found at i:22321396 original size:11 final size:12
Alignment explanation
Indices: 22321374--22321402 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
22321364 AAATTTGTAA
22321374 TAAAATCAAAAT
1 TAAAATCAAAAT
22321386 TAAAA-CAAAAT
1 TAAAATCAAAAT
22321397 TAAAAT
1 TAAAAT
22321403 GAAGAATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (12 bp):
TAAAATCAAAAT
Found at i:22322746 original size:6 final size:6
Alignment explanation
Indices: 22322735--22322832 Score: 70
Period size: 6 Copynumber: 16.2 Consensus size: 6
22322725 TTACTCCTAG
* * * * *
22322735 TTTATT TTTATT TTTATT TTTATT TCTCATT TTTATC TTTGTC TTTAAT
1 TTTATT TTTATT TTTATT TTTATT T-TTATT TTTATT TTTATT TTTATT
* * * * * * * *
22322784 TTTAAT TTAATT TTAATC TTAATT TTTATT TTTAAT GTTAGT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
22322832 T
1 T
22322833 ATTTTAATAA
Statistics
Matches: 74, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
6 69 0.93
7 5 0.07
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.70
Consensus pattern (6 bp):
TTTATT
Found at i:22322816 original size:19 final size:18
Alignment explanation
Indices: 22322789--22322832 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
22322779 TTAATTTTAA
* *
22322789 TTTAATTTTAATCTTAATT
1 TTTATTTTTAATCTT-AGT
*
22322808 TTTATTTTTAATGTTAGT
1 TTTATTTTTAATCTTAGT
22322826 TTTATTT
1 TTTATTT
22322833 ATTTTAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTATTTTTAATCTTAGT
Found at i:22328486 original size:29 final size:28
Alignment explanation
Indices: 22328362--22328492 Score: 136
Period size: 28 Copynumber: 4.6 Consensus size: 28
22328352 TCTGAAATTA
* *
22328362 CCATAAAAGCTTTCATTTCAAAGGTTCG
1 CCATAAAGGCTTTCCTTTCAAAGGTTCG
* * * * **
22328390 CCACAAAGGCTTCCCTTTTAGAGGTTTT
1 CCATAAAGGCTTTCCTTTCAAAGGTTCG
*
22328418 CCATAAAGGCTTTCCTTTCAGAGGTTCG
1 CCATAAAGGCTTTCCTTTCAAAGGTTCG
* *
22328446 CCACAAAGGCTTTCCTTTCCAAAGGTTTG
1 CCATAAAGGCTTTCCTTT-CAAAGGTTCG
* *
22328475 GCATAAATGCTTTCCTTT
1 CCATAAAGGCTTTCCTTT
22328493 TTCTGGTGTG
Statistics
Matches: 83, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
28 60 0.72
29 23 0.28
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (28 bp):
CCATAAAGGCTTTCCTTTCAAAGGTTCG
Found at i:22330967 original size:50 final size:49
Alignment explanation
Indices: 22330874--22331018 Score: 166
Period size: 50 Copynumber: 2.9 Consensus size: 49
22330864 TTTCTTGTAC
* * * ** *
22330874 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-GGGACCTCTCATATCAG
* * *
22330924 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-AGGGACCTCTCATATCAG
*
22330974 TGCCAACT-CCATGTCCTAGACATGGTCTTACAGGGACCTCTCATA
1 TGCCAA-TGCCATGTCCCAGACATGGTCTTACAGGGACCTCTCATA
22331019 ACCTCAATGA
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
49 12 0.15
50 67 0.84
51 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.27
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGACCTCTCATATCAG
Found at i:22331056 original size:55 final size:49
Alignment explanation
Indices: 22330895--22331070 Score: 140
Period size: 50 Copynumber: 3.4 Consensus size: 49
22330885 TATCCCAAAT
** * * * *
22330895 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCA-TGCCATGTCCCAGAC
1 ATGGTCTTACA-GGGACCTCTCATCTCAGTGCCAACT-CCATGTCCCTGAC
*
22330945 ATGGTCTTACGGGGGACCTCTCATCTCAGTGCCAACTCCATGT-CCTAGAC
1 ATGGTCTTAC-AGGGACCTCTCATCTCAGTGCCAACTCCATGTCCCT-GAC
* *
22330995 ATGGTCTTACAGGGACCTCTCATAACCTCAATGATGCGAATTCCATGTCCCTGAC
1 ATGGTCTTACAGGGACCTCTCAT---CTC-A-G-TGCCAACTCCATGTCCCTGAC
* *
22331050 AGGGTCTTACATGGGATCTCT
1 ATGGTCTTACA-GGGACCTCT
22331071 TTACCCAAAT
Statistics
Matches: 103, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
49 14 0.14
50 47 0.46
51 1 0.01
52 3 0.03
53 1 0.01
54 1 0.01
55 25 0.24
56 11 0.11
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (49 bp):
ATGGTCTTACAGGGACCTCTCATCTCAGTGCCAACTCCATGTCCCTGAC
Found at i:22336595 original size:103 final size:103
Alignment explanation
Indices: 22336415--22336620 Score: 360
Period size: 103 Copynumber: 2.0 Consensus size: 103
22336405 ATGCTTGTTT
22336415 GGTGGTTATTTTATGATGGCACAATGTATGTTAGCACATTTTAGACACCCTAGAGTAAGTATGAC
1 GGTGGTTATTTTATGATGGCACAATGTATGTTAGCACATTTTAGACACCCTAGAGTAAGTATGAC
*
22336480 TACAATTTGTATGAATTCCATAATAAGAAAGGAAACAA
66 TACAATTCGTATGAATTCCATAATAAGAAAGGAAACAA
* *
22336518 GGTGGTTATTTTATGACT-GTACAATGTATGTTAGCACGTTTTAGACACCCTAGAGTAAGTATGA
1 GGTGGTTATTTTATGA-TGGCACAATGTATGTTAGCACATTTTAGACACCCTAGAGTAAGTATGA
*
22336582 CTACAATTCGTATGAATTCCATAATAATAAAGGAAACAA
65 CTACAATTCGTATGAATTCCATAATAAGAAAGGAAACAA
22336621 AAATATGTAT
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
103 97 0.99
104 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (103 bp):
GGTGGTTATTTTATGATGGCACAATGTATGTTAGCACATTTTAGACACCCTAGAGTAAGTATGAC
TACAATTCGTATGAATTCCATAATAAGAAAGGAAACAA
Found at i:22339308 original size:65 final size:65
Alignment explanation
Indices: 22339204--22339349 Score: 238
Period size: 65 Copynumber: 2.2 Consensus size: 65
22339194 ACAGGACATG
* * *
22339204 TTTGGTGTGTTGGAGAGTTTTAGCTTTATGCTTCACTTTTGAGATATGTTAATCTCTATGAGTCT
1 TTTGGTGTGTTGGAGAGTGTTAGATTTATGCTTCACTTTTGAGATATGTTAATCTCTATGAGTCA
* * *
22339269 TTTGGTGTGTTGGAGAGTGTTAGATTTATGCTTTACTTTTGCGATATGTTCATCTCTATGAGTCA
1 TTTGGTGTGTTGGAGAGTGTTAGATTTATGCTTCACTTTTGAGATATGTTAATCTCTATGAGTCA
22339334 TTTGGTGTGTTGGAGA
1 TTTGGTGTGTTGGAGA
22339350 TCTGTGTATT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 75 1.00
ACGTcount: A:0.18, C:0.10, G:0.26, T:0.47
Consensus pattern (65 bp):
TTTGGTGTGTTGGAGAGTGTTAGATTTATGCTTCACTTTTGAGATATGTTAATCTCTATGAGTCA
Found at i:22344360 original size:14 final size:15
Alignment explanation
Indices: 22344337--22344377 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
22344327 ATATCAAGTT
*
22344337 GTGAAAAAAAAATTC
1 GTGAAAAAAAATTTC
22344352 GTGAAAAAAAATTTC
1 GTGAAAAAAAATTTC
22344367 GTGAAAAAAAA
1 GTGAAAAAAAA
22344378 GGAAACCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.61, C:0.05, G:0.15, T:0.20
Consensus pattern (15 bp):
GTGAAAAAAAATTTC
Done.