Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 72 of 211
Found at i:22348725 original size:22 final size:22
Alignment explanation
Indices: 22348700--22348744 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
22348690 AGGATTAATG
*
22348700 ATAACGCTTATAAGTTAGATTT
1 ATAACGCTCATAAGTTAGATTT
22348722 ATAACGCTCATAAGTTAGATTT
1 ATAACGCTCATAAGTTAGATTT
22348744 A
1 A
22348745 CCTGGTGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (22 bp):
ATAACGCTCATAAGTTAGATTT
Found at i:22352085 original size:21 final size:21
Alignment explanation
Indices: 22352060--22352101 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22352050 GCAATTTTGT
22352060 AATTAAATG-GAAAATAAAACA
1 AATT-AATGTGAAAATAAAACA
*
22352081 AATTAATGTGAAATTAAAACA
1 AATTAATGTGAAAATAAAACA
22352102 TTTTAACTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
AATTAATGTGAAAATAAAACA
Found at i:22355623 original size:28 final size:28
Alignment explanation
Indices: 22355591--22355656 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
22355581 TTAATCCCTA
*
22355591 GCAGACATTTCA-CCTCAGATTTCCCTTG
1 GCAGACATTTCACCCT-AGATTGCCCTTG
22355619 GCAGACATTTCACCCTAGATTGCCCTTG
1 GCAGACATTTCACCCTAGATTGCCCTTG
*
22355647 TCAGAC-TTTC
1 GCAGACATTTC
22355657 CACTTATCCT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
27 4 0.11
28 28 0.80
29 3 0.09
ACGTcount: A:0.21, C:0.32, G:0.15, T:0.32
Consensus pattern (28 bp):
GCAGACATTTCACCCTAGATTGCCCTTG
Found at i:22355703 original size:28 final size:28
Alignment explanation
Indices: 22355663--22355761 Score: 128
Period size: 28 Copynumber: 3.5 Consensus size: 28
22355653 TTTCCACTTA
* *
22355663 TCCTTGGTAGACTTTCCTCTTATGATAG
1 TCCTTGGTGGACTTTCCTCTTAAGATAG
* *
22355691 TCCTTGGTGGACTTTCCACTTACGATAG
1 TCCTTGGTGGACTTTCCTCTTAAGATAG
* *
22355719 TCCTTGGAGGACTGTCCT-TTCAAGATAG
1 TCCTTGGTGGACTTTCCTCTT-AAGATAG
22355747 TCCTTGGTGGACTTT
1 TCCTTGGTGGACTTT
22355762 GCTTTTTTTG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
27 2 0.03
28 59 0.97
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (28 bp):
TCCTTGGTGGACTTTCCTCTTAAGATAG
Found at i:22356278 original size:35 final size:34
Alignment explanation
Indices: 22356239--22356355 Score: 144
Period size: 35 Copynumber: 3.3 Consensus size: 34
22356229 GTAGATTGCT
*
22356239 TGTAAACCATTTCCATGGTGTCACTCCATAGAGCC
1 TGTAAA-CATTTCCATAGTGTCACTCCATAGAGCC
* * **
22356274 TGTAAATCATTTCCACAGTGTCACTCCTTAGAGAT
1 TGTAAA-CATTTCCATAGTGTCACTCCATAGAGCC
*
22356309 TGTAGAACATTTCCATAGTGTCACTCCGTAGAGCC
1 TGTA-AACATTTCCATAGTGTCACTCCATAGAGCC
22356344 TGTAAAGCATTT
1 TGTAAA-CATTT
22356356 GTCCAACCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
34 2 0.03
35 66 0.94
36 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (34 bp):
TGTAAACATTTCCATAGTGTCACTCCATAGAGCC
Found at i:22356870 original size:19 final size:19
Alignment explanation
Indices: 22356846--22356882 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
22356836 TGAAGGCAAG
22356846 GCCCAAT-AAGCAAATTCCA
1 GCCCAATCAAG-AAATTCCA
22356865 GCCCAATCAAGAAATTCC
1 GCCCAATCAAGAAATTCC
22356883 TACATACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.41, C:0.32, G:0.11, T:0.16
Consensus pattern (19 bp):
GCCCAATCAAGAAATTCCA
Found at i:22359884 original size:69 final size:70
Alignment explanation
Indices: 22359752--22359884 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
22359742 TAGTTTATTA
* * * * *
22359752 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
22359817 CTTAG
66 CTTAG
22359822 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
22359885 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:22361733 original size:48 final size:48
Alignment explanation
Indices: 22361662--22361900 Score: 397
Period size: 48 Copynumber: 5.0 Consensus size: 48
22361652 CACAAGATTA
22361662 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
22361710 AGATATGTATATGTGGTAAAGCCGAATGGGTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
22361758 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AAATATGTATG
*
22361807 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
22361855 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
22361901 GGAGGTGTGG
Statistics
Matches: 180, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
48 135 0.75
49 45 0.25
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:22361835 original size:97 final size:97
Alignment explanation
Indices: 22361662--22361893 Score: 394
Period size: 97 Copynumber: 2.4 Consensus size: 97
22361652 CACAAGATTA
*
22361662 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AAATATGTATGAGATATGTATATGTGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATATATGAGATATGTATATGTGG
*
22361726 TAAAGCCGAATGGGTAATGTGAAATATGTATG
66 TAAAGCCGAATGGCTAATGTGAAATATGTATG
*
22361758 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATATATGAGATATGTATATGTGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATATATGAGATATGTATATGTGG
*
22361823 TAAAGCCGAATGGCTAGTGTGAAATATGTATG
66 TAAAGCCGAATGGCTAATGTGAAATATGTATG
* * *
22361855 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
22361894 GTATGTAGGA
Statistics
Matches: 127, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
96 36 0.28
97 91 0.72
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (97 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAATATATATGAGATATGTATATGTGG
TAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:22362086 original size:37 final size:37
Alignment explanation
Indices: 22362036--22362150 Score: 169
Period size: 37 Copynumber: 3.1 Consensus size: 37
22362026 ACATGAAACT
*
22362036 TGGAAATATATTCCGGGTAAAACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
22362073 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
* * * *
22362110 TGGAGAT-TTTGTCCGGGTAAGACCCGATAACTTCGTG
1 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
22362147 TGGA
1 TGGA
22362151 GATTTCATCT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
36 2 0.03
37 70 0.97
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (37 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:22363481 original size:40 final size:40
Alignment explanation
Indices: 22363437--22363668 Score: 346
Period size: 40 Copynumber: 5.8 Consensus size: 40
22363427 AGTTAGATAC
* *
22363437 CCGGGCTAAGTCCTGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGAGCTGGTGTTATAT
*
22363477 CCGGGCTAAGTCCCAAAGAGCATTCGAGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGAGCTGGTGTTATAT
*
22363517 CCGGGCTAAGTCTCGAAGAGCATTC-ATGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGA-GCTGGTGTTATAT
* *
22363557 CCGGGTTAGGTCCCGAAGAGCATTCGAGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGAGCTGGTGTTATAT
*
22363597 CCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTG-T-TAT
1 CCGGGCTAAGTCCCGAAGAGCATTCGAGCTGGTGTTATAT
*
22363635 CCGGGCTAAGTCTCGAAGAGCATTC-ATGCTGGTG
1 CCGGGCTAAGTCCCGAAGAGCATTCGA-GCTGGTG
22363669 ATGTGTATTC
Statistics
Matches: 178, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
37 1 0.01
38 33 0.19
39 2 0.01
40 141 0.79
41 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCGAGCTGGTGTTATAT
Found at i:22366097 original size:69 final size:70
Alignment explanation
Indices: 22365965--22366097 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
22365955 TAGTTTATTA
* * * * *
22365965 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
22366030 CTTAG
66 CTTAG
22366035 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
22366098 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:22367953 original size:48 final size:48
Alignment explanation
Indices: 22367882--22368121 Score: 390
Period size: 48 Copynumber: 5.0 Consensus size: 48
22367872 CACAAGATTA
22367882 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
22367930 AGATATGTATATGTGGTAAAGCCGAATGGGTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* *
22367978 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAAATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT--ATG
*
22368028 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
22368076 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
22368122 GGAGGTGTGG
Statistics
Matches: 180, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
48 135 0.75
50 45 0.25
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:22368137 original size:98 final size:96
Alignment explanation
Indices: 22367882--22368121 Score: 390
Period size: 98 Copynumber: 2.5 Consensus size: 96
22367872 CACAAGATTA
22367882 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
*
22367947 AAAGCCGAATGGGTAATGTGAAATATGTATG
66 AAAGCCGAATGGCTAATGTGAAATATGTATG
* *
22367978 GGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATAAATGAGATATGTATATGTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT--ATGAGATATGTATATGTG
*
22368043 GTAAAGCCGAATGGCTAGTGTGAAATATGTATG
64 GTAAAGCCGAATGGCTAATGTGAAATATGTATG
* * * *
22368076 AGATACGTATATGTGGTAAAGCCGAAGGGCTAGTGTGAAGTATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
22368122 GGAGGTGTGG
Statistics
Matches: 132, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
96 44 0.33
98 88 0.67
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.30
Consensus pattern (96 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:22368307 original size:37 final size:37
Alignment explanation
Indices: 22368257--22368371 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
22368247 ACATGAAACT
22368257 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
22368294 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
* * * *
22368331 TGGAGAT-TTTGTCCGGGTAAGACCCGATAACTTCGTG
1 TGGAAATATAT-TCCGGGTAAGACCCGATGACTACGTG
22368368 TGGA
1 TGGA
22368372 GATTTCATCT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
36 2 0.03
37 71 0.97
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (37 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTG
Found at i:22373573 original size:23 final size:22
Alignment explanation
Indices: 22373538--22373584 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
22373528 ATTTAATTAA
22373538 TTTTTTAAATTTTAA-AAATATT
1 TTTTTTAAATTTTAATAAA-ATT
*
22373560 TTTTTTATATTTTTAATAAAATT
1 TTTTTTA-AATTTTAATAAAATT
22373583 TT
1 TT
22373585 AAAAAATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 7 0.32
23 12 0.55
24 3 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTTTAAATTTTAATAAAATT
Found at i:22375965 original size:40 final size:38
Alignment explanation
Indices: 22375916--22375990 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
22375906 AAACATTTCA
* *
22375916 TATAACTATTTCCGTATAACCGATTCATATAATCATTCTG
1 TATAACTATTTCC--ATAACAGATTCATATAACCATTCTG
* *
22375956 TATATCTATTTCCATAATAGATTCATATAACCATT
1 TATAACTATTTCCATAACAGATTCATATAACCATT
22375991 TTGTTTATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 19 0.61
40 12 0.39
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41
Consensus pattern (38 bp):
TATAACTATTTCCATAACAGATTCATATAACCATTCTG
Found at i:22378162 original size:50 final size:50
Alignment explanation
Indices: 22378097--22378473 Score: 251
Period size: 50 Copynumber: 7.5 Consensus size: 50
22378087 TTTGGAAAGT
* * * *
22378097 AAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGTAATGTTAGGGAAGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGCTAGGGAAGC
** * * * * *
22378147 AAGATTCACCGTTGTGGCTTTAATCTGCTTCACTGTACTGCCT-GGGAGTGT
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATG-CTAGGGA-AGC
* ** * ** * *
22378198 GAGATTCGTCATTGTAACTTTAATCCTTTTAACTGCAATG-TCGGGAAAGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGCTAGGG-AAGC
** * * * *
22378248 AAGATTCACCGTTGTGGCTTTAATCTGCTTCACTGCATTGCAAGGGAAGT
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGCTAGGGAAGC
* * * * * * * *
22378298 AACACTCGCCGCTGTGGCTTTAGTCTTTTTAACTCCAATG-TCATGGAGGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGCT-AGGGAAGC
** * ** * * *
22378348 AAGATTCACCGTTGTATCTTTAATCTGTTCCACTGCATTGCCTA-GGAGGT
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATG-CTAGGGAAGC
** * * *
22378398 AAGATTTGCTGTTGTAGCTTTAATCTTTTTAACTGCAATG-TCGGGGAAGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGCT-AGGGAAGC
22378448 AAGATTCACCGTTGTGGCTTTAATCT
1 AAGATTCACCGTTGTGGCTTTAATCT
22378474 GTTCCATGGC
Statistics
Matches: 238, Mismatches: 79, Indels: 20
0.71 0.23 0.06
Matches are distributed among these distances:
48 1 0.00
49 1 0.00
50 200 0.84
51 35 0.15
52 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.35
Consensus pattern (50 bp):
AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGCTAGGGAAGC
Found at i:22378273 original size:101 final size:99
Alignment explanation
Indices: 22378095--22378594 Score: 457
Period size: 100 Copynumber: 5.1 Consensus size: 99
22378085 CTTTTGGAAA
* * *
22378095 GTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGTAATGTTAGGGAAGCAAGATTCACCGTT
1 GTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATG-TCGGGAAGCAAGATTCACCGTT
* *
22378160 GTGGCTTTAATCTGCTTCACTGTACTGCCTGGGAG
65 GTGGCTTTAATCTGCTTCACTGCATTGCCTGGGAG
* * * *
22378195 TGTGAGATTCGTCATTGTAACTTTAATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGT
1 -GTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGG-AAGCAAGATTCACCGT
** *
22378260 TGTGGCTTTAATCTGCTTCACTGCATTGCAAGGGAA
64 TGTGGCTTTAATCTGCTTCACTGCATTGCCTGGGAG
* * ** * * * * *
22378296 GTAACACTCGCCGCTGTGGCTTTAGTCTTTTTAACTCCAATGTCATGGAGGCAAGATTCACCGTT
1 GTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGGAAGCAAGATTCACCGTT
** *
22378361 GTATCTTTAATCTG-TTCCACTGCATTGCCTAGGAG
65 GTGGCTTTAATCTGCTT-CACTGCATTGCCTGGGAG
* **
22378396 GTAAGATTTGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTT
1 GTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGGAAGCAAGATTCACCGTT
* * * *
22378461 GTGGCTTTAATCTG-TTC-CATGGCATCG-CTAAGAAA
65 GTGGCTTTAATCTGCTTCAC-T-GCATTGCCT-GGGAG
* ** * * * *
22378496 GTAGGATTCATCGTTGTGGCTTTAA------T--CTGCAATGTCGGGGAAACAAGATTCACCGAT
1 GTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTC-GGGAAGCAAGATTCACCGTT
* * *
22378553 GTGGCTTTAATTTGCTCCACTGCATCGCCTGGGAG
65 GTGGCTTTAATCTGCTTCACTGCATTGCCTGGGAG
22378588 GTAAGAT
1 GTAAGAT
22378595 CTGTAATTCT
Statistics
Matches: 329, Mismatches: 61, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
92 56 0.17
93 5 0.02
94 2 0.01
98 1 0.00
99 6 0.02
100 174 0.53
101 85 0.26
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.34
Consensus pattern (99 bp):
GTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGAAGCAAGATTCACCGTTG
TGGCTTTAATCTGCTTCACTGCATTGCCTGGGAG
Found at i:22378516 original size:200 final size:201
Alignment explanation
Indices: 22378090--22378523 Score: 520
Period size: 200 Copynumber: 2.2 Consensus size: 201
22378080 CGTAACTTTT
* * * * ** *
22378090 GGAAAGTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGTAATGTTAGGGAAGCAAGATTCA
1 GGAAAGTAACACTCACCGTTGTGGCTTTAATCTTTTTAACTCCAATGTCAGGGAAGCAAGATTCA
* * * *
22378155 CCGTTGTGGCTTTAATCTGCTTCACTGTACTGCCTGGGAGTGTGAGATTCGTCATTGTAACTTTA
66 CCGTTGTAGCTTTAATCTGCTTCACTGCACTGCCTAGGAGTGTAAGATTCGTCATTGTAACTTTA
22378220 ATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCACTGCA
131 ATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCACTGCA
*
22378285 TTGCAA
196 TCGCAA
* * * * * *
22378291 GGGAAGTAACACTCGCCGCTGTGGCTTTAGTCTTTTTAACTCCAATGTCATGGAGGCAAGATTCA
1 GGAAAGTAACACTCACCGTTGTGGCTTTAATCTTTTTAACTCCAATGTCAGGGAAGCAAGATTCA
* * * * *
22378356 CCGTTGTATCTTTAATCTG-TTCCACTGCATTGCCTAGGAG-GTAAGATTTG-CTGTTGTAGCTT
66 CCGTTGTAGCTTTAATCTGCTT-CACTGCACTGCCTAGGAGTGTAAGATTCGTC-ATTGTAACTT
* *
22378418 TAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTG-TTC-CAT
129 TAATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCAC-T
22378481 GGCATCGCTAA
193 -GCATCGC-AA
** * *
22378492 -GAAAGTAGGATTCATCGTTGTGGCTTTAATCT
1 GGAAAGTAACACTCACCGTTGTGGCTTTAATCT
22378524 GCAATGTCGG
Statistics
Matches: 197, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
198 1 0.01
199 5 0.03
200 103 0.52
201 88 0.45
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.35
Consensus pattern (201 bp):
GGAAAGTAACACTCACCGTTGTGGCTTTAATCTTTTTAACTCCAATGTCAGGGAAGCAAGATTCA
CCGTTGTAGCTTTAATCTGCTTCACTGCACTGCCTAGGAGTGTAAGATTCGTCATTGTAACTTTA
ATCCTTTTAACTGCAATGTCGGGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCACTGCA
TCGCAA
Found at i:22378691 original size:44 final size:43
Alignment explanation
Indices: 22378620--22379266 Score: 220
Period size: 44 Copynumber: 13.9 Consensus size: 43
22378610 CTATTCCACC
* * * *
22378620 GTAATCTCAAGGAAATAGGATTACTGGCTTCAATCTGCTCAGCT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCA-CT
22378664 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---T--G-----CTC-ACT
* ** *
22378718 GTAA-CTTCAGAGAGATAAGATCCTT-T-ATTTTAATCCT-CTCCACT
1 GTAATC-TCAGGGAGATAAGAT--TTCTGGCTTCAAT-CTGCT-CACT
* * * * *
22378762 GTAATCTCAGGGAAATAGGATTACTGGCTTTAATCTGCTCTGCT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTC-ACT
22378806 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---T--G-----CTC-ACT
** * * *
22378860 GTAA-CTTCAGATAGATAAGACCCTTTAT---TTTAATCCGCTCCACT
1 GTAATC-TCAGGGAGATAAGA---TTTCTGGCTTCAATCTGCT-CACT
* * *
22378904 GTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCTGCT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTC-ACT
*
22378948 GTAATATCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTAT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---TGC--TC-A--C--T
* * *** *
22379001 GTAA-CTTCAGAGAGATAAGA-TCCTTTATTTAATCTGCTCCACT
1 GTAATC-TCAGGGAGATAAGATTTCTGGCTTCAATCTGCT-CACT
* * * * *
22379044 GTAACCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCT-CACT
* * *
22379088 GTAATCTCAGAGAGATAAGATTTCTAGTTTCAATCTGATGCGATCTACT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATC---TGC--TC-ACT
* * ** *
22379137 CTACTATAACTTCAGAGAGATAAGATCCTT-T-ATTTTAATCTGCTCCACT
1 GTA--AT--C-TCAGGGAGATAAGAT--TTCTGGCTTCAATCTGCT-CACT
* * * * *
22379186 ATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCT-CACT
*
22379230 GTAATCTCAAGGAGATAAGATTTCTGGCTTCAATCTG
1 GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTG
22379267 ATGCGATCTA
Statistics
Matches: 459, Mismatches: 74, Indels: 140
0.68 0.11 0.21
Matches are distributed among these distances:
41 3 0.01
42 2 0.00
43 23 0.05
44 263 0.57
45 6 0.01
47 12 0.03
48 2 0.00
49 20 0.04
50 1 0.00
51 6 0.01
52 10 0.02
53 21 0.05
54 78 0.17
55 4 0.01
56 4 0.01
57 4 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (43 bp):
GTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGCTCACT
Found at i:22378870 original size:142 final size:141
Alignment explanation
Indices: 22378614--22379408 Score: 1279
Period size: 142 Copynumber: 5.6 Consensus size: 141
22378604 TTTGGTCTAT
* * * * *
22378614 TCCACCGTAATCTCAAGGAAATAGGATTACTGGCTTCAATCTGCTCAGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
22378679 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
22378744 ATTTTAATCCTC
131 ATTTTAAT-CTC
* * *
22378756 TCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTTAATCTGCTCTGCTGTAATCTCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
* *
22378821 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGATAGATAAGACCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
*
22378886 ATTTTAATCCGC
131 ATTTTAAT-CTC
* *
22378898 TCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCTGCTGTAATATCAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
22378963 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTA-TGTAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
22379027 A-TTTAATCTGC
131 ATTTTAATCT-C
* * *
22379038 TCCACTGTAACCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
* * *
22379103 TAAGATTTCTAGTTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
22379168 ATTTTAATCTGC
131 ATTTTAATCT-C
* * *
22379180 TCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAAGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
*
22379245 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTT
66 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
*
22379310 ATTTTAATTCAC
131 ATTTTAA-TCTC
* * *
22379322 TCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTACTCTGAGGGAGA
1 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
*
22379387 TAAGGTTTCTGGCTTCAATCTG
66 TAAGATTTCTGGCTTCAATCTG
22379409 CTCCACTGTA
Statistics
Matches: 614, Mismatches: 35, Indels: 8
0.93 0.05 0.01
Matches are distributed among these distances:
139 1 0.00
140 102 0.17
141 53 0.09
142 456 0.74
143 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (141 bp):
TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGA
TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
ATTTTAATCTC
Found at i:22379164 original size:424 final size:424
Alignment explanation
Indices: 22378614--22379408 Score: 1331
Period size: 424 Copynumber: 1.9 Consensus size: 424
22378604 TTTGGTCTAT
* * *
22378614 TCCACCGTAATCTCAAGGAAATAGGATTACTGGCTTCAATCTGCTCAGCTGTAATCTCAGGGAGA
1 TCCACCGTAACCTCAAGGAAATAGGATTACTAGCTTCAATCTGCTCAGCTGTAATCTCAGAGAGA
* *
22378679 TAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
* * * *
22378744 ATTTTAATCCT-CTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTTAATCTGCTCTGCTGT
131 ATTTTAAT-CTGCTCCACTATAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGT
* *
22378808 AATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGATA
195 AATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGA
* * *
22378873 GATAAGACCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCAAT
260 GATAAGACCCTTTATTTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAAT
22378938 CTGCTCTGCTGTAATATCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTATGT
325 CTGCTCTGCTGTAATATCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTATGT
22379003 AACTTCAGAGAGATAAGATCCTTTATTTAATCTGC
390 AACTTCAGAGAGATAAGATCCTTTATTTAATCTGC
* * * *
22379038 TCCACTGTAACCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGAGAGA
1 TCCACCGTAACCTCAAGGAAATAGGATTACTAGCTTCAATCTGCTCAGCTGTAATCTCAGAGAGA
*
22379103 TAAGATTTCTAGTTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
66 TAAGATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
*
22379168 ATTTTAATCTGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTA
131 ATTTTAATCTGCTCCACTATAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTA
*
22379233 ATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTTAGAGAG
196 ATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
* *
22379298 ATAAGATCCTTTATTTTAATTCACTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATC
261 ATAAGACCCTTTATTTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATC
* * * *
22379363 TGCTCTGCTGTACTCTGAGGGAGATAAGGTTTCTGGCTTCAATCTG
326 TGCTCTGCTGTAATATCAGGGAGATAAGATTTCTGGCTTCAATCTG
22379409 CTCCACTGTA
Statistics
Matches: 343, Mismatches: 27, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
423 2 0.01
424 341 0.99
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (424 bp):
TCCACCGTAACCTCAAGGAAATAGGATTACTAGCTTCAATCTGCTCAGCTGTAATCTCAGAGAGA
TAAGATTTCTAGCTTCAATCTGATGCGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTTT
ATTTTAATCTGCTCCACTATAATCTCAGGGAAATAGGATTACTAGCTTCAATCTGCTCCGCTGTA
ATCTCAAGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTACTGTAACTTCAGAGAG
ATAAGACCCTTTATTTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTCAATC
TGCTCTGCTGTAATATCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTACTCTATGTA
ACTTCAGAGAGATAAGATCCTTTATTTAATCTGC
Found at i:22379418 original size:44 final size:45
Alignment explanation
Indices: 22379321--22379434 Score: 119
Period size: 44 Copynumber: 2.6 Consensus size: 45
22379311 TTTTAATTCA
* * *
22379321 CTCCACTATAATCTCAGGGAGAT-AGGATTACTAGCTTCAATCTG
1 CTCCACTGTACTCTGAGGGAGATAAGGATTACTAGCTTCAATCTG
** * *
22379365 CTCTGCTGTACTCTGAGGGAGATAAGG-TTTCTGGCTTCAATCTG
1 CTCCACTGTACTCTGAGGGAGATAAGGATTACTAGCTTCAATCTG
22379409 CTCCACTGTAACATCTGA--GAGATAAG
1 CTCCACTGT-AC-TCTGAGGGAGATAAG
22379435 ATTCACCATT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
44 48 0.83
45 5 0.09
46 5 0.09
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (45 bp):
CTCCACTGTACTCTGAGGGAGATAAGGATTACTAGCTTCAATCTG
Found at i:22381753 original size:6 final size:6
Alignment explanation
Indices: 22381723--22381830 Score: 58
Period size: 6 Copynumber: 17.7 Consensus size: 6
22381713 ATTCTCTCTT
* * * ** * **
22381723 TTTTCA TTTTCA TTTTGA CTTTGA TTTTGA TTTTTC TTTT-- TCTTCT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA
* ** *
22381769 TTTTGT TTTTGA TCTTTCTT TTTTGG TTTTTGA TTTTGA TTTTGA TTTTGA
1 TTTTGA TTTTGA T-TTT-GA TTTTGA TT-TTGA TTTTGA TTTTGA TTTTGA
22381820 TTTTGAA TTTT
1 TTTTG-A TTTT
22381831 TTTATTTTTG
Statistics
Matches: 82, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
4 3 0.04
6 62 0.76
7 16 0.20
8 1 0.01
ACGTcount: A:0.11, C:0.07, G:0.11, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:22381781 original size:28 final size:27
Alignment explanation
Indices: 22381742--22381811 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 27
22381732 TCATTTTGAC
*
22381742 TTTGATTTTGATTTTTCTTTTTCTTCTT
1 TTTGATTTTGATTTTTCTTTTT-TGCTT
* * *
22381770 TTTGTTTTTGATCTTTCTTTTTTGGTT
1 TTTGATTTTGATTTTTCTTTTTTGCTT
22381797 TTTGATTTTGATTTT
1 TTTGATTTTGATTTT
22381812 GATTTTGATT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 16 0.44
28 20 0.56
ACGTcount: A:0.07, C:0.07, G:0.11, T:0.74
Consensus pattern (27 bp):
TTTGATTTTGATTTTTCTTTTTTGCTT
Found at i:22381789 original size:19 final size:18
Alignment explanation
Indices: 22381765--22381823 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
22381755 TTTCTTTTTC
22381765 TTCTTTTTGTTTTTGATCT
1 TTCTTTTTGTTTTTGAT-T
22381784 TTCTTTTTTGGTTTTTGATT
1 TTC-TTTTT-GTTTTTGATT
** *
22381804 TTGATTTTGATTTTGATT
1 TTCTTTTTGTTTTTGATT
22381822 TT
1 TT
22381824 GAATTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 11 0.31
19 7 0.20
20 8 0.23
21 9 0.26
ACGTcount: A:0.08, C:0.05, G:0.14, T:0.73
Consensus pattern (18 bp):
TTCTTTTTGTTTTTGATT
Found at i:22381792 original size:21 final size:22
Alignment explanation
Indices: 22381761--22381802 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
22381751 GATTTTTCTT
*
22381761 TTTCTTCTTTTTGTTTTTGATC
1 TTTCTTCTTTTGGTTTTTGATC
22381783 TTTCTT-TTTTGGTTTTTGAT
1 TTTCTTCTTTTGGTTTTTGAT
22381803 TTTGATTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.05, C:0.10, G:0.12, T:0.74
Consensus pattern (22 bp):
TTTCTTCTTTTGGTTTTTGATC
Found at i:22386476 original size:15 final size:15
Alignment explanation
Indices: 22386456--22386486 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
22386446 CTAATATTTA
22386456 AAACTTATTAAAAAT
1 AAACTTATTAAAAAT
22386471 AAACTTATTAAAAAT
1 AAACTTATTAAAAAT
22386486 A
1 A
22386487 CTAAGCTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (15 bp):
AAACTTATTAAAAAT
Found at i:22400882 original size:51 final size:50
Alignment explanation
Indices: 22400822--22400962 Score: 212
Period size: 50 Copynumber: 2.8 Consensus size: 50
22400812 TTGGTTCACA
22400822 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCAATACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACT-TCCAATACACG
* * *
22400873 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-TTCTAGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACC-ATCACTTCCAATACACG
* *
22400923 TAGTAGCCTGCACAGAGTACTACACACGTGACCATCACTT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTT
22400963 TCACTTTCAC
Statistics
Matches: 82, Mismatches: 6, Indels: 5
0.88 0.06 0.05
Matches are distributed among these distances:
49 4 0.05
50 41 0.50
51 33 0.40
52 4 0.05
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTTCCAATACACG
Found at i:22402888 original size:25 final size:25
Alignment explanation
Indices: 22402852--22402941 Score: 119
Period size: 25 Copynumber: 3.6 Consensus size: 25
22402842 ATACATGTAT
* * *
22402852 GCTCATATGAGCTGTGAATTGGTAT
1 GCTCCTATGAGCTGTGAATCGGTAA
*
22402877 GCTCTCTA-GAGCTGTCAATCGGTAA
1 GCTC-CTATGAGCTGTGAATCGGTAA
*
22402902 GCTCATATGAGCTGTGAATCGGTAA
1 GCTCCTATGAGCTGTGAATCGGTAA
22402927 GCTCCTATGAGCTGT
1 GCTCCTATGAGCTGT
22402942 AGGGTAGTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
24 2 0.04
25 52 0.93
26 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (25 bp):
GCTCCTATGAGCTGTGAATCGGTAA
Found at i:22411338 original size:11 final size:11
Alignment explanation
Indices: 22411322--22411346 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22411312 GGTGTAAAAC
22411322 TACTTATATTT
1 TACTTATATTT
22411333 TACTTATATTT
1 TACTTATATTT
22411344 TAC
1 TAC
22411347 ACTAGTGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.12, G:0.00, T:0.60
Consensus pattern (11 bp):
TACTTATATTT
Found at i:22414316 original size:38 final size:40
Alignment explanation
Indices: 22414269--22414353 Score: 129
Period size: 38 Copynumber: 2.2 Consensus size: 40
22414259 TGGTCTGAAC
*
22414269 TAAAGACATATATTTAAGATGT-CTAAACTAGGACATA-T
1 TAAAAACATATATTTAAGATGTCCTAAACTAGGACATACT
* *
22414307 TCAAAACATATATTTAAGATGTCCTAAACTATGACATACT
1 TAAAAACATATATTTAAGATGTCCTAAACTAGGACATACT
22414347 TAAAAAC
1 TAAAAAC
22414354 CCTTATTAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
38 20 0.49
39 14 0.34
40 7 0.17
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (40 bp):
TAAAAACATATATTTAAGATGTCCTAAACTAGGACATACT
Found at i:22414400 original size:38 final size:39
Alignment explanation
Indices: 22414316--22414419 Score: 120
Period size: 38 Copynumber: 2.7 Consensus size: 39
22414306 TTCAAAACAT
* * * *
22414316 ATATTTAAGATGTCCTAAACTATGACATACTTAAAAACCC
1 ATATTAAAGATGTTC-AAATTATGACATAATTAAAAACCC
* * *
22414356 TTATTAAAGATGTTCAGATTATGACATAATT-AAAACTC
1 ATATTAAAGATGTTCAAATTATGACATAATTAAAAACCC
*
22414394 ATATTAATGATGTTCAAATTATGACA
1 ATATTAAAGATGTTCAAATTATGACA
22414420 ATTAAATACT
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
38 29 0.54
39 13 0.24
40 12 0.22
ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35
Consensus pattern (39 bp):
ATATTAAAGATGTTCAAATTATGACATAATTAAAAACCC
Found at i:22421845 original size:6 final size:6
Alignment explanation
Indices: 22421834--22421873 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
22421824 AATTCAAAAA
* *
22421834 AAAATC AAAATC AAAATC AAAAAC AAAATC AAAAAC AAAA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAA
22421874 AGAAGAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.75, C:0.15, G:0.00, T:0.10
Consensus pattern (6 bp):
AAAATC
Found at i:22421851 original size:12 final size:12
Alignment explanation
Indices: 22421827--22421873 Score: 78
Period size: 12 Copynumber: 4.0 Consensus size: 12
22421817 TAGATCCAAT
22421827 TCAAAAA-AAAA
1 TCAAAAACAAAA
*
22421838 TCAAAATCAAAA
1 TCAAAAACAAAA
22421850 TCAAAAACAAAA
1 TCAAAAACAAAA
22421862 TCAAAAACAAAA
1 TCAAAAACAAAA
22421874 AGAAGAAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
11 6 0.18
12 27 0.82
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.11
Consensus pattern (12 bp):
TCAAAAACAAAA
Found at i:22421860 original size:18 final size:18
Alignment explanation
Indices: 22421827--22421874 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
22421817 TAGATCCAAT
*
22421827 TCAAAAA-AAAATCAAAA
1 TCAAAAACAAAAACAAAA
*
22421844 TCAAAATCAAAAACAAAA
1 TCAAAAACAAAAACAAAA
22421862 TCAAAAACAAAAA
1 TCAAAAACAAAAA
22421875 GAAGAAAGAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 6 0.22
18 21 0.78
ACGTcount: A:0.75, C:0.15, G:0.00, T:0.10
Consensus pattern (18 bp):
TCAAAAACAAAAACAAAA
Found at i:22421874 original size:6 final size:6
Alignment explanation
Indices: 22421828--22421874 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
22421818 AGATCCAATT
* * * *
22421828 CAAAAA -AAAAT CAAAAT CAAAAT CAAAAA CAAAAT CAAAAA CAAAAA
1 CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA
22421875 GAAGAAAGAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
5 4 0.11
6 32 0.89
ACGTcount: A:0.77, C:0.15, G:0.00, T:0.09
Consensus pattern (6 bp):
CAAAAA
Found at i:22421942 original size:28 final size:28
Alignment explanation
Indices: 22421906--22421960 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
22421896 AATCAAAGTC
* *
22421906 AAAAGG-AAAATGGAAAAAAGAGAAGGAA
1 AAAAGGAAAAACGG-AAAAAGAAAAGGAA
22421934 AAAAGGAAAAACGGAAAAAGAAAAGGA
1 AAAAGGAAAAACGGAAAAAGAAAAGGA
22421961 GAGGCCAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.69, C:0.02, G:0.27, T:0.02
Consensus pattern (28 bp):
AAAAGGAAAAACGGAAAAAGAAAAGGAA
Found at i:22422832 original size:6 final size:7
Alignment explanation
Indices: 22422813--22422843 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
22422803 AAAAAAAATG
22422813 TGAAAAA
1 TGAAAAA
22422820 TGAAAAA
1 TGAAAAA
22422827 TGAAAAA
1 TGAAAAA
*
22422834 TAAAAAA
1 TGAAAAA
22422841 TGA
1 TGA
22422844 TGGAAAGGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.71, C:0.00, G:0.13, T:0.16
Consensus pattern (7 bp):
TGAAAAA
Found at i:22424139 original size:50 final size:50
Alignment explanation
Indices: 22424085--22424560 Score: 287
Period size: 50 Copynumber: 9.5 Consensus size: 50
22424075 GTAGTGGAAC
* *
22424085 AGATTAACA-CCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAA-AGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTGAAAA
* * * * * * * **
22424135 AGATTAAAGCTACAACAGCGAGTCTT-ATTCCCTAGAAAGTGCAGTGGAGT
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCC-CGACATTGCAGTGAAAA
* * * * * *
22424185 AGGTTAAAGCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTGAAAA
* * * * * * * * *
22424235 AGATTAAAGCTACCACAGCGAATCTTACTTCTCAGGCGA-CGCAGTGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGAC-ATTGCAGTGAAAA
* * * * * * *
22424285 AGATTAACGCCACAACGGTGAACCTCGGTTCCCCGACATTACAGTGAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTGAAAA
* * * * * * **
22424335 AGATTAAAGCTACAACAGCGAGTCTTAC-TCCCCAAGCAGTGCAGTGGAGC
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGA-CATTGCAGTGAAAA
* * * * * *
22424385 AGATTAAATCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTGAAAA
* * * * * * **** * *
22424435 AGATTAAAGCTACCACAGCGAATCTTACCTCTCAGGTGGTGCAATGGAACA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGT-GAAAA
* * * *
22424486 A-ATTAAAGCCACAACAGCGAATCATGCTTTCCTGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTGAAAA
**
22424535 AGATTAAAGCCACAATGGCGAATCTT
1 AGATTAAAGCCACAACAGCGAATCTT
22424561 ACTTTCCAAA
Statistics
Matches: 295, Mismatches: 122, Indels: 18
0.68 0.28 0.04
Matches are distributed among these distances:
49 17 0.06
50 262 0.89
51 16 0.05
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.22
Consensus pattern (50 bp):
AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCGACATTGCAGTGAAAA
Found at i:22424420 original size:200 final size:200
Alignment explanation
Indices: 22424077--22424563 Score: 690
Period size: 200 Copynumber: 2.4 Consensus size: 200
22424067 CTAGCGGTGT
* *
22424077 AGTGGAACAGATTAACACCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAACGCCACAACGGCGAA-CCTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* * * *
22424142 AGCTACAACAGCGAGTCTTA-TTCCCTAGAAAGTGCAGTGGAGTAGGTTAAAGCCACATCGGTGA
65 AGCTACAACAGCGAGTCTTACTCCCCAAGAAAGTGCAGTGGAGCAGATTAAAGCCACATCGGTGA
*
22424206 ATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACCACAGCGAATCTTACTTCTCAGG
130 ATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACCACAGCGAATCTTACCTCTCAGG
22424271 CGACGC
195 CGACGC
* * * *
22424277 AGTGGAACAGATTAACGCCACAACGGTGAACCTCGGTTCCCCGACATTACAGTGAAAAAGATTAA
1 AGTGGAACAGATTAACGCCACAACGGCGAACCT-GCTTCCCCGACATTGCAGTTAAAAAGATTAA
* *
22424342 AGCTACAACAGCGAGTCTTACTCCCCAAG-CAGTGCAGTGGAGCAGATTAAATCCACATCGGTGA
65 AGCTACAACAGCGAGTCTTACTCCCCAAGAAAGTGCAGTGGAGCAGATTAAAGCCACATCGGTGA
22424406 ATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACCACAGCGAATCTTACCTCTCAGG
130 ATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACCACAGCGAATCTTACCTCTCAGG
* **
22424471 TGGTGC
195 CGACGC
* * * * * * *
22424477 AATGGAACAAATTAAAGCCACAACAGCGAATCATGCTTTCCTGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAACGCCACAACGGCGAA-CCTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* ** *
22424542 AGCCACAATGGCGAATCTTACT
65 AGCTACAACAGCGAGTCTTACT
22424564 TTCCAAAGGT
Statistics
Matches: 253, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
199 2 0.01
200 243 0.96
201 8 0.03
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (200 bp):
AGTGGAACAGATTAACGCCACAACGGCGAACCTGCTTCCCCGACATTGCAGTTAAAAAGATTAAA
GCTACAACAGCGAGTCTTACTCCCCAAGAAAGTGCAGTGGAGCAGATTAAAGCCACATCGGTGAA
TCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCTACCACAGCGAATCTTACCTCTCAGGC
GACGC
Found at i:22424562 original size:100 final size:100
Alignment explanation
Indices: 22424077--22424562 Score: 561
Period size: 100 Copynumber: 4.9 Consensus size: 100
22424067 CTAGCGGTGT
* *
22424077 AGTGGAACAGATTAACA-CCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTA
1 AGTGGAACAGATTAA-AGCCACAACGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTA
* **
22424141 AAGCTACAACAGCGAGTCTTATTCC-CT-AGAAAGTGC
65 AAGCTACAACAGCGAATCTTA--CCTCTCAGGCAGTGC
** * *
22424177 AGTGGAGTAGGTTAAAGCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* * *
22424242 AGCTACCACAGCGAATCTTACTTCTCAGGC-GACGC
66 AGCTACAACAGCGAATCTTACCTCTCAGGCAG-TGC
* * * * *
22424277 AGTGGAACAGATTAACGCCACAACGGTGAACCTCGGTTCCCCGACATTACAGTGAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* * *
22424342 AGCTACAACAGCGAGTCTTA-CTCCCCAAGCAGTGC
66 AGCTACAACAGCGAATCTTACCT-CTCAGGCAGTGC
* * *
22424377 AGTGGAGCAGATTAAATCCACATCGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAA
* **
22424442 AGCTACCACAGCGAATCTTACCTCTCAGGTGGTGC
66 AGCTACAACAGCGAATCTTACCTCTCAGGCAGTGC
* * * * * *
22424477 AATGGAACAAATTAAAGCCACAACAGCGAATCAT-GCTTTCCTGACATTGCAGTTAAAAAGATTA
1 AGTGGAACAGATTAAAGCCACAACGGTGAATC-TCGCTTCCCCGACATTGCAGTTAAAAAGATTA
* **
22424541 AAGCCACAATGGCGAATCTTAC
65 AAGCTACAACAGCGAATCTTAC
22424563 TTTCCAAAGG
Statistics
Matches: 324, Mismatches: 54, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
98 1 0.00
99 5 0.02
100 314 0.97
101 4 0.01
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (100 bp):
AGTGGAACAGATTAAAGCCACAACGGTGAATCTCGCTTCCCCGACATTGCAGTTAAAAAGATTAA
AGCTACAACAGCGAATCTTACCTCTCAGGCAGTGC
Found at i:22426310 original size:14 final size:15
Alignment explanation
Indices: 22426284--22426312 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22426274 ATCCACATAC
22426284 TTTTATATCTATTTT
1 TTTTATATCTATTTT
22426299 TTTTATAT-TATTTT
1 TTTTATATCTATTTT
22426313 ATTCCTATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATATCTATTTT
Found at i:22429186 original size:45 final size:45
Alignment explanation
Indices: 22429135--22429510 Score: 212
Period size: 45 Copynumber: 8.3 Consensus size: 45
22429125 TCCCATCCAC
*
22429135 GGTCTTATTTATTTTCGGCATGATTCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTTCGGCATGATTCCATAGTGTCTTTCAACTAT
* * * *
22429180 GGTCTTATTCA-TTTC-CCATCATCTTCCTATAGTGCCTTTCAACCAT
1 GGTCTTATTCATTTTCGGCATGA--TTCC-ATAGTGTCTTTCAACTAT
* *
22429226 GGTCTTATTCATTTCACGTCATG-TTGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTT-TCGGCATGATT-CCATAGTGTCTTTCAACTAT
** **** * * *
22429272 GGTCTTACACATTTGAATCGTGATGCCATAGCGTCTTTCAACTAT
1 GGTCTTATTCATTTTCGGCATGATTCCATAGTGTCTTTCAACTAT
* * * * ****** * *
22429317 AGTCTTACTCGTCTGAATTGTGA-TCCATAATGTCTTTCAGCTAT
1 GGTCTTATTCATTTTCGGCATGATTCCATAGTGTCTTTCAACTAT
* * *
22429361 GGTCTTACTCA-TTTCTAGTATG-TTACCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTTC-GGCATGATT-CCATAGTGTCTTTCAACTAT
* * *
22429406 GGTTTTATTCATTTTCCGGTAT-AGTGCCATAGTGTCTTTCAACTAT
1 GGTCTTATTCATTTT-CGGCATGA-TTCCATAGTGTCTTTCAACTAT
* * * * * *
22429452 GATCTTATTTATTTCCGGTAT-AGTGT-TATAGTGCCTTTCAACTAT
1 GGTCTTATTCATTTTCGGCATGA-T-TCCATAGTGTCTTTCAACTAT
* *
22429497 GGTTTTAATCATTT
1 GGTCTTATTCATTT
22429511 CATTCAAGCC
Statistics
Matches: 264, Mismatches: 51, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
43 5 0.02
44 35 0.13
45 118 0.45
46 96 0.36
47 6 0.02
48 1 0.00
49 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.15, T:0.44
Consensus pattern (45 bp):
GGTCTTATTCATTTTCGGCATGATTCCATAGTGTCTTTCAACTAT
Found at i:22429219 original size:46 final size:45
Alignment explanation
Indices: 22429158--22429466 Score: 216
Period size: 46 Copynumber: 6.8 Consensus size: 45
22429148 TTCGGCATGA
*
22429158 TTCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCCCATCATC
1 TTCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCACATCATC
* * * *
22429203 TTCCTATAGTGCCTTTCAACCATGGTCTTATTCATTTCACGTCATG
1 TTCC-ATAGTGTCTTTCAACTATGGTCTTATTCATTTCACATCATC
** * * *
22429249 TTGCCATAGTGTCTTTCAACTATGGTCTTACACATTTGA-ATCGTGA
1 TT-CCATAGTGTCTTTCAACTATGGTCTTATTCATTTCACATCAT-C
* * * * * * * ** *
22429295 TGCCATAGCGTCTTTCAACTATAGTCTTACTCGTCTGA-ATTGTG
1 TTCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCACATCATC
* * * * * *
22429339 ATCCATAATGTCTTTCAGCTATGGTCTTACTCATTTCTA-GT-ATG
1 TTCCATAGTGTCTTTCAACTATGGTCTTATTCATTTC-ACATCATC
* * *
22429383 TTACCATAGTGTCTTTCAACTATGGTTTTATTCATTTTC-CGGT-ATAG
1 TT-CCATAGTGTCTTTCAACTATGGTCTTATTCA-TTTCAC-ATCAT-C
* * *
22429430 TGCCATAGTGTCTTTCAACTATGATCTTATTTATTTC
1 TTCCATAGTGTCTTTCAACTATGGTCTTATTCATTTC
22429467 CGGTATAGTG
Statistics
Matches: 214, Mismatches: 41, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
44 31 0.14
45 75 0.35
46 104 0.49
47 4 0.02
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (45 bp):
TTCCATAGTGTCTTTCAACTATGGTCTTATTCATTTCACATCATC
Found at i:22433567 original size:17 final size:19
Alignment explanation
Indices: 22433546--22433584 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 19
22433536 AATAGTCATA
22433546 ATTATTCAAGTAGATATTTT
1 ATTA-TCAAGTAGATATTTT
22433566 ATTCATCAAGTAGATATTT
1 ATT-ATCAAGTAGATATTT
22433585 ATTGAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (19 bp):
ATTATCAAGTAGATATTTT
Found at i:22436307 original size:19 final size:21
Alignment explanation
Indices: 22436256--22436300 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
22436246 AAATTTTAAA
*
22436256 AAAAAATAAAAATATTGACAT
1 AAAAAATTAAAATATTGACAT
*
22436277 AAAAAATTAAAATA-TGACAC
1 AAAAAATTAAAATATTGACAT
22436297 AAAA
1 AAAA
22436301 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.69, C:0.07, G:0.04, T:0.20
Consensus pattern (21 bp):
AAAAAATTAAAATATTGACAT
Found at i:22436308 original size:20 final size:22
Alignment explanation
Indices: 22436255--22436308 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 22
22436245 TAAATTTTAA
*
22436255 AAAAAAATAAAAATATTGACAT
1 AAAAAATTAAAAATATTGACAT
22436277 AAAAAATT-AAAATA-TGACA-
1 AAAAAATTAAAAATATTGACAT
* *
22436296 CAAAATTTAAAAA
1 AAAAAATTAAAAA
22436309 ATAAAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 6 0.21
20 9 0.32
21 6 0.21
22 7 0.25
ACGTcount: A:0.69, C:0.06, G:0.04, T:0.22
Consensus pattern (22 bp):
AAAAAATTAAAAATATTGACAT
Found at i:22436475 original size:9 final size:9
Alignment explanation
Indices: 22436416--22436482 Score: 53
Period size: 9 Copynumber: 7.2 Consensus size: 9
22436406 GTGAAATGAG
22436416 TTTATAATT
1 TTTATAATT
* *
22436425 TATATCATT
1 TTTATAATT
22436434 TTTATATATT
1 TTTATA-ATT
*
22436444 TTTAAAATT
1 TTTATAATT
* **
22436453 ATTGATGTTT
1 -TTTATAATT
22436463 TTTATAATT
1 TTTATAATT
*
22436472 TTTAAAATT
1 TTTATAATT
22436481 TT
1 TT
22436483 ATAGCTTTCC
Statistics
Matches: 43, Mismatches: 13, Indels: 4
0.72 0.22 0.07
Matches are distributed among these distances:
9 30 0.70
10 13 0.30
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTATAATT
Found at i:22436600 original size:8 final size:8
Alignment explanation
Indices: 22436581--22436637 Score: 53
Period size: 8 Copynumber: 6.6 Consensus size: 8
22436571 AAAGGTGAAT
22436581 TTTTATTAA
1 TTTTA-TAA
22436590 TTTTATAA
1 TTTTATAA
22436598 TTTTATAAA
1 TTTTAT-AA
22436607 TTATTAATAA
1 TT-TT-ATAA
*
22436617 TTTTCAT-T
1 TTTT-ATAA
22436625 TTTTATAA
1 TTTTATAA
22436633 TTTTA
1 TTTTA
22436638 AAACAATTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
7 2 0.05
8 18 0.44
9 13 0.32
10 6 0.15
11 2 0.05
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (8 bp):
TTTTATAA
Found at i:22436608 original size:27 final size:26
Alignment explanation
Indices: 22436578--22436636 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
22436568 TCCAAAGGTG
*
22436578 AATTTTTATTAATTTT-ATAATTTTAT
1 AATTTTTAATAATTTTCAT-ATTTTAT
* *
22436604 AAATTATTAATAATTTTCATTTTTTAT
1 AA-TTTTTAATAATTTTCATATTTTAT
22436631 AATTTT
1 AATTTT
22436637 AAAACAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
26 5 0.19
27 20 0.74
28 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (26 bp):
AATTTTTAATAATTTTCATATTTTAT
Found at i:22436618 original size:19 final size:17
Alignment explanation
Indices: 22436581--22436637 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
22436571 AAAGGTGAAT
*
22436581 TTTTATTAATTTTATAA
1 TTTTATAAATTTTATAA
22436598 TTTTATAAATTATTAATAA
1 TTTTATAAATT-TT-ATAA
*
22436617 TTTTCAT--TTTTTATAA
1 TTTT-ATAAATTTTATAA
22436633 TTTTA
1 TTTTA
22436638 AAACAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
15 1 0.03
16 8 0.23
17 12 0.34
18 4 0.11
19 8 0.23
20 2 0.06
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTATAAATTTTATAA
Found at i:22443753 original size:31 final size:31
Alignment explanation
Indices: 22443718--22443793 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
22443708 TTAACTATTC
*
22443718 AGTGACTAAAATGTTACAACGCGATAACGTA
1 AGTGACTAAAATGTTACAACGCAATAACGTA
* *
22443749 AGTGACTAAAATGTTACAATGCAATAATGTA
1 AGTGACTAAAATGTTACAACGCAATAACGTA
*
22443780 ATTGACTAAAATGT
1 AGTGACTAAAATGT
22443794 AGCATGAGAT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (31 bp):
AGTGACTAAAATGTTACAACGCAATAACGTA
Found at i:22444379 original size:25 final size:29
Alignment explanation
Indices: 22444321--22444384 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
22444311 TTTAAAATTT
22444321 AAAATCAATTTAAAATAAAATCATAATAAA
1 AAAATCAATTTAAAATAAAATCATAAT-AA
*
22444351 AAAATTAATTTAAAAT-AAAT-A-AAT-A
1 AAAATCAATTTAAAATAAAATCATAATAA
22444376 AAAATCAAT
1 AAAATCAAT
22444385 ATGTTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 9 0.28
27 3 0.09
28 1 0.03
29 4 0.12
30 15 0.47
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (29 bp):
AAAATCAATTTAAAATAAAATCATAATAA
Found at i:22445536 original size:24 final size:23
Alignment explanation
Indices: 22445509--22445553 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
22445499 ATAACACAAG
* *
22445509 ATTTACACGAGAAAAAGAATGAAA
1 ATTTACAC-ACAAAAAAAATGAAA
22445533 ATTTACACACAAAAAAAATGA
1 ATTTACACACAAAAAAAATGA
22445554 TGCTTTGCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.60, C:0.11, G:0.11, T:0.18
Consensus pattern (23 bp):
ATTTACACACAAAAAAAATGAAA
Found at i:22446236 original size:14 final size:15
Alignment explanation
Indices: 22446217--22446249 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
22446207 AAACAATGAA
*
22446217 AAATTA-AAAAGAAT
1 AAATTACAAAAAAAT
22446231 AAATTACAAAAAAAT
1 AAATTACAAAAAAAT
22446246 AAAT
1 AAAT
22446250 ATATAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (15 bp):
AAATTACAAAAAAAT
Found at i:22446257 original size:16 final size:16
Alignment explanation
Indices: 22446221--22446258 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
22446211 AATGAAAAAT
22446221 TAAAAAGAATAAATTA
1 TAAAAAGAATAAATTA
*
22446237 CAAAAA-AATAAATATA
1 TAAAAAGAATAAAT-TA
22446253 TAAAAA
1 TAAAAA
22446259 TTATGCCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (16 bp):
TAAAAAGAATAAATTA
Found at i:22446322 original size:23 final size:23
Alignment explanation
Indices: 22446287--22446363 Score: 64
Period size: 23 Copynumber: 3.2 Consensus size: 23
22446277 TATACTATTG
* *
22446287 AATAAAAGAATAAATTTATTTAA
1 AATAAATGTATAAATTTATTTAA
* *
22446310 AATAAATGTATAACTTTTTTGCTAATA
1 AATAAATGTATAAATTTATT--T-A-A
* *
22446337 AATAAATGTAGAAATTTCTTTAA
1 AATAAATGTATAAATTTATTTAA
22446360 AATA
1 AATA
22446364 TATTATTTAA
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
23 21 0.49
24 1 0.02
25 2 0.05
26 1 0.02
27 18 0.42
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (23 bp):
AATAAATGTATAAATTTATTTAA
Found at i:22467546 original size:18 final size:18
Alignment explanation
Indices: 22467518--22467555 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
22467508 AACTTGAAAC
22467518 AAATCAGAAAATTTTAGAA
1 AAATCAGAAAATTTT-GAA
22467537 AAAT-AGAAAATTTTGAA
1 AAATCAGAAAATTTTGAA
22467554 AA
1 AA
22467556 CAGGGGTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 10 0.53
19 4 0.21
ACGTcount: A:0.61, C:0.03, G:0.11, T:0.26
Consensus pattern (18 bp):
AAATCAGAAAATTTTGAA
Found at i:22478116 original size:54 final size:54
Alignment explanation
Indices: 22478031--22478140 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
22478021 ATCTAAATGT
*
22478031 TAAAATTTCTTAACCAAATTTTAATATGACTCTAAGGACCTTAATATTTACGAA
1 TAAAATTTCTTAACCAAATTTTAATACGACTCTAAGGACCTTAATATTTACGAA
22478085 TAAAATTTCTTAACCAAATTTTAATACGACTCTAAGGACCTTAATATTTACGAA
1 TAAAATTTCTTAACCAAATTTTAATACGACTCTAAGGACCTTAATATTTACGAA
22478139 TA
1 TA
22478141 CACACATCGA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.36
Consensus pattern (54 bp):
TAAAATTTCTTAACCAAATTTTAATACGACTCTAAGGACCTTAATATTTACGAA
Found at i:22481150 original size:24 final size:24
Alignment explanation
Indices: 22481101--22481150 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
22481091 GCCACAGGAT
*
22481101 ATTTCAACATTAACTAGAGAGTAA
1 ATTTCAACATTAACTAGAGAGCAA
*
22481125 ATTTCAACATTAATTTAG-GAGCAA
1 ATTTCAACATTAA-CTAGAGAGCAA
22481149 AT
1 AT
22481151 AGTTAATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (24 bp):
ATTTCAACATTAACTAGAGAGCAA
Found at i:22485629 original size:6 final size:7
Alignment explanation
Indices: 22485603--22485635 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
22485593 AATGTATATA
22485603 AATTTAT
1 AATTTAT
22485610 AATTTAT
1 AATTTAT
22485617 AATTTAT
1 AATTTAT
22485624 -ATTTAT
1 AATTTAT
22485630 -ATTTAT
1 AATTTAT
22485636 TATATTGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 12 0.46
7 14 0.54
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
AATTTAT
Found at i:22489730 original size:30 final size:28
Alignment explanation
Indices: 22489684--22489763 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 28
22489674 GTATACACAT
* *
22489684 TAAAAATATGAAAAATAAAAATAAATATA
1 TAAAAAAATTAAAAATAAAAATAAAT-TA
* *
22489713 TAAACAAAATTAGAAATATATATATAAATTA
1 TAAA-AAAATTA-AAA-ATAAAAATAAATTA
*
22489744 TAAAAAATTTAAAAATAAAA
1 TAAAAAAATTAAAAATAAAA
22489764 TTTAAAAAAC
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
28 4 0.10
29 7 0.17
30 11 0.27
31 9 0.22
32 10 0.24
ACGTcount: A:0.69, C:0.01, G:0.03, T:0.28
Consensus pattern (28 bp):
TAAAAAAATTAAAAATAAAAATAAATTA
Found at i:22489772 original size:14 final size:13
Alignment explanation
Indices: 22489747--22489771 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22489737 TAAATTATAA
22489747 AAAATTTAAAAAT
1 AAAATTTAAAAAT
22489760 AAAATTTAAAAA
1 AAAATTTAAAAA
22489772 ACCTACAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTTAAAAAT
Found at i:22493539 original size:5 final size:5
Alignment explanation
Indices: 22493529--22493554 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
22493519 ACAAACAACC
22493529 AATCA AATCA AATCA AATCA AATCA A
1 AATCA AATCA AATCA AATCA AATCA A
22493555 TTTCACTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AATCA
Found at i:22495786 original size:5 final size:5
Alignment explanation
Indices: 22495744--22495812 Score: 60
Period size: 5 Copynumber: 14.4 Consensus size: 5
22495734 ATGTTTTAAA
22495744 TATAT TA-A- TATAT TAT-T T-TAT TATAT AATATAT TATAT TATAT TA-AT
1 TATAT TATAT TATAT TATAT TATAT TATAT --TATAT TATAT TATAT TATAT
*
22495791 TATAT TATGT TAT-T ATATAT TA
1 TATAT TATAT TATAT -TATAT TA
22495813 AATAAACTAA
Statistics
Matches: 54, Mismatches: 1, Indels: 18
0.74 0.01 0.25
Matches are distributed among these distances:
3 3 0.06
4 11 0.20
5 34 0.63
6 1 0.02
7 5 0.09
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:22495804 original size:22 final size:20
Alignment explanation
Indices: 22495744--22495808 Score: 82
Period size: 20 Copynumber: 3.2 Consensus size: 20
22495734 ATGTTTTAAA
22495744 TATATTAATATATTATTTTAT
1 TATATTAATATATTA-TTTAT
22495765 TATA-TAATATATTA--TAT
1 TATATTAATATATTATTTAT
22495782 TATATTAATTATATTATGTTAT
1 TATATTAA-TATATTAT-TTAT
22495804 TATAT
1 TATAT
22495809 ATTAAATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
17 7 0.18
18 3 0.08
19 7 0.18
20 10 0.26
21 4 0.10
22 8 0.21
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (20 bp):
TATATTAATATATTATTTAT
Found at i:22496438 original size:23 final size:24
Alignment explanation
Indices: 22496403--22496447 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
22496393 AATATGACAA
* *
22496403 GAAATTAAGTAGAAAAG-AAGTAT
1 GAAATAAACTAGAAAAGTAAGTAT
22496426 GAAATAAACTAGAAAAGTAAGT
1 GAAATAAACTAGAAAAGTAAGT
22496448 GAGCTTAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.58, C:0.02, G:0.20, T:0.20
Consensus pattern (24 bp):
GAAATAAACTAGAAAAGTAAGTAT
Found at i:22496924 original size:41 final size:39
Alignment explanation
Indices: 22496879--22496967 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 39
22496869 AGCGGCGTTT
* * * * *
22496879 TTAGCGGCGGTTGGATAAAAAACGCCGCTAAAGATCGATCA
1 TTAGCGGCGCTTAG-TAAAAAACGCCGCTAAAAAT-AAGCA
**
22496920 TTAGCGGCGCTTAGTCGAAAACGCCGCTAAAAATAAGCA
1 TTAGCGGCGCTTAGTAAAAAACGCCGCTAAAAATAAGCA
22496959 TTAGCGGCG
1 TTAGCGGCG
22496968 TTTTTCAGAA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 12 0.29
40 17 0.41
41 12 0.29
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (39 bp):
TTAGCGGCGCTTAGTAAAAAACGCCGCTAAAAATAAGCA
Found at i:22497116 original size:113 final size:113
Alignment explanation
Indices: 22496959--22497229 Score: 416
Period size: 113 Copynumber: 2.4 Consensus size: 113
22496949 AAAATAAGCA
* * ** * *
22496959 TTAGCGGCGTTTTTCAGAAAGTGCCGCAAAGTACCTAAGCCCAACGATGTCATTTTCCGAGCTTT
1 TTAGCGGCATTTTTGAGAAAGTGCCGCAAAAAACCTAAGCCCAACGACGCCATTTTCCGAGCTTT
22497024 CAGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAGGGCT
66 CAGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAGGGCT
* *
22497072 TTAGCGGCATTTTTGAGAAAGTGCCACAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTT
1 TTAGCGGCATTTTTGAGAAAGTGCCGCAAAAAACCTAAGCCCAACGACGCCATTTTCCGAGCTTT
* *
22497137 CGGGGATTTAGTGGCGTTTTTAATAAAGCGCCGCTAATGCTCAGGGCT
66 CAGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAGGGCT
* * *
22497185 TTCGCGGCATTTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAA
1 TTAGCGGCATTTTTGAGAAAGTGCCGCAAAAA-ACCTAAGCCCAA
22497230 TGACAAAAAT
Statistics
Matches: 143, Mismatches: 14, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
113 131 0.92
114 12 0.08
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (113 bp):
TTAGCGGCATTTTTGAGAAAGTGCCGCAAAAAACCTAAGCCCAACGACGCCATTTTCCGAGCTTT
CAGGGATTTAGCGGCGTTTTTAATAAAGCGCCGCTAATGCTCAGGGCT
Found at i:22497236 original size:22 final size:22
Alignment explanation
Indices: 22497211--22497256 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
22497201 GAAAGCGCCG
22497211 CAAAAATACCTAAGCCCAATGA
1 CAAAAATACCTAAGCCCAATGA
22497233 CAAAAATACCTAAGCCCAATGA
1 CAAAAATACCTAAGCCCAATGA
22497255 CA
1 CA
22497257 CCGTTTTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.50, C:0.28, G:0.09, T:0.13
Consensus pattern (22 bp):
CAAAAATACCTAAGCCCAATGA
Found at i:22497485 original size:114 final size:114
Alignment explanation
Indices: 22497285--22497619 Score: 571
Period size: 114 Copynumber: 2.9 Consensus size: 114
22497275 TTCGCTGCGT
* *
22497285 TTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAATGACACCGTTTTCTGAGCTTTCAGGGATTT
1 TTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACACCGTTTTCTGAGCTTTCGGGGATTT
22497350 AGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGTGCTTTAGCAGTGC
66 AGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGTGCTTTAGCAGTGC
* * * *
22497399 TTTTGGGAAAGCGCTGCAAAAATACCTAAGTCCAACGACGCTGTTTTCTGAGCTTTCGGGGATTT
1 TTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACACCGTTTTCTGAGCTTTCGGGGATTT
* * * *
22497464 AGTGACGTTTTTAAGTAAGCGCAGCTAATGCTCAGTGCTTTAGCGGTGT
66 AGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGTGCTTTAGCAGTGC
22497513 TTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACACCGTTTTCTGAGCTTTCGGGGATTT
1 TTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACACCGTTTTCTGAGCTTTCGGGGATTT
*
22497578 AGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTA
66 AGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGTGCTTTA
22497620 AAATAATTTA
Statistics
Matches: 204, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 204 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (114 bp):
TTTTGGGAAAGCGCCGCAAAAATACCTAAGCCCAACGACACCGTTTTCTGAGCTTTCGGGGATTT
AGTGGCGTTTTTAAGTAAGCGCCGCTAATGCTCAGTGCTTTAGCAGTGC
Found at i:22498388 original size:89 final size:88
Alignment explanation
Indices: 22498295--22498528 Score: 265
Period size: 96 Copynumber: 2.5 Consensus size: 88
22498285 TTAGGTTAGA
* *
22498295 GTTTAGGGTTTAGATTAATTAGTGTGTTTTAA-TTATATATTAAATAAGGTTTAGGGGTTAGGGG
1 GTTTAGGGTTTAGATTAATTAGTGT-TTTTAATTTATATATTAAATAAGGGTTAGGGGTTAGGAG
22498359 TTAGGGATTTAGGGTCGGGTTTAAG
65 TTAGGGATTTAGGGTCGGG-TTAAG
*
22498384 GTTTAGGAG-TTAGATTAATTAATGTTTTTTAATTTATATATTAAATAAAGTTTAAGGGTTAGGG
1 GTTTAGG-GTTTAGATTAATTAGTG-TTTTTAATTTATATA-T---TAAA---TAAGGGTTAGGG
* *
22498448 GTTAGGAGTTAGGGATTTGGGGTCGGGTTAGG
57 GTTAGGAGTTAGGGATTTAGGGTCGGGTTAAG
* * * *
22498480 GTTTAAGATTTAGATTAATTAGTACTTTTTAATTTATTTATTAAATAAG
1 GTTTAGGGTTTAGATTAATTAGT-GTTTTTAATTTATATATTAAATAAG
22498529 TTCTTTATAT
Statistics
Matches: 123, Mismatches: 10, Indels: 24
0.78 0.06 0.15
Matches are distributed among these distances:
89 31 0.25
90 9 0.07
91 1 0.01
92 4 0.03
94 4 0.03
95 1 0.01
96 37 0.30
97 36 0.29
ACGTcount: A:0.29, C:0.01, G:0.26, T:0.43
Consensus pattern (88 bp):
GTTTAGGGTTTAGATTAATTAGTGTTTTTAATTTATATATTAAATAAGGGTTAGGGGTTAGGAGT
TAGGGATTTAGGGTCGGGTTAAG
Found at i:22498471 original size:97 final size:96
Alignment explanation
Indices: 22498339--22498527 Score: 279
Period size: 96 Copynumber: 2.0 Consensus size: 96
22498329 ATATATTAAA
* * *
22498339 TAAGGTTTAGGGGTTAGGGGTTAGGGATTTAGGGTCGGGTTTAAGGTTTAGGAGTTAGATTAATT
1 TAAGGGTTAGGGGTTAGGAGTTAGGGATTTAGGGTCGGG-TTAAGGTTTAAGAGTTAGATTAATT
**
22498404 AATGTTTTTTAATTTATATATTAAATAAAGTT
65 AATACTTTTTAATTTATATATTAAATAAAGTT
* * *
22498436 TAAGGGTTAGGGGTTAGGAGTTAGGGATTTGGGGTCGGGTTAGGGTTTAAGATTTAGATTAATTA
1 TAAGGGTTAGGGGTTAGGAGTTAGGGATTTAGGGTCGGGTTAAGGTTTAAGAGTTAGATTAATTA
* *
22498501 GTACTTTTTAATTTATTTATTAAATAA
66 ATACTTTTTAATTTATATATTAAATAA
22498528 GTTCTTTATA
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
96 46 0.56
97 36 0.44
ACGTcount: A:0.29, C:0.02, G:0.28, T:0.42
Consensus pattern (96 bp):
TAAGGGTTAGGGGTTAGGAGTTAGGGATTTAGGGTCGGGTTAAGGTTTAAGAGTTAGATTAATTA
ATACTTTTTAATTTATATATTAAATAAAGTT
Found at i:22498607 original size:21 final size:21
Alignment explanation
Indices: 22498554--22498607 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
22498544 TAAAGATTAT
22498554 TAATTTAAAA-TTGATATGCAA
1 TAATTTAAAATTTGATAT-CAA
*
22498575 T-ATATAATAATTTGAATAT-AA
1 TAATTTAA-AATTTG-ATATCAA
22498596 TAATTTAAAATT
1 TAATTTAAAATT
22498608 GTAAAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
20 5 0.19
21 10 0.37
22 8 0.30
23 4 0.15
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.43
Consensus pattern (21 bp):
TAATTTAAAATTTGATATCAA
Found at i:22498616 original size:9 final size:9
Alignment explanation
Indices: 22498602--22498658 Score: 82
Period size: 9 Copynumber: 6.4 Consensus size: 9
22498592 ATAATAATTT
22498602 AAAATTGTA
1 AAAATTGTA
22498611 AAAATTGT-
1 AAAATTGTA
22498619 AAAATTGT-
1 AAAATTGTA
22498627 AAAATTGTAA
1 AAAATTGT-A
22498637 AAAATTGTA
1 AAAATTGTA
*
22498646 AAAATTATA
1 AAAATTGTA
22498655 AAAA
1 AAAA
22498659 ATAAAATTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
8 16 0.36
9 21 0.47
10 8 0.18
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.32
Consensus pattern (9 bp):
AAAATTGTA
Found at i:22498622 original size:8 final size:8
Alignment explanation
Indices: 22498597--22498648 Score: 70
Period size: 8 Copynumber: 6.2 Consensus size: 8
22498587 TGAATATAAT
22498597 AATT-TAA
1 AATTGTAA
22498604 AATTGTAAA
1 AATTGT-AA
22498613 AATTGTAA
1 AATTGTAA
22498621 AATTGTAA
1 AATTGTAA
22498629 AATTGTAAAA
1 AATTGT--AA
22498639 AATTGTAA
1 AATTGTAA
22498647 AA
1 AA
22498649 ATTATAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.10
8 21 0.51
9 8 0.20
10 8 0.20
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.35
Consensus pattern (8 bp):
AATTGTAA
Found at i:22498663 original size:26 final size:26
Alignment explanation
Indices: 22498610--22498664 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
22498600 TTAAAATTGT
* **
22498610 AAAAATTGTAAAATTGTAAAATTGTA
1 AAAAATTGTAAAATTATAAAATAATA
22498636 AAAAATTGTAAAAATTATAAAA-AATA
1 AAAAATTGT-AAAATTATAAAATAATA
22498662 AAA
1 AAA
22498665 TTAAAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (26 bp):
AAAAATTGTAAAATTATAAAATAATA
Found at i:22498676 original size:19 final size:20
Alignment explanation
Indices: 22498654--22498705 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
22498644 TAAAAATTAT
22498654 AAAAAATAAAATTA-AAATA
1 AAAAAATAAAATTAGAAATA
*
22498673 AAAAAATAAAA-AAGAAATA
1 AAAAAATAAAATTAGAAATA
*
22498692 AAAACACTAAAATT
1 AAAA-AATAAAATT
22498706 TTTATTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 20 0.74
20 6 0.22
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (20 bp):
AAAAAATAAAATTAGAAATA
Found at i:22498761 original size:46 final size:47
Alignment explanation
Indices: 22498692--22498787 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 47
22498682 AAAAGAAATA
** * *
22498692 AAAACACTAAAATTTTTATTTTTACCTAATTTTTATAAATATTACTT
1 AAAACACTAAAATTGATAATTTTACCTAATTTTTATAAATATTACCT
*
22498739 AAAA-ACTAAAATTGATAATTTTATCTAATTTTTATAAATATTACCT
1 AAAACACTAAAATTGATAATTTTACCTAATTTTTATAAATATTACCT
22498785 AAA
1 AAA
22498788 CAAAACTATG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
46 40 0.91
47 4 0.09
ACGTcount: A:0.45, C:0.09, G:0.01, T:0.45
Consensus pattern (47 bp):
AAAACACTAAAATTGATAATTTTACCTAATTTTTATAAATATTACCT
Found at i:22500076 original size:21 final size:21
Alignment explanation
Indices: 22500033--22500079 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
22500023 TTAAATTTGA
* *
22500033 AATTTTACAATTTAATCATCT
1 AATTTTACAATATAATCAACT
* *
22500054 AATTTTACAATATCATTAACT
1 AATTTTACAATATAATCAACT
22500075 AATTT
1 AATTT
22500080 AAATAGTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (21 bp):
AATTTTACAATATAATCAACT
Found at i:22501047 original size:8 final size:8
Alignment explanation
Indices: 22501034--22501064 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
22501024 CCTCATGAAG
22501034 GCCTTGTT
1 GCCTTGTT
22501042 GCCTTGTT
1 GCCTTGTT
22501050 GCCTTGTT
1 GCCTTGTT
*
22501058 GCATTGT
1 GCCTTGT
22501065 AGGCCCGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.48
Consensus pattern (8 bp):
GCCTTGTT
Found at i:22501366 original size:29 final size:29
Alignment explanation
Indices: 22501333--22501474 Score: 112
Period size: 32 Copynumber: 4.7 Consensus size: 29
22501323 AAAAATGTCC
22501333 AACTTAATAACTTATATAATTCACATAAT
1 AACTTAATAACTTATATAATTCACATAAT
* *
22501362 AACTTACATAACAACTTA-ACAACTCACATAATT
1 AACTTA-AT---AACTTATATAATTCACATAA-T
* * *
22501395 TACATAAT-ACATATATATATGTCATACCAT-AT
1 AACTTAATAACTTATATA-AT-TC--A-CATAAT
22501427 AACTTAATAACTTATATAATTCACATAAT
1 AACTTAATAACTTATATAATTCACATAAT
22501456 AACTTACATAACTTA-ATAA
1 AACTTA-ATAACTTATATAA
22501475 CTTAACAACT
Statistics
Matches: 89, Mismatches: 10, Indels: 28
0.70 0.08 0.22
Matches are distributed among these distances:
28 7 0.08
29 21 0.24
30 11 0.12
31 4 0.04
32 22 0.25
33 21 0.24
34 3 0.03
ACGTcount: A:0.48, C:0.17, G:0.01, T:0.35
Consensus pattern (29 bp):
AACTTAATAACTTATATAATTCACATAAT
Found at i:22501438 original size:8 final size:8
Alignment explanation
Indices: 22501425--22501508 Score: 59
Period size: 8 Copynumber: 10.5 Consensus size: 8
22501415 GTCATACCAT
22501425 ATAACTTA
1 ATAACTTA
22501433 ATAACTTA
1 ATAACTTA
*
22501441 TATAA-TTC
1 -ATAACTTA
*
22501449 A-CA-T-A
1 ATAACTTA
22501454 ATAACTTA
1 ATAACTTA
22501462 CATAACTTA
1 -ATAACTTA
22501471 ATAACTTA
1 ATAACTTA
* *
22501479 ACAACTCA
1 ATAACTTA
*
22501487 CATAATTTA
1 -ATAACTTA
22501496 CATAACTTA
1 -ATAACTTA
22501505 ATAA
1 ATAA
22501509 TTTTAAAATA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
5 1 0.02
6 3 0.05
7 2 0.03
8 29 0.48
9 25 0.42
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.35
Consensus pattern (8 bp):
ATAACTTA
Found at i:22501445 original size:17 final size:17
Alignment explanation
Indices: 22501425--22501508 Score: 64
Period size: 17 Copynumber: 4.7 Consensus size: 17
22501415 GTCATACCAT
*
22501425 ATAACTTAATAACTTAT
1 ATAACTTAATAACTTAC
22501442 ATAA-TTCACATAATAACTTAC
1 ATAACTT-A-AT---AACTTAC
22501463 ATAACTTAATAACTTA-
1 ATAACTTAATAACTTAC
* * *
22501479 ACAACTCACATAATTTAC
1 ATAACTTA-ATAACTTAC
22501497 ATAACTTAATAA
1 ATAACTTAATAA
22501509 TTTTAAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
16 8 0.15
17 22 0.42
18 8 0.15
20 2 0.04
21 11 0.21
22 2 0.04
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAACTTAATAACTTAC
Found at i:22501466 original size:9 final size:8
Alignment explanation
Indices: 22501452--22501508 Score: 60
Period size: 9 Copynumber: 6.8 Consensus size: 8
22501442 ATAATTCACA
22501452 TAATAACT
1 TAATAACT
22501460 TACATAACT
1 TA-ATAACT
22501469 TAATAACT
1 TAATAACT
*
22501477 TAACAACT
1 TAATAACT
* *
22501485 CACATAATT
1 TA-ATAACT
22501494 TACATAACT
1 TA-ATAACT
22501503 TAATAA
1 TAATAA
22501509 TTTTAAAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
8 20 0.49
9 21 0.51
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (8 bp):
TAATAACT
Found at i:22501484 original size:25 final size:26
Alignment explanation
Indices: 22501456--22501505 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
22501446 TTCACATAAT
*
22501456 AACTTACATAACTTA-ATAACTTAAC
1 AACTCACATAACTTACATAACTTAAC
*
22501481 AACTCACATAATTTACATAACTTAA
1 AACTCACATAACTTACATAACTTAA
22501506 TAATTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (26 bp):
AACTCACATAACTTACATAACTTAAC
Found at i:22501502 original size:34 final size:36
Alignment explanation
Indices: 22501425--22501508 Score: 118
Period size: 34 Copynumber: 2.3 Consensus size: 36
22501415 GTCATACCAT
* *
22501425 ATAACTTAATAACTTATATAATTCACATAATAACTTAC
1 ATAACTTAATAACTTATACAACTCACATAAT-A-TTAC
22501463 ATAACTTAATAACTTA-ACAACTCACATAAT-TTAC
1 ATAACTTAATAACTTATACAACTCACATAATATTAC
22501497 ATAACTTAATAA
1 ATAACTTAATAA
22501509 TTTTAAAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
34 16 0.36
37 12 0.27
38 16 0.36
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.35
Consensus pattern (36 bp):
ATAACTTAATAACTTATACAACTCACATAATATTAC
Found at i:22501511 original size:17 final size:17
Alignment explanation
Indices: 22501452--22501508 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 17
22501442 ATAATTCACA
22501452 TAATAACTTACATAACT
1 TAATAACTTACATAACT
*
22501469 TAATAACTTA-ACAACT
1 TAATAACTTACATAACT
* *
22501485 CACATAATTTACATAACT
1 TA-ATAACTTACATAACT
22501503 TAATAA
1 TAATAA
22501509 TTTTAAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 6 0.18
17 21 0.64
18 6 0.18
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (17 bp):
TAATAACTTACATAACT
Found at i:22501626 original size:17 final size:17
Alignment explanation
Indices: 22501604--22501675 Score: 58
Period size: 17 Copynumber: 4.2 Consensus size: 17
22501594 ATAACTCACA
22501604 TAATAACTTACATAACT
1 TAATAACTTACATAACT
*
22501621 TAATAACTTATATATA-T
1 TAATAACTTACATA-ACT
**
22501638 GCATAACTTA-ATAACT
1 TAATAACTTACATAACT
* * *
22501654 CATATTATTTACATAACT
1 TA-ATAACTTACATAACT
22501672 TAAT
1 TAAT
22501676 CATTGTAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
15 1 0.02
16 4 0.09
17 30 0.70
18 8 0.19
ACGTcount: A:0.44, C:0.14, G:0.01, T:0.40
Consensus pattern (17 bp):
TAATAACTTACATAACT
Found at i:22501648 original size:25 final size:26
Alignment explanation
Indices: 22501612--22501675 Score: 94
Period size: 25 Copynumber: 2.5 Consensus size: 26
22501602 CATAATAACT
*
22501612 TACATAACTTAATAACTTATA-TATA
1 TACATAACTTAATAACTCATATTATA
* *
22501637 TGCATAACTTAATAACTCATATTATT
1 TACATAACTTAATAACTCATATTATA
22501663 TACATAACTTAAT
1 TACATAACTTAAT
22501676 CATTGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 19 0.56
26 15 0.44
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (26 bp):
TACATAACTTAATAACTCATATTATA
Found at i:22501788 original size:28 final size:28
Alignment explanation
Indices: 22501747--22501827 Score: 144
Period size: 28 Copynumber: 2.9 Consensus size: 28
22501737 ATACATAACT
* *
22501747 TTTCAACTATTTTATATGTGCTGTTTTA
1 TTTCAACTACTTTATATGTGTTGTTTTA
22501775 TTTCAACTACTTTATATGTGTTGTTTTA
1 TTTCAACTACTTTATATGTGTTGTTTTA
22501803 TTTCAACTACTTTATATGTGTTGTT
1 TTTCAACTACTTTATATGTGTTGTT
22501828 ATTGTTGTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.57
Consensus pattern (28 bp):
TTTCAACTACTTTATATGTGTTGTTTTA
Found at i:22502274 original size:43 final size:43
Alignment explanation
Indices: 22502209--22502322 Score: 156
Period size: 43 Copynumber: 2.6 Consensus size: 43
22502199 CACCAAACAA
* *
22502209 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGGCCTT
1 TAGCGGCATTTGTGGAAAAAGCGCCGCTAAAGAACATGGCCTT
* *
22502252 TAGTGGCATTTGTGGAAAAAGCGCCACTAAAGAACATGGCCTT
1 TAGCGGCATTTGTGGAAAAAGCGCCGCTAAAGAACATGGCCTT
* * *
22502295 TAGCGGCGTTTGTAGAAATAAACGCCGC
1 TAGCGGCATTTGTGGAAA-AAGCGCCGC
22502323 AAACGTTAGC
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
43 54 0.89
44 7 0.11
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (43 bp):
TAGCGGCATTTGTGGAAAAAGCGCCGCTAAAGAACATGGCCTT
Found at i:22509471 original size:12 final size:12
Alignment explanation
Indices: 22509454--22509478 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22509444 ATTTAATCAC
22509454 TTTAATATTAAA
1 TTTAATATTAAA
22509466 TTTAATATTAAA
1 TTTAATATTAAA
22509478 T
1 T
22509479 CTATTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:22509550 original size:31 final size:34
Alignment explanation
Indices: 22509480--22509567 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 34
22509470 ATATTAAATC
22509480 TATTAAATTAATAGAATATTTATCTATAAGATAAA
1 TATTAAATTAATAGAATA-TTATCTATAAGATAAA
**
22509515 TATTAAATTAATA-AA-A-TA-CTATCAAGATACG
1 TATTAAATTAATAGAATATTATCTAT-AAGATAAA
*
22509546 TATTAAATTAATATTAATATTA
1 TATTAAATTAATA-GAATATTA
22509568 AAATTATTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
30 4 0.09
31 21 0.46
33 3 0.07
34 3 0.07
35 15 0.33
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (34 bp):
TATTAAATTAATAGAATATTATCTATAAGATAAA
Found at i:22509891 original size:13 final size:13
Alignment explanation
Indices: 22509873--22509897 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22509863 ATTTTCTATC
22509873 TCAAGTTCAATTT
1 TCAAGTTCAATTT
22509886 TCAAGTTCAATT
1 TCAAGTTCAATT
22509898 ACCCATTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (13 bp):
TCAAGTTCAATTT
Found at i:22509971 original size:14 final size:15
Alignment explanation
Indices: 22509949--22509985 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
22509939 AAATATCATA
22509949 TTAATTTTAATTAAT
1 TTAATTTTAATTAAT
22509964 TT-ATTTT-ATTAAT
1 TTAATTTTAATTAAT
22509977 TTAATTTTA
1 TTAATTTTA
22509986 CTTTATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 8 0.40
14 10 0.50
15 2 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTAATTTTAATTAAT
Found at i:22512778 original size:11 final size:11
Alignment explanation
Indices: 22512762--22512786 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22512752 GTTTTAGATG
22512762 TTTTATTATTA
1 TTTTATTATTA
22512773 TTTTATTATTA
1 TTTTATTATTA
22512784 TTT
1 TTT
22512787 GCATATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTATTATTA
Found at i:22513298 original size:15 final size:15
Alignment explanation
Indices: 22513273--22513307 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
22513263 GACTCTATTT
*
22513273 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
22513287 TAATTAATATTAAGA
1 TAATTAATATTAAGA
22513302 TAATTA
1 TAATTA
22513308 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:22518581 original size:51 final size:51
Alignment explanation
Indices: 22518526--22518659 Score: 171
Period size: 51 Copynumber: 2.6 Consensus size: 51
22518516 AAAGTGATGG
* **
22518526 TCACGTGTGTAGCACTATGTGCAGGCTACTATGTGTACCGGAT-AGTTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATGA-TAATGA
* * * * *
22518577 TCACGTGTGTAGTACTATGCGCAAGCTACTACGTGTATCGGATGATAATGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATGATAATGA
*
22518628 TCACATGTGTAGTACTATGTGCAGGCTACTAT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTAT
22518660 ATGAACCGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
51 69 0.99
52 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATGATAATGA
Found at i:22518722 original size:45 final size:45
Alignment explanation
Indices: 22518671--22518756 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
22518661 TGAACCGAAC
* * *
22518671 ATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCAGAT
1 ATCATTGATTAATAACGTGGTTGCTATGTGCTGAATCCACCAGAT
22518716 ATCATTGATTAATAACGTGGTTGCTATGTGCTGAATCCACC
1 ATCATTGATTAATAACGTGGTTGCTATGTGCTGAATCCACC
22518757 GACTATCTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (45 bp):
ATCATTGATTAATAACGTGGTTGCTATGTGCTGAATCCACCAGAT
Found at i:22523250 original size:10 final size:10
Alignment explanation
Indices: 22523235--22523318 Score: 55
Period size: 10 Copynumber: 8.0 Consensus size: 10
22523225 GCAACCCAAA
22523235 TTTTTTTATT
1 TTTTTTTATT
22523245 TTTTTTGT-TT
1 TTTTTT-TATT
22523255 TTTATTTTATT
1 TTT-TTTTATT
*
22523266 TTATTTTA-T
1 TTTTTTTATT
*
22523275 TTTCTTTACTT
1 TTTTTTTA-TT
* *
22523286 TATTTATTACT
1 T-TTTTTTATT
*
22523297 TTATTTTATT
1 TTTTTTTATT
22523307 TTATTATTTATT
1 TT-TT-TTTATT
22523319 ACTTATTTGG
Statistics
Matches: 56, Mismatches: 10, Indels: 14
0.70 0.12 0.17
Matches are distributed among these distances:
9 7 0.12
10 25 0.45
11 13 0.23
12 11 0.20
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.79
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:22523257 original size:16 final size:15
Alignment explanation
Indices: 22523238--22523318 Score: 65
Period size: 17 Copynumber: 5.1 Consensus size: 15
22523228 ACCCAAATTT
*
22523238 TTTTATTTTTTTTGTT
1 TTTTATTTTTTTT-TA
*
22523254 TTTTATTTTATTTTA
1 TTTTATTTTTTTTTA
*
22523269 TTTTA-TTTTCTTTA
1 TTTTATTTTTTTTTA
* *
22523283 CTTTATTTATTACTTTA
1 TTTTATTT-TT-TTTTA
22523300 TTTTATTTTATTATTTA
1 TTTTATTTT-TT-TTTA
22523317 TT
1 TT
22523319 ACTTATTTGG
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
14 11 0.21
15 8 0.15
16 15 0.28
17 19 0.36
ACGTcount: A:0.17, C:0.04, G:0.01, T:0.78
Consensus pattern (15 bp):
TTTTATTTTTTTTTA
Found at i:22523286 original size:5 final size:5
Alignment explanation
Indices: 22523238--22523311 Score: 69
Period size: 5 Copynumber: 14.4 Consensus size: 5
22523228 ACCCAAATTT
* * * *
22523238 TTTTA TTTTT TTTGTT TTTTA TTTTA TTTTA TTTTA TTTT- CTTTA CTTTA
1 TTTTA TTTTA TTT-TA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
*
22523288 TTTATTA CTTTA TTTTA TTTTA TT
1 -TT-TTA TTTTA TTTTA TTTTA TT
22523312 ATTTATTACT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
4 3 0.05
5 46 0.78
6 7 0.12
7 3 0.05
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:22523297 original size:12 final size:12
Alignment explanation
Indices: 22523280--22523326 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
22523270 TTTATTTTCT
22523280 TTACTTTATTTA
1 TTACTTTATTTA
22523292 TTACTTTATTTTA
1 TTACTTTA-TTTA
*
22523305 TT-TTATTATTTA
1 TTACT-TTATTTA
22523317 TTAC-TTATTT
1 TTACTTTATTT
22523327 GGATATTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
11 6 0.20
12 15 0.50
13 9 0.30
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.70
Consensus pattern (12 bp):
TTACTTTATTTA
Found at i:22523498 original size:21 final size:22
Alignment explanation
Indices: 22523472--22523530 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
22523462 GCCAAGAATG
*
22523472 CCTGCAGCCAACCACCC-TATT
1 CCTGCAGCCAACCACCCTTATC
22523493 CCTGCAGCCAACCACCCTTATC
1 CCTGCAGCCAACCACCCTTATC
* *
22523515 CCTGCACCCAAGCACC
1 CCTGCAGCCAACCACC
22523531 ACCCCTCAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 17 0.50
22 17 0.50
ACGTcount: A:0.24, C:0.51, G:0.10, T:0.15
Consensus pattern (22 bp):
CCTGCAGCCAACCACCCTTATC
Found at i:22524677 original size:18 final size:18
Alignment explanation
Indices: 22524650--22524689 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
22524640 AAAAAAATAT
22524650 AAAT-AATAAATAAAGAA
1 AAATAAATAAATAAAGAA
22524667 AAATAAATAAATAAAGAA
1 AAATAAATAAATAAAGAA
22524685 AAATA
1 AAATA
22524690 TATATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (18 bp):
AAATAAATAAATAAAGAA
Found at i:22528483 original size:21 final size:21
Alignment explanation
Indices: 22528458--22528638 Score: 148
Period size: 21 Copynumber: 8.6 Consensus size: 21
22528448 GAAACCTGAA
* *
22528458 AGCTAAACAGAAGCTCATGAG
1 AGCTAAACAGAAACTCATAAG
*
22528479 AGCTAAACAGAAACTCATGAG
1 AGCTAAACAGAAACTCATAAG
* * *
22528500 AGTTAAACAAAAACTTATAAG
1 AGCTAAACAGAAACTCATAAG
* * * * *
22528521 GGTTAAGCAGAAGCTCGTAAG
1 AGCTAAACAGAAACTCATAAG
*
22528542 AGCTAAACAGAAACTCTTAAG
1 AGCTAAACAGAAACTCATAAG
* * * * *
22528563 AGTTGAATAGAAGCTCAAAAG
1 AGCTAAACAGAAACTCATAAG
*
22528584 AGCTGAAC-GAAAACTCATAAG
1 AGCTAAACAG-AAACTCATAAG
* *
22528605 AGTTAAACAGAAGCTCATAAG
1 AGCTAAACAGAAACTCATAAG
* *
22528626 TGCTGAACAGAAA
1 AGCTAAACAGAAA
22528639 GTAAAGCACG
Statistics
Matches: 125, Mismatches: 33, Indels: 4
0.77 0.20 0.02
Matches are distributed among these distances:
20 1 0.01
21 123 0.98
22 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.18
Consensus pattern (21 bp):
AGCTAAACAGAAACTCATAAG
Found at i:22528575 original size:42 final size:42
Alignment explanation
Indices: 22528458--22528638 Score: 175
Period size: 42 Copynumber: 4.3 Consensus size: 42
22528448 GAAACCTGAA
* * * * * *
22528458 AGCTAAACAGAAGCTCATGAGAGCTAAACAGAAACTCATGAG
1 AGCTGAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
* * * * * * *
22528500 AGTTAAACAAAAACTTATAAGGGTTAAGCAGAAGCTCGTAAG
1 AGCTGAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
* * * * *
22528542 AGCTAAACAGAAACTCTTAAGAGTTGAATAGAAGCTCAAAAG
1 AGCTGAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
22528584 AGCTGAAC-GAAAACTCATAAGAGTTAAACAGAAGCTCATAAG
1 AGCTGAACAG-AAACTCATAAGAGTTAAACAGAAGCTCATAAG
*
22528626 TGCTGAACAGAAA
1 AGCTGAACAGAAA
22528639 GTAAAGCACG
Statistics
Matches: 110, Mismatches: 27, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
41 1 0.01
42 108 0.98
43 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.18
Consensus pattern (42 bp):
AGCTGAACAGAAACTCATAAGAGTTAAACAGAAGCTCATAAG
Found at i:22529133 original size:18 final size:18
Alignment explanation
Indices: 22529105--22529139 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
22529095 CTAGTTAATC
22529105 TATCAAATTAACTAATTTT
1 TATCAAATTAA-TAATTTT
22529124 TATC-AATTAATAATTT
1 TATCAAATTAATAATTT
22529140 ATATAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (18 bp):
TATCAAATTAATAATTTT
Found at i:22538418 original size:37 final size:36
Alignment explanation
Indices: 22538353--22538433 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 36
22538343 TATTTAGAAT
*
22538353 ATATATTAATTTAAAACAATATATAATAA-ATAATGAA
1 ATATA-TAACTTAAAACAATATATAATAACAT-ATGAA
*
22538390 ATGTATAACTTAAAACTAAT-TAATAATAACATATGAA
1 ATATATAACTTAAAAC-AATAT-ATAATAACATATGAA
22538427 ATATATA
1 ATATATA
22538434 CAATATTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
36 11 0.29
37 25 0.66
38 2 0.05
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.35
Consensus pattern (36 bp):
ATATATAACTTAAAACAATATATAATAACATATGAA
Found at i:22539084 original size:16 final size:16
Alignment explanation
Indices: 22539065--22539095 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22539055 ATATTAATGT
*
22539065 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
22539081 TATTTAATATTAAAA
1 TATTTAATATTAAAA
22539096 TAGTACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:22539710 original size:91 final size:88
Alignment explanation
Indices: 22539556--22539721 Score: 190
Period size: 91 Copynumber: 1.9 Consensus size: 88
22539546 CTCTTAGATT
* * * **
22539556 TTTTCAAAAAAGTAATTAAATCCCTACTTTTTTTGCACTCAATTGAATATTTAAACTTTCAAAAT
1 TTTTCAAAAAAGCAATTAAACCCCTACTTTTTTTGCACTCAATTGAATACTTAAACTGCCAAAAT
22539621 ACATAAAAAAAGACTCTCAAAAC
66 ACATAAAAAAAGACTCTCAAAAC
* * * *
22539644 TTTTCAAAAAATGCAATTAAGCCCCTGATTTTTTTGTGCACTCAATT-AGGTACTTGAACTGCCA
1 TTTTCAAAAAA-GCAATTAAACCCCT-ACTTTTTT-TGCACTCAATTGA-ATACTTAAACTGCCA
* *
22539708 AAATGCATCAAAAA
62 AAATACATAAAAAA
22539722 GGCTAGGGGC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
88 11 0.17
89 11 0.17
90 8 0.13
91 33 0.52
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.33
Consensus pattern (88 bp):
TTTTCAAAAAAGCAATTAAACCCCTACTTTTTTTGCACTCAATTGAATACTTAAACTGCCAAAAT
ACATAAAAAAAGACTCTCAAAAC
Found at i:22540242 original size:11 final size:11
Alignment explanation
Indices: 22540228--22540272 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
22540218 AGATAAATAT
22540228 TATTTTATTAA
1 TATTTTATTAA
*
22540239 TATTTTAATGATA
1 TATTTT-ATTA-A
*
22540252 TATTTTACTAA
1 TATTTTATTAA
22540263 TATTTTATTA
1 TATTTTATTA
22540273 TAAATAGCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 16 0.57
12 5 0.18
13 7 0.25
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:22542639 original size:21 final size:22
Alignment explanation
Indices: 22542615--22542661 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
22542605 AAAAGTTATT
*
22542615 AAATTTTAATAAAAA-TATTAA
1 AAATTTTAATAAAAATTATAAA
*
22542636 AAA-TTTATTAAAAATTATAAA
1 AAATTTTAATAAAAATTATAAA
22542657 AAATT
1 AAATT
22542662 ATAAAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 10 0.45
21 11 0.50
22 1 0.05
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (22 bp):
AAATTTTAATAAAAATTATAAA
Found at i:22542642 original size:20 final size:20
Alignment explanation
Indices: 22542603--22542675 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
22542593 AATAAAAGTT
* * *
22542603 ATAAAAGTTATTAAATTTTA
1 ATAAAAATTATAAAAATTTA
22542623 ATAAAAA-TATTAAAAATTTA
1 ATAAAAATTA-TAAAAATTTA
* *
22542643 TTAAAAATTATAAAAAATT-
1 ATAAAAATTATAAAAATTTA
*
22542662 ATAAAAATTGTAAA
1 ATAAAAATTATAAA
22542676 CTTTTATAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
19 14 0.32
20 28 0.64
21 2 0.05
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
ATAAAAATTATAAAAATTTA
Found at i:22542661 original size:10 final size:10
Alignment explanation
Indices: 22542633--22542810 Score: 59
Period size: 10 Copynumber: 18.1 Consensus size: 10
22542623 ATAAAAATAT
*
22542633 TAAAAATTTA
1 TAAAAAATTA
*
22542643 TTAAAAATTA
1 TAAAAAATTA
22542653 TAAAAAATTA
1 TAAAAAATTA
*
22542663 T-AAAAATTG
1 TAAAAAATTA
***
22542672 TAAACTTTTA
1 TAAAAAATTA
* **
22542682 T-AAAAGTCG
1 TAAAAAATTA
22542691 TAAAAAATTA
1 TAAAAAATTA
*
22542701 TAAAATA-TA
1 TAAAAAATTA
*
22542710 T-AGAAA-TA
1 TAAAAAATTA
*
22542718 TAGAAAAA-AA
1 TA-AAAAATTA
* *
22542728 TGATAAAATTT
1 T-AAAAAATTA
* *
22542739 TATAAAGTTA
1 TAAAAAATTA
22542749 TAAGAAAATTA
1 TAA-AAAATTA
* *
22542760 TAAAAAAATG
1 TAAAAAATTA
22542770 TAAAGAAA-TA
1 TAAA-AAATTA
* *
22542780 T-AAAATTTG
1 TAAAAAATTA
22542789 TAAAAATAATTA
1 T-AAAA-AATTA
22542801 T-AAAAATTA
1 TAAAAAATTA
22542810 T
1 T
22542811 CGTACCAAAA
Statistics
Matches: 121, Mismatches: 35, Indels: 25
0.67 0.19 0.14
Matches are distributed among these distances:
8 8 0.07
9 25 0.21
10 67 0.55
11 17 0.14
12 4 0.03
ACGTcount: A:0.60, C:0.01, G:0.06, T:0.33
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:22542670 original size:9 final size:9
Alignment explanation
Indices: 22542594--22542675 Score: 58
Period size: 9 Copynumber: 8.6 Consensus size: 9
22542584 AGGATAAAAA
*
22542594 ATAAAAGTT
1 ATAAAAATT
*
22542603 ATAAAAGTT
1 ATAAAAATT
**
22542612 ATTAAATTTT
1 A-TAAAAATT
22542622 AATAAAAA-T
1 -ATAAAAATT
22542631 ATTAAAAATTT
1 A-TAAAAA-TT
22542642 ATTAAAAATT
1 A-TAAAAATT
22542652 ATAAAAAATT
1 AT-AAAAATT
22542662 ATAAAAATT
1 ATAAAAATT
*
22542671 GTAAA
1 ATAAA
22542676 CTTTTATAAA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
8 1 0.02
9 29 0.47
10 22 0.35
11 10 0.16
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (9 bp):
ATAAAAATT
Found at i:22542670 original size:19 final size:19
Alignment explanation
Indices: 22542623--22542810 Score: 87
Period size: 19 Copynumber: 9.6 Consensus size: 19
22542613 TTAAATTTTA
*
22542623 ATAAAAA-TATTAAAAATTT
1 ATAAAAATTA-TAAAAAATT
22542642 ATTAAAAATTATAAAAAATT
1 A-TAAAAATTATAAAAAATT
* ***
22542662 ATAAAAATTGTAAACTTTT
1 ATAAAAATTATAAAAAATT
* **
22542681 ATAAAAGTCGTAAAAAATT
1 ATAAAAATTATAAAAAATT
* *
22542700 AT-AAAATATATAGAAATATAG
1 ATAAAAAT-TATA-AAAAAT-T
* * **
22542721 AAAAAAATGATAAAATTTT
1 ATAAAAATTATAAAAAATT
*
22542740 AT-AAAGTTATAAGAAAATT
1 ATAAAAATTATAA-AAAATT
* *
22542759 ATAAAAAAATGTAAAGAAA-T
1 AT-AAAAATTATAAA-AAATT
* *
22542779 ATAAAATTTGTAAAAATAATT
1 ATAAAAATTAT-AAAA-AATT
22542800 ATAAAAATTAT
1 ATAAAAATTAT
22542811 CGTACCAAAA
Statistics
Matches: 125, Mismatches: 31, Indels: 24
0.69 0.17 0.13
Matches are distributed among these distances:
18 12 0.10
19 48 0.38
20 34 0.27
21 26 0.21
22 5 0.04
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (19 bp):
ATAAAAATTATAAAAAATT
Done.