Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 77 of 211
Found at i:23924369 original size:27 final size:26
Alignment explanation
Indices: 23924310--23924370 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
23924300 AAAAAAGAGG
23924310 GAAAGAAAGGAGAGAAAAGAGAAGAAA
1 GAAAG-AAGGAGAGAAAAGAGAAGAAA
*
23924337 -AGAAGAAGTAGAGGAAGAAGA-AAGAAA
1 GA-AAGAAGGAGA-GAA-AAGAGAAGAAA
23924364 GAAAGAA
1 GAAAGAA
23924371 AAAATGTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
26 7 0.24
27 17 0.59
28 5 0.17
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.02
Consensus pattern (26 bp):
GAAAGAAGGAGAGAAAAGAGAAGAAA
Found at i:23924599 original size:101 final size:100
Alignment explanation
Indices: 23924496--23924827 Score: 362
Period size: 101 Copynumber: 3.4 Consensus size: 100
23924486 ATGGTTTAAT
* * * *
23924496 TTTTTTA-TGAATGCAATTTTTTTATAATTATTTTAAAATTATTCTGTTAGTAATTTGGGATTAT
1 TTTTTTAGT-AATGTAATTTTTTTATAATTATTTT-AAATTATTTTGTTAGTAATTTAGGATTAG
* *
23924560 ATTATAAATTGTT-GGGTTTAGTTTAGTGTTTTATGA
64 ATTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
* **
23924596 TTTTTTTATTAATGTAA---AATTAT--TT-TGTTT--ATTATTTTGTTAGTAATTTATGG-TTA
1 -TTTTTTAGTAATGTAATTTTTTTATAATTAT-TTTAAATTATTTTGTTAGTAATTTA-GGATTA
*
23924652 GATTATAAATTGTTAGTGTTTAATTTAGTGTTTTGTGA
63 GATTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
* * * * * * *
23924690 TTTTTTAGTAATGTAATTTTTTAAAAATAATTTTATAGTTATTTTGTTAGCAATTTATGATTAGG
1 TTTTTTAGTAATGTAATTTTTTTATAATTATTTTA-AATTATTTTGTTAGTAATTTAGGATTAGA
23924755 TTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
65 TTATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
23924791 TTTTTTAGTAATGTAATTTTTTTATAATGTAATTTTA
1 TTTTTTAGTAATGTAATTTTTTTATAAT-T-ATTTTA
23924828 TTTGATTTTT
Statistics
Matches: 192, Mismatches: 23, Indels: 30
0.78 0.09 0.12
Matches are distributed among these distances:
93 49 0.26
94 22 0.11
95 1 0.01
96 7 0.04
98 8 0.04
99 1 0.01
100 1 0.01
101 96 0.50
102 1 0.01
103 6 0.03
ACGTcount: A:0.28, C:0.01, G:0.14, T:0.57
Consensus pattern (100 bp):
TTTTTTAGTAATGTAATTTTTTTATAATTATTTTAAATTATTTTGTTAGTAATTTAGGATTAGAT
TATAAATTGTTAGTGTTTAGTTTAGTGTTTTGTGA
Found at i:23924813 original size:17 final size:16
Alignment explanation
Indices: 23924791--23924826 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
23924781 TGTTTTGTGA
23924791 TTTTTTAGTAATGTAAT
1 TTTTTTA-TAATGTAAT
23924808 TTTTTTATAATGTAAT
1 TTTTTTATAATGTAAT
23924824 TTT
1 TTT
23924827 ATTTGATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (16 bp):
TTTTTTATAATGTAAT
Found at i:23926255 original size:16 final size:16
Alignment explanation
Indices: 23926234--23926273 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
23926224 CCTACTCCCT
23926234 CCCAATTTAAACCCAG
1 CCCAATTTAAACCCAG
*
23926250 CCCAATTTAAATCCAG
1 CCCAATTTAAACCCAG
23926266 CCCAATTT
1 CCCAATTT
23926274 TCTCTTAGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.05, T:0.25
Consensus pattern (16 bp):
CCCAATTTAAACCCAG
Found at i:23926757 original size:16 final size:16
Alignment explanation
Indices: 23926736--23926769 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
23926726 AATTATTGAA
23926736 TATATTGTAATTAATG
1 TATATTGTAATTAATG
23926752 TATATTGTAATTAATG
1 TATATTGTAATTAATG
23926768 TA
1 TA
23926770 AGAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (16 bp):
TATATTGTAATTAATG
Found at i:23927062 original size:9 final size:9
Alignment explanation
Indices: 23927048--23927117 Score: 77
Period size: 9 Copynumber: 7.3 Consensus size: 9
23927038 CCTAATTTTT
23927048 TAATTTGGG
1 TAATTTGGG
*
23927057 TAATTTGGA
1 TAATTTGGG
23927066 TAATTTTCGGG
1 TAA-TTT-GGG
*
23927077 TAATTCGGG
1 TAATTTGGG
23927086 TAATTTGGG
1 TAATTTGGG
23927095 TAATTTTCGGG
1 TAA-TTT-GGG
*
23927106 TAATTCGGG
1 TAATTTGGG
23927115 TAA
1 TAA
23927118 GTCGAGTAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
9 31 0.60
10 10 0.19
11 11 0.21
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (9 bp):
TAATTTGGG
Found at i:23927086 original size:29 final size:29
Alignment explanation
Indices: 23927048--23927117 Score: 122
Period size: 29 Copynumber: 2.4 Consensus size: 29
23927038 CCTAATTTTT
*
23927048 TAATTTGGGTAATTTGGATAATTTTCGGG
1 TAATTCGGGTAATTTGGATAATTTTCGGG
*
23927077 TAATTCGGGTAATTTGGGTAATTTTCGGG
1 TAATTCGGGTAATTTGGATAATTTTCGGG
23927106 TAATTCGGGTAA
1 TAATTCGGGTAA
23927118 GTCGAGTAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (29 bp):
TAATTCGGGTAATTTGGATAATTTTCGGG
Found at i:23927103 original size:20 final size:19
Alignment explanation
Indices: 23927048--23927117 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
23927038 CCTAATTTTT
*
23927048 TAATTTGGGTAATTT-GGA
1 TAATTTGGGTAATTTCGGG
23927066 TAATTTTCGGGTAA-TTCGGG
1 TAA-TTT-GGGTAATTTCGGG
23927086 TAATTTGGGTAATTTTCGGG
1 TAATTTGGGTAA-TTTCGGG
*
23927106 TAATTCGGGTAA
1 TAATTTGGGTAA
23927118 GTCGAGTAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
18 9 0.20
19 8 0.18
20 28 0.62
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.41
Consensus pattern (19 bp):
TAATTTGGGTAATTTCGGG
Found at i:23927113 original size:38 final size:38
Alignment explanation
Indices: 23927048--23927140 Score: 100
Period size: 38 Copynumber: 2.4 Consensus size: 38
23927038 CCTAATTTTT
* *
23927048 TAATTTGGGTAA-TTTGGATAATTTTCGGGTAATTCGGG
1 TAATTTGGGTAATTTTGGATAA-TTTCGGGTAAGTCGAG
*
23927086 TAATTTGGGTAATTTTCGGGTAA-TTCGGGTAAGTCGAG
1 TAATTTGGGTAATTTT-GGATAATTTCGGGTAAGTCGAG
* *
23927124 TAAGTCGGGTAAATTTT
1 TAATTTGGGT-AATTTT
23927141 AACCAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
38 33 0.70
39 9 0.19
40 5 0.11
ACGTcount: A:0.25, C:0.06, G:0.29, T:0.40
Consensus pattern (38 bp):
TAATTTGGGTAATTTTGGATAATTTCGGGTAAGTCGAG
Found at i:23927126 original size:29 final size:29
Alignment explanation
Indices: 23927066--23927126 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 29
23927056 GTAATTTGGA
* * *
23927066 TAATTTTCGGGTAATTCGGGTAATTTGGG
1 TAATTTTCGGGTAATTCGGGTAAGTCGAG
23927095 TAATTTTCGGGTAATTCGGGTAAGTCGAG
1 TAATTTTCGGGTAATTCGGGTAAGTCGAG
23927124 TAA
1 TAA
23927127 GTCGGGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.25, C:0.08, G:0.30, T:0.38
Consensus pattern (29 bp):
TAATTTTCGGGTAATTCGGGTAAGTCGAG
Found at i:23927315 original size:12 final size:12
Alignment explanation
Indices: 23927298--23927322 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23927288 AAGAATTTCG
23927298 GGTCGGTTAACC
1 GGTCGGTTAACC
23927310 GGTCGGTTAACC
1 GGTCGGTTAACC
23927322 G
1 G
23927323 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:23927979 original size:12 final size:12
Alignment explanation
Indices: 23927959--23927991 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
23927949 TCATGCACCC
*
23927959 GAGCCAGAGGCA
1 GAGCTAGAGGCA
23927971 GAGCTAGAGGCA
1 GAGCTAGAGGCA
23927983 GAGCTAGAG
1 GAGCTAGAG
23927992 CTACACTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.33, C:0.18, G:0.42, T:0.06
Consensus pattern (12 bp):
GAGCTAGAGGCA
Found at i:23928143 original size:33 final size:33
Alignment explanation
Indices: 23928099--23928216 Score: 137
Period size: 33 Copynumber: 3.6 Consensus size: 33
23928089 CAGCCCACTA
23928099 CCACCTCAGTACTCCACTCCTCCCGACTCGTAT
1 CCACCTCAGTACTCCACTCCTCCCGACTCGTAT
* *
23928132 CCACCTTAGTACTGCACTCCTCCCGACTCGTAT
1 CCACCTCAGTACTCCACTCCTCCCGACTCGTAT
** * * * * *
23928165 CCACAACAATACTCCACTCTTCCTGGCTTGTAT
1 CCACCTCAGTACTCCACTCCTCCCGACTCGTAT
* *
23928198 CCACCTAAGCACTCCACTC
1 CCACCTCAGTACTCCACTC
23928217 ATCTTGGCCT
Statistics
Matches: 69, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 69 1.00
ACGTcount: A:0.21, C:0.44, G:0.09, T:0.25
Consensus pattern (33 bp):
CCACCTCAGTACTCCACTCCTCCCGACTCGTAT
Found at i:23928578 original size:73 final size:73
Alignment explanation
Indices: 23928448--23928609 Score: 236
Period size: 73 Copynumber: 2.2 Consensus size: 73
23928438 TCAAACCATC
* * * *
23928448 AATTTTAGGGGGTTTTGCAATTTAAATAGTCAATTTTGTATTTATGTAATGACTTTTTTGTC-AT
1 AATTTTA-GGGTTTTTGCAATTTAAATAGTCAAGTTTGCATTTATGCAATGACTTTTTT-TCTAT
*
23928512 TTCAGTTATT
64 TTAAGTTATT
* *
23928522 AATTTTTGGGTTTTTGTAATTTAAATAGTCAAGTTTGCATTTATGCAATGACTTTTTTTCTATTT
1 AATTTTAGGGTTTTTGCAATTTAAATAGTCAAGTTTGCATTTATGCAATGACTTTTTTTCTATTT
23928587 AAGTTATT
66 AAGTTATT
23928595 AATTTTAGGGTTTTT
1 AATTTTAGGGTTTTT
23928610 TGTATTATTT
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
72 2 0.03
73 71 0.90
74 6 0.08
ACGTcount: A:0.25, C:0.06, G:0.15, T:0.53
Consensus pattern (73 bp):
AATTTTAGGGTTTTTGCAATTTAAATAGTCAAGTTTGCATTTATGCAATGACTTTTTTTCTATTT
AAGTTATT
Found at i:23931867 original size:27 final size:27
Alignment explanation
Indices: 23931816--23931867 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
23931806 TTATATAAGG
* **
23931816 GTCACCAGTGGCGCCTATTAAATAGGA
1 GTCACCAGTGACGCCTACCAAATAGGA
*
23931843 GTCACCAGTGACGCCTACCAGATAG
1 GTCACCAGTGACGCCTACCAAATAG
23931868 ACACCACCTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.19
Consensus pattern (27 bp):
GTCACCAGTGACGCCTACCAAATAGGA
Found at i:23931992 original size:19 final size:20
Alignment explanation
Indices: 23931968--23932010 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
23931958 AGGTATCGCT
23931968 AATAAAATAA-TATTA-AAAA
1 AATAAAA-AATTATTATAAAA
23931987 AATAAAAAATTATTATAAAA
1 AATAAAAAATTATTATAAAA
23932007 AATA
1 AATA
23932011 GGTGGTGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.09
19 12 0.55
20 8 0.36
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAAAAAATTATTATAAAA
Found at i:23932454 original size:29 final size:29
Alignment explanation
Indices: 23932400--23932455 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
23932390 ATAACCAATA
**
23932400 ATTTATTCTTGTAATTAATTTTTTTTTCT
1 ATTTATTCTTGTAATTAATTAATTTTTCT
23932429 ATTTCATT-TTGTAATTAATTAATTTTT
1 ATTT-ATTCTTGTAATTAATTAATTTTT
23932456 ATCTTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.25, C:0.05, G:0.04, T:0.66
Consensus pattern (29 bp):
ATTTATTCTTGTAATTAATTAATTTTTCT
Found at i:23934586 original size:21 final size:21
Alignment explanation
Indices: 23934543--23934586 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
23934533 TAAAATAACA
* *
23934543 GTATATAATAAAGTAATTCAT
1 GTATATAAAAAAGTAAATCAT
23934564 GTATATAAAAAGAGTAAAT-AT
1 GTATATAAAAA-AGTAAATCAT
23934585 GT
1 GT
23934587 GAACTAATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.50, C:0.02, G:0.14, T:0.34
Consensus pattern (21 bp):
GTATATAAAAAAGTAAATCAT
Found at i:23936281 original size:89 final size:89
Alignment explanation
Indices: 23936133--23937079 Score: 1258
Period size: 89 Copynumber: 10.6 Consensus size: 89
23936123 GGAGACAGGA
* * * * * * * *
23936133 CTGGTATCTTCGATCTGCTTTGTTGTCAATACAGGAAGGCAAGATTTGTTATTTTCAGTCTGTTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
* *
23936198 CGTTG-CAAACTCAGGGAGACAAGG
66 CGCTGTC-AACTCAGGGAGGCAAGG
* * * * * * * * *
23936222 TTGGTGTCTTTGATTTGCTTCGCTGTTAGCACTGGAAGGCAAGATTTTCTATCTTCAGTCTACTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
*
23936287 CGCTGTCAACCCAGGGAGGCAAGG
66 CGCTGTCAACTCAGGGAGGCAAGG
*
23936311 CTGGTGTCTTCGATCTGCTTCGCTGGCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
*
23936376 CGCTGTTAA-TCCAGGGAGGCAAGG
66 CGCTGTCAACT-CAGGGAGGCAAGG
* * * *
23936400 CTAGTGTTTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTTCTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
* * *
23936465 CACTATC-AGTACAGGGAGGCAAGG
66 CGCTGTCAACT-CAGGGAGGCAAGG
* * *
23936489 TTGGTGTCTTCGATCTGCTTCACTGTCAGTATAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
*
23936554 CGCTGTCAACCCAGGGAGGCAAGG
66 CGCTGTCAACTCAGGGAGGCAAGG
*
23936578 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGTAAGATCTGCTA-CTTTCAGTCTGCT
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATC-TTCAGTCTGCT
*
23936642 CCGCTATCAAC-CTAGGGAGGCAAGG
65 CCGCTGTCAACTC-AGGGAGGCAAGG
* *
23936667 TTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTT
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
* * *
23936732 CACTGTTAACCCAGGGAGGCAAGG
66 CGCTGTCAACTCAGGGAGGCAAGG
* * * * *
23936756 CTGGTCTCTTCGATCTGCTTCGCTGTCAGTAAAGAAAGGCAAGATCTGCTATCTTCAGTCTTCTT
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
*
23936821 CGCTGTCAA-TACAGGGAGGTAAGG
66 CGCTGTCAACT-CAGGGAGGCAAGG
* *
23936845 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATTTGCTATTTTCAGTCTGCTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
* *
23936910 CGCTGTCAACCCAGGGTGGCAAGG
66 CGCTGTCAACTCAGGGAGGCAAGG
* * * *
23936934 CTGGTGTCTTCGATCTGCTTTGCTATCAGTACAGGAAGGTAATATCTGCTATCTTCAGTCTGCTC
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
*
23936999 CGTTGTCAACTCAGGGAGGCAAGG
66 CGCTGTCAACTCAGGGAGGCAAGG
* * * * *
23937023 CTGGTGTCTTTGATCTGCTTCACTGTTAGTACAGGAAGGCAAGATCCGCTAACTTCA
1 CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCA
23937080 CTGATCTGTT
Statistics
Matches: 752, Mismatches: 96, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
88 3 0.00
89 745 0.99
90 4 0.01
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (89 bp):
CTGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
CGCTGTCAACTCAGGGAGGCAAGG
Found at i:23936308 original size:45 final size:45
Alignment explanation
Indices: 23936258--23937021 Score: 452
Period size: 45 Copynumber: 17.2 Consensus size: 45
23936248 TAGCACTGGA
* * * *
23936258 AGGCAAGATTTTCTATCTTCAGTCTACTCCGCTGTCAACCCAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATCCAGGG
* * * * * * * *
23936303 AGGCAAG-GCTGGTGTCTTC-GATCTGCTTCGCTGGCAGTACAGGA
1 AGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCTGTCAATCCAGGG
*
23936347 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTTAATCCAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATCCAGGG
* * * * * * * *
23936392 AGGCAAG-GCTAG-TGTTTTC-GATCTGCTTCACTGTCAGTACAGGA
1 AGGCAAGATCT-GCTATCTTCAG-TCTGCTCCGCTGTCAATCCAGGG
* * * * *
23936436 AGGCAAGATCTGCTATCTTCAGTCTTCTCCACTATCAGTACAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATCCAGGG
* * * * * * ** *
23936481 AGGCAAGGT-TGGTGTCTTC-GATCTGCTTCACTGTCAGTATAGGA
1 AGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCTGTCAATCCAGGG
*
23936525 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAACCCAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATCCAGGG
* * * * * * *
23936570 AGGCAAG-GCTGGTGTCTTC-GATCTGCTTCGCTGTCAGTACAGGA
1 AGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCTGTCAATCCAGGG
* *
23936614 AGGTAAGATCTGCTA-CTTTCAGTCTGCTCCGCTATCAA-CCTAGGG
1 AGGCAAGATCTGCTATC-TTCAGTCTGCTCCGCTGTCAATCC-AGGG
* * * * * * *
23936659 AGGCAAGGT-TGGTGTCTTC-GATCTGCTTCGCTGTCAGTACAGGA
1 AGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCTGTCAATCCAGGG
* * * *
23936703 AGGCAAGATCTGCTATCTTCAGTCTGCTTCACTGTTAACCCAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATCCAGGG
* * * * * ** **
23936748 AGGCAAG-GCTGGTCTCTTC-GATCTGCTTCGCTGTCAGTAAAGAA
1 AGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCTGTCAATCCAGGG
* * *
23936792 AGGCAAGATCTGCTATCTTCAGTCTTCTTCGCTGTCAATACAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATCCAGGG
* * * * * * * *
23936837 AGGTAAG-GCTGGTGTCTTC-GATCTGCTTCGCTGTCAGTACAGGA
1 AGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCTGTCAATCCAGGG
* * *
23936881 AGGCAAGATTTGCTATTTTCAGTCTGCTCCGCTGTCAACCCAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATCCAGGG
* * * * ** * * * *
23936926 TGGCAAG-GCTGGTGTCTTC-GATCTGCTTTGCTATCAGTACAGGA
1 AGGCAAGATCTGCTATCTTCAG-TCTGCTCCGCTGTCAATCCAGGG
* * *
23936970 AGGTAATATCTGCTATCTTCAGTCTGCTCCGTTGTCAA-CTCAGGG
1 AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATC-CAGGG
23937015 AGGCAAG
1 AGGCAAG
23937022 GCTGGTGTCT
Statistics
Matches: 533, Mismatches: 155, Indels: 62
0.71 0.21 0.08
Matches are distributed among these distances:
43 8 0.02
44 254 0.48
45 263 0.49
46 8 0.02
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (45 bp):
AGGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAATCCAGGG
Found at i:23938417 original size:41 final size:42
Alignment explanation
Indices: 23938371--23938449 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
23938361 TCAATTTTCA
*
23938371 TTTTTT-GGACTCAAAACTCCCTTTAAGGGTTTTCACCCCTT
1 TTTTTTAGGACTCAAAACACCCTTTAAGGGTTTTCACCCCTT
* **
23938412 TTTTTTAGGACTCAAAGCACCCTTTGCGGGTTTTCACC
1 TTTTTTAGGACTCAAAACACCCTTTAAGGGTTTTCACC
23938450 TTGATCCTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 6 0.18
42 27 0.82
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (42 bp):
TTTTTTAGGACTCAAAACACCCTTTAAGGGTTTTCACCCCTT
Found at i:23938921 original size:20 final size:19
Alignment explanation
Indices: 23938896--23938946 Score: 57
Period size: 20 Copynumber: 2.6 Consensus size: 19
23938886 GAGGTTTTTA
23938896 TTTGTTTTTTTGTTCCTATT
1 TTTGTTTTTTTGTTCCT-TT
* **
23938916 TTTGTTTTTGTTTTTTGTTT
1 TTTGTTTTT-TTGTTCCTTT
23938936 TTTGTTTTTTT
1 TTTGTTTTTTT
23938947 TTATCGAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 20 0.74
21 5 0.19
ACGTcount: A:0.02, C:0.04, G:0.12, T:0.82
Consensus pattern (19 bp):
TTTGTTTTTTTGTTCCTTT
Found at i:23938930 original size:7 final size:7
Alignment explanation
Indices: 23938914--23938945 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
23938904 TTTGTTCCTA
23938914 TTTTTG-
1 TTTTTGT
23938920 TTTTTGT
1 TTTTTGT
23938927 TTTTTGT
1 TTTTTGT
23938934 TTTTTGT
1 TTTTTGT
23938941 TTTTT
1 TTTTT
23938946 TTTATCGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTGT
Found at i:23939036 original size:14 final size:14
Alignment explanation
Indices: 23939013--23939046 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
23939003 ATCAATGTTA
* *
23939013 TTCCAGATAAGGTC
1 TTCCACATAAGATC
23939027 TTCCACATAAGATC
1 TTCCACATAAGATC
23939041 TTCCAC
1 TTCCAC
23939047 TTTCATTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (14 bp):
TTCCACATAAGATC
Found at i:23945990 original size:40 final size:40
Alignment explanation
Indices: 23945931--23946008 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
23945921 ACGTGGACAC
*
23945931 AAAGCACGCTTACGAGGACGCGATTTGTTGCCACGTAGGT
1 AAAGCACGCTGACGAGGACGCGATTTGTTGCCACGTAGGT
* * * *
23945971 AAAGCGCGCTGACGTGGACGCGTTTTGTTGCCATGTAG
1 AAAGCACGCTGACGAGGACGCGATTTGTTGCCACGTAG
23946009 CGCGCCCTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24
Consensus pattern (40 bp):
AAAGCACGCTGACGAGGACGCGATTTGTTGCCACGTAGGT
Found at i:23946097 original size:21 final size:21
Alignment explanation
Indices: 23946068--23946162 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
23946058 TTTTTTGATC
23946068 GGGTTAGGGTTTTTATGTTAA
1 GGGTTAGGGTTTTTATGTTAA
*
23946089 GGTTTAGGGTTTTT-TAGTTAA
1 GGGTTAGGGTTTTTAT-GTTAA
**
23946110 GGGTTAAAGTTTTTATGTTAA
1 GGGTTAGGGTTTTTATGTTAA
*
23946131 GGGTTAGGGTTTTTAAGTTAA
1 GGGTTAGGGTTTTTATGTTAA
*
23946152 GGGATAGGGTT
1 GGGTTAGGGTT
23946163 AAGGTTAGGG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
20 1 0.02
21 62 0.97
22 1 0.02
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (21 bp):
GGGTTAGGGTTTTTATGTTAA
Found at i:23946115 original size:42 final size:42
Alignment explanation
Indices: 23946068--23946162 Score: 145
Period size: 42 Copynumber: 2.3 Consensus size: 42
23946058 TTTTTTGATC
* *
23946068 GGGTTAGGGTTTTTATGTTAAGGTTTAGGGTTTTTTAGTTAA
1 GGGTTAGGGTTTTTATGTTAAGGGTTAGGGTTTTTAAGTTAA
**
23946110 GGGTTAAAGTTTTTATGTTAAGGGTTAGGGTTTTTAAGTTAA
1 GGGTTAGGGTTTTTATGTTAAGGGTTAGGGTTTTTAAGTTAA
*
23946152 GGGATAGGGTT
1 GGGTTAGGGTT
23946163 AAGGTTAGGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.22, C:0.00, G:0.33, T:0.45
Consensus pattern (42 bp):
GGGTTAGGGTTTTTATGTTAAGGGTTAGGGTTTTTAAGTTAA
Found at i:23947404 original size:7 final size:7
Alignment explanation
Indices: 23947394--23947419 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
23947384 TTATATACAT
23947394 AATACTA
1 AATACTA
23947401 AATACTA
1 AATACTA
23947408 AATACTA
1 AATACTA
23947415 AATAC
1 AATAC
23947420 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:23948623 original size:11 final size:10
Alignment explanation
Indices: 23948611--23948675 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 10
23948601 AAATATGGAT
23948611 TTGAGAGAAA
1 TTGAGAGAAA
23948621 TTTG-GAAGGAAA
1 -TTGAG-A-GAAA
23948633 TTGAGAGCAAA
1 TTGAGAG-AAA
23948644 TTGAGAGCAAA
1 TTGAGAG-AAA
23948655 TTGAGAGGAAA
1 TTGAGA-GAAA
23948666 TTGAGA-AAA
1 TTGAGAGAAA
23948675 T
1 T
23948676 AATTGAGAGA
Statistics
Matches: 49, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
9 4 0.08
10 2 0.04
11 37 0.76
12 6 0.12
ACGTcount: A:0.46, C:0.03, G:0.29, T:0.22
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:23948636 original size:22 final size:22
Alignment explanation
Indices: 23948611--23948685 Score: 66
Period size: 22 Copynumber: 3.4 Consensus size: 22
23948601 AAATATGGAT
*
23948611 TTGAGAGAAATTTG-GAAGGAAA
1 TTGAGAGAAATTTGAG-AGCAAA
23948633 TTGAGAGCAAA-TTGAGAGCAAA
1 TTGAGAG-AAATTTGAGAGCAAA
**
23948655 TTGAGAGGAAA-TTGAGAAAATAA
1 TTGAGA-GAAATTTGAGAGCA-AA
23948678 TTGAGAGA
1 TTGAGAGA
23948686 GGATTAGCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
22 33 0.72
23 13 0.28
ACGTcount: A:0.47, C:0.03, G:0.29, T:0.21
Consensus pattern (22 bp):
TTGAGAGAAATTTGAGAGCAAA
Found at i:23948648 original size:33 final size:33
Alignment explanation
Indices: 23948611--23948685 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 33
23948601 AAATATGGAT
**
23948611 TTGAGAGAAATTTG-GAAGGAAATTGAGAGCA-AA
1 TTGAGAGAAA-TTGAG-AGGAAATTGAGAAAATAA
23948644 TTGAGAGCAAATTGAGAGGAAATTGAGAAAATAA
1 TTGAGAG-AAATTGAGAGGAAATTGAGAAAATAA
23948678 TTGAGAGA
1 TTGAGAGA
23948686 GGATTAGCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
33 24 0.65
34 13 0.35
ACGTcount: A:0.47, C:0.03, G:0.29, T:0.21
Consensus pattern (33 bp):
TTGAGAGAAATTGAGAGGAAATTGAGAAAATAA
Found at i:23950508 original size:22 final size:22
Alignment explanation
Indices: 23950483--23950524 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
23950473 GGAATGGAAA
23950483 GGAGAGAAAAGAGA-AAACAAAT
1 GGAGAGAAAAGA-ATAAACAAAT
*
23950505 GGAGAGGAAAGAATAAACAA
1 GGAGAGAAAAGAATAAACAA
23950525 TTAATGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.62, C:0.05, G:0.29, T:0.05
Consensus pattern (22 bp):
GGAGAGAAAAGAATAAACAAAT
Found at i:23959049 original size:19 final size:19
Alignment explanation
Indices: 23959017--23959071 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 19
23959007 CATGTTGTAA
* *
23959017 TGAAAAGGAAAAAAAG-AT
1 TGAAAAAGAGAAAAAGAAT
23959035 TGAAAAAGACG-AAAAGAAT
1 TGAAAAAGA-GAAAAAGAAT
*
23959054 TGAAAGAGAG-AAAAGAAT
1 TGAAAAAGAGAAAAAGAAT
23959072 CAAAAAAGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 22 0.69
19 10 0.31
ACGTcount: A:0.64, C:0.02, G:0.24, T:0.11
Consensus pattern (19 bp):
TGAAAAAGAGAAAAAGAAT
Found at i:23959070 original size:18 final size:19
Alignment explanation
Indices: 23959028--23959071 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
23959018 GAAAAGGAAA
23959028 AAAAG-ATTGAAAAAGACG
1 AAAAGAATTGAAAAAGACG
*
23959046 AAAAGAATTGAAAGAGA-G
1 AAAAGAATTGAAAAAGACG
23959064 AAAAGAAT
1 AAAAGAAT
23959072 CAAAAAAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.64, C:0.02, G:0.23, T:0.11
Consensus pattern (19 bp):
AAAAGAATTGAAAAAGACG
Found at i:23959100 original size:12 final size:12
Alignment explanation
Indices: 23959085--23959118 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
23959075 AAAAGATTGT
23959085 GAAAAAGAAAAC
1 GAAAAAGAAAAC
**
23959097 GAAAAAGAAATT
1 GAAAAAGAAAAC
23959109 GAAAAAGAAA
1 GAAAAAGAAA
23959119 GTGAGAGTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.06
Consensus pattern (12 bp):
GAAAAAGAAAAC
Found at i:23962757 original size:21 final size:21
Alignment explanation
Indices: 23962731--23962771 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23962721 AGAATATAAA
23962731 TTATAACTCATAATTATTTTT
1 TTATAACTCATAATTATTTTT
* **
23962752 TTATAATTTTTAATTATTTT
1 TTATAACTCATAATTATTTT
23962772 CCAAAGTCAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATAACTCATAATTATTTTT
Found at i:23963328 original size:51 final size:51
Alignment explanation
Indices: 23963252--23963442 Score: 221
Period size: 51 Copynumber: 3.8 Consensus size: 51
23963242 CCGGTTCATA
* * *
23963252 TAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGGTACAAG
* * *
23963303 TAGTAGCCTACACATAGTACTACACACGTGATCGA--AGCTATCCGGTACGCA-
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGGTAC-AAG
* * *
23963354 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACAAG
1 TAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGGTACAAG
*
23963404 TAGTAGCCTGTACATAGTACTACACACGTGACCATCACT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
23963443 TTCACTTTCA
Statistics
Matches: 117, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
49 5 0.04
50 40 0.34
51 69 0.59
52 2 0.02
53 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGGTACAAG
Found at i:23967230 original size:41 final size:41
Alignment explanation
Indices: 23967101--23967240 Score: 133
Period size: 41 Copynumber: 3.4 Consensus size: 41
23967091 TATGTGATTC
* * **
23967101 GAAATAGCTTCGGCTATTTATGGCACTTAGTGTGC-A-TTT
1 GAAATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGACT
* * *
23967140 GGGAATAGCTTCGGCTATATATGGCACTTAGTGTGTGAGACT
1 -GAAATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGACT
* * * *
23967182 GAGATAGCTTCGGCTATGTAAGGTACTTAGTGTGCGGGA-T
1 GAAATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGACT
*
23967222 TATAATAGCTTCGGCTATA
1 GA-AATAGCTTCGGCTATA
23967241 CGATGGTATT
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
40 34 0.41
41 47 0.57
42 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (41 bp):
GAAATAGCTTCGGCTATATAAGGCACTTAGTGTGCGAGACT
Found at i:23979474 original size:27 final size:27
Alignment explanation
Indices: 23979444--23979576 Score: 167
Period size: 27 Copynumber: 4.9 Consensus size: 27
23979434 AATAAATTAT
**
23979444 CAAAATACCCCCATAGATTAAAATGAC
1 CAAAATACCCCCATAGGGTAAAATGAC
* * *
23979471 CAAAATACCCCTATAGGGTAAGATAAC
1 CAAAATACCCCCATAGGGTAAAATGAC
** *
23979498 TGAAATACTCCCATAGGGTAAAATGAC
1 CAAAATACCCCCATAGGGTAAAATGAC
* * *
23979525 TAAAATACCCACATAAGGTAAAATGAC
1 CAAAATACCCCCATAGGGTAAAATGAC
23979552 CAAAATACCCCCATAGGGTAAAATG
1 CAAAATACCCCCATAGGGTAAAATG
23979577 GGTGTTATAC
Statistics
Matches: 88, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.19
Consensus pattern (27 bp):
CAAAATACCCCCATAGGGTAAAATGAC
Found at i:23979807 original size:25 final size:25
Alignment explanation
Indices: 23979773--23979822 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
23979763 TTGCCACATA
*
23979773 TACTGTTACTGGCAGCTTCGCTGCG
1 TACTATTACTGGCAGCTTCGCTGCG
*
23979798 TACTATTACTGGCAGCTTTGCTGCG
1 TACTATTACTGGCAGCTTCGCTGCG
23979823 ATATTGGTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.14, C:0.26, G:0.26, T:0.34
Consensus pattern (25 bp):
TACTATTACTGGCAGCTTCGCTGCG
Found at i:23979978 original size:28 final size:28
Alignment explanation
Indices: 23979932--23980012 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
23979922 CACTGTACTG
* *
23979932 TACTGTATTGGCCTAAGGCCCACACTAT
1 TACTGCATTGGGCTAAGGCCCACACTAT
* *
23979960 TATTGCATTGGGCTAAGGCTCACACTAT
1 TACTGCATTGGGCTAAGGCCCACACTAT
* *
23979988 TACTGTATCGGGCT-AGGCCCACACT
1 TACTGCATTGGGCTAAGGCCCACACT
23980013 GTACTGATAC
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 10 0.22
28 35 0.78
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.28
Consensus pattern (28 bp):
TACTGCATTGGGCTAAGGCCCACACTAT
Found at i:23980033 original size:32 final size:34
Alignment explanation
Indices: 23979988--23980052 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 34
23979978 CTCACACTAT
* *
23979988 TACTGTATCGGGCT-AGGCCCACACTG-TACTGA
1 TACTGAATAGGGCTCAGGCCCACACTGTTACTGA
* *
23980020 TACTGAATAGGGCTCGGGCCCAGACTGTTACTG
1 TACTGAATAGGGCTCAGGCCCACACTGTTACTG
23980053 CAGGTTGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 12 0.44
33 10 0.37
34 5 0.19
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (34 bp):
TACTGAATAGGGCTCAGGCCCACACTGTTACTGA
Found at i:23987403 original size:23 final size:23
Alignment explanation
Indices: 23987375--23987449 Score: 116
Period size: 23 Copynumber: 3.3 Consensus size: 23
23987365 ATAAGTGCCA
23987375 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
* *
23987398 CTCTGATATGTAGCCGTAA-CTAC
1 CACTGAAATGTAGCCG-AAGCTAC
23987421 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
23987444 CACTGA
1 CACTGA
23987450 TCAATAACAC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
22 2 0.04
23 42 0.91
24 2 0.04
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:23988895 original size:25 final size:25
Alignment explanation
Indices: 23988866--23988948 Score: 102
Period size: 25 Copynumber: 3.5 Consensus size: 25
23988856 TGATTTTGGG
23988866 TGTATTAATGTACTAATGGAAAACT
1 TGTATTAATGTACTAATGGAAAACT
* ** *
23988891 TGTATTAATGTAGTTTTGG-CAA--
1 TGTATTAATGTACTAATGGAAAACT
23988913 -GTATTAATGTACTAATGGAAAACT
1 TGTATTAATGTACTAATGGAAAACT
23988937 TGTATTAATGTA
1 TGTATTAATGTA
23988949 GATTTTGGGT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
21 15 0.33
22 2 0.04
24 2 0.04
25 27 0.59
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.40
Consensus pattern (25 bp):
TGTATTAATGTACTAATGGAAAACT
Found at i:23988918 original size:46 final size:47
Alignment explanation
Indices: 23988867--23988956 Score: 173
Period size: 46 Copynumber: 1.9 Consensus size: 47
23988857 GATTTTGGGT
23988867 GTATTAATGTACTAATGGAAAACTTGTATTAATGTAG-TTTTGGCAA
1 GTATTAATGTACTAATGGAAAACTTGTATTAATGTAGATTTTGGCAA
23988913 GTATTAATGTACTAATGGAAAACTTGTATTAATGTAGATTTTGG
1 GTATTAATGTACTAATGGAAAACTTGTATTAATGTAGATTTTGG
23988957 GTGCTCGTGA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 37 0.86
47 6 0.14
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.40
Consensus pattern (47 bp):
GTATTAATGTACTAATGGAAAACTTGTATTAATGTAGATTTTGGCAA
Found at i:23989478 original size:27 final size:27
Alignment explanation
Indices: 23989419--23989505 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
23989409 AGCTGTCAAT
* * **
23989419 AAATGATCGAAATGCCCTTATAGAATA
1 AAATGACCGAAATACCCTTATAGGGTA
*
23989446 AAATGACTGAAATACCCTTATAGGGTA
1 AAATGACCGAAATACCCTTATAGGGTA
* * *
23989473 AGATGACCAAAATTACCC-CATAGGGTA
1 AAATGACCGAAA-TACCCTTATAGGGTA
23989500 AAATGA
1 AAATGA
23989506 GTGTTATACC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
27 44 0.90
28 5 0.10
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (27 bp):
AAATGACCGAAATACCCTTATAGGGTA
Found at i:23989743 original size:26 final size:26
Alignment explanation
Indices: 23989700--23989754 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
23989690 TTTGCCACAT
* *
23989700 ATACTGTTACTGGCAGCTTCGCTACG
1 ATACTATTACTGGAAGCTTCGCTACG
* * *
23989726 ATACTATTATTGGAAGCTTTGCTGCG
1 ATACTATTACTGGAAGCTTCGCTACG
23989752 ATA
1 ATA
23989755 TTGGTGTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (26 bp):
ATACTATTACTGGAAGCTTCGCTACG
Found at i:23989904 original size:28 final size:28
Alignment explanation
Indices: 23989861--23989941 Score: 119
Period size: 28 Copynumber: 2.9 Consensus size: 28
23989851 AACTGTACTG
*
23989861 TACTGTATTGGCCTAAGGCCCACACTAT
1 TACTGTATTGGGCTAAGGCCCACACTAT
* *
23989889 TACTGCATTGGGCTAAGGCTCACACTAT
1 TACTGTATTGGGCTAAGGCCCACACTAT
*
23989917 TACTGTATCGGGCT-AGGCCCACACT
1 TACTGTATTGGGCTAAGGCCCACACT
23989942 GTACTGATAC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 10 0.21
28 37 0.79
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACACTAT
Found at i:23989962 original size:32 final size:34
Alignment explanation
Indices: 23989917--23989981 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 34
23989907 CTCACACTAT
* *
23989917 TACTGTATCGGGCT-AGGCCCACACTG-TACTGA
1 TACTGAATAGGGCTCAGGCCCACACTGTTACTGA
* *
23989949 TACTGAATAGGGCTCGGGCCCAGACTGTTACTG
1 TACTGAATAGGGCTCAGGCCCACACTGTTACTG
23989982 CAGGTTGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 12 0.44
33 10 0.37
34 5 0.19
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.25
Consensus pattern (34 bp):
TACTGAATAGGGCTCAGGCCCACACTGTTACTGA
Found at i:24013281 original size:20 final size:20
Alignment explanation
Indices: 24013247--24013302 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
24013237 AACCCACAAG
* **
24013247 GTATCGATAATTTTTTTATGA
1 GTATCGAT-ATTTTTATAAAA
24013268 GTATCGATATTTTTATAAAA
1 GTATCGATATTTTTATAAAA
24013288 GTATCGATATTTTTA
1 GTATCGATATTTTTA
24013303 AATTGGTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 24 0.75
21 8 0.25
ACGTcount: A:0.32, C:0.05, G:0.12, T:0.50
Consensus pattern (20 bp):
GTATCGATATTTTTATAAAA
Found at i:24013311 original size:20 final size:19
Alignment explanation
Indices: 24013246--24013316 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 19
24013236 AAACCCACAA
**
24013246 GGTATCGATAATTTTTTTAT
1 GGTATCGAT-ATTTTTAAAT
*
24013266 GAGTATCGATATTTTTATAAA
1 G-GTATCGATATTTTTA-AAT
*
24013287 AGTATCGATATTTTTAAATT
1 GGTATCGATATTTTTAAA-T
24013307 GGTATCGATA
1 GGTATCGATA
24013317 CCAAATTGCG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 2 0.05
20 31 0.74
21 9 0.21
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.46
Consensus pattern (19 bp):
GGTATCGATATTTTTAAAT
Found at i:24016409 original size:25 final size:25
Alignment explanation
Indices: 24016360--24016457 Score: 88
Period size: 25 Copynumber: 3.9 Consensus size: 25
24016350 GGATACACAA
* * *
24016360 TAGCTCTCATGAGCTTCCTGTTATT
1 TAGCTCTCATGAGCATCCCGATATT
*
24016385 TAGCTCTTATGAGCATCCCGATATT
1 TAGCTCTCATGAGCATCCCGATATT
* * * *
24016410 TGGTTCTCACGAGCATCCCGATATC
1 TAGCTCTCATGAGCATCCCGATATT
* * * *
24016435 TGGATCTCTTGAGCTTCCCGATA
1 TAGCTCTCATGAGCATCCCGATA
24016458 AATGGCTCGC
Statistics
Matches: 60, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.19, C:0.27, G:0.18, T:0.36
Consensus pattern (25 bp):
TAGCTCTCATGAGCATCCCGATATT
Found at i:24026632 original size:5 final size:5
Alignment explanation
Indices: 24026622--24026646 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24026612 GGTAAGTTTG
24026622 TAAAT TAAAT TAAAT TAAAT TAAAT
1 TAAAT TAAAT TAAAT TAAAT TAAAT
24026647 CAATTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAAAT
Found at i:24028160 original size:27 final size:27
Alignment explanation
Indices: 24028130--24028307 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24028120 ATATTGAGTC
* * * *
24028130 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24028157 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24028184 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24028212 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24028239 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24028266 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24028293 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24028308 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24028269 original size:82 final size:81
Alignment explanation
Indices: 24028151--24028306 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24028141 TGCTATATAA
* *
24028151 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24028216 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24028233 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24028297 CACTTAGTGC
65 CACTTAGTGC
24028307 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24035281 original size:27 final size:27
Alignment explanation
Indices: 24035251--24035428 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
24035241 ATATTGAGTC
* * * *
24035251 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
24035278 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24035305 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
24035333 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
24035360 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
24035387 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
24035414 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24035429 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:24035390 original size:82 final size:81
Alignment explanation
Indices: 24035272--24035427 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24035262 TGCTATATAA
* *
24035272 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24035337 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24035354 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24035418 CACTTAGTGC
65 CACTTAGTGC
24035428 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24036272 original size:45 final size:44
Alignment explanation
Indices: 24036219--24036339 Score: 131
Period size: 45 Copynumber: 2.7 Consensus size: 44
24036209 TGTCACACTA
*
24036219 ACTATGGCACTATATCGGAAATAAATAAGACCATAGTTGAAGGAC
1 ACTATGGCACTATATC-GAAATAAATAAGACCATAGTTGAAAGAC
* * *
24036264 ATTATGGCACTATA-CTAGAATCGAATAAGACCATAGTTGAAAGAC
1 ACTATGGCACTATATCGA-AAT-AAATAAGACCATAGTTGAAAGAC
*
24036309 ACTATGGCA-TCATGTC-AGAATAAATAAGACC
1 ACTATGGCACT-ATATCGA-AATAAATAAGACC
24036340 GGGGATGAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
43 1 0.02
44 14 0.22
45 49 0.75
46 1 0.02
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (44 bp):
ACTATGGCACTATATCGAAATAAATAAGACCATAGTTGAAAGAC
Found at i:24039455 original size:15 final size:15
Alignment explanation
Indices: 24039435--24039464 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
24039425 AATTGGATTA
*
24039435 AGAAAATTATTTAAT
1 AGAAAATTAATTAAT
24039450 AGAAAATTAATTAAT
1 AGAAAATTAATTAAT
24039465 TTAATAAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (15 bp):
AGAAAATTAATTAAT
Found at i:24044291 original size:205 final size:206
Alignment explanation
Indices: 24043939--24044350 Score: 808
Period size: 205 Copynumber: 2.0 Consensus size: 206
24043929 GGATGAATAC
24043939 TGCTAGCTTTGATTTATACATAAGTCCTATGTCACTTATGCGAGATAATGGTTTTGTTGGTCTTT
1 TGCTAGCTTTGATTTATACATAAGTCCTATGTCACTTATGCGAGATAATGGTTTTGTTGGTCTTT
24044004 TGATTTTGCATTCATAGTAAACTTTAAAGAGCTGACTCTCTGATGCTGTTGCTTCTGTTCAGTTG
66 TGATTTTGCATTCATAGTAAACTTTAAAGAGCTGACTCTCTGATGCTGTTGCTTCTGTTCAGTTG
24044069 TGTTGTAAGGTGAAGCAGCTTTTAGACTTCAGAGTTCAGA-CATGTTTGATGGTTCTAAAATGGG
131 TGTTGTAAGGTGAAGCAGCTTTTAGACTTCAGAGTTCAGACCATGTTTGATGGTTCTAAAATGGG
24044133 GAGTAAATTGG
196 GAGTAAATTGG
24044144 TGCTAGCTTTGATTTATACATAAGTCCTATGTCACTTATGCGAGATAATGGTTTTGTTGGTCTTT
1 TGCTAGCTTTGATTTATACATAAGTCCTATGTCACTTATGCGAGATAATGGTTTTGTTGGTCTTT
*
24044209 TGATTTTGCATTCATAGTACACTTTAAAGAGCTGACTCTCTGATGCTGTTGCTTCTGTTCAGTTG
66 TGATTTTGCATTCATAGTAAACTTTAAAGAGCTGACTCTCTGATGCTGTTGCTTCTGTTCAGTTG
24044274 TGTTGTAAGGTGAAGCAGCTTTTAGACTTCAGAGTTCAGACCATGTTTGATGGTTCTAAAATGGG
131 TGTTGTAAGGTGAAGCAGCTTTTAGACTTCAGAGTTCAGACCATGTTTGATGGTTCTAAAATGGG
24044339 GAGTAAATTGG
196 GAGTAAATTGG
24044350 T
1 T
24044351 TTTTCTTCTT
Statistics
Matches: 205, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
205 169 0.82
206 36 0.18
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.40
Consensus pattern (206 bp):
TGCTAGCTTTGATTTATACATAAGTCCTATGTCACTTATGCGAGATAATGGTTTTGTTGGTCTTT
TGATTTTGCATTCATAGTAAACTTTAAAGAGCTGACTCTCTGATGCTGTTGCTTCTGTTCAGTTG
TGTTGTAAGGTGAAGCAGCTTTTAGACTTCAGAGTTCAGACCATGTTTGATGGTTCTAAAATGGG
GAGTAAATTGG
Found at i:24045912 original size:25 final size:25
Alignment explanation
Indices: 24045883--24045938 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
24045873 CTATTTCATG
24045883 TATTTTGTAATTGATATTTTTATTT
1 TATTTTGTAATTGATATTTTTATTT
24045908 TATTTTGTAATTGATATTTTTATTT
1 TATTTTGTAATTGATATTTTTATTT
24045933 TATTTT
1 TATTTT
24045939 CTTTCATGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (25 bp):
TATTTTGTAATTGATATTTTTATTT
Found at i:24054109 original size:93 final size:93
Alignment explanation
Indices: 24053991--24054203 Score: 338
Period size: 93 Copynumber: 2.3 Consensus size: 93
24053981 AGCCTTGTTA
*
24053991 TCTTTAGCTTTACTGATCTTCTTCTTGTTCTTCTTCTCGGTTTTCTCTTCGACAACTTCCGGAAT
1 TCTTTAGCTTTACTGATCTTCTTCTTGTTCTTCTTCTCGGTTTTCTCTTCGACAACTTCCGAAAT
**
24054056 TTGTGAATCCC-TTGGAGGTTCAACAGAT
66 TAATGAA-CCCTTTGGAGGTTCAACAGAT
* * * *
24054084 TCTTCAGCTTTACTGATCTTTTTCTTGTTCTTCTTCTCTGTTTTCTCTTGGACAACTTCCGAAAT
1 TCTTTAGCTTTACTGATCTTCTTCTTGTTCTTCTTCTCGGTTTTCTCTTCGACAACTTCCGAAAT
24054149 TAATGAACCCTTTGGAGGTTCAACAGAT
66 TAATGAACCCTTTGGAGGTTCAACAGAT
*
24054177 TCTTTAGCTTTGCTGATCTTCTTCTTG
1 TCTTTAGCTTTACTGATCTTCTTCTTG
24054204 GTTTTCTCTT
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
92 3 0.03
93 106 0.97
ACGTcount: A:0.16, C:0.23, G:0.15, T:0.46
Consensus pattern (93 bp):
TCTTTAGCTTTACTGATCTTCTTCTTGTTCTTCTTCTCGGTTTTCTCTTCGACAACTTCCGAAAT
TAATGAACCCTTTGGAGGTTCAACAGAT
Found at i:24063320 original size:277 final size:277
Alignment explanation
Indices: 24062826--24063333 Score: 626
Period size: 277 Copynumber: 1.8 Consensus size: 277
24062816 ACAACATTTA
* * ** *
24062826 TGTCATATTAAGGCTCTCGGGATAAAAATTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
1 TGTCATATTAAAGCTCTCAGGATAAAAACCGCAGCCTCCAACACAGCTAGCGAGAGCAAAGCTCC
* ** * * * * * * *
24062891 CAACTATCTTATTAAGGCTCGTAGGTGAAGAGCCATAACCTTCAACACAGTTAGCGAGAGTAAAG
66 CAACTATCATATTAAAACTCGCAGGTGAAAAACCACAACCTCCAACACAGTTAGCGAAAGCAAAG
* * * * * * * * *
24062956 CTCCCAACTGTCATATTAAGGCTTGTAGGTGAAGAGTTACAGTCTTCAACACAGTTAGTGAGAGC
131 CTCCCAACAGTCATACTAAGGCTCGCAGGTGAAAAATCACAGCCTCCAACACAGTTAGTGAGAGC
* *
24063021 AAAGCTCCCAGCTGTTATATTAAGGCTCGTAGGATAAAAATCATAGCCTCTAATATAGTTAGCAA
196 AAAGCTCCCAACTGTCATATTAAGGCTCGTAGGATAAAAATCATAGCCTCTAATATAGTTAGCAA
24063086 GAGTAAAGTTCCCAGTT
261 GAGTAAAGTTCCCAGTT
* * * *
24063103 TGTCATATTAAAGCTCGT-AGGATAAAAACCGCAGCCTCTAATATAGCTAGTGAGAGCAAAGCTC
1 TGTCATATTAAAGCTC-TCAGGATAAAAACCGCAGCCTCCAACACAGCTAGCGAGAGCAAAGCTC
* *
24063167 CCAACTGTCATATTAAAACTCGCAGGAT-AAAAACCACAACCTCCAACATAGTTAGCGAAAGCAA
65 CCAACTATCATATTAAAACTCGCAGG-TGAAAAACCACAACCTCCAACACAGTTAGCGAAAGCAA
* ** * *
24063231 AGCTCTCAACAGTCATACTAAGGCTCGCAGGAT-AAAAATCGTAGCCTCCAATATAGTTAGTGAG
129 AGCTCCCAACAGTCATACTAAGGCTCGCAGG-TGAAAAATCACAGCCTCCAACACAGTTAGTGAG
*
24063295 AGTAAAGCTCCCAACTGTCATATTAAGGCTCGTAGGATA
193 AGCAAAGCTCCCAACTGTCATATTAAGGCTCGTAGGATA
24063334 TAAACCGTTT
Statistics
Matches: 190, Mismatches: 38, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
277 187 0.98
278 3 0.02
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (277 bp):
TGTCATATTAAAGCTCTCAGGATAAAAACCGCAGCCTCCAACACAGCTAGCGAGAGCAAAGCTCC
CAACTATCATATTAAAACTCGCAGGTGAAAAACCACAACCTCCAACACAGTTAGCGAAAGCAAAG
CTCCCAACAGTCATACTAAGGCTCGCAGGTGAAAAATCACAGCCTCCAACACAGTTAGTGAGAGC
AAAGCTCCCAACTGTCATATTAAGGCTCGTAGGATAAAAATCATAGCCTCTAATATAGTTAGCAA
GAGTAAAGTTCCCAGTT
Found at i:24063332 original size:69 final size:69
Alignment explanation
Indices: 24062826--24063421 Score: 505
Period size: 69 Copynumber: 8.6 Consensus size: 69
24062816 ACAACATTTA
* ***
24062826 TGTCATATTAAGGCTC-TCGGGATAAAAATTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTC
1 TGTCATATTAAGGCTCGT-AGGATAAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTC
24062890 CCAAC
65 CCAAC
* * * * * * * *
24062895 TATCTTATTAAGGCTCGTAGG-TGAAGAGCCATAACCTTCAACACAGTTAGCGAGAGTAAAGCTC
1 TGTCATATTAAGGCTCGTAGGAT-AAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTC
24062959 CCAAC
65 CCAAC
* * *** * * *
24062964 TGTCATATTAAGGCTTGTAGG-TGAAGAGTTACAGTCTTCAACACAGTTAGTGAGAGCAAAGCTC
1 TGTCATATTAAGGCTCGTAGGAT-AAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTC
*
24063028 CCAGC
65 CCAAC
* * * * * * * * *
24063033 TGTTATATTAAGGCTCGTAGGATAAAAATCATAGCCTCTAATATAGTTAGCAAGAGTAAAGTTCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
**
24063098 CAGTT
66 CA-AC
* * * * * * *
24063103 TGTCATATTAAAGCTCGTAGGATAAAAACCGCAGCCTCTAATATAGCTAGTGAGAGCAAAGCTCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
24063168 CAAC
66 CAAC
** * * * * *
24063172 TGTCATATTAAAACTCGCAGGATAAAAACCACAACCTCCAACATAGTTAGCGAAAGCAAAGCTCT
1 TGTCATATTAAGGCTCGTAGGATAAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
24063237 CAAC
66 CAAC
* * * * ** * * * *
24063241 AGTCATACTAAGGCTCGCAGGATAAAAATCGTAGCCTCCAATATAGTTAGTGAGAGTAAAGCTCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
24063306 CAAC
66 CAAC
* **** **
24063310 TGTCATATTAAGGCTCGTAGGATATAAACCGTTTCCTCCAACACAGTTAGCGAGAGCAAAAATCC
1 TGTCATATTAAGGCTCGTAGGATAAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
24063375 CAAC
66 CAAC
* * * * * * *
24063379 TGCCATACTAAGGCTAGCAGGATAAAGATCACAGCCTCTAACA
1 TGTCATATTAAGGCTCGTAGGATAAAAACCACAGCCTCCAACA
24063422 TAATTTACGA
Statistics
Matches: 423, Mismatches: 100, Indels: 8
0.80 0.19 0.02
Matches are distributed among these distances:
68 1 0.00
69 363 0.86
70 59 0.14
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.23
Consensus pattern (69 bp):
TGTCATATTAAGGCTCGTAGGATAAAAACCACAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
CAAC
Found at i:24063415 original size:138 final size:138
Alignment explanation
Indices: 24062826--24063421 Score: 575
Period size: 138 Copynumber: 4.3 Consensus size: 138
24062816 ACAACATTTA
* * * ** *
24062826 TGTCATATTAAGGCTCTCGGGATAAAAATTGCAGCCTCCAACACAGTTAGCGAGAGCAAAGCTCC
1 TGTCATACTAAGGCTCGCAGGATAAAAATCACAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCC
* * * * * *
24062891 CAACTATCTTATTAAGGCTCGTAGG-TGAAGAGCCATAACCTTCAACACAGTTAGCGAGAGTAAA
66 CAACTGTCATATTAAGGCTCGTAGGAT-AAAAACCATAACCTCCAACACAGTTAGCGAGAGCAAA
24062955 GCTCCCAAC
130 GCTCCCAAC
* * * * * * * *
24062964 TGTCATATTAAGGCTTGTAGG-TGAAGAGTTACAGTCTTCAACACAGTTAGTGAGAGCAAAGCTC
1 TGTCATACTAAGGCTCGCAGGAT-AAAAATCACAGCCTCCAACACAGTTAGTGAGAGCAAAGCTC
* * * * * * * * *
24063028 CCAGCTGTTATATTAAGGCTCGTAGGATAAAAATCATAGCCTCTAATATAGTTAGCAAGAGTAAA
65 CCAACTGTCATATTAAGGCTCGTAGGATAAAAACCATAACCTCCAACACAGTTAGCGAGAGCAAA
* **
24063093 GTTCCCAGTT
130 GCTCCCA-AC
* * * * * * * * *
24063103 TGTCATATTAAAGCTCGTAGGATAAAAACCGCAGCCTCTAATATAGCTAGTGAGAGCAAAGCTCC
1 TGTCATACTAAGGCTCGCAGGATAAAAATCACAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCC
** * * * *
24063168 CAACTGTCATATTAAAACTCGCAGGATAAAAACCACAACCTCCAACATAGTTAGCGAAAGCAAAG
66 CAACTGTCATATTAAGGCTCGTAGGATAAAAACCATAACCTCCAACACAGTTAGCGAGAGCAAAG
*
24063233 CTCTCAAC
131 CTCCCAAC
* ** * * *
24063241 AGTCATACTAAGGCTCGCAGGATAAAAATCGTAGCCTCCAATATAGTTAGTGAGAGTAAAGCTCC
1 TGTCATACTAAGGCTCGCAGGATAAAAATCACAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCC
* * ** *
24063306 CAACTGTCATATTAAGGCTCGTAGGATATAAACCGTTTCCTCCAACACAGTTAGCGAGAGCAAAA
66 CAACTGTCATATTAAGGCTCGTAGGATAAAAACCATAACCTCCAACACAGTTAGCGAGAGCAAAG
*
24063371 ATCCCAAC
131 CTCCCAAC
* * * *
24063379 TGCCATACTAAGGCTAGCAGGATAAAGATCACAGCCTCTAACA
1 TGTCATACTAAGGCTCGCAGGATAAAAATCACAGCCTCCAACA
24063422 TAATTTACGA
Statistics
Matches: 368, Mismatches: 86, Indels: 8
0.80 0.19 0.02
Matches are distributed among these distances:
137 1 0.00
138 259 0.70
139 107 0.29
140 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.23
Consensus pattern (138 bp):
TGTCATACTAAGGCTCGCAGGATAAAAATCACAGCCTCCAACACAGTTAGTGAGAGCAAAGCTCC
CAACTGTCATATTAAGGCTCGTAGGATAAAAACCATAACCTCCAACACAGTTAGCGAGAGCAAAG
CTCCCAAC
Found at i:24067198 original size:10 final size:10
Alignment explanation
Indices: 24067167--24067198 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
24067157 AAGTTAATTG
24067167 ATATTTTTAT
1 ATATTTTTAT
24067177 A-ATTTTT-T
1 ATATTTTTAT
24067185 ATATTTTTAT
1 ATATTTTTAT
24067195 ATAT
1 ATAT
24067199 AAAGTAAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 2 0.10
9 12 0.60
10 6 0.30
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
ATATTTTTAT
Found at i:24067427 original size:3 final size:3
Alignment explanation
Indices: 24067421--24067458 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
24067411 TTCCCCTCTC
24067421 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
24067459 CCAACAAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:24067883 original size:23 final size:24
Alignment explanation
Indices: 24067839--24067884 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
24067829 GACGCCAATT
*
24067839 TTGTTTTATGAATCATATATATTA
1 TTGTTTTATGAATAATATATATTA
24067863 TTGTTTTATGAA-AATATATATT
1 TTGTTTTATGAATAATATATATT
24067885 GCAATTTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (24 bp):
TTGTTTTATGAATAATATATATTA
Found at i:24074435 original size:46 final size:46
Alignment explanation
Indices: 24074368--24074469 Score: 150
Period size: 46 Copynumber: 2.2 Consensus size: 46
24074358 TATTACAAAT
* * **
24074368 TAGTAGTATACCACATGATAACTACAATATTTTCCAAGTGCATAAC
1 TAGTATTACACCACATGATAACTACAATATCATCCAAGTGCATAAC
*
24074414 TAGTATTACACCACATGATAACTACAATATCATCTAAGTGCATAAC
1 TAGTATTACACCACATGATAACTACAATATCATCCAAGTGCATAAC
*
24074460 TAATATTACA
1 TAGTATTACA
24074470 AATTAGTAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (46 bp):
TAGTATTACACCACATGATAACTACAATATCATCCAAGTGCATAAC
Found at i:24074595 original size:19 final size:19
Alignment explanation
Indices: 24074568--24074604 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
24074558 GTCCAAGTGC
*
24074568 ATAACTAGTATTACACCAT
1 ATAACTAGTACTACACCAT
*
24074587 ATAATTAGTACTACACCA
1 ATAACTAGTACTACACCA
24074605 CATTAAAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAACTAGTACTACACCAT
Found at i:24075601 original size:32 final size:32
Alignment explanation
Indices: 24075560--24075620 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
24075550 TGTCAATCAT
24075560 TTCAATATCCAACAAGC-TTAAAACATAATAAG
1 TTCAATATCCAACAA-CTTTAAAACATAATAAG
24075592 TTCAATATCCAACAACTTTAAAACATAAT
1 TTCAATATCCAACAACTTTAAAACATAAT
24075621 TTCAAAATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.49, C:0.20, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAACTTTAAAACATAATAAG
Found at i:24075630 original size:29 final size:29
Alignment explanation
Indices: 24075558--24075632 Score: 98
Period size: 32 Copynumber: 2.5 Consensus size: 29
24075548 ATTGTCAATC
24075558 ATTTCAATATCCAACAAGCTTAAAACATA
1 ATTTCAATATCCAACAAGCTTAAAACATA
24075587 ATAAGTTCAATATCCAACAA-CTTTAAAACATA
1 AT---TTCAATATCCAACAAGC-TTAAAACATA
*
24075619 ATTTCAAAATCCAA
1 ATTTCAATATCCAA
24075633 TAAACTAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
29 13 0.32
31 1 0.02
32 27 0.66
ACGTcount: A:0.49, C:0.20, G:0.03, T:0.28
Consensus pattern (29 bp):
ATTTCAATATCCAACAAGCTTAAAACATA
Found at i:24075641 original size:21 final size:21
Alignment explanation
Indices: 24075612--24075654 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
24075602 AACAACTTTA
24075612 AAACATAATTTCAAAATCCAAT
1 AAACATAATTTCAAAAT-CAAT
*
24075634 AAAC-TAATTTCAATATCAAT
1 AAACATAATTTCAAAATCAAT
24075654 A
1 A
24075655 TCTAACCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 11 0.55
22 4 0.20
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.30
Consensus pattern (21 bp):
AAACATAATTTCAAAATCAAT
Found at i:24084723 original size:23 final size:23
Alignment explanation
Indices: 24084701--24084773 Score: 65
Period size: 23 Copynumber: 3.5 Consensus size: 23
24084691 TTTTTATTAT
24084701 TGTGA-TATATGCTTAAATGTTA
1 TGTGACTATATGCTTAAATGTTA
24084723 TGTGACTATATG-----A-G-TA
1 TGTGACTATATGCTTAAATGTTA
24084739 TTGTGA-TATATGCTTAAATGTTA
1 -TGTGACTATATGCTTAAATGTTA
*
24084762 TGTGATTATATG
1 TGTGACTATATG
24084774 AGTGTTGTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 19
0.68 0.00 0.32
Matches are distributed among these distances:
16 8 0.20
17 6 0.15
18 1 0.02
21 1 0.02
22 11 0.27
23 14 0.34
ACGTcount: A:0.30, C:0.04, G:0.21, T:0.45
Consensus pattern (23 bp):
TGTGACTATATGCTTAAATGTTA
Found at i:24084799 original size:40 final size:39
Alignment explanation
Indices: 24084698--24084835 Score: 204
Period size: 39 Copynumber: 3.5 Consensus size: 39
24084688 TGTTTTTTAT
*
24084698 TATTGTGATATATGCTTAAATGTTATGTGACTATATGAG
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATGAG
24084737 TATTGTGATATATGCTTAAATGTTATGTGATTATATGAG
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATGAG
* * * * *
24084776 TGTTGTTTATATATTCTTAAATGTTATGTGATTACATGTG
1 TATTG-TGATATATGCTTAAATGTTATGTGATTATATGAG
*
24084816 TAATGTGATATATGCTTAAA
1 TATTGTGATATATGCTTAAA
24084836 AGTGAATATG
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
39 55 0.62
40 33 0.38
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.46
Consensus pattern (39 bp):
TATTGTGATATATGCTTAAATGTTATGTGATTATATGAG
Found at i:24096513 original size:42 final size:42
Alignment explanation
Indices: 24096447--24096544 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
24096437 TGCGGATCTT
* * * * *
24096447 CACAACTCGTGTAAGCAGCGTCGTGTAGCTAATATTCTAACC
1 CACAGCTCGTGTGAGCAACATCGTGTAGCTAACATTCTAACC
24096489 CACAGCTCGTGTGAGCAACATCGTGTAGCTAACATTCTAACC
1 CACAGCTCGTGTGAGCAACATCGTGTAGCTAACATTCTAACC
*
24096531 CACAGCTTGTGTGA
1 CACAGCTCGTGTGA
24096545 ATAGGCCCAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.26
Consensus pattern (42 bp):
CACAGCTCGTGTGAGCAACATCGTGTAGCTAACATTCTAACC
Found at i:24098425 original size:23 final size:23
Alignment explanation
Indices: 24098399--24098519 Score: 172
Period size: 23 Copynumber: 5.3 Consensus size: 23
24098389 ATAAGTGTCA
24098399 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
*
24098422 CACTGATATGTAGCCGTAA-CTAC
1 CACTGAAATGTAGCCG-AAGCTAC
*
24098445 CACTGAAATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
*
24098468 CACTGAAATGTAGCTGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
* * *
24098491 CGCTAAAATGAAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
24098514 CACTGA
1 CACTGA
24098520 TCAATAACAC
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
22 1 0.01
23 82 0.96
24 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:24117570 original size:23 final size:23
Alignment explanation
Indices: 24117509--24117578 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
24117499 TCATTAACAT
*
24117509 TGTTCATAAACATGTTCAATTATA
1 TGTTCATAAACATGTTCGATTA-A
* *
24117533 TGTTCATAAAGATGTTCGTTTAA
1 TGTTCATAAACATGTTCGATTAA
* *
24117556 TGTTCGTGAACATGTTCGATTAA
1 TGTTCATAAACATGTTCGATTAA
24117579 GTTAAATGAA
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 20 0.51
24 19 0.49
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.41
Consensus pattern (23 bp):
TGTTCATAAACATGTTCGATTAA
Found at i:24122876 original size:12 final size:12
Alignment explanation
Indices: 24122859--24122884 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24122849 GTTCTCTTAC
24122859 ATTGGCAATATT
1 ATTGGCAATATT
24122871 ATTGGCAATATT
1 ATTGGCAATATT
24122883 AT
1 AT
24122885 CTATGTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATTGGCAATATT
Found at i:24128069 original size:43 final size:42
Alignment explanation
Indices: 24127962--24128087 Score: 121
Period size: 43 Copynumber: 3.0 Consensus size: 42
24127952 TAGAATGCCA
* *
24127962 ACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGCC
1 ACGTCCCAGACGTGGTCTTACATGTAAACACATATCGAAGCC
* *
24128004 ACTATCCCAGACAG-GGTCTTACATGTAAACACA-AGTTGAAGCC
1 AC-GTCCCAGAC-GTGGTCTTACATGTAAACACATA-TCGAAGCC
* * ***
24128047 GACGTCCTAGACGTGGTATTACACAAAAACACATATCGAAG
1 -ACGTCCCAGACGTGGTCTTACATGTAAACACATATCGAAG
24128088 GTCCTATGTC
Statistics
Matches: 67, Mismatches: 11, Indels: 11
0.75 0.12 0.12
Matches are distributed among these distances:
42 4 0.06
43 59 0.88
44 4 0.06
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (42 bp):
ACGTCCCAGACGTGGTCTTACATGTAAACACATATCGAAGCC
Found at i:24149867 original size:46 final size:46
Alignment explanation
Indices: 24149809--24149993 Score: 239
Period size: 46 Copynumber: 4.0 Consensus size: 46
24149799 ACATTGCTAT
* *
24149809 AACTCAGTATGGTTTTCTTCAC-GAAAATACCATACCTACTTTTCAC
1 AACTAAGTATGGTTTTCTTCACTG-AAACACCATACCTACTTTTCAC
* *
24149855 AACTAAGTATGGTTTTCTTCACTGAAGCACCATACCTACATTTCAC
1 AACTAAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* **
24149901 AACTCAGTATGGTTTTCTTCACTGAAACACCATAAATACTTTTCAC
1 AACTAAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* * * *
24149947 AACTCAA-TATGGTTTCCTTCATTGAAATACCATACCTACGTTTCAC
1 AACT-AAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
24149993 A
1 A
24149994 CTTTTCCATG
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
46 119 0.98
47 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.34
Consensus pattern (46 bp):
AACTAAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:24149967 original size:92 final size:92
Alignment explanation
Indices: 24149809--24149993 Score: 266
Period size: 92 Copynumber: 2.0 Consensus size: 92
24149799 ACATTGCTAT
* ** *
24149809 AACTCAGTATGGTTTTCTTCACGAAAATACCATACCTACTTTTCACAACTAAGTATGGTTTTCTT
1 AACTCAGTATGGTTTTCTTCACGAAAACACCATAAATACTTTTCACAACTAAGTATGGTTTCCTT
*
24149874 CACTGAAGCACCATACCTACATTTCAC
66 CACTGAAACACCATACCTACATTTCAC
24149901 AACTCAGTATGGTTTTCTTCACTG-AAACACCATAAATACTTTTCACAACTCAA-TATGGTTTCC
1 AACTCAGTATGGTTTTCTTCAC-GAAAACACCATAAATACTTTTCACAACT-AAGTATGGTTTCC
* * *
24149964 TTCATTGAAATACCATACCTACGTTTCAC
64 TTCACTGAAACACCATACCTACATTTCAC
24149993 A
1 A
24149994 CTTTTCCATG
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
92 80 0.96
93 3 0.04
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.34
Consensus pattern (92 bp):
AACTCAGTATGGTTTTCTTCACGAAAACACCATAAATACTTTTCACAACTAAGTATGGTTTCCTT
CACTGAAACACCATACCTACATTTCAC
Found at i:24151261 original size:16 final size:17
Alignment explanation
Indices: 24151215--24151262 Score: 62
Period size: 17 Copynumber: 2.9 Consensus size: 17
24151205 AAATTCTTTT
*
24151215 TAAATCAGAAAATTCAA
1 TAAATCACAAAATTCAA
*
24151232 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
24151249 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
24151263 TTCTAAATTC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 7 0.25
17 21 0.75
ACGTcount: A:0.54, C:0.17, G:0.02, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:24158332 original size:43 final size:42
Alignment explanation
Indices: 24158272--24158491 Score: 165
Period size: 43 Copynumber: 5.0 Consensus size: 42
24158262 TCTCGTATAA
* * *
24158272 CACATA-CAATGCCATATCCCAGATATGGTCTTACATGTTAT
1 CACATATCGATGCCATATCCCAGATATGGTCTTACACGTAAT
* *
24158313 CACATATCGATGCCAATATCCCAGCTATGGTCTTACACGAAAT
1 CACATATCGATGCC-ATATCCCAGATATGGTCTTACACGTAAT
* * * *
24158356 CACATAACGATGCCAATGTCCTAGACATGGTGGTCTTACACGTAAT
1 CACATATCGATGCC-ATATCCCAG--AT-ATGGTCTTACACGTAAT
* * * *
24158402 CACATATATCGATGCCATATCTCAAATATGGTCTGACAC-AAAGT
1 CAC--ATATCGATGCCATATCCCAGATATGGTCTTACACGTAA-T
* * * * * *
24158446 CTTATATATCGATGCCATAGCCTAGCTATGGTCTTATACGAAAT
1 C--ACATATCGATGCCATATCCCAGATATGGTCTTACACGTAAT
24158490 CA
1 CA
24158492 TGTAATGCCA
Statistics
Matches: 141, Mismatches: 27, Indels: 21
0.75 0.14 0.11
Matches are distributed among these distances:
41 6 0.04
42 7 0.05
43 47 0.33
44 41 0.29
45 6 0.04
46 19 0.13
47 5 0.04
48 10 0.07
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
CACATATCGATGCCATATCCCAGATATGGTCTTACACGTAAT
Found at i:24166540 original size:51 final size:50
Alignment explanation
Indices: 24166414--24166599 Score: 248
Period size: 51 Copynumber: 3.7 Consensus size: 50
24166404 CATTCGATAT
* * *
24166414 ACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAG-TTTTATGGTCC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTTT-CGGTAC
*
24166464 ACGTAGTAGCCTTCACATAGTACTACAAACGTGACCAAAGATTTTCGGTAC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGATTTTCGGTAC
* * * ** *
24166515 ACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATAC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTT-TCGGTAC
24166566 ACGTAGTAGCCTTCACATAGTACTACACACGTGA
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGA
24166600 TCATCGATAC
Statistics
Matches: 119, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
50 39 0.33
51 76 0.64
52 4 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (50 bp):
ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTTTCGGTAC
Found at i:24166541 original size:26 final size:26
Alignment explanation
Indices: 24166512--24166594 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
24166502 AGATTTTCGG
24166512 TACACATAGTAGCCTTCACTTAGTAC
1 TACACATAGTAGCCTTCACTTAGTAC
*
24166538 TACACAT-GT-GACCATT-ATTTA-T-C
1 TACACATAGTAG-CC-TTCACTTAGTAC
* *
24166561 GATACACGTAGTAGCCTTCACATAGTAC
1 --TACACATAGTAGCCTTCACTTAGTAC
24166589 TACACA
1 TACACA
24166595 CGTGATCATC
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
23 1 0.02
24 2 0.05
25 16 0.37
26 21 0.49
27 2 0.05
28 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
TACACATAGTAGCCTTCACTTAGTAC
Found at i:24166598 original size:102 final size:101
Alignment explanation
Indices: 24166417--24166599 Score: 278
Period size: 102 Copynumber: 1.8 Consensus size: 101
24166407 TCGATATACG
* *
24166417 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTATGGTCCACGTAGTAGCCTTCACAT
1 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTATGATACACGTAGTAGCCTTCACAT
24166482 AGTACTACAAACGTGACCAAAGATTTTCGGTACACA
66 AGTACTACAAACGTGACCAAAGATTTTCGGTACACA
* * * *
24166518 TAGTAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTATCGATACACGTAGTAGCCTTCAC
1 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTAT-GATACACGTAGTAGCCTTCAC
*
24166582 ATAGTACTACACACGTGA
64 ATAGTACTACAAACGTGA
24166600 TCATCGATAC
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 3 0.04
101 34 0.47
102 36 0.49
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (101 bp):
TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTATGATACACGTAGTAGCCTTCACAT
AGTACTACAAACGTGACCAAAGATTTTCGGTACACA
Found at i:24174138 original size:51 final size:50
Alignment explanation
Indices: 24174012--24174197 Score: 241
Period size: 51 Copynumber: 3.7 Consensus size: 50
24174002 CATTCGATAT
* * *
24174012 ACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTTTATGGTCC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTTTT-CGGTAC
*
24174062 ACGTAGTAGCCTTCACATAGTACTACAAACGTGACCAAAGCTTTTCGGTAC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAG-TTTTCGGTAC
* * * * *
24174113 ACATAGTAGCCTTCACTTAGTACTACACATGTGACCATTA-TTTATCGATAC
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGTTT-TCGGTAC
24174164 ACGTAGTAGCCTTCACATAGTACTACACACGTGA
1 ACGTAGTAGCCTTCACATAGTACTACACACGTGA
24174198 TCATCGATAC
Statistics
Matches: 119, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
50 37 0.31
51 77 0.65
52 5 0.04
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (50 bp):
ACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGTTTTCGGTAC
Found at i:24174139 original size:26 final size:26
Alignment explanation
Indices: 24174110--24174192 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
24174100 AGCTTTTCGG
24174110 TACACATAGTAGCCTTCACTTAGTAC
1 TACACATAGTAGCCTTCACTTAGTAC
*
24174136 TACACAT-GT-GACCATT-ATTTA-T-C
1 TACACATAGTAG-CC-TTCACTTAGTAC
* *
24174159 GATACACGTAGTAGCCTTCACATAGTAC
1 --TACACATAGTAGCCTTCACTTAGTAC
24174187 TACACA
1 TACACA
24174193 CGTGATCATC
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
23 1 0.02
24 2 0.05
25 16 0.37
26 21 0.49
27 2 0.05
28 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
TACACATAGTAGCCTTCACTTAGTAC
Found at i:24174196 original size:102 final size:101
Alignment explanation
Indices: 24174015--24174197 Score: 278
Period size: 102 Copynumber: 1.8 Consensus size: 101
24174005 TCGATATACG
* *
24174015 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTATGGTCCACGTAGTAGCCTTCACAT
1 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTATGATACACGTAGTAGCCTTCACAT
24174080 AGTACTACAAACGTGACCAAAGCTTTTCGGTACACA
66 AGTACTACAAACGTGACCAAAGCTTTTCGGTACACA
* * * *
24174116 TAGTAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTATCGATACACGTAGTAGCCTTCAC
1 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGT-TTTAT-GATACACGTAGTAGCCTTCAC
*
24174180 ATAGTACTACACACGTGA
64 ATAGTACTACAAACGTGA
24174198 TCATCGATAC
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
100 3 0.04
101 34 0.47
102 36 0.49
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (101 bp):
TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTATGATACACGTAGTAGCCTTCACAT
AGTACTACAAACGTGACCAAAGCTTTTCGGTACACA
Found at i:24178042 original size:42 final size:42
Alignment explanation
Indices: 24177996--24178094 Score: 119
Period size: 42 Copynumber: 2.4 Consensus size: 42
24177986 TGTCATCACT
**
24177996 CGTGTAACTCACTGAGTTGTCC-CACACACCCATGTGTCAGGC
1 CGTGTAACTCACTGAGTTG-CCACACACACCCATGTACCAGGC
* * * *
24178038 CGTGTAACTCTCTAAGTTGCCACACACGCCCGTGTACCAGGC
1 CGTGTAACTCACTGAGTTGCCACACACACCCATGTACCAGGC
*
24178080 CGTGTAATTCACTGA
1 CGTGTAACTCACTGA
24178095 CTTGAAACGC
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
41 2 0.04
42 45 0.96
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.24
Consensus pattern (42 bp):
CGTGTAACTCACTGAGTTGCCACACACACCCATGTACCAGGC
Found at i:24178738 original size:38 final size:38
Alignment explanation
Indices: 24178670--24178764 Score: 129
Period size: 38 Copynumber: 2.5 Consensus size: 38
24178660 CGTCGACATC
* **
24178670 AAGCCTGCTAGGAACTAAGTCTGAATAACACCGGCAGT
1 AAGCCTGCTAGGCACTAAGTCTGAATAACACCGGCACA
* *
24178708 AAGCCTGCTAGGCACTCAG-CTTAATAAACACCGGCACA
1 AAGCCTGCTAGGCACTAAGTCTGAAT-AACACCGGCACA
24178746 AAGCCTGCTAGGCACTAAG
1 AAGCCTGCTAGGCACTAAG
24178765 CCCGATAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
37 5 0.10
38 45 0.90
ACGTcount: A:0.34, C:0.27, G:0.22, T:0.17
Consensus pattern (38 bp):
AAGCCTGCTAGGCACTAAGTCTGAATAACACCGGCACA
Found at i:24192135 original size:17 final size:17
Alignment explanation
Indices: 24192112--24192170 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
24192102 TAAGTCTAAG
24192112 AAAAT-AACAATAAAA-A
1 AAAATAAAC-ATAAAAGA
*
24192128 ACAAATAAACATAAAATA
1 A-AAATAAACATAAAAGA
*
24192146 AACATAAACATAAAAGA
1 AAAATAAACATAAAAGA
24192163 AAAATAAA
1 AAAATAAA
24192171 AAGAAAACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.03
17 31 0.84
18 5 0.14
ACGTcount: A:0.76, C:0.08, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAATAAACATAAAAGA
Found at i:24192144 original size:11 final size:11
Alignment explanation
Indices: 24192130--24192159 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
24192120 AATAAAAAAC
24192130 AAATAAACATA
1 AAATAAACATA
24192141 AAATAAACATA
1 AAATAAACATA
24192152 AACATAAA
1 AA-ATAAA
24192160 AGAAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (11 bp):
AAATAAACATA
Found at i:24192177 original size:17 final size:16
Alignment explanation
Indices: 24192112--24192177 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
24192102 TAAGTCTAAG
*
24192112 AAAATAACAATAAAAA
1 AAAATAAAAATAAAAA
*
24192128 ACAAATAAACATAAAATA
1 A-AAATAAAAATAAAA-A
* *
24192146 AACATAAACATAAAAGA
1 AAAATAAAAATAAAA-A
*
24192163 AAAATAAAAAGAAAA
1 AAAATAAAAATAAAA
24192178 CAAATAAACT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
16 1 0.02
17 38 0.93
18 2 0.05
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAATAAAAATAAAAA
Found at i:24193861 original size:15 final size:15
Alignment explanation
Indices: 24193841--24193907 Score: 70
Period size: 15 Copynumber: 4.5 Consensus size: 15
24193831 ACAGAGGAAG
24193841 AAAATAAAAATAAAT
1 AAAATAAAAATAAAT
24193856 AAAAT---AATAAAT
1 AAAATAAAAATAAAT
*
24193868 AAGAATAATAATTAAAT
1 AA-AATAA-AAATAAAT
24193885 -AAATAAAAATGAAAT
1 AAAATAAAAAT-AAAT
24193900 AAAATAAA
1 AAAATAAA
24193908 GAAAAGGCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
12 9 0.21
13 3 0.07
14 3 0.07
15 14 0.33
16 8 0.19
17 6 0.14
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (15 bp):
AAAATAAAAATAAAT
Found at i:24193875 original size:28 final size:26
Alignment explanation
Indices: 24193841--24193912 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 26
24193831 ACAGAGGAAG
24193841 AAAATAAAAATAAATAAAATAATAAAT
1 AAAATAAAAATAAATAAAATAA-AAAT
*
24193868 AAGAATAATAATTAAAT-AAATAAAAAT
1 AA-AATAA-AAATAAATAAAATAAAAAT
* *
24193895 GAAAT-AAAATAAAGAAAA
1 AAAATAAAAATAAATAAAA
24193913 GGCTAAAGGA
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
24 6 0.16
25 4 0.11
26 3 0.08
27 7 0.18
28 11 0.29
29 7 0.18
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (26 bp):
AAAATAAAAATAAATAAAATAAAAAT
Found at i:24193885 original size:21 final size:20
Alignment explanation
Indices: 24193842--24193912 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 20
24193832 CAGAGGAAGA
*
24193842 AAATAAAAATAAATAAAATAAT
1 AAATAAAAATAAA-ATAA-AAT
* *
24193864 AAATAAGAATAATAATTAAAT
1 AAATAAAAATAA-AATAAAAT
*
24193885 AAATAAAAATGAAATAAAAT
1 AAATAAAAATAAAATAAAAT
*
24193905 AAAGAAAA
1 AAATAAAA
24193913 GGCTAAAGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
20 14 0.34
21 13 0.32
22 13 0.32
23 1 0.02
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.21
Consensus pattern (20 bp):
AAATAAAAATAAAATAAAAT
Found at i:24195702 original size:38 final size:38
Alignment explanation
Indices: 24195631--24195720 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 38
24195621 CTCTCCGACC
* * ** *
24195631 ACCATGCACACCACATATGAGCTACTTAAGCCCATCCA
1 ACCATGCACACCACATAGGACCTACAAAAGCCCACCCA
24195669 ACCATGCACACCACATAGGACCT-CAAAAGGCCCACCCA
1 ACCATGCACACCACATAGGACCTACAAAA-GCCCACCCA
* *
24195707 ACCCTACACACCAC
1 ACCATGCACACCAC
24195721 TTATGTGGAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
37 3 0.07
38 41 0.93
ACGTcount: A:0.36, C:0.42, G:0.10, T:0.12
Consensus pattern (38 bp):
ACCATGCACACCACATAGGACCTACAAAAGCCCACCCA
Found at i:24206940 original size:18 final size:18
Alignment explanation
Indices: 24206919--24206953 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24206909 CTTTGCATCT
24206919 AACAATCACATTGCTTTA
1 AACAATCACATTGCTTTA
* *
24206937 AACACTCATATTGCTTT
1 AACAATCACATTGCTTT
24206954 TATTCACTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (18 bp):
AACAATCACATTGCTTTA
Found at i:24209114 original size:41 final size:41
Alignment explanation
Indices: 24209057--24209139 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
24209047 TGCTAAGGCC
24209057 ATTACCCTTAGATCTGGAGCACTAGTTAAGGACCTTATATG
1 ATTACCCTTAGATCTGGAGCACTAGTTAAGGACCTTATATG
* *
24209098 ATTACGCTTAGATCTGGAGCGCTAGTTAAGGACCTTATATG
1 ATTACCCTTAGATCTGGAGCACTAGTTAAGGACCTTATATG
24209139 A
1 A
24209140 CTGTTGAGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (41 bp):
ATTACCCTTAGATCTGGAGCACTAGTTAAGGACCTTATATG
Found at i:24213218 original size:9 final size:9
Alignment explanation
Indices: 24213201--24213237 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
24213191 TGAGTTTTCG
24213201 AATTCGAAT
1 AATTCGAAT
*
24213210 AACTCGAAT
1 AATTCGAAT
*
24213219 AATTCGGAT
1 AATTCGAAT
24213228 AATTCGAAT
1 AATTCGAAT
24213237 A
1 A
24213238 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:24213358 original size:30 final size:30
Alignment explanation
Indices: 24213296--24213358 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
24213286 ACTTTTCTCT
* *
24213296 CAAAACTTTTACTCCTTCCCACATTCCCCC
1 CAAAACTTTTACTCCCTCCCACATCCCCCC
24213326 CAAAACTTTTACTCCCCTCCC-C-TCCCCTCC
1 CAAAACTTTTACT-CCCTCCCACATCCCC-CC
24213356 CAA
1 CAA
24213359 CCCCCCAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 4 0.14
30 19 0.66
31 6 0.21
ACGTcount: A:0.22, C:0.51, G:0.00, T:0.27
Consensus pattern (30 bp):
CAAAACTTTTACTCCCTCCCACATCCCCCC
Found at i:24213490 original size:30 final size:31
Alignment explanation
Indices: 24213456--24213515 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
24213446 AAACCTTTTA
*
24213456 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
24213486 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
24213516 TCTCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:24213622 original size:16 final size:17
Alignment explanation
Indices: 24213595--24213652 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 17
24213585 ACTCCTCCTA
24213595 TTTACTTTCCCCCAAACT
1 TTTA-TTTCCCCCAAACT
*
24213613 TTTA-TTCCCCAAAACTT
1 TTTATTTCCCCCAAAC-T
24213630 TTTATTTTCCCCCTAAACT
1 TTTA-TTTCCCCC-AAACT
24213649 TTTA
1 TTTA
24213653 CTTCTCACCC
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
16 10 0.29
17 5 0.15
18 4 0.12
19 11 0.32
20 4 0.12
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTATTTCCCCCAAACT
Found at i:24213635 original size:17 final size:16
Alignment explanation
Indices: 24213601--24213631 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24213591 CCTATTTACT
*
24213601 TTCCCCCAAACTTTTA
1 TTCCCCAAAACTTTTA
24213617 TTCCCCAAAACTTTT
1 TTCCCCAAAACTTTT
24213632 TATTTTCCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (16 bp):
TTCCCCAAAACTTTTA
Found at i:24215928 original size:17 final size:17
Alignment explanation
Indices: 24215906--24215940 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
24215896 ACACAATATT
24215906 TTGAAAATATT-ATTTAA
1 TTGAAAA-ATTAATTTAA
24215923 TTGAAAAATTAATTTAA
1 TTGAAAAATTAATTTAA
24215940 T
1 T
24215941 AAATATAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (17 bp):
TTGAAAAATTAATTTAA
Found at i:24222414 original size:89 final size:90
Alignment explanation
Indices: 24222254--24222423 Score: 213
Period size: 89 Copynumber: 1.9 Consensus size: 90
24222244 AACTTTTTCC
* * * *
24222254 AAAAAAGCAATTAAGCCCCTTCTTATTTTTTACACTTAATTGAGCACTTGAACTTTCAAAATGCA
1 AAAAAAGCAATTAAACCCCTGCTTATTTTTTACACTCAATTGAGCACTTAAACTTTCAAAAT-CA
24222319 TAAAAAAG-GCCCTCAAACTTCTTAAA
65 TAAAAAAGAG-CCTCAAACTTCTTAAA
* * *
24222345 AAAAAAGCAATTAAATCCCTGC-TATTTTTT-CACTCAATTGGGTACTTAAACTTTCAAAAT-AT
1 AAAAAAGCAATTAAACCCCTGCTTATTTTTTACACTCAATTGAGCACTTAAACTTTCAAAATCAT
24222407 ACCAAAAAGAGCCTCAA
66 A--AAAAAGAGCCTCAA
24222424 TTTTTTTCAA
Statistics
Matches: 69, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
87 3 0.04
89 38 0.55
90 9 0.13
91 19 0.28
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (90 bp):
AAAAAAGCAATTAAACCCCTGCTTATTTTTTACACTCAATTGAGCACTTAAACTTTCAAAATCAT
AAAAAAGAGCCTCAAACTTCTTAAA
Found at i:24225362 original size:30 final size:26
Alignment explanation
Indices: 24225308--24225362 Score: 65
Period size: 30 Copynumber: 2.0 Consensus size: 26
24225298 ATTATTCTTA
*
24225308 TATTTTTTATTTTTATACCTTTTATT
1 TATTTTTTATTTTTATACATTTTATT
24225334 TATTTATTTATTTTATTATTACATTTTAT
1 TATTT-TTTA-TTT-TTA-TACATTTTAT
24225363 GATTTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.21
27 4 0.17
28 3 0.12
29 3 0.12
30 9 0.38
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (26 bp):
TATTTTTTATTTTTATACATTTTATT
Found at i:24232981 original size:50 final size:50
Alignment explanation
Indices: 24232918--24233575 Score: 432
Period size: 50 Copynumber: 13.2 Consensus size: 50
24232908 AGTGGAACAA
* * * * *
24232918 ATTAACGCCACAACGGCGAACCTGGCTTCCCCGACATTGTAGTTAAAGAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
* ** * * * * ** * *
24232968 ATTAAAGCTACAACAATGAATCTTACGTCCCAGGCGA-TGCAGTGGAACAA
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATTGCAGTTAAAGAG
** *
24233018 ATTAAAGCCACATTGGTGAATCTTGCTTCCCTGACATTGCAGTTCAAA-AG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTT-AAAGAG
* * * * * * * ** *
24233068 ATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCGA-TGCAGTGGAATAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATTGCAGTTAAAGAG
* * *
24233118 ATTAAAGCCACATCGGTGAATCTGGCTTCCCCGACATTGTAGTTAAAGAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
* * * * * * ** *
24233168 ATTAAAGCTACAACAGTGAATCTTACCTCCCAGGCGA-TGCAGTGGAACAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGAC-ATTGCAGTTAAAGAG
* *
24233218 GTTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
* ** * * * ** *
24233268 ATTAAAGCTACAATAGTGAATCTTACTTCCCTGGC-TGTGCAGTGGAACAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACAT-TGCAGTTAAAGAG
* *
24233318 ATTAAAGCCACATCGGTAAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
* * * * * ** ** *
24233368 ATTAAAGCTACAA-GAATGAATATTACTTCCCTGGTGA-TGCAGTGGAACAG
1 ATTAAAGCCACAACG-GTGAATCTTGCTTCCC-CGACATTGCAGTTAAAGAG
* *
24233418 ATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
* **** * * **** ** *
24233468 ATTAAAGCTACAACAACAAATCTTACTTCCCTGGTGGTGCAGTGGAACAG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
* * * *
24233518 ATTAAAGCCACATCAGTGAATCTCGCTTCCCCGACATTGCAGCTAAA-AGG
1 ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGA-G
24233568 ATTAAAGC
1 ATTAAAGC
24233576 TGCCATAAAG
Statistics
Matches: 443, Mismatches: 150, Indels: 30
0.71 0.24 0.05
Matches are distributed among these distances:
49 10 0.02
50 424 0.96
51 9 0.02
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (50 bp):
ATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAGAG
Found at i:24233070 original size:100 final size:100
Alignment explanation
Indices: 24232896--24233576 Score: 972
Period size: 100 Copynumber: 6.8 Consensus size: 100
24232886 AATCTTATCC
* * * * * * * *
24232896 CCCAAGCGATGCAGTGGAACAAATTAACGCCACAACGGCGAACCTGGCTTCCCCGACATTGTAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
*
24232961 TAAAGAGATTAAAGCTACAACAATGAATCTTACGT
66 TAAAGAGATTAAAGCTACAACAATGAATCTTACTT
* * *
24232996 CCCAGGCGATGCAGTGGAACAAATTAAAGCCACATTGGTGAATCTTGCTTCCCTGACATTGCAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
** *
24233061 TCAAA-AGATTAAAGCTACAACAGCGAATCTTACCT
66 T-AAAGAGATTAAAGCTACAACAATGAATCTTACTT
* * *
24233096 CCCAGGCGATGCAGTGGAATAGATTAAAGCCACATCGGTGAATCTGGCTTCCCCGACATTGTAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
* *
24233161 TAAAGAGATTAAAGCTACAACAGTGAATCTTACCT
66 TAAAGAGATTAAAGCTACAACAATGAATCTTACTT
*
24233196 CCCAGGCGATGCAGTGGAACAGGTTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
* *
24233261 TAAAGAGATTAAAGCTACAATAGTGAATCTTACTT
66 TAAAGAGATTAAAGCTACAACAATGAATCTTACTT
* *
24233296 CCCTGGCTG-TGCAGTGGAACAGATTAAAGCCACATCGGTAAATCTTGCTTCCCCGACATTGCAG
1 CCCAGGC-GATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAG
* *
24233360 TTAAAGAGATTAAAGCTACAAGAATGAATATTACTT
65 TTAAAGAGATTAAAGCTACAACAATGAATCTTACTT
* *
24233396 CCCTGGTGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
* **
24233461 TAAAAAGATTAAAGCTACAACAACAAATCTTACTT
66 TAAAGAGATTAAAGCTACAACAATGAATCTTACTT
* * * * * *
24233496 CCCTGGTGGTGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTCGCTTCCCCGACATTGCAGC
1 CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
24233561 TAAA-AGGATTAAAGCT
66 TAAAGA-GATTAAAGCT
24233577 GCCATAAAGG
Statistics
Matches: 534, Mismatches: 42, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
99 5 0.01
100 525 0.98
101 4 0.01
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (100 bp):
CCCAGGCGATGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGT
TAAAGAGATTAAAGCTACAACAATGAATCTTACTT
Found at i:24234605 original size:23 final size:23
Alignment explanation
Indices: 24234577--24234620 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
24234567 CCTTCCTTAG
* *
24234577 TTTAGGTTTTGTTTTAGTTTTGT
1 TTTAGGGTTTATTTTAGTTTTGT
*
24234600 TTTAGGGTTTATTTTGGTTTT
1 TTTAGGGTTTATTTTAGTTTT
24234621 AAATTCGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.23, T:0.68
Consensus pattern (23 bp):
TTTAGGGTTTATTTTAGTTTTGT
Found at i:24236274 original size:19 final size:19
Alignment explanation
Indices: 24236250--24236287 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
24236240 ACTCACTGAG
24236250 TGTAATGACCCAAATTTAC
1 TGTAATGACCCAAATTTAC
24236269 TGTAATGACCCAAATTTAC
1 TGTAATGACCCAAATTTAC
24236288 CCGGCCTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (19 bp):
TGTAATGACCCAAATTTAC
Found at i:24236809 original size:20 final size:17
Alignment explanation
Indices: 24236766--24236809 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 17
24236756 TTTTGGAAGG
24236766 TGATTCTTTTTTTTCTC
1 TGATTCTTTTTTTTCTC
*
24236783 CGATTCTTTATTCTTTCTAC
1 TGATTCTTT-TT-TTTCT-C
24236803 TGATTCT
1 TGATTCT
24236810 CTCTTCTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 8 0.36
18 2 0.09
19 5 0.23
20 7 0.32
ACGTcount: A:0.11, C:0.20, G:0.07, T:0.61
Consensus pattern (17 bp):
TGATTCTTTTTTTTCTC
Found at i:24237028 original size:22 final size:22
Alignment explanation
Indices: 24236992--24237034 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
24236982 CCTTCTTCAG
* *
24236992 TTTAGGTTTTGTTTTAGTTTTT
1 TTTAGGGTTTATTTTAGTTTTT
*
24237014 TTTAGGGTTTATTTTGGTTTT
1 TTTAGGGTTTATTTTAGTTTT
24237035 AAATTCGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.21, T:0.70
Consensus pattern (22 bp):
TTTAGGGTTTATTTTAGTTTTT
Found at i:24248203 original size:20 final size:20
Alignment explanation
Indices: 24248121--24248258 Score: 73
Period size: 19 Copynumber: 7.2 Consensus size: 20
24248111 GTACGATAAT
**
24248121 TTTTATAAATTTTTTATGGA
1 TTTTATAAATTTTTTATATA
* *
24248141 ATTTAT--ATTTATTTACAT-
1 TTTTATAAATTT-TTTATATA
*
24248159 TTTGTAT-AATTTTCTTACA-A
1 TTT-TATAAATTTT-TTATATA
*
24248179 CTTTATAAATTTTTTATATA
1 TTTTATAAATTTTTTATATA
*
24248199 TTTTACAAA-TTTTTATATA
1 TTTTATAAATTTTTTATATA
* **
24248218 TTTT-T-TATGATTTATATA
1 TTTTATAAATTTTTTATATA
24248236 TTTT-TATAA-TTTTTA-ATA
1 TTTTATA-AATTTTTTATATA
24248254 TTTTA
1 TTTTA
24248259 ATATTTTACT
Statistics
Matches: 91, Mismatches: 16, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
17 1 0.01
18 26 0.29
19 33 0.36
20 31 0.34
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTTATAAATTTTTTATATA
Found at i:24248221 original size:9 final size:9
Alignment explanation
Indices: 24248190--24248266 Score: 63
Period size: 9 Copynumber: 8.6 Consensus size: 9
24248180 TTTATAAATT
24248190 TTTTATATA
1 TTTTATATA
* *
24248199 TTTTACAAA
1 TTTTATATA
24248208 TTTTTATATA
1 -TTTTATATA
*
24248218 TTTTTTATGA
1 TTTTATAT-A
24248228 -TTTATATA
1 TTTTATATA
24248236 TTTT-TATAA
1 TTTTATAT-A
24248245 TTTT-TAATA
1 TTTTAT-ATA
24248254 TTTTA-ATA
1 TTTTATATA
24248262 TTTTA
1 TTTTA
24248267 CTAAAATTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
8 12 0.21
9 34 0.61
10 10 0.18
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (9 bp):
TTTTATATA
Found at i:24248231 original size:28 final size:29
Alignment explanation
Indices: 24248180--24248249 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 29
24248170 TTCTTACAAC
*
24248180 TTTATAAATTTTTTATATATTTTACAAATT
1 TTTAT-AATTTTTTATAGATTTTACAAATT
* *
24248210 TTTATATATTTTTTAT-GA-TTTATATATT
1 TTTATA-ATTTTTTATAGATTTTACAAATT
24248238 TTTATAATTTTT
1 TTTATAATTTTT
24248250 AATATTTTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
27 6 0.17
28 14 0.39
29 2 0.06
30 14 0.39
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (29 bp):
TTTATAATTTTTTATAGATTTTACAAATT
Found at i:24248250 original size:19 final size:19
Alignment explanation
Indices: 24248180--24248257 Score: 74
Period size: 18 Copynumber: 4.1 Consensus size: 19
24248170 TTCTTACAAC
24248180 TTTATAAATTTTT-TATATAT
1 TTTAT-AATTTTTATATAT-T
*
24248200 TTTACAAATTTTTATATATT
1 TTTA-TAATTTTTATATATT
*
24248220 TTT-T-ATGATTTATATATT
1 TTTATAAT-TTTTATATATT
24248238 TTTATAATTTTTA-ATATT
1 TTTATAATTTTTATATATT
24248256 TT
1 TT
24248258 AATATTTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
17 2 0.04
18 20 0.41
19 5 0.10
20 17 0.35
21 5 0.10
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (19 bp):
TTTATAATTTTTATATATT
Found at i:24248262 original size:28 final size:28
Alignment explanation
Indices: 24248180--24248262 Score: 75
Period size: 28 Copynumber: 2.9 Consensus size: 28
24248170 TTCTTACAAC
24248180 TTTATAAATTTTTTATATATTTTACA-A-ATT
1 TTTAT-AA-TTTTTA-ATATTTTA-ATATATT
*
24248210 TTTATATATTTTTTATGA-TTT-ATATATT
1 TTTATA-ATTTTTAAT-ATTTTAATATATT
24248238 TTTATAATTTTTAATATTTTAATAT
1 TTTATAATTTTTAATATTTTAATAT
24248263 TTTACTAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
26 2 0.04
27 12 0.27
28 18 0.40
29 7 0.16
30 6 0.13
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (28 bp):
TTTATAATTTTTAATATTTTAATATATT
Done.