Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 80 of 211
Found at i:24811644 original size:17 final size:17
Alignment explanation
Indices: 24811622--24811659 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
24811612 CTCCAATGAA
24811622 CTTCCAACCCAAACGAG
1 CTTCCAACCCAAACGAG
24811639 CTTCCAACCCAAACGAG
1 CTTCCAACCCAAACGAG
24811656 CTTC
1 CTTC
24811660 TGATTAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.32, C:0.42, G:0.11, T:0.16
Consensus pattern (17 bp):
CTTCCAACCCAAACGAG
Found at i:24812050 original size:30 final size:30
Alignment explanation
Indices: 24812014--24812292 Score: 237
Period size: 30 Copynumber: 9.4 Consensus size: 30
24812004 GTTTGTCACC
*
24812014 ATCCCTTTTCATAGTTTGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTTGATAGTCGAAGCT
* * * * *
24812044 ATCCCTTTTCCTAGTTCGATGGTCGTCA-CC
1 ATCCCTTTTCATAGTTTGATAGTCG-AAGCT
* * * *
24812074 ATCCCTTTTCATTG-TTGATAATCGTCATC-
1 ATCCCTTTTCATAGTTTGATAGTCG-AAGCT
* *
24812103 ATCCCTTTTCATAATTCGATAGTCGAAGCT
1 ATCCCTTTTCATAGTTTGATAGTCGAAGCT
* ** *
24812133 ATCTCTTTTCATTTTTTGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTTGATAGTCGAAGCT
24812163 ATCCCTTTTCATAGTTTGATAGTCGAAGCT
1 ATCCCTTTTCATAGTTTGATAGTCGAAGCT
* * * * *
24812193 ATCCTTTTTCATAATTTGATGGTCGTTA-CC
1 ATCCCTTTTCATAGTTTGATAGTCG-AAGCT
* * * *
24812223 ATCCCTTTTCATTG-TTAATGGTCGTCA-CT
1 ATCCCTTTTCATAGTTTGATAGTCG-AAGCT
* *
24812252 ATCCCTTTTCATATTTTGATAGCCGAAGCT
1 ATCCCTTTTCATAGTTTGATAGTCGAAGCT
24812282 ATCCCTTTTCA
1 ATCCCTTTTCA
24812293 CTGGTCGATG
Statistics
Matches: 199, Mismatches: 43, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
29 49 0.25
30 148 0.74
31 2 0.01
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (30 bp):
ATCCCTTTTCATAGTTTGATAGTCGAAGCT
Found at i:24812254 original size:119 final size:119
Alignment explanation
Indices: 24812008--24812292 Score: 335
Period size: 119 Copynumber: 2.4 Consensus size: 119
24811998 CACAATGTTT
* * * * *
24812008 GTCACCATCCCTTTTCATAGTTTGATAGCCGAAGCTATCCCTTTTCCTAGTTCGATGGTCGTCAC
1 GTCACTATCCCTTTTCATATTTTGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGTCGTAAC
* *
24812073 CATCCCTTTTCATTGTTGATAATCGTCATCATCCCTTTTCATAATTCGATAGTC
66 CATCCCTTTTCATTGTTGATAATCGTCACCATCCCTTTTCATAATTCAATAGTC
* * * *
24812127 G-AAGCTATCTCTTTTCATTTTTTGATAGCCGAAGCTATCCCTTTTCATAGTTTGATAGTCG-AA
1 GTCA-CTATCCCTTTTCATATTTTGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGTCGTAA
* * ** * ** *
24812190 GCTATCCTTTTTCATAAT-TTGATGGTCGTTACCATCCCTTTTCATTGTT-AATGGTC
65 -CCATCCCTTTTCAT--TGTTGATAATCGTCACCATCCCTTTTCATAATTCAATAGTC
24812246 GTCACTATCCCTTTTCATATTTTGATAGCCGAAGCTATCCCTTTTCA
1 GTCACTATCCCTTTTCATATTTTGATAGCCGAAGCTATCCCTTTTCA
24812293 CTGGTCGATG
Statistics
Matches: 139, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
118 2 0.01
119 110 0.79
120 26 0.19
121 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.41
Consensus pattern (119 bp):
GTCACTATCCCTTTTCATATTTTGATAGCCGAAGCTATCCCTTTTCATAGTTCGATAGTCGTAAC
CATCCCTTTTCATTGTTGATAATCGTCACCATCCCTTTTCATAATTCAATAGTC
Found at i:24812284 original size:149 final size:149
Alignment explanation
Indices: 24812014--24812292 Score: 425
Period size: 149 Copynumber: 1.9 Consensus size: 149
24812004 GTTTGTCACC
* *
24812014 ATCCCTTTTCATAGTTTGATAGCCGAAGCTATCCCTTTTCCTAGTTCGATGGTCGTCACCATCCC
1 ATCCCTTTTCATAGTTTGATAGCCGAAGCTATCCCTTTTCATAATTCGATGGTCGTCACCATCCC
* * *
24812079 TTTTCATTGTTGATAATCGTCATCATCCCTTTTCATAATTCGATAGTCGAAGCTATCTCTTTTCA
66 TTTTCATTGTTAATAATCGTCATCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCA
24812144 TTTTTTGATAGCCGAAGCT
131 TTTTTTGATAGCCGAAGCT
* * * *
24812163 ATCCCTTTTCATAGTTTGATAGTCGAAGCTATCCTTTTTCATAATTTGATGGTCGTTACCATCCC
1 ATCCCTTTTCATAGTTTGATAGCCGAAGCTATCCCTTTTCATAATTCGATGGTCGTCACCATCCC
** * *
24812228 TTTTCATTGTTAATGGTCGTCA-CTATCCCTTTTCATATTTTGATAGCCGAAGCTATCCCTTTTC
66 TTTTCATTGTTAATAATCGTCATC-ATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTC
24812292 A
130 A
24812293 CTGGTCGATG
Statistics
Matches: 116, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
148 1 0.01
149 115 0.99
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (149 bp):
ATCCCTTTTCATAGTTTGATAGCCGAAGCTATCCCTTTTCATAATTCGATGGTCGTCACCATCCC
TTTTCATTGTTAATAATCGTCATCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCA
TTTTTTGATAGCCGAAGCT
Found at i:24816348 original size:3 final size:3
Alignment explanation
Indices: 24816342--24816399 Score: 89
Period size: 3 Copynumber: 19.3 Consensus size: 3
24816332 ATATAGTAAT
* * *
24816342 GAG GAG GAG GAG GAG GAG AAG GAA GAG GAG GAG GAA GAG GAG GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG
24816390 GAG GAG GAG G
1 GAG GAG GAG G
24816400 TGGTGGCTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:24819854 original size:49 final size:47
Alignment explanation
Indices: 24819680--24820116 Score: 631
Period size: 47 Copynumber: 8.9 Consensus size: 47
24819670 CCCTTCGGGA
* * * * * *
24819680 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24819727 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24819774 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24819821 CTTACCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24819870 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24819917 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24819966 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24820013 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGG------C--C-ATTAGGC
*
24820071 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
24820117 CGCCATACTG
Statistics
Matches: 362, Mismatches: 13, Indels: 28
0.90 0.03 0.07
Matches are distributed among these distances:
47 185 0.51
49 127 0.35
50 1 0.00
52 1 0.00
55 1 0.00
57 1 0.00
58 46 0.13
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24819876 original size:96 final size:96
Alignment explanation
Indices: 24819680--24820116 Score: 671
Period size: 96 Copynumber: 4.5 Consensus size: 96
24819670 CCCTTCGGGA
* * * * * * * *
24819680 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
24819743 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
24819774 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
24819839 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
24819870 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
24819935 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
24819966 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
24820031 ACTTTCACATTCATCACATCGGCCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGG------C--C-ATTAGGC
*
24820071 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTA
24820117 CGCCATACTG
Statistics
Matches: 319, Mismatches: 11, Indels: 13
0.93 0.03 0.04
Matches are distributed among these distances:
94 46 0.14
96 221 0.69
102 1 0.00
104 1 0.00
105 15 0.05
107 35 0.11
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24820076 original size:58 final size:58
Alignment explanation
Indices: 24819996--24820113 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
24819986 TCACATTCAT
*
24819996 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
1 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGC
*
24820054 CACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGC
1 CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGC
24820112 CA
1 CA
24820114 TTACGCCATA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.30
Consensus pattern (58 bp):
CACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCAGC
Found at i:24831852 original size:21 final size:20
Alignment explanation
Indices: 24831826--24831865 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
24831816 TGTTATGGAT
*
24831826 AAATATACCTAATTCATGAAC
1 AAATAT-CCTAATTAATGAAC
*
24831847 AAATATGCTAATTAATGAA
1 AAATATCCTAATTAATGAA
24831866 TTGATGTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.30
Consensus pattern (20 bp):
AAATATCCTAATTAATGAAC
Found at i:24833619 original size:21 final size:21
Alignment explanation
Indices: 24833593--24833648 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
24833583 AGCAACAGAA
*
24833593 TTCTACCGATAGAACT-GGGAG
1 TTCTACCGATACAACTCGGG-G
* *
24833614 TTCTA-CGAGACAACTCTGGG
1 TTCTACCGATACAACTCGGGG
24833634 TTCTACCGATACAAC
1 TTCTACCGATACAAC
24833649 CTGAACTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (21 bp):
TTCTACCGATACAACTCGGGG
Found at i:24833979 original size:122 final size:122
Alignment explanation
Indices: 24833754--24833981 Score: 298
Period size: 122 Copynumber: 1.9 Consensus size: 122
24833744 GTTATACATA
** *
24833754 TACCTTGAGGACTTCTACTGAAACAAGTCAAAACAGTAGCCAAAGTTCAGCCCCTCCTGCATTTC
1 TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAGCCCCTCCTGCACTTC
* ** ** * **
24833819 TATCGGTACTCTGTTGGGTTCTACCGATACCAGTTGAAACCACCAGAGTTCTACCGC
66 TACCAATACTCTGACGGCTTCTACCGATACCACATGAAACCACCAGAGTTCTACCGC
*
24833876 TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAGCTTCC-CCTGCACTT
1 TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAGC-CCCTCCTGCACTT
* *
24833940 CTACCAATACTTTGACGAGCTT-TACCGATACTACATGAAACC
65 CTACCAATACTCTGACG-GCTTCTACCGATACCACATGAAACC
24833982 CTCAAAGTTG
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 85 0.94
123 5 0.06
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (122 bp):
TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAGCCCCTCCTGCACTTC
TACCAATACTCTGACGGCTTCTACCGATACCACATGAAACCACCAGAGTTCTACCGC
Found at i:24837841 original size:33 final size:34
Alignment explanation
Indices: 24837804--24837868 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
24837794 ATAATGTTAG
*
24837804 CGGATTTGAAGTGTGTAGAATATTTTT-TTAAAA
1 CGGATTTGAAGTGTGTAGAACATTTTTCTTAAAA
*
24837837 CGGATTTGAAGTGTGTAGCACATTTTTCTTAA
1 CGGATTTGAAGTGTGTAGAACATTTTTCTTAA
24837869 GGTTTTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (34 bp):
CGGATTTGAAGTGTGTAGAACATTTTTCTTAAAA
Found at i:24841059 original size:47 final size:47
Alignment explanation
Indices: 24841000--24841094 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
24840990 ATCAATGATG
*
24841000 TAAATGGATACGACACATGTGTTTAGGGTCTAATTGTGAAAATAGAC
1 TAAATGGATACGACACATGTGTTTAGAGTCTAATTGTGAAAATAGAC
*
24841047 TAAATGGGTACGACACATGTGTTTAGAGTCTAATTGTGAAAATAGAC
1 TAAATGGATACGACACATGTGTTTAGAGTCTAATTGTGAAAATAGAC
24841094 T
1 T
24841095 CATTTTAATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.31
Consensus pattern (47 bp):
TAAATGGATACGACACATGTGTTTAGAGTCTAATTGTGAAAATAGAC
Found at i:24842517 original size:21 final size:21
Alignment explanation
Indices: 24842479--24842519 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24842469 TTAGGATAGA
** *
24842479 TGTTTTGAGCTTGTTTAATTG
1 TGTTTTGAGCAGGCTTAATTG
24842500 TGTTTTGAGCAGGCTTAATT
1 TGTTTTGAGCAGGCTTAATT
24842520 CATGAAAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.24, T:0.51
Consensus pattern (21 bp):
TGTTTTGAGCAGGCTTAATTG
Found at i:24852394 original size:61 final size:61
Alignment explanation
Indices: 24852298--24852412 Score: 187
Period size: 61 Copynumber: 1.9 Consensus size: 61
24852288 ACAAACTCTG
* *
24852298 CCTCTAAATAGTTAGTAATCATTAAACCCTATTTGAAAAT-TAGAATCAAGAGTCCACAAAA
1 CCTCTAAATAGTAAGCAATCATTAAACCCTATTTGAAAATCT-GAATCAAGAGTCCACAAAA
*
24852359 CCTCTAAATAGTAAGCAATCATTAAACCCTCTTTGAAAATCTGAATCAAGAGTC
1 CCTCTAAATAGTAAGCAATCATTAAACCCTATTTGAAAATCTGAATCAAGAGTC
24852413 ATTTCATATA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
61 49 0.98
62 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.28
Consensus pattern (61 bp):
CCTCTAAATAGTAAGCAATCATTAAACCCTATTTGAAAATCTGAATCAAGAGTCCACAAAA
Found at i:24855551 original size:20 final size:20
Alignment explanation
Indices: 24855522--24855579 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
24855512 GAAGTGTAAT
* * *
24855522 AGAGGCGCCAGATTGCAAGC
1 AGAGGCGCCAAAGTGCAAAC
*
24855542 AGAGGTGCCAAAGTGCAAAC
1 AGAGGCGCCAAAGTGCAAAC
* *
24855562 AGAGGCACCGAAGTGCAA
1 AGAGGCGCCAAAGTGCAA
24855580 TTCCGTACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.36, C:0.22, G:0.33, T:0.09
Consensus pattern (20 bp):
AGAGGCGCCAAAGTGCAAAC
Found at i:24861382 original size:41 final size:43
Alignment explanation
Indices: 24861279--24861394 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 43
24861269 TTGATTTTAG
* *
24861279 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTTGTCACTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGTCAC-TCAA
* * * * *
24861323 CCTGCTCCATTGCGACTTCAGGGAGATAAGGCTCGTCA-T-GA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGTCACTCAA
* *
24861364 TCTGCTCTACTGCAACTTCAGAGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
24861395 TATGCAATTT
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
41 26 0.44
42 1 0.02
44 32 0.54
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTCGTCACTCAA
Found at i:24861629 original size:50 final size:50
Alignment explanation
Indices: 24861483--24861869 Score: 375
Period size: 50 Copynumber: 7.8 Consensus size: 50
24861473 TGGATCTGTT
* * * * *
24861483 TGCCAGGTAAGTAAGATTCACTATCGTAGCTTTAATCTATTTAACTGCAA
1 TGCCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAA
* * * ** *
24861533 TGTCGGGGAAGCAAGATTCAC-GTTGTAGCTTCAATCTGTTCCACTGCAC
1 TGCCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAA
* *
24861582 CGCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAA
1 TGCCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAA
* ** * ** *
24861632 TGTCAGGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTGCAT
1 TGCCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAA
* * *
24861682 TGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTACAA
1 TGCCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAA
* * * ** * *
24861732 TGTCGGGGAAGCAAGATT-ATCTGTTGTAGCCTCAATCTATTCCACTTCAC
1 TGCCAGGGAAGCAAGATTCA-CTGTTGTAGCTTCAATCTATTTAACTGCAA
* * ** * * *
24861782 CGCCGGGGAAGTC-AGATTTGCTATTGTACCTTCAATCTATTTAACTACAA
1 TGCCAGGGAAG-CAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAA
* * *
24861832 TGTCGGGGAAGCAAGATTCACTGTTATAGCTTCAATCT
1 TGCCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCT
24861870 GTTTCGCTGT
Statistics
Matches: 270, Mismatches: 62, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
49 39 0.14
50 230 0.85
51 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (50 bp):
TGCCAGGGAAGCAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAA
Found at i:24861706 original size:100 final size:100
Alignment explanation
Indices: 24861484--24861872 Score: 548
Period size: 100 Copynumber: 3.9 Consensus size: 100
24861474 GGATCTGTTT
* * * *
24861484 GCCAGGTAAGTAAGATTCACTATCGTAGCTTTAATCTATTTAACTGCAATGTCGGGGAAGCAAGA
1 GCCAGGGAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGA
*
24861549 TTCA-CGTTGTAGCTTCAATCTGTTCCACTGCACC
66 TTCATTGTTGTAGCTTCAATCTGTTCCACTGCACC
* * *
24861583 GCCAGGGAAGTAAGATTCACTGTTGTAGCTTCAATCTATTTAACTGCAATGTCAGGGAAGCAAGA
1 GCCAGGGAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGA
* **
24861648 TTCGTTGTTGTAGCTTCAATCTGTTCCACTGCATT
66 TTCATTGTTGTAGCTTCAATCTGTTCCACTGCACC
* *
24861683 GCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGA
1 GCCAGGGAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGA
* * *
24861748 TT-ATCTGTTGTAGCCTCAATCTATTCCACTTCACC
66 TTCAT-TGTTGTAGCTTCAATCTGTTCCACTGCACC
* * ** *
24861783 GCCGGGGAAGTCAGATTTGCTATTGTACCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGA
1 GCCAGGGAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGA
* *
24861848 TTCACTGTTATAGCTTCAATCTGTT
66 TTCATTGTTGTAGCTTCAATCTGTT
24861873 TCGCTGTAAC
Statistics
Matches: 260, Mismatches: 27, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
99 64 0.25
100 195 0.75
101 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (100 bp):
GCCAGGGAAGTAAGATTCACTATTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGA
TTCATTGTTGTAGCTTCAATCTGTTCCACTGCACC
Found at i:24861901 original size:150 final size:150
Alignment explanation
Indices: 24861484--24861886 Score: 416
Period size: 150 Copynumber: 2.7 Consensus size: 150
24861474 GGATCTGTTT
* * * * * *
24861484 GCCAGGTAAGTAAGATTCACTATCGTAGCTTTAATCTATTTAACTGCAATGTCGGGGAAGCAAGA
1 GCCAGGGAAGCAAGATTCGCTATTGTACCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGA
* * *
24861549 TTCAC-GTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCA-CTGTTGTAGC
66 TTCACTGTTGTAGCTTCAATCTGTTTCACTGCAACGTCAGGGAAGTAAGATT-ATCTGTTGTAGC
* * *
24861612 TTCAATCTATTTAACTGCAAT
130 CTCAATCTATTCAACTGCAAC
* * * * * ** * * * *
24861633 GTCAGGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTGCATTGCCAGGGAAGTAAGA
1 GCCAGGGAAGCAAGATTCGCTATTGTACCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGA
* * * * * * *
24861698 TTCGCTGTTGTAGCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAGATTATCTGTTGTAGCC
66 TTCACTGTTGTAGCTTCAATCTGTTTCACTGCAACGTCAGGGAAGTAAGATTATCTGTTGTAGCC
* * *
24861763 TCAATCTATTCCACTTCACC
131 TCAATCTATTCAACTGCAAC
* * *
24861783 GCCGGGGAAGTC-AGATTTGCTATTGTACCTTCAATCTATTTAACTACAATGTCGGGGAAGCAAG
1 GCCAGGGAAG-CAAGATTCGCTATTGTACCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAG
* * *
24861847 ATTCACTGTTATAGCTTCAATCTGTTTCGCTGTAACGTCA
65 ATTCACTGTTGTAGCTTCAATCTGTTTCACTGCAACGTCA
24861887 TGAAAATAGG
Statistics
Matches: 197, Mismatches: 54, Indels: 5
0.77 0.21 0.02
Matches are distributed among these distances:
149 55 0.28
150 141 0.72
151 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (150 bp):
GCCAGGGAAGCAAGATTCGCTATTGTACCTTCAATCTATTTAACTGCAATGTCGGGGAAGCAAGA
TTCACTGTTGTAGCTTCAATCTGTTTCACTGCAACGTCAGGGAAGTAAGATTATCTGTTGTAGCC
TCAATCTATTCAACTGCAAC
Found at i:24862561 original size:38 final size:37
Alignment explanation
Indices: 24862505--24862577 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 37
24862495 TGAATGAATT
24862505 AATCAAGATAGCAAATTTTTCCAAAAATACAAAATGGG
1 AATCAAGATAGCAAATTTTTCC-AAAATACAAAATGGG
**
24862543 AATCAAGATAGCGTATTTTTCCAAAATACAAAATG
1 AATCAAGATAGCAAATTTTTCCAAAATACAAAATG
24862578 AATGAAATGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
37 13 0.39
38 20 0.61
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (37 bp):
AATCAAGATAGCAAATTTTTCCAAAATACAAAATGGG
Found at i:24873666 original size:137 final size:139
Alignment explanation
Indices: 24873508--24873807 Score: 532
Period size: 141 Copynumber: 2.1 Consensus size: 139
24873498 TAGTAATAGT
24873508 AAGAACATAAAAAAACATAAAACGAATAAAAATCAGATTAAATGTTAAAAATAAATAAAT-AAA-
1 AAGAA-AT-AAAAAACATAAAACGAATAAAAATCAGATTAAATGTTAAAAATAAATAAATAAAAG
24873571 TAAAATATTAAAAGGAATATTTAATAAAACCCTTTTTATTTAAAATAAAACAAACAAATATATAT
64 TAAAATATTAAAAGGAATATTTAATAAAACCCTTTTTATTTAAAATAAAACAAACAAATATATAT
24873636 AAAAGTAAAAA
129 AAAAGTAAAAA
*
24873647 AAGAAATAAAAAACATAAAACTAATAAAAATCAGATTAAATGTTAAAAATAAATAAATAAAAAAG
1 AAGAAATAAAAAACATAAAACGAATAAAAATCAGATTAAATGTTAAAAATAAATAAAT--AAAAG
*
24873712 TAAAATCTTAAAAGGAATATTTAATAAAACCCTTTTTATTTAAAATAAAACAAACAAATATATAT
64 TAAAATATTAAAAGGAATATTTAATAAAACCCTTTTTATTTAAAATAAAACAAACAAATATATAT
24873777 AAAAGTAAAAA
129 AAAAGTAAAAA
24873788 AAGAAATAAAAAACATAAAA
1 AAGAAATAAAAAACATAAAA
24873808 AAAGTCTAAG
Statistics
Matches: 155, Mismatches: 2, Indels: 6
0.95 0.01 0.04
Matches are distributed among these distances:
137 50 0.32
138 2 0.01
139 5 0.03
140 3 0.02
141 95 0.61
ACGTcount: A:0.64, C:0.06, G:0.05, T:0.24
Consensus pattern (139 bp):
AAGAAATAAAAAACATAAAACGAATAAAAATCAGATTAAATGTTAAAAATAAATAAATAAAAGTA
AAATATTAAAAGGAATATTTAATAAAACCCTTTTTATTTAAAATAAAACAAACAAATATATATAA
AAGTAAAAA
Found at i:24876358 original size:40 final size:41
Alignment explanation
Indices: 24876299--24876530 Score: 303
Period size: 40 Copynumber: 5.8 Consensus size: 41
24876289 CATTTGAATG
* * *
24876299 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
24876339 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
24876379 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
24876419 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
24876459 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
24876499 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
24876531 TTGTGGTTAT
Statistics
Matches: 168, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 161 0.96
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:24876513 original size:120 final size:120
Alignment explanation
Indices: 24876299--24876550 Score: 418
Period size: 120 Copynumber: 2.1 Consensus size: 120
24876289 CATTTGAATG
* * *
24876299 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
24876364 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
24876419 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
* *
24876483 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
65 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
24876539 ATATCC-GGCTAA
1 ATATCCGGGCTAA
24876551 ATTCCGAAGA
Statistics
Matches: 123, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
119 6 0.05
120 114 0.93
121 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:24876546 original size:80 final size:80
Alignment explanation
Indices: 24876299--24876530 Score: 340
Period size: 80 Copynumber: 2.9 Consensus size: 80
24876289 CATTTGAATG
* *
24876299 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
24876364 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* * *
24876379 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
24876444 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* * * * *
24876459 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGC
*
24876523 AATTGTGC
65 ATTTGTGC
24876531 TTGTGGTTAT
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
80 134 0.99
81 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:24877968 original size:14 final size:14
Alignment explanation
Indices: 24877949--24877999 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
24877939 TCCTTTGTCC
24877949 TTTTCTTTTTTGTT
1 TTTTCTTTTTTGTT
*
24877963 TTTTCTTTTCTGTT
1 TTTTCTTTTTTGTT
*
24877977 TGTTGCTTTCTTTTGTT
1 T-TTTC-TT-TTTTGTT
24877994 TTTTCT
1 TTTTCT
24878000 CTTGTTGCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 14 0.47
15 4 0.13
16 5 0.17
17 7 0.23
ACGTcount: A:0.00, C:0.12, G:0.10, T:0.78
Consensus pattern (14 bp):
TTTTCTTTTTTGTT
Found at i:24877972 original size:19 final size:20
Alignment explanation
Indices: 24877948--24877997 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
24877938 TTCCTTTGTC
*
24877948 CTTTTCTTTTTTGTT-TTTT
1 CTTTTCTTTTTTGTTGCTTT
*
24877967 CTTTTC-TGTTTGTTGCTTT
1 CTTTTCTTTTTTGTTGCTTT
*
24877986 CTTTTGTTTTTT
1 CTTTTCTTTTTT
24877998 CTCTTGTTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 7 0.28
19 14 0.56
20 4 0.16
ACGTcount: A:0.00, C:0.12, G:0.10, T:0.78
Consensus pattern (20 bp):
CTTTTCTTTTTTGTTGCTTT
Found at i:24879221 original size:41 final size:41
Alignment explanation
Indices: 24879170--24879253 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
24879160 TCACTAGCAC
* * *
24879170 AAAGCCTGCTAGGCTCAAGGCCCGATACAATACACCGGCAT
1 AAAGCCTGCTAGGCCCAAGGCCCAATACAATACACCGCCAT
24879211 AAAGCCTGCTAGGCCCAAGGCCCAATACAATACACCGCCAT
1 AAAGCCTGCTAGGCCCAAGGCCCAATACAATACACCGCCAT
24879252 AA
1 AA
24879254 CAACTCAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.33, G:0.19, T:0.13
Consensus pattern (41 bp):
AAAGCCTGCTAGGCCCAAGGCCCAATACAATACACCGCCAT
Found at i:24885518 original size:50 final size:51
Alignment explanation
Indices: 24885390--24885631 Score: 233
Period size: 50 Copynumber: 4.7 Consensus size: 51
24885380 GATAATAACA
* * ** * * *
24885390 TGCCAAAGCCATGTACCAGACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATACGG
* * * **
24885439 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATAT-CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATACGG
* *
24885489 TGCCCATGCCATGTCCCAGACATGGTCTTACA-GAGGACCTCTCAT-TTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGACCTCTCATATACGG
* * *
24885539 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATAATCTCAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--ACGG
*
24885595 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
24885632 TCGCTTTATC
Statistics
Matches: 158, Mismatches: 24, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
48 1 0.01
49 39 0.25
50 80 0.51
51 1 0.01
54 1 0.01
56 36 0.23
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATACGG
Found at i:24889792 original size:22 final size:21
Alignment explanation
Indices: 24889744--24889816 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 21
24889734 GTGCAAATAG
24889744 TGTTCACA-CTAACATAATCA
1 TGTTCACACCTAACATAATCA
*
24889764 TGTTCACACCTAACACTTAAT-T
1 TGTTCACACCTAACA--TAATCA
24889786 TGTTCACA-CTAAAGCATAAAT-A
1 TGTTCACACCT-AA-CAT-AATCA
24889808 TGTTCACAC
1 TGTTCACAC
24889817 ACACTTAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
20 8 0.18
21 9 0.20
22 21 0.48
23 6 0.14
ACGTcount: A:0.37, C:0.25, G:0.07, T:0.32
Consensus pattern (21 bp):
TGTTCACACCTAACATAATCA
Found at i:24895747 original size:18 final size:18
Alignment explanation
Indices: 24895724--24895758 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
24895714 GGGCGGACTC
24895724 CTTTGGAAATGATAGAAT
1 CTTTGGAAATGATAGAAT
24895742 CTTTGGAAATGATAGAA
1 CTTTGGAAATGATAGAA
24895759 ATGATAGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (18 bp):
CTTTGGAAATGATAGAAT
Found at i:24896782 original size:24 final size:24
Alignment explanation
Indices: 24896750--24896800 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
24896740 TTGGTTTATT
24896750 TTCAAGCCCTCCCTCCAGTAGTGG
1 TTCAAGCCCTCCCTCCAGTAGTGG
24896774 TTCAAGCCCTCCCTCCAGTAGTGG
1 TTCAAGCCCTCCCTCCAGTAGTGG
24896798 TTC
1 TTC
24896801 TAACCATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.16, C:0.37, G:0.20, T:0.27
Consensus pattern (24 bp):
TTCAAGCCCTCCCTCCAGTAGTGG
Found at i:24900540 original size:20 final size:19
Alignment explanation
Indices: 24900517--24900572 Score: 51
Period size: 20 Copynumber: 2.9 Consensus size: 19
24900507 TGACATTAGC
24900517 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24900536 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24900556 CACA-TCAAAATGATTTT
1 CA-AGTCAAAATGATTTT
24900573 CAAACATCCC
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24901337 original size:822 final size:820
Alignment explanation
Indices: 24899754--24901398 Score: 3211
Period size: 822 Copynumber: 2.0 Consensus size: 820
24899744 CTCTAGTTTT
*
24899754 ACATCCCCAATGATCATATTCACTACATCAACAACCTCAATGGCTGGAAATCTATTAAGGGGTAT
1 ACATCCCCAATGACCATATTCACTACATCAACAACCTCAATGGCTGGAAATCTATTAAGGGGTAT
24899819 AAATACCATCTTCCAAAGACTTTACTAAAATTATGGCCAATTTCTTAATATGAACTAAAATGACT
66 AAATACCATCTTCCAAAGACTTTACTAAAATTATGGCCAATTTCTTAATATGAACTAAAATGACT
24899884 CAATTAGTTGTCCATATGCTCGAAATTTGCATAGATTATAAGTAAAAAGGTGCTAAAAAACCTAT
131 CAATTAGTTGTCCATATGCTCGAAATTTGCATAGATTATAAGTAAAAAGGTGCTAAAAAACCTAT
24899949 ATAATTTAGACATATCACACCCTTAAACTTAATCCATTGCTCGTCCCGAGTAATGTTTTATGCAA
196 ATAATTTAGACATATCACACCCTTAAACTTAATCCATTGCTCGTCCCGAGTAATGTTTTATGCAA
24900014 AGCAAAAATTAGGGAAATCTTGCACAATATTTACAAAGAATCAACTTTTCACATAATCATACAAC
261 AGCAAAAATTAGGGAAATCTTGCACAATATTTACAAAGAATCAACTTTTCACATAATCATACAAC
24900079 AAGAAATTTATGCTCATAATCTCTTCTTGCTAATAAATTGCGCACATGCAGATGTTATTTGAAAA
326 AAGAAATTTATGCTCATAATCTCTTCTTGCTAATAAATTGCGCACATGCAGATGTTATTTGAAAA
24900144 CCTTATGTTAAGTAAAAGAAAATGCTATCATTTGTCATAATTTGCATGCATTACAAAGTCATTTA
391 CCTTATGTTAAGTAAAAGAAAATGCTATCATTTGTCATAATTTGCATGCATTACAAAGTCATTTA
24900209 TAAAAGTCACCATTCATCAAATTTTCCTTATCTAGTTAGACAAAACATTCCTAAGGTTTAATTAT
456 TAAAAGTCACCATTCATCAAATTTTCCTTATCTAGTTAGACAAAACATTCCTAAGGTTTAATTAT
24900274 TGTTCTTCATATGCTGCACTTAATAATTTCTCTCCACTAATGCAGTGGGCATAATTATCTGTTAA
521 TGTTCTTCATATGCTGCACTTAATAATTTCTCTCCACTAATGCAGTGGGCATAATTATCTGTTAA
*
24900339 ACTAGGCTTTATTTGATAAAAGATTTTGAGATAACAAATTGAAGTGGTTTTTAGTATAAGTTAAA
586 ACTAGGCTTTATTTGATAAAAGATTTTGAGATAACAAATTGAAGTGGTTTTTAATATAAGTTAAA
24900404 ATTGACAAAATGATTTTTAAATTTGAAGTCTAAGAAATAAAACTTTGAATATTTACATTAATCTT
651 ATTGACAAAATGATTTTTAAATTTGAAGTCTAAGAAATAAAACTTTGAATATTTACATTAATCTT
24900469 TTAGAAAAATTTTAAACAATTTTAAAATCAATTGAAAATGACATTAGCCAAGTCAAAATGATTTT
716 TTAGAAAAATTTTAAACAATTTTAAAATCAATTGAAAATGACATTAGCCAAGTCAAAATGATTTT
24900534 AATCAAGTTAAAACCATGTTAACACATCAAAATGATTTTCAA
781 AATCAAGTTAAAACCATGTTAACACATCAAAA-GA-TTTCAA
24900576 ACATCCCCAATGACCATATTCACTACATCAACAACCTCAATGGCTGGAAATCTATTAAGGGGTAT
1 ACATCCCCAATGACCATATTCACTACATCAACAACCTCAATGGCTGGAAATCTATTAAGGGGTAT
24900641 AAATACCATCTTCCAAAGACTTTACTAAAATTATGGCCAATTTCTTAATATGAACTAAAATGACT
66 AAATACCATCTTCCAAAGACTTTACTAAAATTATGGCCAATTTCTTAATATGAACTAAAATGACT
24900706 CAATTAGTTGTCCATATGCTCGAAATTTGCATAGATTATAAGTAAAAAGGTGCTAAAAAACCTAT
131 CAATTAGTTGTCCATATGCTCGAAATTTGCATAGATTATAAGTAAAAAGGTGCTAAAAAACCTAT
24900771 ATAATTTAGACATATCACACCCTTAAACTTAATCCATTGCTCGTCCCGAGTAATGTTTTATGCAA
196 ATAATTTAGACATATCACACCCTTAAACTTAATCCATTGCTCGTCCCGAGTAATGTTTTATGCAA
24900836 AGCAAAAATTAGGGAAATCTTGCACAATATTTACAAAGAATCAACTTTTCACATAATCATACAAC
261 AGCAAAAATTAGGGAAATCTTGCACAATATTTACAAAGAATCAACTTTTCACATAATCATACAAC
*
24900901 AAGAAATTTATGCTCATAATCTCTTCTTGCTAATAAATTGCTCACATGCAGATGTTATTTGAAAA
326 AAGAAATTTATGCTCATAATCTCTTCTTGCTAATAAATTGCGCACATGCAGATGTTATTTGAAAA
*
24900966 TCTTATGTTAAGTAAAAGAAAATGCTATCATTTGTCATAATTTGCATGCATTACAAAAGTCATTT
391 CCTTATGTTAAGTAAAAGAAAATGCTATCATTTGTCATAATTTGCATGCATTAC-AAAGTCATTT
24901031 ATAAAAGTCACCATTCATCAAA-TTTCCTTATCTAGTTAGACAAAACATTCCTAAGGTTTAATTA
455 ATAAAAGTCACCATTCATCAAATTTTCCTTATCTAGTTAGACAAAACATTCCTAAGGTTTAATTA
*
24901095 TTGTTCTTCATATGCTGCACTTAATAATTTCTCTCCACTAATGTAGTGGGCATAATTATCTGTTA
520 TTGTTCTTCATATGCTGCACTTAATAATTTCTCTCCACTAATGCAGTGGGCATAATTATCTGTTA
24901160 AACTAGGCTTTATTTGATAAAAGATTTTGAGATAACAAATTGAAGTGGTTTTTAATATAAGTTAA
585 AACTAGGCTTTATTTGATAAAAGATTTTGAGATAACAAATTGAAGTGGTTTTTAATATAAGTTAA
24901225 AATTGACAAAATGATTTTTAAATTTGAAGTCTAAGAAATAAAACTTTGAATATTTACATTAATCT
650 AATTGACAAAATGATTTTTAAATTTGAAGTCTAAGAAATAAAACTTTGAATATTTACATTAATCT
24901290 TTTAGAAAAATTTTAAACAATTTTAAAATCAATTGAAAATGACATTAGCCAAGTCAAAATGATTT
715 TTTAGAAAAATTTTAAACAATTTTAAAATCAATTGAAAATGACATTAGCCAAGTCAAAATGATTT
24901355 TAATCAAGTTAAAACCATGTTAACACATCAAAAGATTTCAA
780 TAATCAAGTTAAAACCATGTTAACACATCAAAAGATTTCAA
24901396 ACA
1 ACA
24901399 AGTCAGAATT
Statistics
Matches: 817, Mismatches: 5, Indels: 4
0.99 0.01 0.00
Matches are distributed among these distances:
820 9 0.01
821 2 0.00
822 774 0.95
823 32 0.04
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (820 bp):
ACATCCCCAATGACCATATTCACTACATCAACAACCTCAATGGCTGGAAATCTATTAAGGGGTAT
AAATACCATCTTCCAAAGACTTTACTAAAATTATGGCCAATTTCTTAATATGAACTAAAATGACT
CAATTAGTTGTCCATATGCTCGAAATTTGCATAGATTATAAGTAAAAAGGTGCTAAAAAACCTAT
ATAATTTAGACATATCACACCCTTAAACTTAATCCATTGCTCGTCCCGAGTAATGTTTTATGCAA
AGCAAAAATTAGGGAAATCTTGCACAATATTTACAAAGAATCAACTTTTCACATAATCATACAAC
AAGAAATTTATGCTCATAATCTCTTCTTGCTAATAAATTGCGCACATGCAGATGTTATTTGAAAA
CCTTATGTTAAGTAAAAGAAAATGCTATCATTTGTCATAATTTGCATGCATTACAAAGTCATTTA
TAAAAGTCACCATTCATCAAATTTTCCTTATCTAGTTAGACAAAACATTCCTAAGGTTTAATTAT
TGTTCTTCATATGCTGCACTTAATAATTTCTCTCCACTAATGCAGTGGGCATAATTATCTGTTAA
ACTAGGCTTTATTTGATAAAAGATTTTGAGATAACAAATTGAAGTGGTTTTTAATATAAGTTAAA
ATTGACAAAATGATTTTTAAATTTGAAGTCTAAGAAATAAAACTTTGAATATTTACATTAATCTT
TTAGAAAAATTTTAAACAATTTTAAAATCAATTGAAAATGACATTAGCCAAGTCAAAATGATTTT
AATCAAGTTAAAACCATGTTAACACATCAAAAGATTTCAA
Found at i:24902569 original size:20 final size:19
Alignment explanation
Indices: 24902546--24902612 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24902536 TGACATTAGC
24902546 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24902565 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24902585 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
24902606 CAAGTCA
1 CAAGTCA
24902613 GAATTTCTCC
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 11 0.31
20 17 0.49
21 7 0.20
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24903784 original size:20 final size:19
Alignment explanation
Indices: 24903761--24903827 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24903751 TGACATTAGC
24903761 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24903780 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24903800 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
24903821 CAAGTCA
1 CAAGTCA
24903828 GAATTTCTCC
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 11 0.31
20 17 0.49
21 7 0.20
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24904999 original size:20 final size:19
Alignment explanation
Indices: 24904976--24905042 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24904966 TGACATTAGC
24904976 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24904995 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24905015 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
24905036 CAAGTCA
1 CAAGTCA
24905043 GAATTTCTCC
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 11 0.31
20 17 0.49
21 7 0.20
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24906213 original size:20 final size:19
Alignment explanation
Indices: 24906190--24906256 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24906180 TGACATTAGC
24906190 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24906209 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24906229 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
24906250 CAAGTCA
1 CAAGTCA
24906257 GAATTTCTCC
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 11 0.31
20 17 0.49
21 7 0.20
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24907428 original size:20 final size:19
Alignment explanation
Indices: 24907405--24907471 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24907395 TGACATTAGC
24907405 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24907424 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24907444 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
24907465 CAAGTCA
1 CAAGTCA
24907472 GAATTCTCCA
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 11 0.31
20 17 0.49
21 7 0.20
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24908641 original size:20 final size:19
Alignment explanation
Indices: 24908618--24908684 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24908608 TGACATTAGC
24908618 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24908637 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24908657 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
24908678 CAAGTCA
1 CAAGTCA
24908685 GAATTTCTCC
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 11 0.31
20 17 0.49
21 7 0.20
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24909854 original size:20 final size:19
Alignment explanation
Indices: 24909831--24909897 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24909821 TGACATTAGC
24909831 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24909850 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24909870 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
24909891 CAAGTCA
1 CAAGTCA
24909898 GAATTCTCCA
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 11 0.31
20 17 0.49
21 7 0.20
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24911066 original size:20 final size:19
Alignment explanation
Indices: 24911043--24911108 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 19
24911033 GACATTAGCT
24911043 AAGTCAAAATGATTTTAATC
1 AAGTCAAAATGATTTTAA-C
* ** *
24911063 AAGTTAAAACCATGTTAAC
1 AAGTCAAAATGATTTTAAC
24911082 ACA-TCAAAATGATTTTCAAAC
1 A-AGTCAAAATGATTTT--AAC
24911103 AAGTCA
1 AAGTCA
24911109 GAATTGCTCC
Statistics
Matches: 34, Mismatches: 8, Indels: 7
0.69 0.16 0.14
Matches are distributed among these distances:
19 11 0.32
20 16 0.47
21 7 0.21
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.29
Consensus pattern (19 bp):
AAGTCAAAATGATTTTAAC
Found at i:24912279 original size:20 final size:19
Alignment explanation
Indices: 24912256--24912322 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 19
24912246 TGACATTAGC
24912256 CAAGTCAAAATGATTTTAA
1 CAAGTCAAAATGATTTTAA
* ** *
24912275 TCAAGTTAAAACCATGTTAA
1 -CAAGTCAAAATGATTTTAA
24912295 CACA-TCAAAATGATTTTCAAA
1 CA-AGTCAAAATGATTTT--AA
24912316 CAAGTCA
1 CAAGTCA
24912323 GAATTGCTCC
Statistics
Matches: 35, Mismatches: 8, Indels: 7
0.70 0.16 0.14
Matches are distributed among these distances:
19 11 0.31
20 17 0.49
21 7 0.20
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.28
Consensus pattern (19 bp):
CAAGTCAAAATGATTTTAA
Found at i:24917598 original size:49 final size:49
Alignment explanation
Indices: 24917377--24917804 Score: 696
Period size: 47 Copynumber: 8.9 Consensus size: 49
24917367 GCCCTTCGGA
* * * * *
24917377 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24917424 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24917471 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24917518 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24917565 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24917614 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24917661 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24917710 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTAGTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24917759 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
24917805 CGCCATACTA
Statistics
Matches: 361, Mismatches: 14, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 184 0.51
49 176 0.49
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24917606 original size:96 final size:96
Alignment explanation
Indices: 24917377--24917804 Score: 720
Period size: 96 Copynumber: 4.5 Consensus size: 96
24917367 GCCCTTCGGA
* * * * * * *
24917377 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
24917440 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
24917471 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
24917534 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
24917565 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
24917630 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
24917661 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
24917726 ACACTTTCACATTCATCACATCGGCTAGTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
24917759 CTTATCACATATATATACACTTTCACATTCATCACATCAGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
24917805 CGCCATACTA
Statistics
Matches: 318, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
93 1 0.00
94 92 0.29
96 143 0.45
98 82 0.26
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24920591 original size:10 final size:10
Alignment explanation
Indices: 24920578--24920607 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
24920568 AAGTTCAAAA
24920578 AAAACTAAAG
1 AAAACTAAAG
24920588 AAAACCTAAAG
1 AAAA-CTAAAG
24920599 AAAACTAAA
1 AAAACTAAA
24920608 CCTAAAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.13, G:0.07, T:0.10
Consensus pattern (10 bp):
AAAACTAAAG
Found at i:24922666 original size:18 final size:18
Alignment explanation
Indices: 24922635--24922671 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
24922625 TAAAAATGAA
*
24922635 ATAAACACACAAATAAAC
1 ATAAAAACACAAATAAAC
*
24922653 ATAAAAACATAAATAAAC
1 ATAAAAACACAAATAAAC
24922671 A
1 A
24922672 CACATAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.70, C:0.16, G:0.00, T:0.14
Consensus pattern (18 bp):
ATAAAAACACAAATAAAC
Found at i:24928138 original size:204 final size:204
Alignment explanation
Indices: 24927788--24928196 Score: 755
Period size: 204 Copynumber: 2.0 Consensus size: 204
24927778 CTAAACCTAA
*
24927788 AACTAAGCTAGAATGTGTCTCTCTTCTACTCGACAATTTTTGGTTATTTTAAAGGGTGTTCTAAT
1 AACTAAGCTAGAATGTGTCTCTCTTCTACTCGACAATTTTTGGTTATTTTAAAAGGTGTTCTAAT
*
24927853 AACTTTTTTATGCCAAAATTTCCCCTACATGGGCCTTGTGTGATTGGTGGGTCGAGTAGATAGAC
66 AACTTTTTGATGCCAAAATTTCCCCTACATGGGCCTTGTGTGATTGGTGGGTCGAGTAGATAGAC
*
24927918 AAAGTTTGCCCTTTTTGTCCATGTTTTTCCATTTGATGAAGGTGATATCGCAATGCCCTGAAGAG
131 AAAGTTTGCCCTTTTTGTCCATGTTTTTCCATTTGATGAAGGCGATATCGCAATGCCCTGAAGAG
24927983 GATATTGCG
196 GATATTGCG
*
24927992 AACTAAGCTAGAATGTGTCTCTCTTCTACTCGGCAATTTTTGGTTATTTTAAAAGGTGTTCTAAT
1 AACTAAGCTAGAATGTGTCTCTCTTCTACTCGACAATTTTTGGTTATTTTAAAAGGTGTTCTAAT
* *
24928057 GACTTTTTGATGCCAAAATTTCCCCTACATGGGCCTTGTGTGATTGGTGGGTCGGGTAGATAGAC
66 AACTTTTTGATGCCAAAATTTCCCCTACATGGGCCTTGTGTGATTGGTGGGTCGAGTAGATAGAC
*
24928122 AAAGTTTGCCCTTTTTGTCCATGTTTTTCCATTTGATGAAGGCGATATCGCGATGCCCTGAAGAG
131 AAAGTTTGCCCTTTTTGTCCATGTTTTTCCATTTGATGAAGGCGATATCGCAATGCCCTGAAGAG
24928187 GATATTGCG
196 GATATTGCG
24928196 A
1 A
24928197 TATCTTAAGA
Statistics
Matches: 198, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
204 198 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.37
Consensus pattern (204 bp):
AACTAAGCTAGAATGTGTCTCTCTTCTACTCGACAATTTTTGGTTATTTTAAAAGGTGTTCTAAT
AACTTTTTGATGCCAAAATTTCCCCTACATGGGCCTTGTGTGATTGGTGGGTCGAGTAGATAGAC
AAAGTTTGCCCTTTTTGTCCATGTTTTTCCATTTGATGAAGGCGATATCGCAATGCCCTGAAGAG
GATATTGCG
Found at i:24932528 original size:23 final size:23
Alignment explanation
Indices: 24932497--24932547 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
24932487 ACCTACTTTC
* *
24932497 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
24932520 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
24932543 TTACA
1 TTACA
24932548 TTTCTCTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:24935700 original size:51 final size:50
Alignment explanation
Indices: 24935575--24935816 Score: 231
Period size: 51 Copynumber: 4.8 Consensus size: 50
24935565 TATCATTCGA
* * * *
24935575 TACACGTAGTAGCCTTCACATAGTACTCCACACGTGATCA-AACTTTCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCATAA-TATCCGG
* * * *
24935625 TTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCATTAATATCTGA
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCA-TAATATCCGG
* * *
24935676 TACCCGTAGTAGCCTACACATAGTACTACACACGTGATCGA-AGCTATCCGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGA-CCATA-ATATCCGG
** * * * * * * *
24935727 TATGCATAGTAGCCTGCACATAGTACTACACATGCGACCTTTCAT-TCTGG
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACC-ATAATATCCGG
24935777 TACACGTAGTAGCCTACACATAGTACTACACAC-TGACCAT
1 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCAT
24935817 CACTTTCACT
Statistics
Matches: 154, Mismatches: 32, Indels: 14
0.77 0.16 0.07
Matches are distributed among these distances:
48 1 0.01
49 4 0.03
50 70 0.45
51 75 0.49
52 4 0.03
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
TACACGTAGTAGCCTACACATAGTACTACACACGTGACCATAATATCCGG
Found at i:24935713 original size:101 final size:101
Alignment explanation
Indices: 24935569--24935809 Score: 337
Period size: 101 Copynumber: 2.4 Consensus size: 101
24935559 AACTATTATC
* * *
24935569 ATTC-GATACACGTAGTAGCCTTCACATAGTACTCCACACGTGATC-AAACTTTCCGGT-T-CAC
1 ATTCTGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTATGCA-
*
24935630 GTAGTAGCCTGCACATAGTACTACACACGTGACCATTA
65 -TAGTAGCCTGCACATAGTACTACACACGCGACCATTA
* *
24935668 ATATCTGATACCCGTAGTAGCCTACACATAGTACTACACACGTGATCGAAGCTATCCGGTATGCA
1 AT-TCTGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTATGCA
* * *
24935733 TAGTAGCCTGCACATAGTACTACACATGCGACCTTTC
65 TAGTAGCCTGCACATAGTACTACACACGCGACCATTA
*
24935770 ATTCTGGTACACGTAGTAGCCTACACATAGTACTACACAC
1 ATTCTGATACACGTAGTAGCCTACACATAGTACTACACAC
24935810 TGACCATCAC
Statistics
Matches: 126, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
99 2 0.02
100 2 0.02
101 74 0.59
102 45 0.36
103 1 0.01
104 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (101 bp):
ATTCTGATACACGTAGTAGCCTACACATAGTACTACACACGTGATCGAAACTATCCGGTATGCAT
AGTAGCCTGCACATAGTACTACACACGCGACCATTA
Found at i:24936063 original size:39 final size:39
Alignment explanation
Indices: 24936009--24936092 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
24935999 TATTTAACTT
* *
24936009 ATTTTACACTCACATTATTCAATCCAGTCCAGAAATCAC
1 ATTTTGCACTCACATTATTCAATCCAGTCCAAAAATCAC
24936048 ATTTTGCACTCACATTATTCAATCCAGTCCAAAAATCAC
1 ATTTTGCACTCACATTATTCAATCCAGTCCAAAAATCAC
24936087 ATTTTG
1 ATTTTG
24936093 GCAAAATTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.35, C:0.26, G:0.06, T:0.33
Consensus pattern (39 bp):
ATTTTGCACTCACATTATTCAATCCAGTCCAAAAATCAC
Found at i:24936662 original size:9 final size:9
Alignment explanation
Indices: 24936648--24936674 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
24936638 TTAAAAATAT
24936648 CCTATTTCA
1 CCTATTTCA
24936657 CCTATTTCA
1 CCTATTTCA
24936666 CCTATTTCA
1 CCTATTTCA
24936675 TGTCCATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.44
Consensus pattern (9 bp):
CCTATTTCA
Found at i:24937378 original size:50 final size:50
Alignment explanation
Indices: 24937303--24937632 Score: 388
Period size: 50 Copynumber: 6.6 Consensus size: 50
24937293 TTTCCTATAC
* * ** *
24937303 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * **
24937353 TGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCA--TC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
24937399 --CCAGTG--TTGTCTCAGACATGGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
24937445 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
24937495 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
24937545 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GG
*
24937601 TGCCAATGCCATGTCCTAGACATGGTCTTACA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA
24937633 CTGGCTCACA
Statistics
Matches: 240, Mismatches: 26, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
42 29 0.12
44 6 0.03
48 6 0.03
50 161 0.67
53 5 0.02
56 33 0.14
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:24937522 original size:142 final size:145
Alignment explanation
Indices: 24937267--24937632 Score: 398
Period size: 142 Copynumber: 2.5 Consensus size: 145
24937257 CAAAGCCATA
* ** * * * * * * *
24937267 TCTCAGACATGGTCTTACATGAGATGTTTCCTAT-ACTGCCAATGCCATATCCCAGATATGGTCT
1 TCTCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAATGCCATGTCCTAGACATGGTCT
** * * *
24937331 TACATGGGAGTTCTCATATCGGTGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTC
66 TACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTC
* *
24937396 A-TC-CCAGTG-TTG
131 ACTCGCCAATGCATG
*
24937408 TCTCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCTAGACATGGTCT
1 TCTCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAATGCCATGTCCTAGACATGGTCT
* * * *
24937473 TACATGGGACCTCTTATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC
66 TACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTC
24937538 ATCTCGGTGCCAATGCCATG
131 A-CTC---GCCAATG-CATG
*
24937558 TCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGGTGCCAATGCCATGTCCTAGACA
1 TCTCAGACATGGTCTTACATGGGACCTCTC---ATCTC-A--GTGCCAATGCCATGTCCTAGACA
24937623 TGGTCTTACA
60 TGGTCTTACA
24937633 CTGGCTCACA
Statistics
Matches: 186, Mismatches: 24, Indels: 15
0.83 0.11 0.07
Matches are distributed among these distances:
141 28 0.15
142 82 0.44
144 2 0.01
148 5 0.03
150 31 0.17
153 5 0.03
154 1 0.01
156 32 0.17
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (145 bp):
TCTCAGACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAATGCCATGTCCTAGACATGGTCT
TACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAAACATGGTCTTACAGGGGACCTCTC
ACTCGCCAATGCATG
Found at i:24940565 original size:29 final size:31
Alignment explanation
Indices: 24940503--24940569 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 31
24940493 ACCCTTAAAA
* * **
24940503 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTGATCCCTCAAATTTTGAG
24940534 TATTTACACT-TT-ATCCCTCAAATTTTGAG
1 TATTTACACTATTGATCCCTCAAATTTTGAG
24940563 TATTTAC
1 TATTTAC
24940570 TATTGGGCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 20 0.62
30 2 0.06
31 10 0.31
ACGTcount: A:0.25, C:0.18, G:0.07, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTGATCCCTCAAATTTTGAG
Found at i:24940749 original size:23 final size:23
Alignment explanation
Indices: 24940718--24940770 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
24940708 ACCTACTTTC
* *
24940718 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
24940741 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
24940764 TTACAGT
1 TTACAGT
24940771 CGATCCCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:24942861 original size:20 final size:20
Alignment explanation
Indices: 24942836--24942879 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
24942826 AAATCTGAAA
24942836 TTTTAA-AGGAATTTATTTAT
1 TTTTAACAGGAATTT-TTTAT
**
24942856 TTTTAACATTAATTTTTTAT
1 TTTTAACAGGAATTTTTTAT
24942876 TTTT
1 TTTT
24942880 TTGAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 15 0.71
21 6 0.29
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (20 bp):
TTTTAACAGGAATTTTTTAT
Found at i:24946304 original size:120 final size:118
Alignment explanation
Indices: 24946050--24946337 Score: 310
Period size: 120 Copynumber: 2.4 Consensus size: 118
24946040 CTGCTCAAAT
* *
24946050 ATAGTAGTAATCCATAACTTCTAAGTCCAAAACAAATATCTTATTCACAGAGTTGCAAATTCATC
1 ATAGTAGTAATCCATAACTTCTTAGTCCAAAAC-AATATCTTATTTACAGAGTTGCAAATTCATC
* * * * * * * * *
24946115 ATCGAATTGGTATATACTGCACATGTGAGTAGATATACCTGCTCCAAATATGGG
65 ATCGAATTGATAAAAACTGAACATGTAAGAACATACACCTGCTCCAAATATAGG
* * * * * *
24946169 ACAGTAGTAATCCATAATTTCTTGGTCCAAGAACAATTTCTTATTTACGGA-TTCGCAGATTCAT
1 ATAGTAGTAATCCATAACTTCTTAGTCCAA-AACAATATCTTATTTACAGAGTT-GCAAATTCAT
* *
24946233 CATCGAATTGATAAAAAACTGAACATGTAAGAACATACACCTGCTCGAGATATAAGG
64 CATCGAATTGAT-AAAAACTGAACATGTAAGAACATACACCTGCTCCAAATAT-AGG
* * *
24946290 -TAGTAGTAATCCATAAGTTCTTAGTCCTAAAACGATGTCTTATTTACA
1 ATAGTAGTAATCCATAACTTCTTAGTCC-AAAACAATATCTTATTTACA
24946338 TATATCGTCT
Statistics
Matches: 139, Mismatches: 25, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
118 2 0.01
119 60 0.43
120 73 0.53
121 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (118 bp):
ATAGTAGTAATCCATAACTTCTTAGTCCAAAACAATATCTTATTTACAGAGTTGCAAATTCATCA
TCGAATTGATAAAAACTGAACATGTAAGAACATACACCTGCTCCAAATATAGG
Found at i:24948076 original size:19 final size:19
Alignment explanation
Indices: 24948052--24948088 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
24948042 CTCTTCATCA
24948052 CTGGTTCTTTGTTCCTCTG
1 CTGGTTCTTTGTTCCTCTG
24948071 CTGGTTCTTTGTTCCTCT
1 CTGGTTCTTTGTTCCTCT
24948089 TCTCCACTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.00, C:0.27, G:0.19, T:0.54
Consensus pattern (19 bp):
CTGGTTCTTTGTTCCTCTG
Found at i:24948487 original size:14 final size:14
Alignment explanation
Indices: 24948449--24948481 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
24948439 GCCAAACAAT
*
24948449 TTCTGGCATTTTAG
1 TTCTAGCATTTTAG
24948463 TTCTAGCATTTTAG
1 TTCTAGCATTTTAG
24948477 TTCTA
1 TTCTA
24948482 CAATTTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.52
Consensus pattern (14 bp):
TTCTAGCATTTTAG
Found at i:24950625 original size:13 final size:13
Alignment explanation
Indices: 24950584--24950648 Score: 78
Period size: 13 Copynumber: 4.9 Consensus size: 13
24950574 ACACTCAAAT
24950584 TTTTCAAAAAGCA-
1 TTTTC-AAAAGCAC
*
24950597 TTTCTCAAAAGTAC
1 TTT-TCAAAAGCAC
* *
24950611 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
24950624 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
24950637 TTTTCAAAAGCA
1 TTTTCAAAAGCA
24950649 ATAAAGAACT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
13 39 0.89
14 5 0.11
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:24957989 original size:33 final size:33
Alignment explanation
Indices: 24957944--24958046 Score: 100
Period size: 33 Copynumber: 3.1 Consensus size: 33
24957934 AACGGTATAC
* *
24957944 CTCTGTTCTGTGTTTATTGTCCCT-GTAGACTAT
1 CTCTGTTTTGTGTTTACTGT-CCTAGTAGACTAT
* * * *
24957977 GTTTGTTTTGTGTTCACTGTCCTAGTGGACTAT
1 CTCTGTTTTGTGTTTACTGTCCTAGTAGACTAT
** * *
24958010 CTCTGTTTTGTGTTTACCATCCCAGTGGACTAT
1 CTCTGTTTTGTGTTTACTGTCCTAGTAGACTAT
24958043 CTCT
1 CTCT
24958047 ATGGATGTTA
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
32 3 0.05
33 54 0.95
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.47
Consensus pattern (33 bp):
CTCTGTTTTGTGTTTACTGTCCTAGTAGACTAT
Found at i:24958734 original size:56 final size:56
Alignment explanation
Indices: 24958648--24958823 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
24958638 ACAAGGGATG
* *
24958648 ATGGGCAAAATATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
24958704 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
24958760 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
24958816 ATGAGCAA
1 ATGGGCAA
24958824 TAAACTAATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:24960183 original size:40 final size:40
Alignment explanation
Indices: 24959951--24960176 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
24959941 TCGAATGATG
* * * *
24959951 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
24959991 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24960031 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24960070 TTCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24960111 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24960152 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24960177 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 24 0.15
40 104 0.63
41 37 0.22
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24966698 original size:56 final size:56
Alignment explanation
Indices: 24966633--24966808 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
24966623 GACAAGGATG
*
24966633 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
24966689 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
24966745 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
24966801 ATGGGCAA
1 ATGGGCAA
24966809 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:24968072 original size:78 final size:79
Alignment explanation
Indices: 24967937--24968159 Score: 274
Period size: 78 Copynumber: 2.8 Consensus size: 79
24967927 TCGAATGATG
* * * * * *
24967937 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCGAAGGCATT
24968001 TGTGCGAGATACT-AA
64 TGTGCGAGATACTAAA
* *
24968016 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGCTAAGT-CCGAAGGCATT
*
24968079 TGTGCGAGTTACTAAA
64 TGTGCGAGATACTAAA
* * *
24968095 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTG
24968160 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 14, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
77 2 0.02
78 46 0.37
79 40 0.32
80 34 0.27
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:24968084 original size:40 final size:40
Alignment explanation
Indices: 24967937--24968159 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
24967927 TCGAATGATG
* * * *
24967937 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
24967977 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24968016 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24968055 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24968095 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
24968136 -CCGGGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24968160 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 22 0.14
39 34 0.21
40 96 0.59
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24968181 original size:118 final size:118
Alignment explanation
Indices: 24967937--24968192 Score: 286
Period size: 118 Copynumber: 2.2 Consensus size: 118
24967927 TCGAATGATG
* *
24967937 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
** **
24968002 GTGCGAGATACTAATTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
24968055 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
24968118 TTGTGCGAGTTACTATAACCGGGCTATGTCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTA-AACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
24968174 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
24968193 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
117 1 0.01
118 76 0.66
119 39 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (118 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:24968189 original size:39 final size:40
Alignment explanation
Indices: 24967937--24968192 Score: 222
Period size: 40 Copynumber: 6.5 Consensus size: 40
24967927 TCGAATGATG
* * * * * *
24967937 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
24967977 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
24968016 TTCGGGCT-AAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24968055 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24968095 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTA-AA
* ** ** *
24968136 -CCGGGCTATGT-CCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTA-CTAAA
*
24968174 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
24968193 TACGTGATTT
Statistics
Matches: 182, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
37 1 0.01
38 31 0.17
39 44 0.24
40 96 0.53
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24970303 original size:13 final size:14
Alignment explanation
Indices: 24970260--24970302 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
24970250 AAATGGAAAG
*
24970260 TTAGAAAAAAGATT
1 TTAGAAAAAGGATT
24970274 TTAGAAAAAGGATT
1 TTAGAAAAAGGATT
24970288 TTAGAAAAAGGATT
1 TTAGAAAAAGGATT
24970302 T
1 T
24970303 ATATTCTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (14 bp):
TTAGAAAAAGGATT
Found at i:24970603 original size:135 final size:136
Alignment explanation
Indices: 24970301--24970716 Score: 631
Period size: 135 Copynumber: 3.0 Consensus size: 136
24970291 GAAAAAGGAT
*
24970301 TTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGA-TCGAAATTAATTAAT
1 TTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACT-GAAATTAATTAAT
* * *
24970365 AAAACTGTTTATATTAAAAAATTCGGTAAAATATATACAATTAATATTTTGTATGAA-CAAATTC
65 ATAACTGTTTATATTAATAAATTC-AT-AAATATATACAATTAATATTTTGTATGAATCAAATTC
24970429 ATATATTAA
128 ATATATTAA
*
24970438 TTATATTATTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATA
1 TTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATA
* * * * *
24970503 TAATTGTTTGTATTAATAAATTCATTAATATATATAATTAATATTTTGTATGAATC-AATTCATG
66 TAACTGTTTATATTAATAAATTCATAAATATATACAATTAATATTTTGTATGAATCAAATTCATA
24970567 TATTAA
131 TATTAA
* * *
24970573 TTCTATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACAGGAATTAATTAATA
1 TTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATA
* *
24970638 TAACTATTTATATTAATAAATTTAGTAAATTATATACAATTAATATTTTGTATGAATCAAATTCA
66 TAACTGTTTATATTAATAAATTCA-TAAA-TATATACAATTAATATTTTGTATGAATCAAATTCA
24970703 TATATTAA
129 TATATTAA
24970711 TTATAT
1 TTATAT
24970717 CTATGTTCTT
Statistics
Matches: 252, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
135 121 0.48
136 5 0.02
137 107 0.42
138 19 0.08
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (136 bp):
TTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTAATA
TAACTGTTTATATTAATAAATTCATAAATATATACAATTAATATTTTGTATGAATCAAATTCATA
TATTAA
Found at i:24987784 original size:19 final size:20
Alignment explanation
Indices: 24987741--24987785 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
24987731 AACTATTTTA
24987741 AAAAATTTTGAAAATTATTT
1 AAAAATTTTGAAAATTATTT
*
24987761 TAAAATTTT-AAAATT-TATT
1 AAAAATTTTGAAAATTAT-TT
24987780 AAAAAT
1 AAAAAT
24987786 ATAATTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 1 0.05
19 13 0.59
20 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
AAAAATTTTGAAAATTATTT
Found at i:24992310 original size:12 final size:12
Alignment explanation
Indices: 24992293--24992317 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24992283 CATAAGTTTT
24992293 TAAATTTAAATA
1 TAAATTTAAATA
24992305 TAAATTTAAATA
1 TAAATTTAAATA
24992317 T
1 T
24992318 TCTCTTGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAAATTTAAATA
Found at i:24993304 original size:89 final size:88
Alignment explanation
Indices: 24993102--24993295 Score: 293
Period size: 89 Copynumber: 2.2 Consensus size: 88
24993092 AATTTTTAAT
* *
24993102 AAAAGCAGGGACTTAATTGCTTTTTTTGAAAAAGTTTGAGGGTCTTTTCGATGCATTTTGAAAGT
1 AAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTCGATGCATTTTGAAAGT
24993167 TCAAGTACCAAATTGAGTGAAAA
66 TCAAGTACCAAATTGAGTGAAAA
* * *
24993190 AAAAGGTAGGGGCTTAATTGCTTTTTTTGAAAAGGTTTGAGGGCCTTTTTGATGCATTTTGAAAG
1 AAAA-GCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTCGATGCATTTTGAAAG
24993255 TTCAAGTACCCAAA-TGAGTGTTAAAA
65 TTCAAGTA-CCAAATTGAGTG--AAAA
24993281 AAAA-CAGGGGCTTAA
1 AAAAGCAGGGGCTTAA
24993296 ATTTTTTTTA
Statistics
Matches: 96, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
88 4 0.04
89 79 0.82
90 5 0.05
91 8 0.08
ACGTcount: A:0.34, C:0.10, G:0.23, T:0.33
Consensus pattern (88 bp):
AAAAGCAGGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCCTTTTCGATGCATTTTGAAAGT
TCAAGTACCAAATTGAGTGAAAA
Found at i:24993790 original size:33 final size:33
Alignment explanation
Indices: 24993747--24993812 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
24993737 AGTCTCATTT
* * *
24993747 CCCTTGTTTTCTTAAGCAATGTGAGATATGAGA
1 CCCTTATTTTCTTAAACAATGGGAGATATGAGA
*
24993780 CCCTTATTTTCTTAAACAATGGGGGATATGAGA
1 CCCTTATTTTCTTAAACAATGGGAGATATGAGA
24993813 TATGTGTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (33 bp):
CCCTTATTTTCTTAAACAATGGGAGATATGAGA
Found at i:24995594 original size:51 final size:50
Alignment explanation
Indices: 24995431--24995655 Score: 173
Period size: 51 Copynumber: 4.4 Consensus size: 50
24995421 TTCGGTGGTT
* * * * * *
24995431 TGCACATAGTACCACCCATGTGACCATTGTCATCCAATACACATAGTAGCC
1 TGCACATAGTACTACACACGTGACCA-AGCCATCCAGTACACATAGTAGCC
* * * * ** * * *
24995482 TACATATAGTACTACGCACGTGATCAAGCTTTCCAGTTCACGTAATAGCC
1 TGCACATAGTACTACACACGTGACCAAGCCATCCAGTACACATAGTAGCC
* **
24995532 TGCACATAGTACTACACACGTGACCGAGGCCATCTGGTACACATAGTAGCC
1 TGCACATAGTACTACACACGTGACC-AAGCCATCCAGTACACATAGTAGCC
* * * * * *
24995583 TGCACATAGTACTACACATGTGACCATTATCTAACGA-TACACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCA--AGCCATCCAGTACACATAGTAGCC
* *
24995634 TGCTCTTAGTACTACACACGTG
1 TGCACATAGTACTACACACGTG
24995656 TTCATAGGTA
Statistics
Matches: 134, Mismatches: 37, Indels: 6
0.76 0.21 0.03
Matches are distributed among these distances:
50 38 0.28
51 93 0.69
52 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (50 bp):
TGCACATAGTACTACACACGTGACCAAGCCATCCAGTACACATAGTAGCC
Found at i:25003152 original size:51 final size:51
Alignment explanation
Indices: 25003090--25003314 Score: 222
Period size: 51 Copynumber: 4.4 Consensus size: 51
25003080 TTCGGTGGTT
* * * *
25003090 TGCACATAGTACCACCCATGTGACCATTGTCATCCGATACACGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCAATGTCATCCGATACACGTAGTAGCC
* * * * * * *
25003141 TACACATAGTACTACACACGTGATCAAGGT--TTCTAGTTCACGGAGTAGCC
1 TGCACATAGTACTACACACGTGACCAATGTCATCCGA-TACACGTAGTAGCC
* * * * *
25003191 TGCACATAGTACTACACACGTGACCAAAGCCATCTGGTACACATAGTAGCC
1 TGCACATAGTACTACACACGTGACCAATGTCATCCGATACACGTAGTAGCC
* * * *
25003242 TGCACATAGTACTACACATGTGACCATTATCTAT-CGATACGCGTAGTAGCC
1 TGCACATAGTACTACACACGTGACCAATGTC-ATCCGATACACGTAGTAGCC
*
25003293 TGCACTTAGTACTACACACGTG
1 TGCACATAGTACTACACACGTG
25003315 TTCATAGGTA
Statistics
Matches: 137, Mismatches: 33, Indels: 8
0.77 0.19 0.04
Matches are distributed among these distances:
49 3 0.02
50 38 0.28
51 93 0.68
52 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (51 bp):
TGCACATAGTACTACACACGTGACCAATGTCATCCGATACACGTAGTAGCC
Found at i:25008638 original size:12 final size:12
Alignment explanation
Indices: 25008621--25008645 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25008611 TTAGAAAAAA
25008621 CTCTTCCTCCTT
1 CTCTTCCTCCTT
25008633 CTCTTCCTCCTT
1 CTCTTCCTCCTT
25008645 C
1 C
25008646 CATGTTGGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (12 bp):
CTCTTCCTCCTT
Found at i:25008822 original size:8 final size:8
Alignment explanation
Indices: 25008811--25008855 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
25008801 CTCTCTCTAT
*
25008811 TTTTTTTC
1 TTTTTTTG
25008819 TTTTTTTG
1 TTTTTTTG
25008827 TTTTTTTG
1 TTTTTTTG
*
25008835 TTTTGTTG
1 TTTTTTTG
*
25008843 TTTTGTTG
1 TTTTTTTG
25008851 TTTTT
1 TTTTT
25008856 CTATTTTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.84
Consensus pattern (8 bp):
TTTTTTTG
Found at i:25017819 original size:27 final size:27
Alignment explanation
Indices: 25017782--25017907 Score: 112
Period size: 27 Copynumber: 4.7 Consensus size: 27
25017772 AACATGTCAA
*
25017782 AAAAGAATAGCCTTTATGACGTATTGC
1 AAAAGAATAGCCTTTATGACGTATTAC
* *
25017809 AAAAGAATAGCCTTTGTGATGTATTAC
1 AAAAGAATAGCCTTTATGACGTATTAC
* ** *
25017836 AAAAGAATAGCC-TTAGTGGCAAAGTT-T
1 AAAAGAATAGCCTTTA-TGACGTA-TTAC
* * *
25017863 AAAAGAATAGCCTTTGTGGCATATTAC
1 AAAAGAATAGCCTTTATGACGTATTAC
* *
25017890 AAAAGACTAGACTTTATG
1 AAAAGAATAGCCTTTATG
25017908 GAGAAGTCTA
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
26 4 0.05
27 72 0.90
28 4 0.05
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (27 bp):
AAAAGAATAGCCTTTATGACGTATTAC
Found at i:25017841 original size:54 final size:53
Alignment explanation
Indices: 25017782--25017934 Score: 157
Period size: 54 Copynumber: 2.8 Consensus size: 53
25017772 AACATGTCAA
* **
25017782 AAAAGAATAGCCTTTATGACGTATTGCAAAAGAATAGCCTTTGTGATGTATTAC
1 AAAAGAATAGCCTTTATGACGAATT-CAAAAGAATAGCCTTTGTGACATATTAC
* * * *
25017836 AAAAGAATAGCC-TTAGTGGCAAAGTTTAAAAGAATAGCCTTTGTGGCATATTAC
1 AAAAGAATAGCCTTTA-TGACGAA-TTCAAAAGAATAGCCTTTGTGACATATTAC
* * *
25017890 AAAAGACTAGACTTTATGGA-GAAGTCTAAAAGAATAGCCTTTGTG
1 AAAAGAATAGCCTTTAT-GACGAATTC-AAAAGAATAGCCTTTGTG
25017935 GGGAACTCTA
Statistics
Matches: 81, Mismatches: 13, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
53 4 0.05
54 71 0.88
55 6 0.07
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (53 bp):
AAAAGAATAGCCTTTATGACGAATTCAAAAGAATAGCCTTTGTGACATATTAC
Found at i:25017935 original size:54 final size:54
Alignment explanation
Indices: 25017809--25017935 Score: 168
Period size: 54 Copynumber: 2.4 Consensus size: 54
25017799 GACGTATTGC
*** *
25017809 AAAAGAATAGCCTTTGTGATGTATTACAAAAGAATAGCCTTAGTGGCAAAGTTT
1 AAAAGAATAGCCTTTGTGGCATATTACAAAAGAATAGCCTTAGTGGCAAAGTCT
* *
25017863 AAAAGAATAGCCTTTGTGGCATATTACAAAAGACTAGACTTTA-TGG-AGAAGTCT
1 AAAAGAATAGCCTTTGTGGCATATTACAAAAGAATAG-CCTTAGTGGCA-AAGTCT
25017917 AAAAGAATAGCCTTTGTGG
1 AAAAGAATAGCCTTTGTGG
25017936 GGAACTCTAG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
53 1 0.02
54 60 0.92
55 4 0.06
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (54 bp):
AAAAGAATAGCCTTTGTGGCATATTACAAAAGAATAGCCTTAGTGGCAAAGTCT
Found at i:25017944 original size:27 final size:27
Alignment explanation
Indices: 25017809--25017944 Score: 89
Period size: 27 Copynumber: 5.0 Consensus size: 27
25017799 GACGTATTGC
** * *
25017809 AAAAGAATAGCCTTTGTGATGTATTAC-
1 AAAAGAATAGCCTTTGTGGGGAAGT-CT
* ** *
25017836 AAAAGAATAGCCTTAGTGGCAAAGTTT
1 AAAAGAATAGCCTTTGTGGGGAAGTCT
* *
25017863 AAAAGAATAGCCTTTGT-GGCATATTAC-
1 AAAAGAATAGCCTTTGTGGGGA-AGT-CT
* * * *
25017890 AAAAGACTAGACTTTATGGAGAAGTCT
1 AAAAGAATAGCCTTTGTGGGGAAGTCT
*
25017917 AAAAGAATAGCCTTTGTGGGGAACTCT
1 AAAAGAATAGCCTTTGTGGGGAAGTCT
25017944 A
1 A
25017945 GATGGACTAT
Statistics
Matches: 81, Mismatches: 23, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
26 3 0.04
27 76 0.94
28 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.28
Consensus pattern (27 bp):
AAAAGAATAGCCTTTGTGGGGAAGTCT
Found at i:25020363 original size:48 final size:48
Alignment explanation
Indices: 25020251--25020367 Score: 137
Period size: 48 Copynumber: 2.4 Consensus size: 48
25020241 CCAAAATATA
* * **
25020251 TGTGGACGAAGCCACCAAATTCATAAACAACCTACCAGTACATATAGT
1 TGTGGACAAAGCCACCAAATTCACAAACAACCTACCAAAACATATAGT
* * *
25020299 TGTGGACAAAGCCACCAAATTCACAAACAAGCTGCCAAAACATGTAGGT
1 TGTGGACAAAGCCACCAAATTCACAAACAACCTACCAAAACATATA-GT
* *
25020348 TGTGGATAAA-TCACCAAATT
1 TGTGGACAAAGCCACCAAATT
25020368 TGAAGATTAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 48 0.81
49 11 0.19
ACGTcount: A:0.40, C:0.23, G:0.16, T:0.21
Consensus pattern (48 bp):
TGTGGACAAAGCCACCAAATTCACAAACAACCTACCAAAACATATAGT
Found at i:25021241 original size:12 final size:12
Alignment explanation
Indices: 25021217--25021253 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
25021207 GATCAAAATC
*
25021217 TTTC-TTTTCTT
1 TTTCTTTTTATT
25021228 TTTCTTTTTATT
1 TTTCTTTTTATT
25021240 TTTCTTTTTATT
1 TTTCTTTTTATT
25021252 TT
1 TT
25021254 CCTCTCTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 4 0.17
12 20 0.83
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTCTTTTTATT
Found at i:25021253 original size:11 final size:11
Alignment explanation
Indices: 25021217--25021254 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
25021207 GATCAAAATC
25021217 TTTCTTTTCT-T
1 TTTCTTTT-TAT
25021228 TTTCTTTTTATT
1 TTTCTTTTTA-T
25021240 TTTCTTTTTAT
1 TTTCTTTTTAT
25021251 TTTC
1 TTTC
25021255 CTCTCTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.04
11 13 0.52
12 11 0.44
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTCTTTTTAT
Found at i:25022681 original size:29 final size:29
Alignment explanation
Indices: 25022648--25022705 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 29
25022638 TTTATGGCTA
25022648 TGGACTATTT-TATTATTTTGGGACTTTCG
1 TGGACT-TTTATATTATTTTGGGACTTTCG
*
25022677 TGGACTTTTAAATTTTATTTTGGGACTTT
1 TGGACTTTT--ATATTATTTTGGGACTTT
25022706 AATTTGTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 3 0.12
29 6 0.24
31 16 0.64
ACGTcount: A:0.19, C:0.09, G:0.19, T:0.53
Consensus pattern (29 bp):
TGGACTTTTATATTATTTTGGGACTTTCG
Found at i:25023967 original size:22 final size:21
Alignment explanation
Indices: 25023951--25024000 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 21
25023941 GTGGTTTAAT
*
25023951 GGTGGTGATATGTTGGTTGTTG
1 GGTGGTGATATGATGGTT-TTG
25023973 GGTGGTGATATGATGGTTTTTG
1 GGTGGTGATATGATGG-TTTTG
25023995 GGTGGT
1 GGTGGT
25024001 ATTTCGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.10, C:0.00, G:0.46, T:0.44
Consensus pattern (21 bp):
GGTGGTGATATGATGGTTTTG
Found at i:25027428 original size:31 final size:31
Alignment explanation
Indices: 25027384--25027451 Score: 95
Period size: 31 Copynumber: 2.2 Consensus size: 31
25027374 GTTAAAGTTG
25027384 AATTCAATGTATTAAAAATA-AGTAATATTAATT
1 AATT-AATGTATTAAAAATAGA-TAATATTAA-T
25027417 AATTAAT-TATTAAAAATAGATAATATTAAT
1 AATTAATGTATTAAAAATAGATAATATTAAT
25027447 AATTA
1 AATTA
25027452 TTAATAATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
30 6 0.18
31 20 0.59
32 4 0.12
33 4 0.12
ACGTcount: A:0.54, C:0.01, G:0.04, T:0.40
Consensus pattern (31 bp):
AATTAATGTATTAAAAATAGATAATATTAAT
Found at i:25027455 original size:26 final size:27
Alignment explanation
Indices: 25027414--25027465 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
25027404 AGTAATATTA
25027414 ATTAATTAATTATTAAAAATAGATAAT
1 ATTAATTAATTATTAAAAATAGATAAT
*
25027441 ATTAA-TAATTATTAATAATAGATAA
1 ATTAATTAATTATTAAAAATAGATAA
25027466 AATCATATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (27 bp):
ATTAATTAATTATTAAAAATAGATAAT
Found at i:25029336 original size:41 final size:41
Alignment explanation
Indices: 25029291--25029374 Score: 141
Period size: 41 Copynumber: 2.0 Consensus size: 41
25029281 AATAAAAAGA
* *
25029291 ATACTTAAAATTTATTCAATTGTTAGTTGAACTAATTTTTT
1 ATACTTAAAATTTATTCAATTGTTAGTTGAACCAATTCTTT
*
25029332 ATACTTAAAATTTATTTAATTGTTAGTTGAACCAATTCTTT
1 ATACTTAAAATTTATTCAATTGTTAGTTGAACCAATTCTTT
25029373 AT
1 AT
25029375 CCATTTCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.08, G:0.07, T:0.50
Consensus pattern (41 bp):
ATACTTAAAATTTATTCAATTGTTAGTTGAACCAATTCTTT
Found at i:25032542 original size:25 final size:25
Alignment explanation
Indices: 25032488--25032561 Score: 103
Period size: 25 Copynumber: 3.0 Consensus size: 25
25032478 ATTATTCATA
* *
25032488 GTTGACTAATTGACAGCTTAGCACT
1 GTTGACTAATTGATAGCCTAGCACT
* * *
25032513 CTTGACTAATAGATAGCCTAGTACT
1 GTTGACTAATTGATAGCCTAGCACT
25032538 GTTGACTAATTGATAGCCTAGCAC
1 GTTGACTAATTGATAGCCTAGCAC
25032562 AATCTTGCTG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (25 bp):
GTTGACTAATTGATAGCCTAGCACT
Found at i:25041252 original size:108 final size:108
Alignment explanation
Indices: 25041063--25041277 Score: 430
Period size: 108 Copynumber: 2.0 Consensus size: 108
25041053 AGTAAAGATT
25041063 CCGATGGGTACTAGCAAGGTAATCCGCCAATACATTATATGAAAGGACAACAAACTTATCTGCAA
1 CCGATGGGTACTAGCAAGGTAATCCGCCAATACATTATATGAAAGGACAACAAACTTATCTGCAA
25041128 ATGATATATATACAAATTAATCAAACCAACTAAATAAGCTATA
66 ATGATATATATACAAATTAATCAAACCAACTAAATAAGCTATA
25041171 CCGATGGGTACTAGCAAGGTAATCCGCCAATACATTATATGAAAGGACAACAAACTTATCTGCAA
1 CCGATGGGTACTAGCAAGGTAATCCGCCAATACATTATATGAAAGGACAACAAACTTATCTGCAA
25041236 ATGATATATATACAAATTAATCAAACCAACTAAATAAGCTAT
66 ATGATATATATACAAATTAATCAAACCAACTAAATAAGCTAT
25041278 CTTTCAATTT
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 107 1.00
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (108 bp):
CCGATGGGTACTAGCAAGGTAATCCGCCAATACATTATATGAAAGGACAACAAACTTATCTGCAA
ATGATATATATACAAATTAATCAAACCAACTAAATAAGCTATA
Found at i:25043729 original size:15 final size:15
Alignment explanation
Indices: 25043709--25043762 Score: 99
Period size: 15 Copynumber: 3.6 Consensus size: 15
25043699 TTAATTTAAT
25043709 TCACGATTCTCATGC
1 TCACGATTCTCATGC
25043724 TCACGATTCTCATGC
1 TCACGATTCTCATGC
*
25043739 TCACGATTCTCATGT
1 TCACGATTCTCATGC
25043754 TCACGATTC
1 TCACGATTC
25043763 AATTCAATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.35
Consensus pattern (15 bp):
TCACGATTCTCATGC
Found at i:25050896 original size:23 final size:22
Alignment explanation
Indices: 25050853--25050896 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
25050843 TTCTAAGTCG
25050853 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
25050876 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
25050897 TTAGTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:25051376 original size:7 final size:7
Alignment explanation
Indices: 25051364--25051394 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
25051354 TCCAAAATAA
25051364 AATGTCC
1 AATGTCC
25051371 AATGTCC
1 AATGTCC
25051378 AATGTCC
1 AATGTCC
*
25051385 AAAGTCC
1 AATGTCC
25051392 AAT
1 AAT
25051395 TACAACCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.35, C:0.26, G:0.13, T:0.26
Consensus pattern (7 bp):
AATGTCC
Found at i:25056599 original size:21 final size:21
Alignment explanation
Indices: 25056560--25056601 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
25056550 TTTGCCTAAG
*
25056560 ATATGAATTAAATTGAATTGA
1 ATATGAATTAAATTAAATTGA
**
25056581 ATATGAATTGTATTAAATTGA
1 ATATGAATTAAATTAAATTGA
25056602 GTTAAATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.40
Consensus pattern (21 bp):
ATATGAATTAAATTAAATTGA
Found at i:25059215 original size:23 final size:23
Alignment explanation
Indices: 25059185--25059228 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
25059175 TATCTTTGGT
25059185 AAAAGACTCAGCATACCAGTGGC
1 AAAAGACTCAGCATACCAGTGGC
25059208 AAAAGACTCAGCATACCAGTG
1 AAAAGACTCAGCATACCAGTG
25059229 CTTGAAACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.25, G:0.20, T:0.14
Consensus pattern (23 bp):
AAAAGACTCAGCATACCAGTGGC
Found at i:25062545 original size:32 final size:32
Alignment explanation
Indices: 25062505--25062569 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
25062495 TTAGTAGAGT
25062505 TATATATTTTTGAGATTGTCATGCTACATGGA
1 TATATATTTTTGAGATTGTCATGCTACATGGA
25062537 TATATATTTTTGAGATTGTCATGCTACATGGA
1 TATATATTTTTGAGATTGTCATGCTACATGGA
25062569 T
1 T
25062570 TACCGTCTCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (32 bp):
TATATATTTTTGAGATTGTCATGCTACATGGA
Found at i:25064893 original size:27 final size:25
Alignment explanation
Indices: 25064844--25064916 Score: 74
Period size: 27 Copynumber: 2.8 Consensus size: 25
25064834 CCTGATATAT
*
25064844 GGCTCTTCAGAGCTTCCCGATTAAA
1 GGCTCTTCAGAGCTTCCCAATTAAA
* *
25064869 GGCTCTTTCATGAGCTTCCTAATTAATT
1 GGCTC-TTCA-GAGCTTCCCAATTAA-A
* *
25064897 GGGTCTTCGGAGCTTCCCAA
1 GGCTCTTCAGAGCTTCCCAA
25064917 AATTAGCTCA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
25 5 0.13
26 14 0.36
27 16 0.41
28 4 0.10
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (25 bp):
GGCTCTTCAGAGCTTCCCAATTAAA
Found at i:25065007 original size:25 final size:24
Alignment explanation
Indices: 25064953--25065037 Score: 82
Period size: 25 Copynumber: 3.4 Consensus size: 24
25064943 ATTAACTCGT
* *
25064953 ATGAGCTTCCTGTTAATAGCTCTC
1 ATGAGCTTCCTGTTAATGGCTCAC
25064977 -TGGAGCTTCCTGTTACATGGCTCAC
1 AT-GAGCTTCCTGTTA-ATGGCTCAC
* * *
25065002 ATGAGCTTCCCGTTTATGTGCTCAT
1 ATGAGCTTCCTGTTAATG-GCTCAC
25065027 ATGAGCATTCC
1 ATGAGC-TTCC
25065038 CAAATATGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
23 1 0.02
24 16 0.31
25 29 0.57
26 5 0.10
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.35
Consensus pattern (24 bp):
ATGAGCTTCCTGTTAATGGCTCAC
Found at i:25073213 original size:31 final size:29
Alignment explanation
Indices: 25073169--25073226 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 29
25073159 TGTTTATCTC
25073169 AAGATAAACATTAA-ATTAAATTTAATATT
1 AAGATAAACATTAATATTAAA-TTAATATT
25073198 AAGATAATCACATTAATATTAAATTAATA
1 AAGATAA--ACATTAATATTAAATTAATA
25073227 AAATACTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 7 0.27
31 13 0.50
32 6 0.23
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.36
Consensus pattern (29 bp):
AAGATAAACATTAATATTAAATTAATATT
Found at i:25073250 original size:37 final size:36
Alignment explanation
Indices: 25073209--25073285 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 36
25073199 AGATAATCAC
*
25073209 ATTAATATTAAA-TTAATA-AAATACTATTAAGATAAGT
1 ATTAA-ATTAAATTTAATATAAA-ACTATTAAAATAA-T
*
25073246 ATTAAATTAAATTTAATATTAAACTATTAAAATAAT
1 ATTAAATTAAATTTAATATAAAACTATTAAAATAAT
25073282 ATTA
1 ATTA
25073286 TTTTTAGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
36 11 0.31
37 23 0.64
38 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (36 bp):
ATTAAATTAAATTTAATATAAAACTATTAAAATAAT
Found at i:25073721 original size:19 final size:19
Alignment explanation
Indices: 25073683--25073722 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
25073673 AAAATATTAT
* * *
25073683 ATTAATTTTAATTTATTTG
1 ATTAATTTAAATGTACTTG
25073702 ATTAATTTAAATGTACTTG
1 ATTAATTTAAATGTACTTG
25073721 AT
1 AT
25073723 AAAATTTATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (19 bp):
ATTAATTTAAATGTACTTG
Found at i:25076471 original size:104 final size:104
Alignment explanation
Indices: 25076291--25076514 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
25076281 TGTATATAAA
** * *
25076291 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
25076356 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
25076395 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
25076459 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
25076499 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
25076515 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:25076566 original size:71 final size:72
Alignment explanation
Indices: 25076433--25076584 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
25076423 TCATTGGTGG
* *
25076433 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
25076498 GAGGGGT
66 GAGGGGT
***
25076505 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
25076569 GAGGGGT
66 GAGGGGT
25076576 TGCTAAGTG
1 TGCTAAGTG
25076585 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:25080215 original size:86 final size:87
Alignment explanation
Indices: 25080113--25080291 Score: 261
Period size: 86 Copynumber: 2.1 Consensus size: 87
25080103 AGTGTTCCAA
*
25080113 CTTTCAAATTGCCATTAAGATGATATCATTCAAAATTAAAAAAATTCACACACTTTTATGA-TTT
1 CTTTCAAATTGCCATTAAGATGATATCATACAAAATTAAAAAAATTCACACACTTTTATGATTTT
* *
25080177 TCCAATGTGCATGTATAGTAAC
66 TCCAATGTCCATGTATAGCAAC
* * * *
25080199 CTTTCAAATTGCCATTAAGATGATATCATACAACATTAAACAATTTCACATACTTTTATGATTTT
1 CTTTCAAATTGCCATTAAGATGATATCATACAAAATTAAAAAAATTCACACACTTTTATGA-TTT
* *
25080264 TTGCATTGTCCATGTATAGCAAC
65 TTCCAATGTCCATGTATAGCAAC
25080287 CTTTC
1 CTTTC
25080292 CAATATAACA
Statistics
Matches: 82, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 56 0.68
88 26 0.32
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (87 bp):
CTTTCAAATTGCCATTAAGATGATATCATACAAAATTAAAAAAATTCACACACTTTTATGATTTT
TCCAATGTCCATGTATAGCAAC
Found at i:25090650 original size:50 final size:50
Alignment explanation
Indices: 25090533--25090660 Score: 148
Period size: 50 Copynumber: 2.6 Consensus size: 50
25090523 AAGTTCATGA
* * * *
25090533 TTTAATTATGTCATGCATTATGTAACTCTCATAATAGTTATGTTTGCATC
1 TTTAATTATGTCATGCATTATGTAACTCCCATAATAGGTAAGTGTGCATC
* ** * *
25090583 TTAAATTATGAAATGCATTATGTAACTCCCATGATAGGTAAGTGTGCATT
1 TTTAATTATGTCATGCATTATGTAACTCCCATAATAGGTAAGTGTGCATC
* * *
25090633 TTTAATTAAGTCTTGCATTAAGTAACTC
1 TTTAATTATGTCATGCATTATGTAACTC
25090661 ATTTGTTCAT
Statistics
Matches: 63, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 63 1.00
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.41
Consensus pattern (50 bp):
TTTAATTATGTCATGCATTATGTAACTCCCATAATAGGTAAGTGTGCATC
Found at i:25091724 original size:21 final size:21
Alignment explanation
Indices: 25091677--25091724 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
25091667 GAAGATATTG
*
25091677 AAAAAAGGAGATTAGAATTAT
1 AAAAAAGGACATTAGAATTAT
* *
25091698 AGAAAAGGAACATTCGAATT-T
1 AAAAAAGG-ACATTAGAATTAT
25091719 AAAAAA
1 AAAAAA
25091725 ATGATTCTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.58, C:0.04, G:0.17, T:0.21
Consensus pattern (21 bp):
AAAAAAGGACATTAGAATTAT
Found at i:25092692 original size:21 final size:20
Alignment explanation
Indices: 25092667--25092727 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
25092657 TTTTTTTATG
25092667 AAAGAAAATGAAAGAAAAATA
1 AAAGAAAATGAAAGAAAAA-A
* * *
25092688 AAAGAGATTGAGAGAAGAAAA
1 AAAGAAAATGAAAGAA-AAAA
* *
25092709 AAAGAAAAGGAAATAAAAA
1 AAAGAAAATGAAAGAAAAA
25092728 GAGAGTGTGT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
20 3 0.10
21 25 0.81
22 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.08
Consensus pattern (20 bp):
AAAGAAAATGAAAGAAAAAA
Found at i:25092759 original size:15 final size:17
Alignment explanation
Indices: 25092723--25092763 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
25092713 AAAAGGAAAT
25092723 AAAAAGAGAGTGTGTGA
1 AAAAAGAGAGTGTGTGA
*
25092740 GAAAAGA-AGT-TGTGA
1 AAAAAGAGAGTGTGTGA
25092755 AAAAAGAGA
1 AAAAAGAGA
25092764 ATGAAAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 11 0.52
16 4 0.19
17 6 0.29
ACGTcount: A:0.54, C:0.00, G:0.32, T:0.15
Consensus pattern (17 bp):
AAAAAGAGAGTGTGTGA
Found at i:25098048 original size:16 final size:16
Alignment explanation
Indices: 25098027--25098060 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
25098017 GTGCAATAAC
25098027 ATATTTGCCTATTAAG
1 ATATTTGCCTATTAAG
*
25098043 ATATTTGTCTATTAAG
1 ATATTTGCCTATTAAG
25098059 AT
1 AT
25098061 TTGTTTAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (16 bp):
ATATTTGCCTATTAAG
Found at i:25104918 original size:21 final size:21
Alignment explanation
Indices: 25104892--25104932 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
25104882 AGACTAATTT
25104892 TTATCCTAAATTTT-AATTTAA
1 TTATCC-AAATTTTCAATTTAA
*
25104913 TTATCCAATTTTTCAATTTA
1 TTATCCAAATTTTCAATTTA
25104933 TTGAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (21 bp):
TTATCCAAATTTTCAATTTAA
Found at i:25112591 original size:27 final size:27
Alignment explanation
Indices: 25112539--25112592 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
25112529 AGCTAAAGTT
*
25112539 CACCAGAAGGCTTGGCGAGCTAGTATA
1 CACCAGAAGGCTTGGCGAGATAGTATA
* * *
25112566 CACCAGGAGGTTTGGCGAGATGGTATA
1 CACCAGAAGGCTTGGCGAGATAGTATA
25112593 TGCCAACAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.33, T:0.20
Consensus pattern (27 bp):
CACCAGAAGGCTTGGCGAGATAGTATA
Found at i:25113188 original size:94 final size:94
Alignment explanation
Indices: 25113027--25113215 Score: 369
Period size: 94 Copynumber: 2.0 Consensus size: 94
25113017 TAGCTATTAG
25113027 GATCTAAGGAAAGACTATTTCTCTATTATGTTTAGAAGTAATTAAGAAAGGTTCGCAAACAAAGG
1 GATCTAAGGAAAGACTATTTCTCTATTATGTTTAGAAGTAATTAAGAAAGGTTCGCAAACAAAGG
25113092 AAACTTGGTTCGCCAAAAGATAGATATGT
66 AAACTTGGTTCGCCAAAAGATAGATATGT
25113121 GATCTAAGGAAAGACTATTTCTCTATTATGTTTAGAAGTAATTAAGAAAGGTTCGCAAACAAAGG
1 GATCTAAGGAAAGACTATTTCTCTATTATGTTTAGAAGTAATTAAGAAAGGTTCGCAAACAAAGG
*
25113186 AAACTTGGTTTGCCAAAAGATAGATATGT
66 AAACTTGGTTCGCCAAAAGATAGATATGT
25113215 G
1 G
25113216 CGAACCTAGG
Statistics
Matches: 94, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (94 bp):
GATCTAAGGAAAGACTATTTCTCTATTATGTTTAGAAGTAATTAAGAAAGGTTCGCAAACAAAGG
AAACTTGGTTCGCCAAAAGATAGATATGT
Found at i:25120029 original size:21 final size:21
Alignment explanation
Indices: 25120005--25120047 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
25119995 AGAAATTATG
25120005 AGAGTAAAAATTTGCAATGAA
1 AGAGTAAAAATTTGCAATGAA
25120026 AGAGTAAAAATTTGCAATGAA
1 AGAGTAAAAATTTGCAATGAA
25120047 A
1 A
25120048 CAGTTTTGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.53, C:0.05, G:0.19, T:0.23
Consensus pattern (21 bp):
AGAGTAAAAATTTGCAATGAA
Found at i:25122509 original size:25 final size:26
Alignment explanation
Indices: 25122472--25122520 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
25122462 GATTCCCATA
25122472 TTTTTTTCGTTTTAAGTAATTTAATT
1 TTTTTTTCGTTTTAAGTAATTTAATT
* *
25122498 TTTTTTTC-TTTTATGTTATTTAA
1 TTTTTTTCGTTTTAAGTAATTTAA
25122521 ACTTTCCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.20, C:0.04, G:0.06, T:0.69
Consensus pattern (26 bp):
TTTTTTTCGTTTTAAGTAATTTAATT
Found at i:25122685 original size:14 final size:14
Alignment explanation
Indices: 25122649--25122682 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
25122639 TCATCATTTG
25122649 CCTATAACCAAAAC
1 CCTATAACCAAAAC
25122663 CCTATAACCAAAAC
1 CCTATAACCAAAAC
25122677 CC-ATAA
1 CCTATAA
25122683 ACCCATACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
CCTATAACCAAAAC
Found at i:25133802 original size:27 final size:27
Alignment explanation
Indices: 25133772--25133829 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
25133762 CTAACGGACT
*
25133772 ATTCCTTCAGCGTTCGTCATATTTACC
1 ATTCCTTCAGAGTTCGTCATATTTACC
*
25133799 ATTCCTTCAGAGTTTGTCATATTTACC
1 ATTCCTTCAGAGTTCGTCATATTTACC
25133826 ATTC
1 ATTC
25133830 TTCCCTTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.21, C:0.26, G:0.10, T:0.43
Consensus pattern (27 bp):
ATTCCTTCAGAGTTCGTCATATTTACC
Done.