Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 81 of 211
Found at i:25133951 original size:27 final size:27
Alignment explanation
Indices: 25133906--25134000 Score: 97
Period size: 27 Copynumber: 3.5 Consensus size: 27
25133896 ATGCACCATG
**
25133906 AAGGCATTCC-TTTCTATAGATCGCCACA
1 AAGGC-TTCCATTTC-ATAGATTTCCACA
*
25133934 AAGGCTTCCATTTCATAGGTTTCCACA
1 AAGGCTTCCATTTCATAGATTTCCACA
* *
25133961 AA-GCTT-CATTTCATATATTTTCCATA
1 AAGGCTTCCATTTCATAGA-TTTCCACA
25133987 AAGGCTTCCATTTC
1 AAGGCTTCCATTTC
25134001 TTTAGTGTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
25 9 0.16
26 13 0.23
27 20 0.35
28 15 0.26
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (27 bp):
AAGGCTTCCATTTCATAGATTTCCACA
Found at i:25133982 original size:26 final size:27
Alignment explanation
Indices: 25133929--25134000 Score: 94
Period size: 26 Copynumber: 2.7 Consensus size: 27
25133919 CTATAGATCG
*
25133929 CCACAAAGGCTTCCATTTCATAGGTTT
1 CCACAAAGGCTTCCATTTCATAAGTTT
*
25133956 CCACAAA-GCTT-CATTTCATATATTTT
1 CCACAAAGGCTTCCATTTCATA-AGTTT
*
25133982 CCATAAAGGCTTCCATTTC
1 CCACAAAGGCTTCCATTTC
25134001 TTTAGTGTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
25 9 0.23
26 13 0.33
27 11 0.28
28 6 0.15
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.36
Consensus pattern (27 bp):
CCACAAAGGCTTCCATTTCATAAGTTT
Found at i:25137899 original size:27 final size:26
Alignment explanation
Indices: 25137853--25137905 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
25137843 AGATGTGAAG
*
25137853 GGGGTTGCTAAGTGCGGATTCCGCCGA
1 GGGGTTGCTAAGTACGGATTCC-CCGA
**
25137880 GGGGTTGCTAAGTATTGATTCCCCGA
1 GGGGTTGCTAAGTACGGATTCCCCGA
25137906 ATCATTTGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.17, C:0.21, G:0.36, T:0.26
Consensus pattern (26 bp):
GGGGTTGCTAAGTACGGATTCCCCGA
Found at i:25137959 original size:102 final size:102
Alignment explanation
Indices: 25137778--25137976 Score: 299
Period size: 102 Copynumber: 2.0 Consensus size: 102
25137768 GAATATAAAG
* * *
25137778 GGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGATTGCTAAGTGCTGATTCCATCGTATCTT
1 GGGGTTGCTAAGTACTGATTCCCCGAATCATTGGTGATTGCTAAGTGCTGATTCCACCGTATCTT
* *
25137843 AGATGTGAAGGGGGTTGCTAAGTGCGGATTCCGCCGA
66 AAATGTGAAAGGGGTTGCTAAGTGCGGATTCCGCCGA
* * * *
25137880 GGGGTTGCTAAGTATTGATTCCCCGAATCATTTGTGGTTGCTAAGTGTTGATTCCACCGTATCTT
1 GGGGTTGCTAAGTACTGATTCCCCGAATCATTGGTGATTGCTAAGTGCTGATTCCACCGTATCTT
* *
25137945 AAATGTGAAAGGGGTTGCTAGGTGCTGATTCC
66 AAATGTGAAAGGGGTTGCTAAGTGCGGATTCC
25137977 CCAATTCATT
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
102 86 1.00
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.33
Consensus pattern (102 bp):
GGGGTTGCTAAGTACTGATTCCCCGAATCATTGGTGATTGCTAAGTGCTGATTCCACCGTATCTT
AAATGTGAAAGGGGTTGCTAAGTGCGGATTCCGCCGA
Found at i:25144837 original size:27 final size:26
Alignment explanation
Indices: 25144800--25144850 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
25144790 GAATATAAAG
*
25144800 GGGGTTGCTAAGTGCTGATTGCCCCAA
1 GGGGTTACTAAGTGCTGATT-CCCCAA
25144827 GGGGTTACTAAGTGCTGATTCCCC
1 GGGGTTACTAAGTGCTGATTCCCC
25144851 GATTCATTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.18, C:0.24, G:0.31, T:0.27
Consensus pattern (26 bp):
GGGGTTACTAAGTGCTGATTCCCCAA
Found at i:25144879 original size:33 final size:33
Alignment explanation
Indices: 25144829--25145139 Score: 134
Period size: 33 Copynumber: 8.8 Consensus size: 33
25144819 TGCCCCAAGG
*
25144829 GGTTACTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * * *
25144862 GCTTGCTAAGTGTTGATTCCACCGTATCTTAAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-TG---GT
25144904 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * *
25144937 GGTTGCTAAGTACTGATTCCACCGTATCTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-T---GGT
25144979 GGTTGCTAAGTGCTGATT-CCC---TCGA--GG-
1 GGTTGCTAAGTGCTGATTCCCCGATTC-ATTGGT
* ** *
25145006 GGTCGCTAAGTATTGATTCCCCGAATCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* * * *
25145039 GGTTTCTAAGTGTTGATCCCACCGTATCTTAAATGTTAAAGG-
1 GGTTGCTAAGTGCTGATTCC-CCG-A--TT-CA--TT---GGT
*
25145081 GGTTGCTAAGTGCTGATTCCCCGACTCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
*
25145114 GGTTGCTAAGTGCTGAATCCACCGAT
1 GGTTGCTAAGTGCTGATTCC-CCGAT
25145140 AACGGATAAC
Statistics
Matches: 210, Mismatches: 30, Indels: 75
0.67 0.10 0.24
Matches are distributed among these distances:
27 15 0.07
28 5 0.02
30 1 0.00
31 2 0.01
32 4 0.02
33 72 0.34
34 15 0.07
35 5 0.02
36 2 0.01
37 8 0.04
38 8 0.04
39 3 0.01
40 6 0.03
41 7 0.03
42 55 0.26
43 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.26, T:0.33
Consensus pattern (33 bp):
GGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
Found at i:25144923 original size:42 final size:41
Alignment explanation
Indices: 25144864--25144998 Score: 160
Period size: 42 Copynumber: 3.4 Consensus size: 41
25144854 TCATTGGTGC
*
25144864 TTGCTAAGTGTTGATTCCACCGTATCTTAAATGTGAAAGGGG
1 TTGCTAAGTGCTGATTCCACCGTATCTTAAATGTG-AAGGGG
* *
25144906 TTGCTAAGTGCTGATTCC-CCG-A--TT-CAT-TG--GTGG
1 TTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGGGG
*
25144939 TTGCTAAGTACTGATTCCACCGTATCTTAAATGTGAAGGGGG
1 TTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAA-GGGG
25144981 TTGCTAAGTGCTGATTCC
1 TTGCTAAGTGCTGATTCC
25144999 CTCGAGGGGT
Statistics
Matches: 77, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
33 20 0.26
34 3 0.04
35 1 0.01
36 2 0.03
37 4 0.05
38 4 0.05
39 2 0.03
40 1 0.01
41 3 0.04
42 37 0.48
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (41 bp):
TTGCTAAGTGCTGATTCCACCGTATCTTAAATGTGAAGGGG
Found at i:25144954 original size:75 final size:75
Alignment explanation
Indices: 25144825--25144999 Score: 305
Period size: 75 Copynumber: 2.3 Consensus size: 75
25144815 TGATTGCCCC
* **
25144825 AAGGGGTTACTAAGTGCTGATTCCCCGATTCATTGGTGCTTGCTAAGTGTTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGCTTGCTAAGTACTGATTCCACCGTATC
25144890 TTAAATGTGA
66 TTAAATGTGA
*
25144900 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTACTGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGCTTGCTAAGTACTGATTCCACCGTATC
25144965 TTAAATGTGA
66 TTAAATGTGA
*
25144975 AGGGGGTTGCTAAGTGCTGATTCCC
1 AAGGGGTTGCTAAGTGCTGATTCCC
25145000 TCGAGGGGTC
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 95 1.00
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGCTTGCTAAGTACTGATTCCACCGTATC
TTAAATGTGA
Found at i:25145007 original size:102 final size:102
Alignment explanation
Indices: 25144901--25145101 Score: 312
Period size: 102 Copynumber: 2.0 Consensus size: 102
25144891 TAAATGTGAA
* * * *
25144901 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTACTGATTCCACCGTATCT
1 AGGGGTCGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTACTGATCCCACCGTATCT
*
25144966 TAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCTCG
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCTCG
* * **
25145003 AGGGGTCGCTAAGTATTGATTCCCCGAATCATTGGTGGTTTCTAAGTGTTGATCCCACCGTATCT
1 AGGGGTCGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTACTGATCCCACCGTATCT
*
25145068 TAAATGTTAAAGGGGTTGCTAAGTGCTGATTCCC
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCC
25145102 CGACTCATTG
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 89 1.00
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (102 bp):
AGGGGTCGCTAAGTACTGATTCCCCGAATCATTGGTGGTTGCTAAGTACTGATCCCACCGTATCT
TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCTCG
Found at i:25145093 original size:177 final size:177
Alignment explanation
Indices: 25144797--25145137 Score: 549
Period size: 177 Copynumber: 1.9 Consensus size: 177
25144787 ATTGAATATA
* * *
25144797 AAGGGGGTTGCTAAGTGCTGATTGCCCCAAGGGGTTACTAAGTGCTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTGCCCCAAGGGGTCACTAAGTACTGATTCCCCGAATCATTGGT
*
25144862 GCTTGCTAAGTGTTGATTCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
66 GCTTGCTAAGTGTTGATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
* *
25144927 ATTCATTGGTGGTTGCTAAGTACTGATTCCACCGTATCTTAAATGTG
131 ACTCATTGGTGGTTGCTAAGTACTGAATCCACCGTATCTTAAATGTG
* * *
25144974 AAGGGGGTTGCTAAGTGCTGATT-CCCTCGAGGGGTCGCTAAGTATTGATTCCCCGAATCATTGG
1 AAGGGGGTTGCTAAGTGCTGATTGCCC-CAAGGGGTCACTAAGTACTGATTCCCCGAATCATTGG
* * *
25145038 TGGTTTCTAAGTGTTGATCCCACCGTATCTTAAATGTTAAAGGGGTTGCTAAGTGCTGATTCCCC
65 TGCTTGCTAAGTGTTGATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
*
25145103 GACTCATTGGTGGTTGCTAAGTGCTGAATCCACCG
130 GACTCATTGGTGGTTGCTAAGTACTGAATCCACCG
25145138 ATAACGGATA
Statistics
Matches: 150, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
176 3 0.02
177 147 0.98
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (177 bp):
AAGGGGGTTGCTAAGTGCTGATTGCCCCAAGGGGTCACTAAGTACTGATTCCCCGAATCATTGGT
GCTTGCTAAGTGTTGATCCCACCGTATCTTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCG
ACTCATTGGTGGTTGCTAAGTACTGAATCCACCGTATCTTAAATGTG
Found at i:25146819 original size:51 final size:48
Alignment explanation
Indices: 25146687--25146879 Score: 181
Period size: 51 Copynumber: 3.9 Consensus size: 48
25146677 AAGTTGCTAG
* * * *
25146687 GTCACGTGTGTAGTACTATGTGCAGGCTACTACATGTACTGGAAT-GATAG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTAC-CGAATAG-T-T
* * *
25146737 GTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGCTT
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAG-TT
* * * *
25146786 CGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAATT
1 -G-TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-CCGA--ATAGTT
* *
25146839 GTCACATGTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCG
25146880 GGTATCACTT
Statistics
Matches: 118, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
49 4 0.03
50 39 0.33
51 67 0.57
52 4 0.03
53 2 0.02
54 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (48 bp):
GTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATAGTT
Found at i:25151408 original size:40 final size:40
Alignment explanation
Indices: 25151316--25151640 Score: 188
Period size: 40 Copynumber: 8.5 Consensus size: 40
25151306 AAAGTTTGAC
* *
25151316 GCCCAGCGCTAGTCGAATAAACCGACGATATTAAAGGAGT
1 GCCCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGT
* *
25151356 GTCCAACGCTAGTCGGATAAACCGACGATATTAAAGGTGT
1 GCCCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGT
* * * *
25151396 TCCCAGCACTAGTCGGAT-AA-CTA--A-A--AAAGATTTGT
1 GCCCAGCGCTAGTCGGATAAACCGACGATATTAAAG--GTGT
* * * *
25151431 GCCCAGCGCTAGTTGGATAAACTGGCTATATTAAAGGTGT
1 GCCCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGT
* * *
25151471 GCCCAGCACTAGTCGGAT-AA-CTA--A-A--AAAGATTTGT
1 GCCCAGCGCTAGTCGGATAAACCGACGATATTAAAG--GTGT
* * * *
25151506 GCCCAGCGCTAGTTGGATAAACTGGCTATATTAAAGGTGT
1 GCCCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGT
* * * * *
25151546 GCCCATCACTAGTTGGAT-AA-C--CGA-A--AAAGATTT
1 GCCCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGT
* *
25151579 GCGGCCAGCGCTAGCCGGATAAACCGACAATATTAAAGGTGT
1 GC--CCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGT
* * *
25151621 GACTAGCACTAGTCGGATAA
1 GCCCAGCGCTAGTCGGATAA
25151641 CTGACAAAGA
Statistics
Matches: 212, Mismatches: 46, Indels: 54
0.68 0.15 0.17
Matches are distributed among these distances:
33 16 0.08
35 52 0.25
36 10 0.05
37 1 0.00
38 2 0.01
39 10 0.05
40 106 0.50
42 15 0.07
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (40 bp):
GCCCAGCGCTAGTCGGATAAACCGACGATATTAAAGGTGT
Found at i:25151443 original size:35 final size:35
Alignment explanation
Indices: 25151397--25151525 Score: 127
Period size: 35 Copynumber: 3.5 Consensus size: 35
25151387 TAAAGGTGTT
25151397 CCCAGCACTAGTCGGATAACTAAAAAAGATTTGTG
1 CCCAGCACTAGTCGGATAACTAAAAAAGATTTGTG
* * * *
25151432 CCCAGCGCTAGTTGGATAAACTGGCTATATTAAAG--GTGTG
1 CCCAGCACTAGTCGGAT-AA----CTA-A-AAAAGATTTGTG
25151472 CCCAGCACTAGTCGGATAACTAAAAAAGATTTGTG
1 CCCAGCACTAGTCGGATAACTAAAAAAGATTTGTG
* *
25151507 CCCAGCGCTAGTTGGATAA
1 CCCAGCACTAGTCGGATAA
25151526 ACTGGCTATA
Statistics
Matches: 75, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
33 4 0.05
34 1 0.01
35 39 0.52
36 2 0.03
39 2 0.03
40 22 0.29
41 1 0.01
42 4 0.05
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (35 bp):
CCCAGCACTAGTCGGATAACTAAAAAAGATTTGTG
Found at i:25151450 original size:75 final size:75
Alignment explanation
Indices: 25151362--25151681 Score: 433
Period size: 75 Copynumber: 4.3 Consensus size: 75
25151352 GAGTGTCCAA
* * *
25151362 CGCTAGTCGGATAAACCGACGATATTAAAGGTGTTCCCAGCACTAGTCGGATAACTAAAAAAGAT
1 CGCTAGTTGGATAAACCGACTATATTAAAGGTGTGCCCAGCACTAGTCGGATAACTAAAAAAGAT
*
25151427 TTGTGCCCAG
66 TTGCGCCCAG
* *
25151437 CGCTAGTTGGATAAACTGGCTATATTAAAGGTGTGCCCAGCACTAGTCGGATAACTAAAAAAGAT
1 CGCTAGTTGGATAAACCGACTATATTAAAGGTGTGCCCAGCACTAGTCGGATAACTAAAAAAGAT
*
25151502 TTGTGCCCAG
66 TTGCGCCCAG
* * * * **
25151512 CGCTAGTTGGATAAACTGGCTATATTAAAGGTGTGCCCATCACTAGTTGGATAACCGAAAAAGAT
1 CGCTAGTTGGATAAACCGACTATATTAAAGGTGTGCCCAGCACTAGTCGGATAACTAAAAAAGAT
*
25151577 TTGCGGCCAG
66 TTGCGCCCAG
** * * * * *
25151587 CGCTAGCCGGATAAACCGACAATATTAAAGGTGTGACTAGCACTAGTCGGATAACTGACAAAGAT
1 CGCTAGTTGGATAAACCGACTATATTAAAGGTGTGCCCAGCACTAGTCGGATAACTAAAAAAGAT
25151652 TTGCGCCCAG
66 TTGCGCCCAG
* *
25151662 CGCTAGTTAGATAAGCCGAC
1 CGCTAGTTGGATAAACCGAC
25151682 AAGCACATAC
Statistics
Matches: 218, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 218 1.00
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23
Consensus pattern (75 bp):
CGCTAGTTGGATAAACCGACTATATTAAAGGTGTGCCCAGCACTAGTCGGATAACTAAAAAAGAT
TTGCGCCCAG
Found at i:25155065 original size:22 final size:22
Alignment explanation
Indices: 25155040--25155083 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
25155030 TCATGCAACG
*
25155040 TGCACTCCTTATTTTACACATA
1 TGCACCCCTTATTTTACACATA
* *
25155062 TGCACCCCTTTTTTTCCACATA
1 TGCACCCCTTATTTTACACATA
25155084 CTTCCCTTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.32, G:0.05, T:0.41
Consensus pattern (22 bp):
TGCACCCCTTATTTTACACATA
Found at i:25159337 original size:23 final size:23
Alignment explanation
Indices: 25159311--25159355 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
25159301 AGAAAAGAAG
25159311 TAAGCATAAAGCTTAGTAAGTTA
1 TAAGCATAAAGCTTAGTAAGTTA
25159334 TAAGCATAAAGCTTAGTAAGTT
1 TAAGCATAAAGCTTAGTAAGTT
25159356 TACTAGCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (23 bp):
TAAGCATAAAGCTTAGTAAGTTA
Found at i:25159783 original size:50 final size:50
Alignment explanation
Indices: 25159676--25159910 Score: 272
Period size: 50 Copynumber: 4.7 Consensus size: 50
25159666 CATGCCAAAT
* * * ** * * * *
25159676 CCATATCCCAGACACGGTCTTACATGGGAAGTTCTCATATTGGTGCCTATG
1 CCATGTCCCAGACATGGTCTTACA-GGGGACCTCTCATCTCGGTGCCAACG
* * * *
25159727 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGCGCCAATG
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACG
* * * *
25159777 CCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGTTACCAACA
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACG
* *
25159827 CCATGTCCCAGACATAGTCTTACATGGGACCTCTCATCTCGGTGCCAACG
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACG
* *
25159877 CCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCT
25159911 TTACCCAAAT
Statistics
Matches: 161, Mismatches: 23, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 140 0.87
51 21 0.13
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCCAACG
Found at i:25159849 original size:100 final size:100
Alignment explanation
Indices: 25159727--25159910 Score: 305
Period size: 100 Copynumber: 1.8 Consensus size: 100
25159717 GGTGCCTATG
* * * *
25159727 CCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGCGCCAATGCCATGTCCCAGACAT
1 CCATGTCCCAGACATAGTCTTACAGGGGACCTCTCATCTCGGCGCCAACGCCATGTCCCAGACAT
25159792 GGTCTTACATGGGACCTCTCATCTCGTTACCAACA
66 GGTCTTACATGGGACCTCTCATCTCGTTACCAACA
* *
25159827 CCATGTCCCAGACATAGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACAT
1 CCATGTCCCAGACATAGTCTTACAGGGGACCTCTCATCTCGGCGCCAACGCCATGTCCCAGACAT
*
25159892 GGTCTTACATGGGATCTCT
66 GGTCTTACATGGGACCTCT
25159911 TTACCCAAAT
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 77 1.00
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.26
Consensus pattern (100 bp):
CCATGTCCCAGACATAGTCTTACAGGGGACCTCTCATCTCGGCGCCAACGCCATGTCCCAGACAT
GGTCTTACATGGGACCTCTCATCTCGTTACCAACA
Found at i:25167326 original size:50 final size:50
Alignment explanation
Indices: 25167205--25167397 Score: 278
Period size: 50 Copynumber: 3.8 Consensus size: 50
25167195 GATAATAACA
* * ** *
25167205 TGCCAAAGCCATGTCCAAGACATGGTCTTACATGGGAAATTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTT-TCATCTCGG
* * **
25167256 TGCCTATGCCATGTCCCAGACATGGTCTTACGGGGGACCTTTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
*
25167306 CGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
*
25167356 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTTT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTT
25167398 TTACCCAAAT
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 93 0.73
51 34 0.27
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATCTCGG
Found at i:25172243 original size:22 final size:21
Alignment explanation
Indices: 25172218--25172264 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
25172208 ATTATAAATT
*
25172218 ATATAAATTATAATTATTGTTA
1 ATATAAATTATAAATATT-TTA
*
25172240 ATATTAATTATAAATATTTTA
1 ATATAAATTATAAATATTTTA
25172261 ATAT
1 ATAT
25172265 TTCTATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (21 bp):
ATATAAATTATAAATATTTTA
Found at i:25179713 original size:3 final size:3
Alignment explanation
Indices: 25179705--25179765 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
25179695 TATTTCTGAA
25179705 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
25179753 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
25179766 GAGGATGATG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:25180505 original size:19 final size:19
Alignment explanation
Indices: 25180483--25180525 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
25180473 TATTTTTTTA
*
25180483 TTTTTTTTAACTTTTGTCT
1 TTTTTTTTAAATTTTGTCT
* *
25180502 TTTTCTTTAAATTTTTTCT
1 TTTTTTTTAAATTTTGTCT
25180521 TTTTT
1 TTTTT
25180526 AAGTTTTATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.09, G:0.02, T:0.77
Consensus pattern (19 bp):
TTTTTTTTAAATTTTGTCT
Found at i:25180642 original size:21 final size:23
Alignment explanation
Indices: 25180613--25180663 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
25180603 AATGTTTTAT
*
25180613 AATATATATTTTTTAA-AATATTA
1 AATATATA-TTTTTAATAATATAA
25180636 AATATATATTTTTAATAATATAA
1 AATATATATTTTTAATAATATAA
25180659 AATAT
1 AATAT
25180664 TTAAATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
AATATATATTTTTAATAATATAA
Found at i:25180667 original size:39 final size:39
Alignment explanation
Indices: 25180607--25180682 Score: 91
Period size: 39 Copynumber: 1.9 Consensus size: 39
25180597 ATTTGAAATG
* * * *
25180607 TTTTATAATATATATTTTTTAAA-ATATTAAATATATAT
1 TTTTATAATATAAAATATTTAAATATATTAAAGATATAT
*
25180645 TTTTAATAATATAAAATATTTAAATATTTTAAAGATAT
1 TTTT-ATAATATAAAATATTTAAATATATTAAAGATAT
25180683 GACCTTTCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 4 0.13
39 16 0.52
40 11 0.35
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (39 bp):
TTTTATAATATAAAATATTTAAATATATTAAAGATATAT
Found at i:25181132 original size:20 final size:20
Alignment explanation
Indices: 25181106--25181161 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
25181096 ATAAATTTAT
25181106 TTAAAAATATATATTAGAAAG
1 TTAAAAATATATATTA-AAAG
* *
25181127 -TAAAAATTTAAATTAAAAG
1 TTAAAAATATATATTAAAAG
*
25181146 TTAAAAATACATATTA
1 TTAAAAATATATATTA
25181162 TACGATCACA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 4 0.14
20 25 0.86
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (20 bp):
TTAAAAATATATATTAAAAG
Found at i:25181472 original size:20 final size:20
Alignment explanation
Indices: 25181447--25181509 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
25181437 GTTGGTTATA
25181447 ATTTTTTAATTTTAGTACAC
1 ATTTTTTAATTTTAGTACAC
* *
25181467 ATTTTTAAATTTATA-TATTA-
1 ATTTTTTAATTT-TAGTA-CAC
25181487 ATTTTTTAATTTTAGTACAC
1 ATTTTTTAATTTTAGTACAC
25181507 ATT
1 ATT
25181510 CATGAATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
19 3 0.09
20 29 0.83
21 3 0.09
ACGTcount: A:0.33, C:0.06, G:0.03, T:0.57
Consensus pattern (20 bp):
ATTTTTTAATTTTAGTACAC
Found at i:25181518 original size:40 final size:41
Alignment explanation
Indices: 25181445--25181529 Score: 127
Period size: 40 Copynumber: 2.1 Consensus size: 41
25181435 GTGTTGGTTA
**
25181445 TAATTTTTTAATTTTAGTACACATTTTTAAATTTATATA-T
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
* *
25181485 TAATTTTTTAATTTTAGTACACATTCATGAATTTATGTACT
1 TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
25181526 TAAT
1 TAAT
25181530 ATATATTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
40 35 0.88
41 5 0.12
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (41 bp):
TAATTTTTTAATTTTAGTACACATTCATAAATTTATATACT
Found at i:25181540 original size:40 final size:40
Alignment explanation
Indices: 25181453--25181540 Score: 97
Period size: 40 Copynumber: 2.2 Consensus size: 40
25181443 TATAATTTTT
** * *
25181453 TAATTTTAGTACACATTTTTAAATTTATATATTAATTTTT
1 TAATTTTAGTACACATTCATAAATTTATATATTAATTATA
* *
25181493 TAATTTTAGTACACATTCATGAATTTATGTACTTAA-TATA
1 TAATTTTAGTACACATTCATAAATTTATATA-TTAATTATA
*
25181533 TATTTTTA
1 TAATTTTA
25181541 ATAGATAAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 36 0.90
41 4 0.10
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (40 bp):
TAATTTTAGTACACATTCATAAATTTATATATTAATTATA
Found at i:25181676 original size:70 final size:70
Alignment explanation
Indices: 25181589--25181738 Score: 230
Period size: 70 Copynumber: 2.1 Consensus size: 70
25181579 TGTTTAAAAA
* * * *
25181589 TTAAAGAAATTAAATATATTAAAAATGTTATGTATAGCCAATTTTAAAATT-TTAATATATTTAA
1 TTAAA-AAATTAAATATATTAAAAATGTTAAGTATAACCAATATTAAAATTATT-ATATATTCAA
25181653 TATATTT
64 TATATTT
*
25181660 TTTAAAAATTAAATATATTAAAAATGTTAAGTATAACCAATATTAAAATTATTATATATTCAATA
1 TTAAAAAATTAAATATATTAAAAATGTTAAGTATAACCAATATTAAAATTATTATATATTCAATA
25181725 TATTT
66 TATTT
25181730 TTAAAAAAT
1 TTAAAAAAT
25181739 ATATTTTAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
70 66 0.92
71 6 0.08
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.43
Consensus pattern (70 bp):
TTAAAAAATTAAATATATTAAAAATGTTAAGTATAACCAATATTAAAATTATTATATATTCAATA
TATTT
Found at i:25181749 original size:13 final size:15
Alignment explanation
Indices: 25181721--25181749 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
25181711 TTATATATTC
25181721 AATATATTTTTAAAA
1 AATATATTTTTAAAA
25181736 AATATA-TTTTAAAA
1 AATATATTTTTAAAA
25181750 TGTTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATATATTTTTAAAA
Found at i:25183966 original size:30 final size:30
Alignment explanation
Indices: 25183930--25184036 Score: 124
Period size: 30 Copynumber: 3.6 Consensus size: 30
25183920 GTCGCAGAGC
* *
25183930 AGTTCATATCACTCAGACATTGCCGATTCA
1 AGTTCATATCACCCAGACATAGCCGATTCA
* * *
25183960 AGTTCATAACACCCAGACATAGGCGGTTCA
1 AGTTCATATCACCCAGACATAGCCGATTCA
* * * *
25183990 AGTTCATATCACCCAAACATAGGCGGTTCG
1 AGTTCATATCACCCAGACATAGCCGATTCA
*
25184020 AGTTCATTTCACCCAGA
1 AGTTCATATCACCCAGA
25184037 GCAACCACCT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 67 1.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (30 bp):
AGTTCATATCACCCAGACATAGCCGATTCA
Found at i:25194496 original size:28 final size:27
Alignment explanation
Indices: 25194452--25194515 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
25194442 CTGGACTTTG
* * *
25194452 GACATCATTAAAGCATGTAATAAAATTA
1 GACA-CATTAAAACATGCAATAAAATGA
*
25194480 GACACATTAATAACATGCATTAAAATGA
1 GACACATTAA-AACATGCAATAAAATGA
*
25194508 AACACATT
1 GACACATT
25194516 TATCACAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 6 0.20
28 24 0.80
ACGTcount: A:0.50, C:0.14, G:0.09, T:0.27
Consensus pattern (27 bp):
GACACATTAAAACATGCAATAAAATGA
Found at i:25195372 original size:47 final size:48
Alignment explanation
Indices: 25195294--25195394 Score: 159
Period size: 47 Copynumber: 2.1 Consensus size: 48
25195284 AAAATCAGCT
* * *
25195294 GCAGCAAAGACAAGTTTAATGTCTAGATTCGGCTGGACAAATTAAATA
1 GCAGCAAAGACAAGATTAATGACTAAATTCGGCTGGACAAATTAAATA
25195342 GCAGCAAAGAC-AGATTAATGACTAAATTCGGCTGGACAAATTAAATA
1 GCAGCAAAGACAAGATTAATGACTAAATTCGGCTGGACAAATTAAATA
*
25195389 GTAGCA
1 GCAGCA
25195395 GCTAATAAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
47 38 0.78
48 11 0.22
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.23
Consensus pattern (48 bp):
GCAGCAAAGACAAGATTAATGACTAAATTCGGCTGGACAAATTAAATA
Found at i:25195890 original size:29 final size:30
Alignment explanation
Indices: 25195847--25195941 Score: 90
Period size: 29 Copynumber: 3.2 Consensus size: 30
25195837 ATTATTTTGA
*
25195847 AATGCAAATTTAACTAACATGAAAGTTATAT
1 AATGCAAACTTAACTAACATGAAAGTTA-AT
* * *
25195878 AAT-TAAAC-TAACTAGAC-T-TAATTTAAT
1 AATGCAAACTTAACTA-ACATGAAAGTTAAT
*
25195905 GATGCAAACTTAACTAACATGAAAGTTACAT
1 AATGCAAACTTAACTAACATGAAAGTTA-AT
25195936 AATGCA
1 AATGCA
25195942 TGACTTTATT
Statistics
Matches: 49, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
27 4 0.08
28 11 0.22
29 14 0.29
30 10 0.20
31 10 0.20
ACGTcount: A:0.47, C:0.13, G:0.09, T:0.31
Consensus pattern (30 bp):
AATGCAAACTTAACTAACATGAAAGTTAAT
Found at i:25196792 original size:46 final size:46
Alignment explanation
Indices: 25196741--25196834 Score: 161
Period size: 46 Copynumber: 2.0 Consensus size: 46
25196731 ATAGTGTGGC
*
25196741 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTAGGTCGAG
* *
25196787 GTTCATCATATACCAAGGTTCTTATCATTCTTGATAGTAGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTAGGTCGAG
25196833 GT
1 GT
25196835 CTTTTCTTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTAGGTCGAG
Found at i:25207221 original size:4 final size:4
Alignment explanation
Indices: 25207212--25207236 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
25207202 CTTAAGTTCT
25207212 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
25207237 GGACCAAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:25208502 original size:89 final size:89
Alignment explanation
Indices: 25208390--25209513 Score: 1421
Period size: 89 Copynumber: 12.6 Consensus size: 89
25208380 ACGGATTGAA
** * * * * *
25208390 GAAGATAATAGATATTGTCTTCCTGTATTGGCAGTGAAGTAGATTGAAGACACCAGCCTGGCCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
* **
25208455 CCTGAGTTTGCAGTGGAATAGACT
66 CCTGAGTTTGCAGCGGAGCAGACT
* * *
25208479 GAAGATAGCAGATCTTGTCTTCCTGTATTGGTAGCAAAGCAGATCAAAGACACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
* *
25208544 CCTGAGTTTGTAGCAGAGCAGACT
66 CCTGAGTTTGCAGCGGAGCAGACT
* * * *
25208568 GAAGATAGCATATCTTGTCTTCCTATATTGGCAGCGAAGCAGATCGAAGATACCAGCCTTACCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
25208633 CCTGAGTTTGCAGCGGAGCAGACT
66 CCTGAGTTTGCAGCGGAGCAGACT
* * * *
25208657 GAAGGTAACAGATCTTATCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACTAGCCTTGCCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
* *
25208722 CCTGAGTTTGCAGCAGAACAGACT
66 CCTGAGTTTGCAGCGGAGCAGACT
* ** * * *
25208746 GAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGTAAAACAGATCGAAGACACCAACCTGGCCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
* * *
25208811 CTTGAGTTTACAGCGAAGCAGACT
66 CCTGAGTTTGCAGCGGAGCAGACT
* * * * *
25208835 AAAGATAGGAGATCCTGTCTTCCTATATTGGCAGCGAAGTAGATCGAAGACACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
* * *
25208900 CCTAAGTTTGCAGCAGAGCAGATT
66 CCTGAGTTTGCAGCGGAGCAGACT
* * ** *
25208924 GAAGATAGCAGATCTTGTCTTCCTGTATTTGTAGTAAAGCAGATCGAAGACACCAACC-TGCCAT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCC-T
* * *
25208988 CCCTGAGTTTGCAGCAGAGTAAACT
65 CCCTGAGTTTGCAGCGGAGCAGACT
*
25209013 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAACGAAGCAGATCGAAGACACCAGCCTTGCCAT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCC-T
* * *
25209078 -CTTGAGTTTACAGCGGAGCAGATT
65 CCCTGAGTTTGCAGCGGAGCAGACT
* *
25209102 GAAGATAGCAGACCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACATCAGCC-TGACCT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTG-CCT
*
25209166 CCTTGAGTTTGCAGCGGAGCAGACT
65 CCCTGAGTTTGCAGCGGAGCAGACT
*
25209191 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGATACCAGCC-TGACCT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTG-CCT
* *
25209255 CCCTGAGTTTGCAGCGGAGTAGATT
65 CCCTGAGTTTGCAGCGGAGCAGACT
* * * * *
25209280 GAATATAGCAGATCTTGTCTTCTTGTATTGGCATCGAAGTAGATCAAAGACACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
*
25209345 CCTGAGTTTGCAGCGGAGTAGACT
66 CCTGAGTTTGCAGCGGAGCAGACT
* * * * * * *
25209369 AGAA-ACAACAAATCTTGTCTTCCTATTTTGGCAGCGAAGCAGATCGAAGAAACCAGCTTTGCCT
1 -GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * **
25209433 CCCTGAGTTTGTAGCAGAATAGACT
65 CCCTGAGTTTGCAGCGGAGCAGACT
* * * * * *
25209458 GAAAATAGCAGATCTTGTCTTCCTGTACTAGCAGTGAAGTAGATCGAAAACACCAG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAG
25209514 TCCTATCTCC
Statistics
Matches: 893, Mismatches: 135, Indels: 14
0.86 0.13 0.01
Matches are distributed among these distances:
88 10 0.01
89 872 0.98
90 11 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (89 bp):
GAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGCAGATCGAAGACACCAGCCTTGCCTC
CCTGAGTTTGCAGCGGAGCAGACT
Found at i:25208692 original size:45 final size:45
Alignment explanation
Indices: 25208474--25209318 Score: 180
Period size: 45 Copynumber: 19.0 Consensus size: 45
25208464 GCAGTGGAAT
* * * *
25208474 AGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGTAGCAAAGC
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * * * ** * * *
25208519 AGA-TCAAAGACACCAG-CCTTGCCTCCCTG-AGTTTGTAGC-AGAGC
1 AGACT-GAAGATAACAGATCTTATCTTCCTGTA-TTGGCAGCGA-AGC
* * * *
25208563 AGACTGAAGATAGCATATCTTGTCTTCCTATATTGGCAGCGAAGC
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * * * * *
25208608 AGA-TCGAAGATACCAG-CCTTACCTCCCTG-AGTTTGCAGCGGAGC
1 AGACT-GAAGATAACAGATCTTATCTTCCTGTA-TTGGCAGCGAAGC
*
25208652 AGACTGAAGGTAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * ** * *
25208697 AGA-TCGAAGA-CACTAG-CCTTGCCTCCCTG-AGTTTGCAGCAGAA-C
1 AGACT-GAAGATAAC-AGATCTTATCTTCCTGTA-TTGGCAGC-GAAGC
* * * ** *
25208741 AGACTGAAGATAGCAGATCTTGTCTTTCTGTATTGGCAGTAAAAC
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * * ** * **
25208786 AGA-TCGAAGACACCA-A-CCTGGCCTCCT-TGAGTTTACAGCGAAGC
1 AGACT-GAAGATAACAGATCTTATCTTCCTGT-A-TTGGCAGCGAAGC
* ** * * * *
25208830 AGACTAAAGATAGGAGATCCTGTCTTCCTATATTGGCAGCGAAGT
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * * ** *
25208875 AGA-TCGAAGACACCAG-CCTTGCCTCCCTAAGT-TT-GCAGC-AGAGC
1 AGACT-GAAGATAACAGATCTTATCTTCCT--GTATTGGCAGCGA-AGC
* * * * * **
25208919 AGATTGAAGATAGCAGATCTTGTCTTCCTGTATTTGTAGTAAAGC
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * * * * *
25208964 AGA-TCGAAGACACCA-ACCTGCCATC--CCTG-AGTTTGCAGC-AGAGT
1 AGACT-GAAGATAACAGATCT--TATCTTCCTGTA-TTGGCAGCGA-AGC
* * * *
25209008 AAACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAACGAAGC
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * * ** * * ** *
25209053 AGA-TCGAAGACACCAG-CCTTGCCATCTTG-AGTTTACAGCGGAGC
1 AGACT-GAAGATAACAGATCTTATCTTCCTGTA-TTGGCAGCGAAGC
* * * *
25209097 AGATTGAAGATAGCAGACCTTGTCTTCCTGTATTGGCAGCGAAGC
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * * * * * *
25209142 AGA-TCGAAGACATCAG-CCTGA-CCTCCT-TGAGTTTGCAGCGGAGC
1 AGACT-GAAGATAACAGATCTTATCTTCCTGT-A-TTGGCAGCGAAGC
* *
25209186 AGACTGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGC
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
* * * * * * * *
25209231 AGA-TCGAAGATACCAG-CCTGACCTCCCTG-AGTTTGCAGCGGAGT
1 AGACT-GAAGATAACAGATCTTATCTTCCTGTA-TTGGCAGCGAAGC
* * * * * *
25209275 AGATTGAATATAGCAGATCTTGTCTTCTTGTATTGGCATCGAAG
1 AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAG
25209319 TAGATCAAAG
Statistics
Matches: 578, Mismatches: 157, Indels: 130
0.67 0.18 0.15
Matches are distributed among these distances:
42 2 0.00
43 27 0.05
44 259 0.45
45 260 0.45
46 28 0.05
47 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (45 bp):
AGACTGAAGATAACAGATCTTATCTTCCTGTATTGGCAGCGAAGC
Found at i:25209195 original size:44 final size:43
Alignment explanation
Indices: 25208544--25209291 Score: 192
Period size: 45 Copynumber: 16.8 Consensus size: 43
25208534 GCCTTGCCTC
* * * * * *
25208544 CCTGAGTTTGTAGCAGAGCAGACTGAAGATAGCATATCTTGTCTT
1 CCTGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGA-CCTGACCT
* * *
25208589 CCT-A-TATTGGCAGCGAAGCAGATCGAAGATACCAG-CCTTACCT
1 CCTGAGT-TT-GCAGCGGAGCAGAT-GAAGATAGCAGACCTGACCT
* * * * *
25208632 CCCTGAGTTTGCAGCGGAGCAGACTGAAGGTAACAGATCTTATCTT
1 -CCTGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGACCTGA-CCT
* * *
25208678 CCTGTA-TTGGCAGCGAAGCAGATCGAAGACA-CTAG-CCTTG-CCT
1 CCTG-AGTTTGCAGCGGAGCAGAT-GAAGATAGC-AGACC-TGACCT
* * * * *
25208721 CCCTGAGTTTGCAGCAGAACAGACTGAAGATAGCAGATCTTGTCTT
1 -CCTGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGA-CCTGACCT
* * *** * * * *
25208767 TCTGTA-TTGGCAGTAAAACAGATCGAAGACACCA-ACCTGGCCT
1 CCTG-AGTTTGCAGCGGAGCAGAT-GAAGATAGCAGACCTGACCT
* * * * * *
25208810 CCTTGAGTTTACAGCGAAGCAGACTAAAGATAGGAGATCCTGTCTT
1 CC-TGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGA-CCTGACCT
* * * *
25208856 CCT-A-TATTGGCAGCGAAGTAGATCGAAGACACCAG-CCTTG-CCT
1 CCTGAGT-TT-GCAGCGGAGCAGAT-GAAGATAGCAGACC-TGACCT
* * * * *
25208899 CCCTAAGTTTGCAGCAGAGCAGATTGAAGATAGCAGATCTTGTCTT
1 -CCTGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGA-CCTGACCT
* *** * *
25208945 CCTGTA-TTTGTAGTAAAGCAGATCGAAGACACCA-ACCTG-CCAT
1 CCTG-AGTTTGCAGCGGAGCAGAT-GAAGATAGCAGACCTGACC-T
* * * * * *
25208988 CCCTGAGTTTGCAGCAGAGTAAACTGAAGATAGCAGATCTTGTCTT
1 -CCTGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGA-CCTGACCT
* * * * *
25209034 CCTGTA-TTGGCAACGAAGCAGATCGAAGACACCAG-CCTTG-CCAT
1 CCTG-AGTTTGCAGCGGAGCAGAT-GAAGATAGCAGACC-TGACC-T
* * * *
25209078 CTTGAGTTTACAGCGGAGCAGATTGAAGATAGCAGACCTTGTCTT
1 CCTGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGACC-TGACCT
* * * *
25209123 CCTGTA-TTGGCAGCGAAGCAGATCGAAGACATCAG-CCTGACCT
1 CCTG-AGTTTGCAGCGGAGCAGAT-GAAGATAGCAGACCTGACCT
* * *
25209166 CCTTGAGTTTGCAGCGGAGCAGACTGAAGATAGCAGATCTTGTCTT
1 CC-TGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGA-CCTGACCT
* * *
25209212 CCTGTA-TTGGCAGCGAAGCAGATCGAAGATACCAG-CCTGACCT
1 CCTG-AGTTTGCAGCGGAGCAGAT-GAAGATAGCAGACCTGACCT
* *
25209255 CCCTGAGTTTGCAGCGGAGTAGATTGAATATAGCAGA
1 -CCTGAGTTTGCAGCGGAGCAGA-TGAAGATAGCAGA
25209292 TCTTGTCTTC
Statistics
Matches: 511, Mismatches: 124, Indels: 136
0.66 0.16 0.18
Matches are distributed among these distances:
42 1 0.00
43 41 0.08
44 212 0.41
45 220 0.43
46 36 0.07
47 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.24
Consensus pattern (43 bp):
CCTGAGTTTGCAGCGGAGCAGATGAAGATAGCAGACCTGACCT
Found at i:25209770 original size:51 final size:51
Alignment explanation
Indices: 25209704--25209978 Score: 191
Period size: 51 Copynumber: 5.6 Consensus size: 51
25209694 AGTGGAGCGA
*
25209704 ATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTGTAGTGGAACAG
1 ATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTGCAGTGGAACAG
* * * * * *
25209755 ATTAAAGCTGAAGGCAGCGAATCTTAT-T--TT-CCCTGGC-GTCGCACAG
1 ATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTGCAGTGGAACAG
* * * * * *
25209801 ATTAAAGCTGAAGGCAGCGAAT-CTCATTTTCTTGGCGTTGCAATAGAGCAG
1 ATTAAAGCTGAAGGCAGCGAATCCT-ATCTCCTTGGCATTGCAGTGGAACAG
* * * ** * * *
25209852 ATTAAAGTTGAAGGCAACAAATGTTATCTCCCTGGCGTCGCAGT-----AG
1 ATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTGCAGTGGAACAG
* * * *
25209898 ATTAAAGCTGAAGGCAGC-AAGT-CTCAT-TTCTTAGCATTACAGTGGAGCAG
1 ATTAAAGCTGAAGGCAGCGAA-TCCT-ATCTCCTTGGCATTGCAGTGGAACAG
*
25209948 ATTAAAGCTGAAGGCAGCGAATCTTATCTCC
1 ATTAAAGCTGAAGGCAGCGAATCCTATCTCC
25209979 CTACCAGTCT
Statistics
Matches: 172, Mismatches: 35, Indels: 34
0.71 0.15 0.14
Matches are distributed among these distances:
45 14 0.08
46 52 0.30
47 4 0.02
48 2 0.01
49 2 0.01
50 28 0.16
51 69 0.40
52 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (51 bp):
ATTAAAGCTGAAGGCAGCGAATCCTATCTCCTTGGCATTGCAGTGGAACAG
Found at i:25209818 original size:46 final size:47
Alignment explanation
Indices: 25209752--25209974 Score: 186
Period size: 46 Copynumber: 4.6 Consensus size: 47
25209742 TGTAGTGGAA
25209752 CAGATTAAAGCTGAAGGCAGCGAATCTTATTTTCCCTGGCGTCGCA-
1 CAGATTAAAGCTGAAGGCAGCGAATCTTATTTTCCCTGGCGTCGCAG
* * *
25209798 CAGATTAAAGCTGAAGGCAGCGAATCTCATTTT-CTTGGCGTTGCAATAGAG
1 CAGATTAAAGCTGAAGGCAGCGAATCTTATTTTCCCTGGCGTCGC-----AG
* * * * *
25209849 CAGATTAAAGTTGAAGGCAACAAATGTTA-TCTCCCTGGCGTCGCAG
1 CAGATTAAAGCTGAAGGCAGCGAATCTTATTTTCCCTGGCGTCGCAG
* * * * ** *
25209895 TAGATTAAAGCTGAAGGCAGC-AAGTCTCATTTCTTAGCATTACAGT-GGAG
1 CAGATTAAAGCTGAAGGCAGCGAA-TCTTA-TT-TT-CCCTGGC-GTCGCAG
25209945 CAGATTAAAGCTGAAGGCAGCGAATCTTAT
1 CAGATTAAAGCTGAAGGCAGCGAATCTTAT
25209975 CTCCCTACCA
Statistics
Matches: 139, Mismatches: 24, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
45 11 0.08
46 55 0.40
48 1 0.01
49 2 0.01
50 33 0.24
51 37 0.27
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.26
Consensus pattern (47 bp):
CAGATTAAAGCTGAAGGCAGCGAATCTTATTTTCCCTGGCGTCGCAG
Found at i:25209900 original size:97 final size:96
Alignment explanation
Indices: 25209704--25209980 Score: 362
Period size: 97 Copynumber: 2.9 Consensus size: 96
25209694 AGTGGAGCGA
* * * *
25209704 ATTAAAGCTGAAGGCAGCGAATC-CTATCTCCTTGGCATTGTAGTGGAACAGATTAAAGCTGAAG
1 ATTAAAGCTGAAGGCAGCGAATCTC-ATTTTCTTGGCATTGCAGTGGAGCAGATTAAAGCTGAAG
*
25209768 GCAGCGAATCTTATTTTCCCTGGCGTCGCACAG
65 GCAGCGAATCTTA-TCTCCCTGGCGTCGCACAG
* * * *
25209801 ATTAAAGCTGAAGGCAGCGAATCTCATTTTCTTGGCGTTGCAATAGAGCAGATTAAAGTTGAAGG
1 ATTAAAGCTGAAGGCAGCGAATCTCATTTTCTTGGCATTGCAGTGGAGCAGATTAAAGCTGAAGG
* * * *
25209866 CAACAAATGTTATCTCCCTGGCGTCGCAGTAG
66 CAGCGAATCTTATCTCCCTGGCGTCGCA-CAG
* *
25209898 ATTAAAGCTGAAGGCAGC-AAGTCTCA-TTTCTTAGCATTACAGTGGAGCAGATTAAAGCTGAAG
1 ATTAAAGCTGAAGGCAGCGAA-TCTCATTTTCTTGGCATTGCAGTGGAGCAGATTAAAGCTGAAG
25209961 GCAGCGAATCTTATCTCCCT
65 GCAGCGAATCTTATCTCCCT
25209981 ACCAGTCTTA
Statistics
Matches: 155, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
96 65 0.42
97 89 0.57
98 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (96 bp):
ATTAAAGCTGAAGGCAGCGAATCTCATTTTCTTGGCATTGCAGTGGAGCAGATTAAAGCTGAAGG
CAGCGAATCTTATCTCCCTGGCGTCGCACAG
Found at i:25211673 original size:30 final size:30
Alignment explanation
Indices: 25211639--25211712 Score: 112
Period size: 30 Copynumber: 2.5 Consensus size: 30
25211629 ACAGCCAAAG
*
25211639 CCATCCCTTTTCATAATTTGATGGTCATCA
1 CCATCCCTTTTCATAAGTTGATGGTCATCA
* *
25211669 CCATCCCTTCTCATAAGTTGATGGTCGTCA
1 CCATCCCTTTTCATAAGTTGATGGTCATCA
*
25211699 CCATCTCTTTTCAT
1 CCATCCCTTTTCAT
25211713 TGATCAATAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.20, C:0.30, G:0.11, T:0.39
Consensus pattern (30 bp):
CCATCCCTTTTCATAAGTTGATGGTCATCA
Found at i:25211675 original size:60 final size:58
Alignment explanation
Indices: 25211611--25211831 Score: 167
Period size: 60 Copynumber: 3.7 Consensus size: 58
25211601 AATCGAAGTT
*
25211611 ATCCCTTTTCATAGTTCGACAGCCAAAGCCATCCCTTTTCATAATTTGATGGTCATCACC
1 ATCCCTTTTCATAGTT-GATAGCCAAAGCCATCCCTTTTCATAATTTGATGG-CATCACC
* * *** * * ** * * *
25211671 ATCCCTTCTCATAAGTTGATGGTCGTCA-CCATCTCTTTTCATTGA-TCAATAGCCTAAGCC
1 ATCCCTTTTCAT-AGTTGATAG-CCAAAGCCATCCCTTTTCA-TAATTTGATGGCATCA-CC
* * ** *
25211731 ATCCCTTTTCATAGTACGATAACTGAAGCCATCCCTTTTCATAATTTGATGGGCGTCACC
1 ATCCCTTTTCATAGT-TGATAGCCAAAGCCATCCCTTTTCATAATTTGAT-GGCATCACC
* * *
25211791 ATCCCTTTTCACAATTGATAGCCAAAGCTATCCCTTTTCAT
1 ATCCCTTTTCATAGTTGATAGCCAAAGCCATCCCTTTTCAT
25211832 TTGTCGATAT
Statistics
Matches: 119, Mismatches: 34, Indels: 17
0.70 0.20 0.10
Matches are distributed among these distances:
59 31 0.26
60 76 0.64
61 12 0.10
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (58 bp):
ATCCCTTTTCATAGTTGATAGCCAAAGCCATCCCTTTTCATAATTTGATGGCATCACC
Found at i:25215512 original size:56 final size:56
Alignment explanation
Indices: 25215423--25215598 Score: 325
Period size: 56 Copynumber: 3.1 Consensus size: 56
25215413 ACAAGGGATG
*
25215423 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
* *
25215479 ATTGGCAAAACATGTCATGAAACATGTTGTGTTAATAGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
25215535 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
25215591 ATGGGCAA
1 ATGGGCAA
25215599 TAAACTAATA
Statistics
Matches: 115, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 115 1.00
ACGTcount: A:0.45, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:25216961 original size:40 final size:40
Alignment explanation
Indices: 25216723--25216947 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
25216713 TCGAATGATG
* * * *
25216723 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
25216763 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
25216803 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
25216842 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
25216882 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
25216923 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25216948 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:25216969 original size:119 final size:119
Alignment explanation
Indices: 25216723--25216980 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
25216713 TCGAATGATG
* *
25216723 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
25216788 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
25216842 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
25216905 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
25216962 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
25216981 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:25223580 original size:54 final size:56
Alignment explanation
Indices: 25223413--25223582 Score: 317
Period size: 56 Copynumber: 3.1 Consensus size: 56
25223403 ACAAGGGATG
*
25223413 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
25223469 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
25223525 ATGGGCAAAACATGTCATGAAACAT-TT-TGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
25223579 ATGG
1 ATGG
25223583 CAATAAACTA
Statistics
Matches: 113, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
54 31 0.27
55 2 0.02
56 80 0.71
ACGTcount: A:0.45, C:0.09, G:0.22, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:25224844 original size:79 final size:80
Alignment explanation
Indices: 25224708--25224931 Score: 278
Period size: 79 Copynumber: 2.8 Consensus size: 80
25224698 TCGAATGATG
* * * * *
25224708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*
25224771 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
25224788 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
25224852 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
25224867 TCC-GGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
25224930 TG
65 TG
25224932 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 7 0.06
79 100 0.79
80 19 0.15
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:25224938 original size:40 final size:40
Alignment explanation
Indices: 25224708--25224931 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
25224698 TCGAATGATG
* * * *
25224708 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
25224748 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
25224788 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
25224827 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
25224867 TCC-GGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
25224907 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
25224932 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
39 69 0.43
40 85 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:25224938 original size:79 final size:78
Alignment explanation
Indices: 25224747--25224964 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 78
25224737 AAGTGACCAT
* * *
25224747 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAATCC-GGTTAAGTCCCGAAGGCAT
*
25224810 TGGTGCGAGTTACTAA
63 TGGTACGAGTTACTAA
* *
25224826 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAGTCCCGAAGGCATTT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAATCCGGTTAAGTCCCGAAGGCATTG
25224891 GTACGAGTTACTATA
65 GTACGAGTTACTA-A
* ** * * *
25224906 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CTAAATCCGGTTAAGTCCCGAAGG
25224965 TACGTGATTT
Statistics
Matches: 121, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
78 9 0.07
79 110 0.91
80 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAATCCGGTTAAGTCCCGAAGGCATTGG
TACGAGTTACTAA
Found at i:25237080 original size:45 final size:45
Alignment explanation
Indices: 25236817--25237058 Score: 394
Period size: 45 Copynumber: 5.4 Consensus size: 45
25236807 AAGAGGTGGA
** * * *
25236817 CAACATCATGCATAATTTGTGGAACAAATTAAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
25236862 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
25236907 CAACATCATGCATAATTCATGGAAGACTTTGAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
*
25236952 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCGTTTGAC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
* *
25236997 CAACATCATGCATAATTCATGGAAGAATTTAAGGAAGCATTTGGC
1 CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
25237042 CAACATCATGCATAATT
1 CAACATCATGCATAATT
25237059 TAAAGAACAA
Statistics
Matches: 184, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 184 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (45 bp):
CAACATCATGCATAATTCATGGAAGAATTTGAGGAAGCATTTGAC
Found at i:25239884 original size:36 final size:37
Alignment explanation
Indices: 25239844--25239926 Score: 86
Period size: 36 Copynumber: 2.3 Consensus size: 37
25239834 AAAATGTGAG
**
25239844 AAAGAAGAGAAAATTGAAAAA-AA-AAA-TGAGTTAGAA
1 AAAGAAGAGAAAA--GAAAAAGAAGAAAGTGAGAAAGAA
*
25239880 AAAGAA-ACAAAAGAAAAAGAAGAAAGTGAGAAAGAA
1 AAAGAAGAGAAAAGAAAAAGAAGAAAGTGAGAAAGAA
25239916 AAAG-AGAGAAA
1 AAAGAAGAGAAA
25239927 TGTTTTCACT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
33 6 0.15
34 2 0.05
35 9 0.23
36 22 0.56
ACGTcount: A:0.70, C:0.01, G:0.22, T:0.07
Consensus pattern (37 bp):
AAAGAAGAGAAAAGAAAAAGAAGAAAGTGAGAAAGAA
Found at i:25241007 original size:24 final size:24
Alignment explanation
Indices: 25240954--25241008 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
25240944 ATATGACTAA
25240954 ATATTTACAAATATATATACAAGT
1 ATATTTACAAATATATATACAAGT
* * * *
25240978 AAATTTGCAAATATGTGTACACA-T
1 ATATTTACAAATATATATACA-AGT
25241002 ATATTTA
1 ATATTTA
25241009 ACACGCATAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.38
Consensus pattern (24 bp):
ATATTTACAAATATATATACAAGT
Found at i:25242839 original size:7 final size:7
Alignment explanation
Indices: 25242818--25242888 Score: 53
Period size: 7 Copynumber: 10.3 Consensus size: 7
25242808 TTTGAACTAT
*
25242818 TTTACTA
1 TTTATTA
25242825 TTTAATTA
1 TTT-ATTA
25242833 TTTATTA
1 TTTATTA
25242840 TTTATTA
1 TTTATTA
25242847 --TATTA
1 TTTATTA
25242852 TATTATTA
1 T-TTATTA
25242860 CTTGT-TTA
1 -TT-TATTA
25242868 -TTATTA
1 TTTATTA
*
25242874 TCTATTA
1 TTTATTA
25242881 -TTATTA
1 TTTATTA
25242887 TT
1 TT
25242889 AATATTGTAA
Statistics
Matches: 52, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
5 6 0.12
6 9 0.17
7 20 0.38
8 15 0.29
9 2 0.04
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (7 bp):
TTTATTA
Found at i:25242856 original size:24 final size:26
Alignment explanation
Indices: 25242829--25242889 Score: 74
Period size: 24 Copynumber: 2.4 Consensus size: 26
25242819 TTACTATTTA
25242829 ATTATTTATTATTTATTA-TAT-TA-T
1 ATTA-TTATTATTTATTATTATCTATT
*
25242853 ATTATTACTTGTTTATTATTATCTATT
1 ATTATTA-TTATTTATTATTATCTATT
25242880 ATTATTATTA
1 ATTATTATTA
25242890 ATATTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 3 0.10
24 13 0.42
25 3 0.10
26 4 0.13
27 8 0.26
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (26 bp):
ATTATTATTATTTATTATTATCTATT
Found at i:25242906 original size:3 final size:3
Alignment explanation
Indices: 25242829--25242894 Score: 55
Period size: 3 Copynumber: 21.0 Consensus size: 3
25242819 TTACTATTTA
*
25242829 ATT ATTT ATT ATTT ATT A-T ATT A-T ATT ATT ACTT GTTT ATT ATT ATCT
1 ATT A-TT ATT A-TT ATT ATT ATT ATT ATT ATT A-TT -ATT ATT ATT AT-T
*
25242877 ATT ATT ATT ATT AAT ATT
1 ATT ATT ATT ATT ATT ATT
25242895 GTAACTATTA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
2 4 0.08
3 35 0.67
4 13 0.25
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:25245392 original size:25 final size:25
Alignment explanation
Indices: 25245338--25245429 Score: 76
Period size: 25 Copynumber: 3.7 Consensus size: 25
25245328 TCCTGTACAT
* *
25245338 GTATGTTCACACGAGCTATGAATCG
1 GTATGCTCACACGAGCTATAAATCG
* * *
25245363 ATATGCTCATACGAGCTATAAATTG
1 GTATGCTCACACGAGCTATAAATCG
* * * * *
25245388 GTATGCCCTCATGAGTTGTAAATCG
1 GTATGCTCACACGAGCTATAAATCG
* *
25245413 GTATGCTCTCACAAGCT
1 GTATGCTCACACGAGCT
25245430 GTGGGTCAGA
Statistics
Matches: 50, Mismatches: 17, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (25 bp):
GTATGCTCACACGAGCTATAAATCG
Found at i:25248649 original size:23 final size:22
Alignment explanation
Indices: 25248606--25248649 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
25248596 TTCTAAGTCG
25248606 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
25248629 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
25248650 TAAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:25248767 original size:45 final size:45
Alignment explanation
Indices: 25248697--25248782 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
25248687 AGATACTCGA
* * *
25248697 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCAG
1 TGGAATCAGCACATAGCAACAACCTTACTAATCAATGATGTCCAG
25248742 TGGAATCAGCACATAGCAACAACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAACAACCTTACTAATCAATGATGT
25248783 TCGGTTCACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACAACCTTACTAATCAATGATGTCCAG
Found at i:25248847 original size:51 final size:52
Alignment explanation
Indices: 25248789--25248927 Score: 162
Period size: 51 Copynumber: 2.7 Consensus size: 52
25248779 ATGTTCGGTT
*
25248789 CACATAGTAACCTGCACATAGTACTACACATGTGACCATTACCATCT-G-ATG
1 CACATAGTAACCTGCACATAGTACTACACATGTGACCA-AACCATCTGGTATG
* * *
25248840 CACATAGTAGA-CTGCACATAGTACTACACACGTGATCGAAACTATCTGGTATG
1 CACATAGTA-ACCTGCACATAGTACTACACATGTGA-CCAAACCATCTGGTATG
* *
25248893 --CATAGTAGCCTGCACATAGTACTACACATGCGACC
1 CACATAGTAACCTGCACATAGTACTACACATGTGACC
25248928 TATCATTCCG
Statistics
Matches: 75, Mismatches: 8, Indels: 11
0.80 0.09 0.12
Matches are distributed among these distances:
50 1 0.01
51 67 0.89
52 4 0.05
53 3 0.04
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.24
Consensus pattern (52 bp):
CACATAGTAACCTGCACATAGTACTACACATGTGACCAAACCATCTGGTATG
Found at i:25254285 original size:28 final size:28
Alignment explanation
Indices: 25254254--25254404 Score: 221
Period size: 28 Copynumber: 5.4 Consensus size: 28
25254244 TCAGAGATCA
* * * *
25254254 CCACAGAGGCTGTTCTTTTCATACTTCG
1 CCACAAAGGCTATTCTTTTCATATTTTG
25254282 CCACAAAGGCTATTCTTTTCATATTTTG
1 CCACAAAGGCTATTCTTTTCATATTTTG
25254310 CCACAAAGGCTATTCTTTTCATATTTTG
1 CCACAAAGGCTATTCTTTTCATATTTTG
*
25254338 CCACAAAGGCTATTCTTTTCATATTTTA
1 CCACAAAGGCTATTCTTTTCATATTTTG
* * * *
25254366 CCATAAAGGCTATTATTTTCATACTTCG
1 CCACAAAGGCTATTCTTTTCATATTTTG
25254394 CCACAAAGGCT
1 CCACAAAGGCT
25254405 TTCATATTAT
Statistics
Matches: 112, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 112 1.00
ACGTcount: A:0.26, C:0.24, G:0.12, T:0.38
Consensus pattern (28 bp):
CCACAAAGGCTATTCTTTTCATATTTTG
Found at i:25254314 original size:56 final size:56
Alignment explanation
Indices: 25254253--25254466 Score: 244
Period size: 56 Copynumber: 3.9 Consensus size: 56
25254243 TTCAGAGATC
* *
25254253 ACCACAGAGGCTGTTCTTTTCATACTTCGCCACAAAGGCTATTCTTTTCATATTTT
1 ACCACAAAGGCTATTCTTTTCATACTTCGCCACAAAGGCTATTCTTTTCATATTTT
* * *
25254309 GCCACAAAGGCTATTCTTTTCATATTTTGCCACAAAGGCTATTCTTTTCATATTTT
1 ACCACAAAGGCTATTCTTTTCATACTTCGCCACAAAGGCTATTCTTTTCATATTTT
* * * *
25254365 ACCATAAAGGCTATTATTTTCATACTTCGCCACAAAGGCT-TTCATATT-ATGA-TTC
1 ACCACAAAGGCTATTCTTTTCATACTTCGCCACAAAGGCTATTC-TTTTCAT-ATTTT
* *
25254420 ATCACAAA-GC-ATTCATTTCATGA-TTCGCCACAAAGGCT-TTCATTTTC
1 ACCACAAAGGCTATTCTTTTCAT-ACTTCGCCACAAAGGCTATTC-TTTTC
25254467 TAACATTTTT
Statistics
Matches: 137, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
53 31 0.23
54 3 0.02
55 13 0.09
56 90 0.66
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.38
Consensus pattern (56 bp):
ACCACAAAGGCTATTCTTTTCATACTTCGCCACAAAGGCTATTCTTTTCATATTTT
Found at i:25254428 original size:27 final size:27
Alignment explanation
Indices: 25254251--25254464 Score: 120
Period size: 28 Copynumber: 7.8 Consensus size: 27
25254241 TTTTCAGAGA
* *
25254251 TCACCACAGAGGCTGTTCTTTTCAT-ACT
1 TCACCACAAAGGCT-TTCATTTCATGA-T
* *
25254279 TCGCCACAAAGGCTATTCTTTTCAT-ATT
1 TCACCACAAAGGCT-TTCATTTCATGA-T
** *
25254307 TTGCCACAAAGGCTATTCTTTTCAT-ATT
1 TCACCACAAAGGCT-TTCATTTCATGA-T
** *
25254335 TTGCCACAAAGGCTATTCTTTTCAT-ATT
1 TCACCACAAAGGCT-TTCATTTCATGA-T
* *
25254363 TTACCATAAAGGCTATT-ATTTTCAT-ACT
1 TCACCACAAAGGCT-TTCA-TTTCATGA-T
*
25254391 TCGCCACAAAGGCTTTCATATT-ATGAT
1 TCACCACAAAGGCTTTCAT-TTCATGAT
* *
25254418 TCATCACAAA-GCATTCATTTCATGAT
1 TCACCACAAAGGCTTTCATTTCATGAT
*
25254444 TCGCCACAAAGGCTTTCATTT
1 TCACCACAAAGGCTTTCATTT
25254465 TCTAACATTT
Statistics
Matches: 162, Mismatches: 18, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
25 2 0.01
26 20 0.12
27 23 0.14
28 117 0.72
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.38
Consensus pattern (27 bp):
TCACCACAAAGGCTTTCATTTCATGAT
Found at i:25254442 original size:26 final size:26
Alignment explanation
Indices: 25254394--25254464 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
25254384 TCATACTTCG
25254394 CCACAAAGGCTTTCATATTATGATTCA
1 CCACAAAGGCTTTCAT-TTATGATTCA
* * *
25254421 TCACAAA-GCATTCATTTCATGATTCG
1 CCACAAAGGCTTTCATTT-ATGATTCA
25254447 CCACAAAGGCTTTCATTT
1 CCACAAAGGCTTTCATTT
25254465 TCTAACATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 2 0.05
26 20 0.54
27 15 0.41
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (26 bp):
CCACAAAGGCTTTCATTTATGATTCA
Found at i:25261233 original size:27 final size:27
Alignment explanation
Indices: 25261176--25261254 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
25261166 CCATGCTCAT
* **
25261176 AGATGTGGTTTGGAGAACTATGTTCGT
1 AGATGTGTTTTGGAGAACTATGTTCAC
* *
25261203 AGATGTGTTTTGGAGAACTATTTTTAC
1 AGATGTGTTTTGGAGAACTATGTTCAC
* * * *
25261230 AGATATGTTTTAGCGAACTAAGTTC
1 AGATGTGTTTTGGAGAACTATGTTC
25261255 GTAAATGTTG
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (27 bp):
AGATGTGTTTTGGAGAACTATGTTCAC
Found at i:25267674 original size:20 final size:19
Alignment explanation
Indices: 25267645--25267682 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
25267635 ATAACAGCTA
25267645 TTGGCTTTAATTCAACTTG
1 TTGGCTTTAATTCAACTTG
25267664 TTGGCCTTTAATTCAACTT
1 TTGG-CTTTAATTCAACTT
25267683 CATAACAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.21, C:0.18, G:0.13, T:0.47
Consensus pattern (19 bp):
TTGGCTTTAATTCAACTTG
Found at i:25267904 original size:19 final size:19
Alignment explanation
Indices: 25267880--25267971 Score: 70
Period size: 19 Copynumber: 5.1 Consensus size: 19
25267870 TGATTTAAGC
25267880 AACTTAATTAACTAACATG
1 AACTTAATTAACTAACATG
*
25267899 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAACATG
* *
25267918 -A-TTAATTTA-T-TC-TAG
1 AACTTAATTAACTAACAT-G
*
25267933 TAACTT-ATTAACTAAGATG
1 -AACTTAATTAACTAACATG
* *
25267952 AACTCAATTAACTAATATG
1 AACTTAATTAACTAACATG
25267971 A
1 A
25267972 GTAATTTATT
Statistics
Matches: 56, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
14 1 0.02
15 1 0.02
16 1 0.02
17 12 0.21
18 8 0.14
19 32 0.57
20 1 0.02
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.36
Consensus pattern (19 bp):
AACTTAATTAACTAACATG
Found at i:25267947 original size:53 final size:54
Alignment explanation
Indices: 25267880--25267982 Score: 163
Period size: 53 Copynumber: 1.9 Consensus size: 54
25267870 TGATTTAAGC
* *
25267880 AACTTAATTAACTAACATGAACTTAATTAACTAAGATGATTAATTTATTCTAGT
1 AACTTAATTAACTAACATGAACTCAATTAACTAAGATGAGTAATTTATTCTAGT
* *
25267934 AACTT-ATTAACTAAGATGAACTCAATTAACTAATATGAGTAATTTATTC
1 AACTTAATTAACTAACATGAACTCAATTAACTAAGATGAGTAATTTATTC
25267983 CAGCAACTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 40 0.89
54 5 0.11
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.38
Consensus pattern (54 bp):
AACTTAATTAACTAACATGAACTCAATTAACTAAGATGAGTAATTTATTCTAGT
Found at i:25268015 original size:20 final size:20
Alignment explanation
Indices: 25267977--25268016 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
25267967 TATGAGTAAT
*
25267977 TTATTCCAGCAACTAAAAAC
1 TTATTCCAGCAAATAAAAAC
*
25267997 TTATTCTAGCAAATTAAAAA
1 TTATTCCAGCAAA-TAAAAA
25268017 TGGGTTGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.47, C:0.17, G:0.05, T:0.30
Consensus pattern (20 bp):
TTATTCCAGCAAATAAAAAC
Found at i:25274422 original size:14 final size:14
Alignment explanation
Indices: 25274403--25274433 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
25274393 AATCAACCTT
25274403 CACCTCCACCAATC
1 CACCTCCACCAATC
*
25274417 CACCTCCACCGATC
1 CACCTCCACCAATC
25274431 CAC
1 CAC
25274434 TTCCGGTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.58, G:0.03, T:0.13
Consensus pattern (14 bp):
CACCTCCACCAATC
Found at i:25276385 original size:21 final size:21
Alignment explanation
Indices: 25276359--25276421 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
25276349 TTGGTATTTG
25276359 GGAATTGGTACGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
*
25276380 GGAATTGGTATGAAATGGTAT
1 GGAATTGGTACGAAATGGTAT
* *
25276401 GGTATTTGGTACGAATTGGTA
1 GG-AATTGGTACGAAATGGTA
25276422 ATGGTTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 22 0.59
22 15 0.41
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (21 bp):
GGAATTGGTACGAAATGGTAT
Found at i:25277510 original size:10 final size:10
Alignment explanation
Indices: 25277495--25277536 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
25277485 TTTGCAAGTT
25277495 TTGAGCTAAA
1 TTGAGCTAAA
* *
25277505 TTGAGCTGAT
1 TTGAGCTAAA
*
25277515 TTGAGCT-CA
1 TTGAGCTAAA
25277524 TTGAGCTAAA
1 TTGAGCTAAA
25277534 TTG
1 TTG
25277537 GAAGTTAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.36
Consensus pattern (10 bp):
TTGAGCTAAA
Found at i:25282188 original size:21 final size:21
Alignment explanation
Indices: 25282162--25282203 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
25282152 AGAAGTTGCG
* *
25282162 AATCTGTATGCCAAATGAAAC
1 AATCTGTATACCAAACGAAAC
*
25282183 AATCTGTCTACCAAACGAAAC
1 AATCTGTATACCAAACGAAAC
25282204 TATCCACTAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.24, G:0.12, T:0.21
Consensus pattern (21 bp):
AATCTGTATACCAAACGAAAC
Found at i:25284911 original size:15 final size:15
Alignment explanation
Indices: 25284891--25284920 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25284881 AATTATTTTT
*
25284891 AATATATTTTTTATA
1 AATATATTTATTATA
25284906 AATATATTTATTATA
1 AATATATTTATTATA
25284921 CTATTTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
AATATATTTATTATA
Found at i:25291069 original size:11 final size:11
Alignment explanation
Indices: 25291053--25291114 Score: 70
Period size: 11 Copynumber: 5.5 Consensus size: 11
25291043 TCCTCTCTAA
25291053 AATTTCCTCTC
1 AATTTCCTCTC
*
25291064 AATTTCCTCTA
1 AATTTCCTCTC
*
25291075 AATTTTCTCTC
1 AATTTCCTCTC
*
25291086 AATTTGCTCTC
1 AATTTCCTCTC
* *
25291097 AAATTCCTTCTA
1 AATTTCC-TCTC
25291109 AATTTC
1 AATTTC
25291115 TCTGAAATCC
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
11 34 0.81
12 8 0.19
ACGTcount: A:0.24, C:0.27, G:0.02, T:0.47
Consensus pattern (11 bp):
AATTTCCTCTC
Found at i:25291084 original size:22 final size:23
Alignment explanation
Indices: 25291047--25291122 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 23
25291037 AACTAATCCT
25291047 CTCTAAAATTTCCTCTCAATTTC
1 CTCTAAAATTTCCTCTCAATTTC
* *
25291070 CTCT-AAATTTTCTCTCAATTTG
1 CTCTAAAATTTCCTCTCAATTTC
* *
25291092 CTCTCAAA-TTCCTTCTAAATTT-
1 CTCTAAAATTTCC-TCTCAATTTC
*
25291114 CTCTGAAAT
1 CTCTAAAAT
25291123 CCATATTTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
22 30 0.67
23 15 0.33
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (23 bp):
CTCTAAAATTTCCTCTCAATTTC
Found at i:25291090 original size:33 final size:33
Alignment explanation
Indices: 25291053--25291117 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
25291043 TCCTCTCTAA
*
25291053 AATTTCCTCTCAATTTCC-TCTAAATTTTCTCTC
1 AATTTCCTCTCAAATTCCTTCTAAA-TTTCTCTC
*
25291086 AATTTGCTCTCAAATTCCTTCTAAATTTCTCT
1 AATTTCCTCTCAAATTCCTTCTAAATTTCTCT
25291118 GAAATCCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 23 0.79
34 6 0.21
ACGTcount: A:0.23, C:0.28, G:0.02, T:0.48
Consensus pattern (33 bp):
AATTTCCTCTCAAATTCCTTCTAAATTTCTCTC
Found at i:25291122 original size:11 final size:10
Alignment explanation
Indices: 25291046--25291122 Score: 55
Period size: 11 Copynumber: 6.9 Consensus size: 10
25291036 AAACTAATCC
25291046 TCTCTAAAATT
1 TCTCT-AAATT
*
25291057 TCCTCTCAATT
1 T-CTCTAAATT
25291068 TCCTCTAAATTT
1 T-CTCTAAA-TT
*
25291080 TCTCTCAATT
1 TCTCTAAATT
25291090 TGCTCTCAAATT
1 T-CTCT-AAATT
*
25291102 CCTTCTAAATT
1 TC-TCTAAATT
25291113 TCTCTGAAAT
1 TCTCT-AAAT
25291123 CCATATTTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
10 6 0.11
11 34 0.63
12 14 0.26
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.45
Consensus pattern (10 bp):
TCTCTAAATT
Found at i:25293018 original size:18 final size:18
Alignment explanation
Indices: 25292991--25293030 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
25292981 CAGGTGCGTT
* *
25292991 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
25293009 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
25293027 TCCT
1 TCCT
25293031 TTTTCGAGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:25294746 original size:126 final size:125
Alignment explanation
Indices: 25294324--25295016 Score: 1052
Period size: 126 Copynumber: 5.5 Consensus size: 125
25294314 CTCAAACATG
* *
25294324 CTACTGTAGTAAAAGCGCGTTCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
25294389 TAGAAGCG-TTTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * *
25294448 CTACTGTAGCAAAAGCACGTCCACGAGGGTGCGATTTCACAAATTCTTCTCAAATAGCATCCTTC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
25294513 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTTTACAGGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * * *
25294573 CTACTATAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTTTCAAATAACATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
25294638 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCTAGGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
*
25294699 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
25294764 TTGAAGCATTTTTTAAACTATTTGCTCAGAAACGTCAACTTGAAATTATTTCTTCCAGGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
*
25294825 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCA-AAAGTTCTTCTCATAA-AGCATCCT
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAA-TTCTTCTCA-AATAGCATCCT
* * *
25294888 GCCTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGAC
64 GCTTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * * * * * *
25294950 CTACTGTAGCAAAAGCGCGTACAGGTGGGCGCGACTTCAGAAATCCTTCTGATAA-AGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTG
25295014 CTT
65 CTT
25295017 TGATTTTATC
Statistics
Matches: 525, Mismatches: 39, Indels: 9
0.92 0.07 0.02
Matches are distributed among these distances:
124 67 0.13
125 221 0.42
126 235 0.45
127 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
Found at i:25294786 original size:251 final size:251
Alignment explanation
Indices: 25294324--25295016 Score: 1072
Period size: 251 Copynumber: 2.8 Consensus size: 251
25294314 CTCAAACATG
* * *
25294324 CTACTGTAGTAAAAGCGCGTTCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
25294389 TAGAAGCG-TTTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTCCAGGACCTACT
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCTACT
* * *
25294453 GTAGCAAAAGCACGTCCACGAGGGTGCGATTTCACAAATTCTTCTCAAATAGCATCCTTCTTGAA
131 GTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAA
*
25294518 GCGTTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTT-TTACAGGAC
196 GCATTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTACAGGAC
* * *
25294573 CTACTATAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTTTCAAATAACATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
25294638 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCTAGGACCTAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGACCTAC
*
25294703 TGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGA
130 TGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGA
* * *
25294768 AGCATTTTTTAAACTATTTGCTCAGAAACGTCAACTTGAAATTATTTCTTCCAGGAC
195 AGCATTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTACAGGAC
25294825 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCA-AAAGTTCTTCTCATAA-AGCATCCT
1 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAA-TTCTTCTCA-AATAGCATCCT
* *
25294888 GCCTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAAGACCTA
64 GCTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCTA
* * * * * * *
25294953 CTGTAGCAAAAGCGCGTACAGGTGGGCGCGACTTCAGAAATCCTTCTGATAA-AGCATCCTGCTT
129 CTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTGCTT
25295017 TGATTTTATC
Statistics
Matches: 405, Mismatches: 33, Indels: 10
0.90 0.07 0.02
Matches are distributed among these distances:
249 66 0.16
250 40 0.10
251 183 0.45
252 114 0.28
253 2 0.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (251 bp):
CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCTACT
GTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTTGAA
GCATTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTACAGGAC
Found at i:25297638 original size:42 final size:42
Alignment explanation
Indices: 25297579--25297661 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
25297569 AAATTCAAAG
25297579 GGATAAGAACAAGAGTTCAAATGTTTAAATTTCAAACGTTTT
1 GGATAAGAACAAGAGTTCAAATGTTTAAATTTCAAACGTTTT
*
25297621 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAACGTTT
1 GGATAAGAACAAGAGTTCAAATGTTTAAATTTCAAACGTTT
25297662 CACACATATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.33
Consensus pattern (42 bp):
GGATAAGAACAAGAGTTCAAATGTTTAAATTTCAAACGTTTT
Found at i:25298322 original size:36 final size:36
Alignment explanation
Indices: 25298257--25298329 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 36
25298247 AATATATATC
25298257 TATCAAAGTTTAAAAAAAAAGTAAAAAAAA-TTCGAA
1 TATCAAAGTTTAAAAAAAAAG-AAAAAAAACTTCGAA
*
25298293 TATCAAAGTTTAAAAGAAAAA-AGAGAAAAACTTCGAA
1 TATCAAAGTTTAAAA-AAAAAGA-AAAAAAACTTCGAA
25298330 AAAAAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
35 1 0.03
36 21 0.64
37 11 0.33
ACGTcount: A:0.62, C:0.07, G:0.11, T:0.21
Consensus pattern (36 bp):
TATCAAAGTTTAAAAAAAAAGAAAAAAAACTTCGAA
Found at i:25304768 original size:36 final size:36
Alignment explanation
Indices: 25304703--25304775 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 36
25304693 AATATATATC
25304703 TATCAAAGTTTAAAAAAAAAGTAAAAAAAA-TTCGAA
1 TATCAAAGTTTAAAAAAAAAG-AAAAAAAACTTCGAA
*
25304739 TATCAAAGTTTAAAAGAAAAA-AGAGAAAAACTTCGAA
1 TATCAAAGTTTAAAA-AAAAAGA-AAAAAAACTTCGAA
25304776 AAAAAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
35 1 0.03
36 21 0.64
37 11 0.33
ACGTcount: A:0.62, C:0.07, G:0.11, T:0.21
Consensus pattern (36 bp):
TATCAAAGTTTAAAAAAAAAGAAAAAAAACTTCGAA
Found at i:25312826 original size:62 final size:61
Alignment explanation
Indices: 25312760--25312917 Score: 185
Period size: 62 Copynumber: 2.6 Consensus size: 61
25312750 TGTGTCTCAG
* * * * *
25312760 ATTCGAAGTCAATGAGTCACACGGCCTGGACAGACACCCGTGTGTCAATA-CGTA-TGATTCAA
1 ATTCGAAGTCAGTGAGTTACATGGCCTGGACACACACCCGTGTGT---TAGCGTAGTGATCCAA
* ** *
25312822 ATTCGAAGTCAGTGAGTTACATGACCTGGACACATGCCCGTGTGTTAGCTTATGTGATCCAA
1 ATTCGAAGTCAGTGAGTTACATGGCCTGGACACACACCCGTGTGTTAGCGTA-GTGATCCAA
25312884 ATTCGAAGTCAGTGAGTTACATGGCCTGGACACA
1 ATTCGAAGTCAGTGAGTTACATGGCCTGGACACA
25312918 TGCCCATGCG
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
59 2 0.02
60 3 0.04
62 78 0.94
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (61 bp):
ATTCGAAGTCAGTGAGTTACATGGCCTGGACACACACCCGTGTGTTAGCGTAGTGATCCAA
Found at i:25314731 original size:4 final size:4
Alignment explanation
Indices: 25314722--25314755 Score: 59
Period size: 4 Copynumber: 8.2 Consensus size: 4
25314712 TAAACTAAGT
25314722 ATAA ATAA ATAA ATAA ATAA ATAA ATAAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA AT-AA ATAA A
25314756 AATAAACTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:25315307 original size:28 final size:27
Alignment explanation
Indices: 25315262--25315314 Score: 97
Period size: 28 Copynumber: 1.9 Consensus size: 27
25315252 TTGAAAAGAT
25315262 TCACATGGTTCACAGAGTTGCATAACA
1 TCACATGGTTCACAGAGTTGCATAACA
25315289 TCACATGGTTTCACAGAGTTGCATAA
1 TCACATGG-TTCACAGAGTTGCATAA
25315315 TCATACCATG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 8 0.32
28 17 0.68
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (27 bp):
TCACATGGTTCACAGAGTTGCATAACA
Found at i:25319895 original size:15 final size:15
Alignment explanation
Indices: 25319864--25319906 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
25319854 AAGAGAAAAT
*
25319864 AAAGAAAAGAAAAGAA
1 AAAGAAAA-AGAAGAA
*
25319880 AAAGCAAAAGAAGAA
1 AAAGAAAAAGAAGAA
25319895 AAAGAAAAAGAA
1 AAAGAAAAAGAA
25319907 ATAAATAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 17 0.71
16 7 0.29
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAGAAGAA
Found at i:25319897 original size:21 final size:22
Alignment explanation
Indices: 25319865--25319920 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
25319855 AGAGAAAATA
25319865 AAGAAAAGAAAAGAAAAAGCAA
1 AAGAAAAGAAAAGAAAAAGCAA
*
25319887 AAGAAGA-AAAAGAAAAAG-AA
1 AAGAAAAGAAAAGAAAAAGCAA
*
25319907 ATA-AATAGAAAAGA
1 A-AGAAAAGAAAAGA
25319921 GAGGCAAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 6 0.20
21 18 0.60
22 6 0.20
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (22 bp):
AAGAAAAGAAAAGAAAAAGCAA
Found at i:25320023 original size:30 final size:31
Alignment explanation
Indices: 25319989--25320070 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 31
25319979 TTTGAAAAGC
*
25319989 AAAAAGAAAAAGAAAAAGAAA-ATGAGATTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
* * *
25320019 AAAAAGAGAACG-AAAAGAAATTTGAGAGTG
1 AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
*
25320049 AAAAA-AAAGATGAAAAAGAAAT
1 AAAAAGAAA-AAGAAAAAGAAAT
25320071 TGAAACAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 10 0.23
30 24 0.56
31 9 0.21
ACGTcount: A:0.67, C:0.01, G:0.21, T:0.11
Consensus pattern (31 bp):
AAAAAGAAAAAGAAAAAGAAATATGAGAGTG
Found at i:25320043 original size:24 final size:24
Alignment explanation
Indices: 25319994--25320040 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
25319984 AAAGCAAAAA
*
25319994 GAAAAAGAAAAAGAAAATGAGATT
1 GAAAAAGAAAAAGAAAATGAAATT
* *
25320018 GAAAAAGAGAACGAAAA-GAAATT
1 GAAAAAGAAAAAGAAAATGAAATT
25320041 TGAGAGTGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.66, C:0.02, G:0.21, T:0.11
Consensus pattern (24 bp):
GAAAAAGAAAAAGAAAATGAAATT
Found at i:25322976 original size:30 final size:31
Alignment explanation
Indices: 25322942--25323038 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
25322932 AGCTCACTCC
*
25322942 TAGCTC-ACTTTCAACTTACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTTACGAGCTAAACCT
* * * *
25322972 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTTACGAGCTAAACCT
* * *
25323002 CAGCTCAACTTT-AGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTCAGCTTACGAGCTAAACCT
25323032 TAGCTCA
1 TAGCTCA
25323039 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
30 48 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTTACGAGCTAAACCT
Found at i:25331563 original size:21 final size:21
Alignment explanation
Indices: 25331534--25331576 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
25331524 TTTGGTATTT
25331534 AGGAATTGGTACGAAATGGTA
1 AGGAATTGGTACGAAATGGTA
*
25331555 AGGATTTGGTACGAAATGGTA
1 AGGAATTGGTACGAAATGGTA
25331576 A
1 A
25331577 TGGTTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.05, G:0.33, T:0.26
Consensus pattern (21 bp):
AGGAATTGGTACGAAATGGTA
Found at i:25337366 original size:33 final size:33
Alignment explanation
Indices: 25337328--25337390 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
25337318 GATTACTCAC
25337328 TTCACTCG-TTTCTTTT-ATAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTTCA-AG-CTCTCTTTCTTT
*
25337361 TTCACTTGATTTCTTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTTCAAGCTCTCTTTC
25337391 AATTTCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
33 16 0.59
34 10 0.37
35 1 0.04
ACGTcount: A:0.13, C:0.25, G:0.06, T:0.56
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAAGCTCTCTTTCTTT
Found at i:25337422 original size:14 final size:13
Alignment explanation
Indices: 25337387--25337525 Score: 56
Period size: 12 Copynumber: 10.5 Consensus size: 13
25337377 TCAAGCTCTC
25337387 TTTCAA-TTTCTT
1 TTTCAATTTTCTT
**
25337399 TTTCGCTTTTTCTT
1 TTTC-AATTTTCTT
25337413 TTTCAATTTTCTTT
1 TTTCAATTTTC-TT
25337427 TCTTC-ATTTTCTTT
1 T-TTCAATTTTC-TT
* **
25337441 TCTCTCACTTTTCGA
1 T-T-TCAATTTTCTT
*
25337456 TTTC-TTTTTCTT
1 TTTCAATTTTCTT
*
25337468 TTGCAA-TTTCTT
1 TTTCAATTTTCTT
* *
25337480 TTTC-TTTTTCGT
1 TTTCAATTTTCTT
** *
25337492 TTTCTTTTTGTTTT
1 TTTCAATTT-TCTT
25337506 CTTTCAA-TTTCTT
1 -TTTCAATTTTCTT
25337519 TTTCAAT
1 TTTCAAT
25337526 CTCTTTTCCT
Statistics
Matches: 95, Mismatches: 20, Indels: 23
0.69 0.14 0.17
Matches are distributed among these distances:
12 36 0.38
13 14 0.15
14 30 0.32
15 10 0.11
16 5 0.05
ACGTcount: A:0.09, C:0.19, G:0.04, T:0.68
Consensus pattern (13 bp):
TTTCAATTTTCTT
Found at i:25337495 original size:18 final size:18
Alignment explanation
Indices: 25337404--25337505 Score: 79
Period size: 18 Copynumber: 5.6 Consensus size: 18
25337394 TTCTTTTTCG
25337404 CTTTTTCTTTTTCAATTTT
1 CTTTTTCTTTTTC-ATTTT
25337423 C-TTTTC---TTCATTTT
1 CTTTTTCTTTTTCATTTT
25337437 CTTTTCTCTCACTTTTCGA-TTT
1 CTTTT-TCT---TTTTC-ATTTT
* *
25337459 CTTTTTCTTTTGCAATTT
1 CTTTTTCTTTTTCATTTT
*
25337477 CTTTTTCTTTTTCGTTTT
1 CTTTTTCTTTTTCATTTT
*
25337495 CTTTTTGTTTT
1 CTTTTTCTTTT
25337506 CTTTCAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 21
0.72 0.05 0.22
Matches are distributed among these distances:
14 6 0.09
15 6 0.09
16 2 0.03
17 1 0.01
18 37 0.54
19 1 0.01
21 3 0.04
22 11 0.16
23 1 0.01
ACGTcount: A:0.07, C:0.19, G:0.04, T:0.71
Consensus pattern (18 bp):
CTTTTTCTTTTTCATTTT
Found at i:25337522 original size:6 final size:6
Alignment explanation
Indices: 25337393--25337509 Score: 65
Period size: 6 Copynumber: 18.2 Consensus size: 6
25337383 TCTCTTTCAA
* *
25337393 TTTCTT TTTCGCTT TTTCTT TTTCAAT TTTCTTT TCTTCAT TTTCTT TTCTCTCACT
1 TTTCTT TTT--CTT TTTCTT TTTC-TT TTTC-TT T-TTCTT TTTCTT TT-TCT---T
** * ** *
25337450 TTTCGA TTTCTT TTTCTT TTGCAA TTTCTT TTTCTT TTTCGT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
*
25337498 TTT-GT TTTCTT T
1 TTTCTT TTTCTT T
25337510 CAATTTCTTT
Statistics
Matches: 83, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
5 4 0.05
6 53 0.64
7 12 0.14
8 9 0.11
9 2 0.02
10 3 0.04
ACGTcount: A:0.06, C:0.19, G:0.04, T:0.71
Consensus pattern (6 bp):
TTTCTT
Found at i:25342138 original size:17 final size:18
Alignment explanation
Indices: 25342116--25342156 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
25342106 CATTTCTTTT
25342116 TCTTTTGAATCACTC-TC
1 TCTTTTGAATCACTCATC
**
25342133 TCTTTTTTATCACTCATC
1 TCTTTTGAATCACTCATC
25342151 T-TTTTG
1 TCTTTTG
25342157 TTTTTCTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.15, C:0.24, G:0.05, T:0.56
Consensus pattern (18 bp):
TCTTTTGAATCACTCATC
Found at i:25344419 original size:12 final size:13
Alignment explanation
Indices: 25344392--25344426 Score: 54
Period size: 12 Copynumber: 2.7 Consensus size: 13
25344382 CGTATGCAAT
25344392 TTTTTTTTTCAAAA
1 TTTTTTTTTC-AAA
25344406 TTTTTTTTTC-AA
1 TTTTTTTTTCAAA
25344418 TTTTTTTTT
1 TTTTTTTTT
25344427 GAATCTACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 11 0.52
14 10 0.48
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTCAAA
Found at i:25344426 original size:13 final size:13
Alignment explanation
Indices: 25344388--25344426 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
25344378 AGACCGTATG
25344388 CAATTTTTTTTTT
1 CAATTTTTTTTTT
*
25344401 CAAAATTTTTTTTT
1 C-AATTTTTTTTTT
25344415 CAATTTTTTTTT
1 CAATTTTTTTTT
25344427 GAATCTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
CAATTTTTTTTTT
Found at i:25346582 original size:10 final size:10
Alignment explanation
Indices: 25346569--25346605 Score: 67
Period size: 10 Copynumber: 3.8 Consensus size: 10
25346559 AGACTTTTCA
25346569 CTTTTTTTTT
1 CTTTTTTTTT
25346579 CTTTTTTTTT
1 CTTTTTTTTT
25346589 C-TTTTTTTT
1 CTTTTTTTTT
25346598 CTTTTTTT
1 CTTTTTTT
25346606 GCTCACTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:25346583 original size:9 final size:9
Alignment explanation
Indices: 25346571--25346605 Score: 61
Period size: 9 Copynumber: 3.8 Consensus size: 9
25346561 ACTTTTCACT
25346571 TTTTTTTTC
1 TTTTTTTTC
25346580 TTTTTTTTTC
1 -TTTTTTTTC
25346590 TTTTTTTTC
1 TTTTTTTTC
25346599 TTTTTTT
1 TTTTTTT
25346606 GCTCACTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:25346660 original size:18 final size:17
Alignment explanation
Indices: 25346616--25346649 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
25346606 GCTCACTTCT
25346616 TTTTTTTTTGAATTTCGA
1 TTTTTTTTTGAATTTC-A
25346634 TTTTTTTTTGAATTTC
1 TTTTTTTTTGAATTTC
25346650 TTCTCTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.09, T:0.71
Consensus pattern (17 bp):
TTTTTTTTTGAATTTCA
Found at i:25351820 original size:22 final size:22
Alignment explanation
Indices: 25351792--25351835 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
25351782 TTTGGTATTT
25351792 GGGATTTGGTACGAAATGGTAA
1 GGGATTTGGTACGAAATGGTAA
25351814 GGGATTTGGTACGAAATGGTAA
1 GGGATTTGGTACGAAATGGTAA
25351836 TGGTTCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.36, T:0.27
Consensus pattern (22 bp):
GGGATTTGGTACGAAATGGTAA
Found at i:25353082 original size:31 final size:31
Alignment explanation
Indices: 25353016--25353083 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
25353006 TAATGTCCAA
* *
25353016 TTGATATTGAGCTGAATCGTAAGTATTTGAG
1 TTGAAATTGAGCTGAATCGTAACTATTTGAG
*
25353047 TTGAAATTGAGCTGATTCG-AACTCA-TTGAG
1 TTGAAATTGAGCTGAATCGTAACT-ATTTGAG
25353077 CTTGAAA
1 -TTGAAA
25353084 GGAGCTGGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 8 0.25
31 24 0.75
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (31 bp):
TTGAAATTGAGCTGAATCGTAACTATTTGAG
Found at i:25357919 original size:40 final size:40
Alignment explanation
Indices: 25357836--25358098 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
25357826 TTGAATGCTG
* * * * * *
25357836 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
25357876 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25357916 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25357956 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
25357996 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25358036 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25358075 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25358099 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:25358118 original size:79 final size:80
Alignment explanation
Indices: 25357875--25358133 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
25357865 AAGTGAATAT
* * * * * * *
25357875 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
25357939 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
25357955 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
25358020 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
25358035 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
25358099 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
25358114 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
25358134 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:25365860 original size:40 final size:40
Alignment explanation
Indices: 25365777--25366039 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
25365767 TTGAATGCTG
* * * * * *
25365777 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
25365817 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
25365857 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
25365897 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
25365937 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25365977 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
25366016 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
25366040 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:25366059 original size:79 final size:80
Alignment explanation
Indices: 25365816--25366074 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
25365806 AAGTGAATAT
* * * * * * *
25365816 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
25365880 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
25365896 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
25365961 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
25365976 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
25366040 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
25366055 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
25366075 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:25367538 original size:12 final size:12
Alignment explanation
Indices: 25367521--25367559 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 12
25367511 AAACCGTATG
25367521 CAATTTTTTTTT
1 CAATTTTTTTTT
25367533 CAATTTTTTTTT
1 CAATTTTTTTTT
25367545 CGAACTCTTTTTTTT
1 C-AA-T-TTTTTTTT
25367560 TACGTACCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 13 0.54
13 2 0.08
14 1 0.04
15 8 0.33
ACGTcount: A:0.15, C:0.13, G:0.03, T:0.69
Consensus pattern (12 bp):
CAATTTTTTTTT
Found at i:25367887 original size:22 final size:22
Alignment explanation
Indices: 25367859--25367902 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
25367849 TTTGGTATTT
25367859 GGGATTTGGTACGAAATGGTAA
1 GGGATTTGGTACGAAATGGTAA
25367881 GGGATTTGGTACGAAATGGTAA
1 GGGATTTGGTACGAAATGGTAA
25367903 TGGTTCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.36, T:0.27
Consensus pattern (22 bp):
GGGATTTGGTACGAAATGGTAA
Found at i:25371514 original size:21 final size:22
Alignment explanation
Indices: 25371472--25371514 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
25371462 TTTTGAACCA
25371472 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
25371494 TTACCATTTCGTACC-AATCCC
1 TTACCATTTCGTACCAAATCCC
25371515 AAATACCAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.26, C:0.37, G:0.05, T:0.33
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:25374132 original size:20 final size:20
Alignment explanation
Indices: 25374107--25374149 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
25374097 AAAAGAAAAG
25374107 AAAGAAGAGAGATTGAGAGA
1 AAAGAAGAGAGATTGAGAGA
** *
25374127 AAAGAATCGAGATTGTGAGA
1 AAAGAAGAGAGATTGAGAGA
25374147 AAA
1 AAA
25374150 ACAAGAGCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.30, T:0.14
Consensus pattern (20 bp):
AAAGAAGAGAGATTGAGAGA
Found at i:25376485 original size:22 final size:22
Alignment explanation
Indices: 25376457--25376500 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
25376447 TTTTGAACCA
25376457 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
25376479 TTACCATTTCGTACCAAATCCC
1 TTACCATTTCGTACCAAATCCC
25376501 AAATACCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.05, T:0.32
Consensus pattern (22 bp):
TTACCATTTCGTACCAAATCCC
Found at i:25381335 original size:29 final size:27
Alignment explanation
Indices: 25381299--25381355 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 27
25381289 AAAGTGATTA
25381299 AAAAAATTGACA-CAAGCAGAATTTAAAAG
1 AAAAAATTGACAGCAAG-A-AA-TTAAAAG
25381328 AAAAAATTGACAGCAAGAAATTAAAAG
1 AAAAAATTGACAGCAAGAAATTAAAAG
25381355 A
1 A
25381356 TAAGTCCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 8 0.30
28 2 0.07
29 13 0.48
30 4 0.15
ACGTcount: A:0.61, C:0.09, G:0.14, T:0.16
Consensus pattern (27 bp):
AAAAAATTGACAGCAAGAAATTAAAAG
Found at i:25385111 original size:20 final size:20
Alignment explanation
Indices: 25385062--25385122 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
25385052 CCAATAAAAT
25385062 AAATGAGCT-GAATTGTAGCT-
1 AAATGAGCTCG-ATTGT-GCTG
25385082 AAATTGAGCTCGATTGTGCTG
1 AAA-TGAGCTCGATTGTGCTG
* *
25385103 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCGATTGTGCTG
25385123 GTCGAAGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
20 21 0.58
21 14 0.39
22 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (20 bp):
AAATGAGCTCGATTGTGCTG
Found at i:25386803 original size:11 final size:12
Alignment explanation
Indices: 25386773--25386804 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
25386763 TTTCACTCTT
25386773 CTCTTTTTCAAA
1 CTCTTTTTCAAA
25386785 CTCTTTTTCAAA
1 CTCTTTTTCAAA
*
25386797 TTCTTTTT
1 CTCTTTTT
25386805 TCGCTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.22, G:0.00, T:0.59
Consensus pattern (12 bp):
CTCTTTTTCAAA
Found at i:25386829 original size:14 final size:13
Alignment explanation
Indices: 25386797--25386844 Score: 53
Period size: 14 Copynumber: 3.6 Consensus size: 13
25386787 CTTTTTCAAA
**
25386797 TTCTTTTTTCGCT
1 TTCTTTTTTCATT
25386810 TT-TTTTTTCAATT
1 TTCTTTTTTC-ATT
25386823 TTCTTTTCTTCATT
1 TTCTTTT-TTCATT
25386837 TTCTTTTT
1 TTCTTTTT
25386845 CTCTCACTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 7 0.23
13 6 0.20
14 14 0.47
15 3 0.10
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.75
Consensus pattern (13 bp):
TTCTTTTTTCATT
Found at i:25386844 original size:15 final size:16
Alignment explanation
Indices: 25386810--25386846 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
25386800 TTTTTTCGCT
*
25386810 TTTTTTTTCAATTTTC
1 TTTTTCTTCAATTTTC
25386826 -TTTTCTTC-ATTTTC
1 TTTTTCTTCAATTTTC
25386840 TTTTTCT
1 TTTTTCT
25386847 CTCACTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCTTCAATTTTC
Done.