Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 84 of 211
Found at i:26001155 original size:20 final size:20
Alignment explanation
Indices: 26001127--26001175 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
26001117 AATGAGCTAA
26001127 ATTGTAGCTAAATTGAGCTCG
1 ATTG-AGCTAAATTGAGCTCG
* *
26001148 ATTGAGCTGACTTGAGCTCG
1 ATTGAGCTAAATTGAGCTCG
*
26001168 AGTGAGCT
1 ATTGAGCT
26001176 GGAAACGAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (20 bp):
ATTGAGCTAAATTGAGCTCG
Found at i:26001176 original size:20 final size:20
Alignment explanation
Indices: 26001139--26001176 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
26001129 TGTAGCTAAA
*
26001139 TTGAGCTCGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
26001159 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
26001177 GAAACGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:26002516 original size:23 final size:22
Alignment explanation
Indices: 26002464--26002516 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
26002454 TCCACGTCTT
*
26002464 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
26002486 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
26002509 TTTCTTTT
1 TTTCTTTT
26002517 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:26016151 original size:20 final size:20
Alignment explanation
Indices: 26016126--26016167 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
26016116 CAAACAAGTT
26016126 AGTTAATAAAAATCGACACA
1 AGTTAATAAAAATCGACACA
*
26016146 AGTTAATAAAAATTGACACA
1 AGTTAATAAAAATCGACACA
26016166 AG
1 AG
26016168 CAGAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.21
Consensus pattern (20 bp):
AGTTAATAAAAATCGACACA
Found at i:26017348 original size:21 final size:22
Alignment explanation
Indices: 26017303--26017348 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
26017293 AGAGAAAAAT
*
26017303 AAAAGTGAAAAAGAAGAAAATG
1 AAAAGTGAAAAAGAAGAAAAGG
**
26017325 AAAA-TGAAAAAGGCGAAAAGG
1 AAAAGTGAAAAAGAAGAAAAGG
26017346 AAA
1 AAA
26017349 GCGAGAGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (22 bp):
AAAAGTGAAAAAGAAGAAAAGG
Found at i:26018227 original size:20 final size:20
Alignment explanation
Indices: 26018197--26018250 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
26018187 AGTTCTTCCC
*
26018197 AGCTCAGTTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
26018217 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
26018237 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
26018251 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:26018231 original size:30 final size:31
Alignment explanation
Indices: 26018197--26018270 Score: 93
Period size: 30 Copynumber: 2.5 Consensus size: 31
26018187 AGTTCTTCCC
26018197 AGCTCAGTTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCAGTTTGAGCTCA-ATTGAGCTTAATTT
* *
26018227 AGCTC-GTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCAGTTTGAGCTCAATTGAGCTTAATTT
26018257 AGCTCA-TTTGAGCT
1 AGCTCAGTTTGAGCT
26018271 TGGCTTAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 5 0.13
30 34 0.87
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (31 bp):
AGCTCAGTTTGAGCTCAATTGAGCTTAATTT
Found at i:26018260 original size:20 final size:20
Alignment explanation
Indices: 26018197--26018271 Score: 57
Period size: 20 Copynumber: 3.8 Consensus size: 20
26018187 AGTTCTTCCC
* * * *
26018197 AGCTCAGTTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
26018217 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
26018236 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
26018257 AGCTC-ATTTGAGCTT
1 AGCTCAATTT-AGCTT
26018272 GGCTTAAGTT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
18 1 0.02
19 5 0.11
20 33 0.75
21 4 0.09
22 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:26025016 original size:27 final size:28
Alignment explanation
Indices: 26024932--26025029 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
26024922 CCTGAGATTG
* * * * *
26024932 GCACTAAATGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
26024961 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
26024989 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26025016 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26025030 GGCTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.35
29 17 0.27
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26028321 original size:13 final size:13
Alignment explanation
Indices: 26028303--26028362 Score: 77
Period size: 13 Copynumber: 4.5 Consensus size: 13
26028293 TTGGAGTAAC
26028303 AAAAAAATTCGAA
1 AAAAAAATTCGAA
26028316 AAAAAAATTCGAA
1 AAAAAAATTCGAA
*
26028329 AAAAAAATTGATTGAA
1 AAAAAAA-T--TCGAA
26028345 AAAAAAATTC-AA
1 AAAAAAATTCGAA
26028357 AAAAAA
1 AAAAAA
26028363 GTGAAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
12 8 0.19
13 21 0.50
14 1 0.02
15 1 0.02
16 11 0.26
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.17
Consensus pattern (13 bp):
AAAAAAATTCGAA
Found at i:26029326 original size:12 final size:13
Alignment explanation
Indices: 26029288--26029329 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
26029278 AAATAGTGAG
26029288 TGAAAAAGAAAAT
1 TGAAAAAGAAAAT
**
26029301 AAAGAAAAGAAAAT
1 TGA-AAAAGAAAAT
26029315 TGAAAAAG-AAAT
1 TGAAAAAGAAAAT
26029327 TGA
1 TGA
26029330 GATTGAGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 7 0.29
13 6 0.25
14 11 0.46
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (13 bp):
TGAAAAAGAAAAT
Found at i:26038005 original size:12 final size:11
Alignment explanation
Indices: 26037976--26038029 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
26037966 GTATTACGGT
*
26037976 ATTGTAAAAAA
1 ATTGAAAAAAA
*
26037987 A-TCAAAAAAA
1 ATTGAAAAAAA
*
26037997 TTTGAAAAAAA
1 ATTGAAAAAAA
*
26038008 ATTCAAAAAAA
1 ATTGAAAAAAA
26038019 ATT-AAAAAAA
1 ATTGAAAAAAA
26038029 A
1 A
26038030 GTTTGTATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
10 15 0.42
11 21 0.58
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (11 bp):
ATTGAAAAAAA
Found at i:26038013 original size:22 final size:20
Alignment explanation
Indices: 26037981--26038029 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
26037971 ACGGTATTGT
*
26037981 AAAAAAATCAAAAAAATTTGA
1 AAAAAAATCAAAAAAAATT-A
26038002 AAAAAAATTCAAAAAAAATTA
1 AAAAAAA-TCAAAAAAAATTA
26038023 AAAAAAA
1 AAAAAAA
26038030 GTTTGTATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAAAAATCAAAAAAAATTA
Found at i:26040119 original size:10 final size:10
Alignment explanation
Indices: 26040104--26040165 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
26040094 TTTGAACCAT
*
26040104 TACCAATTCG
1 TACCAATTCA
*
26040114 TACCAAATACCA
1 TACC-AAT-TCA
*
26040126 TACCATTTCA
1 TACCAATTCA
26040136 TACCAATTCCA
1 TACCAATT-CA
* *
26040147 TACCATTTCG
1 TACCAATTCA
26040157 TACCAATTC
1 TACCAATTC
26040166 CCAAATACCA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
10 22 0.54
11 14 0.34
12 5 0.12
ACGTcount: A:0.34, C:0.32, G:0.03, T:0.31
Consensus pattern (10 bp):
TACCAATTCA
Found at i:26040149 original size:21 final size:21
Alignment explanation
Indices: 26040104--26040166 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
26040094 TTTGAACCAT
* *
26040104 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
*
26040126 TACCATTTCATACCAATTCCA
1 TACCATTTCGTACCAATTCCA
26040147 TACCATTTCGTACCAATTCC
1 TACCATTTCGTACCAATTCC
26040167 CAAATACCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.33, C:0.33, G:0.03, T:0.30
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:26047641 original size:20 final size:20
Alignment explanation
Indices: 26047608--26047652 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
26047598 TAAATTCACA
26047608 TAATTAAAACAAGACAC-AAT
1 TAATTAAAACAAGAC-CTAAT
**
26047628 TAATTAAATTAAGACCTAAT
1 TAATTAAAACAAGACCTAAT
26047648 TAATT
1 TAATT
26047653 CGATTAGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 1 0.05
20 21 0.95
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.31
Consensus pattern (20 bp):
TAATTAAAACAAGACCTAAT
Found at i:26068172 original size:23 final size:22
Alignment explanation
Indices: 26068120--26068172 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
26068110 TCCACGTCTT
*
26068120 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
26068142 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
26068165 TTTCTTTT
1 TTTCTTTT
26068173 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:26070546 original size:4 final size:4
Alignment explanation
Indices: 26070537--26070564 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
26070527 TTAAACTAAG
26070537 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
26070565 AATAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:26072134 original size:13 final size:13
Alignment explanation
Indices: 26072116--26072166 Score: 93
Period size: 13 Copynumber: 3.8 Consensus size: 13
26072106 AACACAAAAT
26072116 AAATTTTTTTTTC
1 AAATTTTTTTTTC
26072129 AAATTTTTTTTTC
1 AAATTTTTTTTTC
26072142 AAATTTTTTTTTTC
1 AAA-TTTTTTTTTC
26072156 AAATTTTTTTT
1 AAATTTTTTTT
26072167 ACAATCTCGT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 24 0.65
14 13 0.35
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (13 bp):
AAATTTTTTTTTC
Found at i:26072138 original size:14 final size:14
Alignment explanation
Indices: 26072119--26072166 Score: 89
Period size: 14 Copynumber: 3.5 Consensus size: 14
26072109 ACAAAATAAA
26072119 TTTTTTTTTCAAA-
1 TTTTTTTTTCAAAT
26072132 TTTTTTTTTCAAAT
1 TTTTTTTTTCAAAT
26072146 TTTTTTTTTCAAAT
1 TTTTTTTTTCAAAT
26072160 TTTTTTT
1 TTTTTTT
26072167 ACAATCTCGT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
13 13 0.38
14 21 0.62
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTTTTTTCAAAT
Found at i:26077334 original size:23 final size:22
Alignment explanation
Indices: 26077283--26077334 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
26077273 CCTCGTCTTT
*
26077283 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
26077305 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
26077328 TTCTTTT
1 TTCTTTT
26077335 TTCAATTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:26081647 original size:23 final size:22
Alignment explanation
Indices: 26081596--26081647 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
26081586 CCTCGTCTTT
*
26081596 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
26081618 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
26081641 TTCTTTT
1 TTCTTTT
26081648 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:26081656 original size:12 final size:12
Alignment explanation
Indices: 26081605--26081659 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
26081595 TTTCTTTTGT
26081605 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
26081618 -TCATTTTC-TC
1 TTCTTTTTCAAC
26081628 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
26081641 TTCTTTTTCAAT
1 TTCTTTTTCAAC
26081653 TTCTTTT
1 TTCTTTT
26081660 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.12
12 22 0.65
13 7 0.21
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:26081666 original size:17 final size:18
Alignment explanation
Indices: 26081641--26081678 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
26081631 TTTCTTCAAC
* *
26081641 TTCTTTTTCA-ATTTCTT
1 TTCTGTTTCACATTCCTT
26081658 TTCTGTTTCACATTCCTT
1 TTCTGTTTCACATTCCTT
26081676 TTC
1 TTC
26081679 ACTCTCAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.63
Consensus pattern (18 bp):
TTCTGTTTCACATTCCTT
Found at i:26085476 original size:9 final size:9
Alignment explanation
Indices: 26085454--26085488 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
26085444 ATGGTATGAT
*
26085454 TGTGCAACTC
1 TGTG-AACTG
26085464 TGTGAACTG
1 TGTGAACTG
26085473 TGTGAACTG
1 TGTGAACTG
26085482 TGTGAAC
1 TGTGAAC
26085489 CTTTCAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 20 0.83
10 4 0.17
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (9 bp):
TGTGAACTG
Found at i:26098637 original size:17 final size:18
Alignment explanation
Indices: 26098617--26098651 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
26098607 AGAATGAGAT
26098617 AAAAT-TTGAAAAAGAAA
1 AAAATGTTGAAAAAGAAA
26098634 AAAATGTTGAAAAAGAAA
1 AAAATGTTGAAAAAGAAA
26098652 GGAGAGGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.14, T:0.17
Consensus pattern (18 bp):
AAAATGTTGAAAAAGAAA
Found at i:26105783 original size:19 final size:21
Alignment explanation
Indices: 26105750--26105797 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
26105740 AGGAAGACAC
26105750 AAAAAGA-AATCAAAAA-AG-
1 AAAAAGAGAATCAAAAAGAGT
*
26105768 AAAAAGAGAATGAAAAAGAGT
1 AAAAAGAGAATCAAAAAGAGT
26105789 AAAAAGAGA
1 AAAAAGAGA
26105798 TTGAGAGTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.27
19 8 0.31
20 2 0.08
21 9 0.35
ACGTcount: A:0.73, C:0.02, G:0.19, T:0.06
Consensus pattern (21 bp):
AAAAAGAGAATCAAAAAGAGT
Found at i:26116337 original size:18 final size:18
Alignment explanation
Indices: 26116298--26116337 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26116288 TTTTATTTAA
* * *
26116298 TTTTGTCTTTTTCTATTT
1 TTTTGACTTTTTCTACTG
26116316 TTTTGACTTTTTCTACTG
1 TTTTGACTTTTTCTACTG
26116334 TTTT
1 TTTT
26116338 TTTGCAGGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.07, C:0.12, G:0.07, T:0.72
Consensus pattern (18 bp):
TTTTGACTTTTTCTACTG
Found at i:26119185 original size:34 final size:32
Alignment explanation
Indices: 26119146--26119249 Score: 100
Period size: 33 Copynumber: 3.1 Consensus size: 32
26119136 GATTACTCTC
26119146 TTCACTCGTTTCTTTTACAAACTCTTTTTTCTTT
1 TTCACTCGTTTCTTTT-CAAACTC-TTTTTCTTT
* * * *
26119180 TTCACTTGATTTCTGTTCAAGCTCTTTTTCCTT
1 TTCACTCG-TTTCTTTTCAAACTCTTTTTCTTT
* * **
26119213 TTCACTCATTTTCTTTCCAATGTCTTTTTCTTT
1 TTCACTC-GTTTCTTTTCAAACTCTTTTTCTTT
26119246 TTCA
1 TTCA
26119250 ATCTCTTTTT
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
33 37 0.65
34 13 0.23
35 7 0.12
ACGTcount: A:0.13, C:0.24, G:0.05, T:0.58
Consensus pattern (32 bp):
TTCACTCGTTTCTTTTCAAACTCTTTTTCTTT
Found at i:26119241 original size:17 final size:18
Alignment explanation
Indices: 26119201--26119265 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 18
26119191 TCTGTTCAAG
26119201 CTCTTTTTCCTTTT-C-A-
1 CTCTTTTT-CTTTTCCAAT
*
26119217 CTCATTTTC-TTTCCAAT
1 CTCTTTTTCTTTTCCAAT
* *
26119234 GTCTTTTTCTTTTTCAAT
1 CTCTTTTTCTTTTCCAAT
*
26119252 CTCTTTTTATTTTC
1 CTCTTTTTCTTTTC
26119266 TTTCAATTTC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
14 3 0.08
15 2 0.05
16 8 0.21
17 7 0.18
18 18 0.47
ACGTcount: A:0.11, C:0.25, G:0.02, T:0.63
Consensus pattern (18 bp):
CTCTTTTTCTTTTCCAAT
Found at i:26128979 original size:33 final size:34
Alignment explanation
Indices: 26128928--26129002 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 34
26128918 AGATTTAAAC
*
26128928 AAATTAATTACTAACACTTATTTAAGTTAAACTA
1 AAATTAATTACTAACACTTATTTAAGCTAAACTA
*
26128962 AAATTAATT-CTAACACTTATTTGAGCTAAACTA
1 AAATTAATTACTAACACTTATTTAAGCTAAACTA
*
26128995 AATTTAAT
1 AAATTAAT
26129003 AAACTAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.45, C:0.12, G:0.04, T:0.39
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTAAACTA
Found at i:26147582 original size:21 final size:22
Alignment explanation
Indices: 26147553--26147603 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
26147543 TCTCTCTCGC
*
26147553 TTTCCTTTTCGCCTTTTTCA-T
1 TTTCATTTTCGCCTTTTTCACT
**
26147574 TTTCATTTTCTTCTTTTTCACT
1 TTTCATTTTCGCCTTTTTCACT
26147596 TTT-ATTTT
1 TTTCATTTT
26147604 TCTCTTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.08, C:0.22, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTCATTTTCGCCTTTTTCACT
Found at i:26147604 original size:22 final size:23
Alignment explanation
Indices: 26147565--26147615 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
26147555 TCCTTTTCGC
26147565 CTTTTTCATTTTCA-TTT-TCTT
1 CTTTTTCATTTTCATTTTCTCTT
26147586 CTTTTTCACTTTT-ATTTTTCTCTT
1 CTTTTTCA-TTTTCA-TTTTCTCTT
26147610 CTTTTT
1 CTTTTT
26147616 TTTCCTCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 9 0.35
22 4 0.15
23 3 0.12
24 10 0.38
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.73
Consensus pattern (23 bp):
CTTTTTCATTTTCATTTTCTCTT
Found at i:26162269 original size:165 final size:166
Alignment explanation
Indices: 26162070--26162398 Score: 389
Period size: 166 Copynumber: 2.0 Consensus size: 166
26162060 ACTAATAAGT
* * **
26162070 GTTTCGGTTCTAGGCTGATTCTTTATTGTTTTGGGTGTTTTACTTT-AGATCTTTTAATTCTAAG
1 GTTTCAGTTCTAGGCTGATTCTTTATTATTTTGGG-GTTTTACTTTCAGATC-TGGAATTCTAAG
* * * * * ** * * *
26162134 -TTTGATA-TTTCTGTTTCGTTTCAGATTCGATTGTCTAAAGTTTTCGTATGAGTTTCCCGTGAC
64 ATTTAAAATTTTCTGTTTCATTTCAGATCCAAGCGTCTAAAGTGTTCATAGGAGTTTCCCGTGAC
*
26162197 TTGACAACTCGATCTTGGTCCGCG-GCAACCCTCTATCA
129 TTGACAACTCAATCTTGGTCCGCGCGCAACCC-CTATCA
**
26162235 GTTTCAGTTCTTA-GCTGATTCTTTATTATTTTGGGGTTTTTGTTTCAGATCTGGAATTCTAAGA
1 GTTTCAGTTC-TAGGCTGATTCTTTATTATTTTGGGGTTTTACTTTCAGATCTGGAATTCTAAGA
* * ** *
26162299 TTTAAAATTTTCTGTTTCATTTTAGATCCAAGCGTTTAGCGTGTTCATAGGAGTTTCCTGTGACT
65 TTTAAAATTTTCTGTTTCATTTCAGATCCAAGCGTCTAAAGTGTTCATAGGAGTTTCCCGTGACT
26162364 TGACAACTCAATCTTGGTCCGCGCGCAACCCCTAT
130 TGACAACTCAATCTTGGTCCGCGCGCAACCCCTAT
26162399 AATTTGGTAT
Statistics
Matches: 137, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
164 18 0.13
165 40 0.29
166 72 0.53
167 7 0.05
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.43
Consensus pattern (166 bp):
GTTTCAGTTCTAGGCTGATTCTTTATTATTTTGGGGTTTTACTTTCAGATCTGGAATTCTAAGAT
TTAAAATTTTCTGTTTCATTTCAGATCCAAGCGTCTAAAGTGTTCATAGGAGTTTCCCGTGACTT
GACAACTCAATCTTGGTCCGCGCGCAACCCCTATCA
Found at i:26162588 original size:18 final size:17
Alignment explanation
Indices: 26162545--26162594 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
26162535 TCACACAAAA
26162545 AAATCAGTAGAAAAAGTC
1 AAATCA-TAGAAAAAGTC
* *
26162563 AAAACATAGAAAAAGATG
1 AAATCATAGAAAAAG-TC
*
26162581 AAATCATATAAAAA
1 AAATCATAGAAAAA
26162595 TTTTAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 9 0.33
18 18 0.67
ACGTcount: A:0.64, C:0.08, G:0.12, T:0.16
Consensus pattern (17 bp):
AAATCATAGAAAAAGTC
Found at i:26168075 original size:46 final size:46
Alignment explanation
Indices: 26168008--26168096 Score: 160
Period size: 46 Copynumber: 1.9 Consensus size: 46
26167998 AAAAGGCCTT
*
26168008 GACCCACTATCAAGAATGATAGGAACCTTGTTATATGATGAACCTC
1 GACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGAACCTC
*
26168054 GACCCACTATCAAGGATGATAGGAACCTTGGTATATGATGAAC
1 GACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGAAC
26168097 GCCATACTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (46 bp):
GACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGAACCTC
Found at i:26170656 original size:35 final size:35
Alignment explanation
Indices: 26170610--26170679 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
26170600 TTGAGTTGGG
* *
26170610 CCTTTGTGACTCGTCTCATTCCCCCCTTCCTCAAA
1 CCTTTGTGACTCGTATCATTCCCCCATTCCTCAAA
26170645 CCTTTGTGACTCGTATCATTCCCCCATTCCTCAAA
1 CCTTTGTGACTCGTATCATTCCCCCATTCCTCAAA
26170680 AAGATTCATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.40, G:0.09, T:0.34
Consensus pattern (35 bp):
CCTTTGTGACTCGTATCATTCCCCCATTCCTCAAA
Found at i:26186103 original size:85 final size:85
Alignment explanation
Indices: 26185960--26186138 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
26185950 GGCCGGCCAT
26185960 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
26186025 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
26186045 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
26186110 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
26186130 GGGCATGGG
1 GAGCATGGG
26186139 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:26187457 original size:47 final size:47
Alignment explanation
Indices: 26187403--26187947 Score: 807
Period size: 47 Copynumber: 11.6 Consensus size: 47
26187393 TATTTGAATA
*
26187403 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26187450 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26187499 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
26187546 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
26187593 AATGTGAAAGTGTATATATGTGATAA-GCCTGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCC-GAATGGCCAATGTGATG
* *
26187640 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26187687 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26187734 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26187781 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26187828 AATGTGAACA-TGCATATATGAGATAAGG-CGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
26187874 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
26187921 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
26187948 TCCCGAAGGG
Statistics
Matches: 469, Mismatches: 22, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
45 1 0.00
46 45 0.10
47 373 0.80
48 4 0.01
49 46 0.10
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:26190437 original size:38 final size:38
Alignment explanation
Indices: 26190373--26190447 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
26190363 AATCCGAGTT
*
26190373 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
26190411 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
26190448 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:26190565 original size:40 final size:40
Alignment explanation
Indices: 26190500--26190897 Score: 588
Period size: 40 Copynumber: 10.1 Consensus size: 40
26190490 AGGTCTCGAC
*
26190500 GATG-ATCCAGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
26190539 GATGTATCCGGGCTAAGTCCCAAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
26190579 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
26190619 GATGTATACGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
26190659 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
26190699 GATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
26190739 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* *
26190779 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * ** * *
26190819 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
26190859 GTTATAT-C-GGCTAGGT-CCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
26190896 GA
1 GA
26190898 CGTGTATTCG
Statistics
Matches: 329, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
37 20 0.06
38 4 0.01
39 5 0.02
40 300 0.91
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:26192255 original size:84 final size:83
Alignment explanation
Indices: 26192153--26192314 Score: 267
Period size: 84 Copynumber: 1.9 Consensus size: 83
26192143 GGCCGGCCAT
26192153 GAGCATGGTGGACAAGATGTTATGGCTAAAAAC-TGTCATAAACAATGTT-GGGTAGTGCATTAT
1 GAGCATGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAAC--TGTTGGGGTAGTGCATTAT
26192216 GTAAGGATT-AATAAAATAAA
64 -TAAGGATTAAATAAAATAAA
26192236 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACTGTTGGGGTAGTGCATTATT
1 GAGCAT-GGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACTGTTGGGGTAGTGCATTATT
26192301 AAGGATTAAATAAA
65 AAGGATTAAATAAA
26192315 GGCATGGGCA
Statistics
Matches: 75, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
83 18 0.24
84 47 0.63
85 10 0.13
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (83 bp):
GAGCATGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACTGTTGGGGTAGTGCATTATTA
AGGATTAAATAAAATAAA
Found at i:26193759 original size:46 final size:47
Alignment explanation
Indices: 26193558--26194088 Score: 638
Period size: 47 Copynumber: 11.6 Consensus size: 47
26193548 TATTTGAATA
*
26193558 AATGTGAAAGTGTATATAT-TGATAA-G-CTAAT-GCCAATGTGAT-
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26193600 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26193649 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
26193696 AATGTGAAAGTGTATATATGTGATAA-GCCGAATGGCCAAT-TGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
26193741 AATGT-AAAGTGTATATATATGTGATAAGG-CGAA--GCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26193786 AATGTG-AA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26193831 AATGTGAACA-TGCATAT-TGAGATAAGGCCG-ATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26193876 AATGTGAACA-TGTGTATGTGTGATAA-GCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26193922 AATGTGAACA-TGTGTATGTGTGATAA-GCGCGAATGG-CAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGC-CGAATGGCCAATGTGATG
* * *
26193968 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGGGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
26194015 AATGTGAAAGTGTATATATGTGATAAGGTCGAATGGACAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
26194062 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
26194089 TCCCGAAGGG
Statistics
Matches: 442, Mismatches: 24, Indels: 41
0.87 0.05 0.08
Matches are distributed among these distances:
42 26 0.06
43 4 0.01
44 21 0.05
45 80 0.18
46 134 0.30
47 155 0.35
48 10 0.02
49 12 0.03
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:26198923 original size:33 final size:34
Alignment explanation
Indices: 26198872--26198946 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
26198862 AGATTTAAAC
26198872 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
26198906 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
26198939 AATTTAAT
1 AAATTAAT
26198947 AAACTAACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:26200707 original size:18 final size:20
Alignment explanation
Indices: 26200666--26200719 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 20
26200656 CTTTTCACTC
26200666 TCAA-TCTCTTTTTTCTCCTTT
1 TCAATTCTC-TTTTTCT-CTTT
26200687 TC-ATTCTCTTTTTCT-TTT
1 TCAATTCTCTTTTTCTCTTT
26200705 TCAATT-TCTTTTTCT
1 TCAATTCTCTTTTTCT
26200720 ATCTTCCTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
18 14 0.45
19 3 0.10
20 8 0.26
21 6 0.19
ACGTcount: A:0.09, C:0.24, G:0.00, T:0.67
Consensus pattern (20 bp):
TCAATTCTCTTTTTCTCTTT
Found at i:26204396 original size:10 final size:11
Alignment explanation
Indices: 26204373--26204441 Score: 55
Period size: 10 Copynumber: 6.9 Consensus size: 11
26204363 AGCTAATAAC
26204373 GAGCTC-AA-T
1 GAGCTCGAATT
26204382 GAGCT-GAATT
1 GAGCTCGAATT
26204392 GAGCTCGAA-T
1 GAGCTCGAATT
* *
26204402 GAG-TTGACTT
1 GAGCTCGAATT
26204412 GAGCTCGAA-T
1 GAGCTCGAATT
26204422 GAGCT--AATTT
1 GAGCTCGAA-TT
26204432 GAGCTCGAAT
1 GAGCTCGAAT
26204442 GAACTAACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
8 2 0.04
9 10 0.21
10 26 0.55
11 7 0.15
12 2 0.04
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (11 bp):
GAGCTCGAATT
Found at i:26204402 original size:20 final size:20
Alignment explanation
Indices: 26204373--26204443 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
26204363 AGCTAATAAC
26204373 GAGCTC-AATGAGCTGAATT
1 GAGCTCGAATGAGCTGAATT
* *
26204392 GAGCTCGAATGAGTTGACTT
1 GAGCTCGAATGAGCTGAATT
26204412 GAGCTCGAATGAGCT-AATTT
1 GAGCTCGAATGAGCTGAA-TT
26204432 GAGCTCGAATGA
1 GAGCTCGAATGA
26204444 ACTAACAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
19 7 0.15
20 39 0.85
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (20 bp):
GAGCTCGAATGAGCTGAATT
Found at i:26208698 original size:26 final size:25
Alignment explanation
Indices: 26208669--26208745 Score: 68
Period size: 26 Copynumber: 3.1 Consensus size: 25
26208659 TTTCACACTA
*
26208669 TTTTTCTTTTTCTTTTGTCACTCTT
1 TTTTTCTTTTACTTTTGTCACTCTT
* * * * *
26208694 GTTTTTATTTCACTTTCGTCAGTATT
1 -TTTTTCTTTTACTTTTGTCACTCTT
*
26208720 TTTTTCTTTTGC-TTT-TCACTCTT
1 TTTTTCTTTTACTTTTGTCACTCTT
26208743 TTT
1 TTT
26208746 GATAGAGGGT
Statistics
Matches: 39, Mismatches: 12, Indels: 3
0.72 0.22 0.06
Matches are distributed among these distances:
23 9 0.23
24 2 0.05
25 9 0.23
26 19 0.49
ACGTcount: A:0.08, C:0.18, G:0.06, T:0.68
Consensus pattern (25 bp):
TTTTTCTTTTACTTTTGTCACTCTT
Found at i:26220377 original size:13 final size:13
Alignment explanation
Indices: 26220361--26220397 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
26220351 TTTTTTGAAA
26220361 TTTTTTTCAA--T
1 TTTTTTTCAATTT
26220372 TTTTTTTCAATTT
1 TTTTTTTCAATTT
*
26220385 TTTTTTTGAATTT
1 TTTTTTTCAATTT
26220398 ACAATTTACG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.43
13 13 0.57
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTTTTTCAATTT
Found at i:26220389 original size:11 final size:11
Alignment explanation
Indices: 26220349--26220389 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
26220339 CTTTCTCTTT
*
26220349 TTTTTTTTGAA
1 TTTTTTTTCAA
*
26220360 ATTTTTTTCAA
1 TTTTTTTTCAA
26220371 TTTTTTTTCAA
1 TTTTTTTTCAA
26220382 TTTTTTTT
1 TTTTTTTT
26220390 TTGAATTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:26225295 original size:22 final size:24
Alignment explanation
Indices: 26225261--26225304 Score: 56
Period size: 22 Copynumber: 1.9 Consensus size: 24
26225251 CTTGGACCAA
26225261 GATTTCCAAGA-T-TTGAAATCTT
1 GATTTCCAAGATTCTTGAAATCTT
* *
26225283 GATTTTCATGATTCTTGAAATC
1 GATTTCCAAGATTCTTGAAATC
26225305 GCTCCAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 9 0.50
23 1 0.06
24 8 0.44
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (24 bp):
GATTTCCAAGATTCTTGAAATCTT
Found at i:26228658 original size:13 final size:13
Alignment explanation
Indices: 26228640--26228679 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
26228630 AACAAAAAAT
26228640 AATTTTTTTTTCA
1 AATTTTTTTTTCA
*
26228653 AATTTTTTTTT-G
1 AATTTTTTTTTCA
*
26228665 AATTTTTTTTACA
1 AATTTTTTTTTCA
26228678 AA
1 AA
26228680 CTCGTAATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.65
Consensus pattern (13 bp):
AATTTTTTTTTCA
Found at i:26240450 original size:14 final size:14
Alignment explanation
Indices: 26240431--26240457 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26240421 TGCATCTTCC
26240431 CATGCATGAATCTA
1 CATGCATGAATCTA
26240445 CATGCATGAATCT
1 CATGCATGAATCT
26240458 TTCTAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:26241290 original size:43 final size:45
Alignment explanation
Indices: 26241242--26241338 Score: 137
Period size: 46 Copynumber: 2.2 Consensus size: 45
26241232 TATCACTTTC
*
26241242 ATAGTGTGG-C-GTTCATCATATATCAAGGTTCCTATCATCCTTG
1 ATAGTGTGGTCGGTTCATCATATACCAAGGTTCCTATCATCCTTG
*
26241285 ATAGTG-GGTCGAGGTTCATCATATACCAAGGTTCCTATCATTCTTG
1 ATAGTGTGGTC--GGTTCATCATATACCAAGGTTCCTATCATCCTTG
26241331 ATAGTGTG
1 ATAGTGTG
26241339 TTGAGGTCTG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
42 2 0.04
43 7 0.15
46 37 0.79
47 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.36
Consensus pattern (45 bp):
ATAGTGTGGTCGGTTCATCATATACCAAGGTTCCTATCATCCTTG
Found at i:26241303 original size:46 final size:46
Alignment explanation
Indices: 26241252--26241345 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
26241242 ATAGTGTGGC
*
26241252 GTTCATCATATATCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
* * *
26241298 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGTGTTGAG
1 GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
26241344 GT
1 GT
26241346 CTGTTAAACT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.23, C:0.18, G:0.21, T:0.37
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTATCATCCTTGATAGTGGGTCGAG
Found at i:26241637 original size:20 final size:21
Alignment explanation
Indices: 26241607--26241657 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
26241597 AATTTAACTT
*
26241607 AGTTCAGCTCAGTCGAGCTCA
1 AGTTCAGCTCAGTCAAGCTCA
*
26241628 AGTT-AGCTCATTCAAGCTCA
1 AGTTCAGCTCAGTCAAGCTCA
26241648 A-TTCAGCTCA
1 AGTTCAGCTCA
26241658 ATCTTAACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 21 0.78
21 4 0.15
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (21 bp):
AGTTCAGCTCAGTCAAGCTCA
Found at i:26242197 original size:20 final size:20
Alignment explanation
Indices: 26242172--26242267 Score: 106
Period size: 20 Copynumber: 4.8 Consensus size: 20
26242162 TTCCATGCGG
26242172 TTCAGCTCACTTGAGCTCAA
1 TTCAGCTCACTTGAGCTCAA
*
26242192 TTCAGCTCACTCGAGCTCAA
1 TTCAGCTCACTTGAGCTCAA
*
26242212 GTCAGCTCA-TTCGAGCTCAA
1 TTCAGCTCACTT-GAGCTCAA
* * **
26242232 GTCAGCTCCCACGAGCTCAA
1 TTCAGCTCACTTGAGCTCAA
*
26242252 TTCATCTCA-TTGAGCT
1 TTCAGCTCACTTGAGCT
26242268 TGTTATTAGC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
19 6 0.10
20 57 0.90
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (20 bp):
TTCAGCTCACTTGAGCTCAA
Found at i:26242217 original size:40 final size:39
Alignment explanation
Indices: 26242173--26242267 Score: 127
Period size: 40 Copynumber: 2.4 Consensus size: 39
26242163 TCCATGCGGT
* *
26242173 TCAGCTCACTTGAGCTCAATTCAGCTCACTCGAGCTCAAG
1 TCAGCTCA-TTGAGCTCAAGTCAGCTCACACGAGCTCAAG
* *
26242213 TCAGCTCATTCGAGCTCAAGTCAGCTCCCACGAGCTCAAT
1 TCAGCTCATT-GAGCTCAAGTCAGCTCACACGAGCTCAAG
*
26242253 TCATCTCATTGAGCT
1 TCAGCTCATTGAGCT
26242268 TGTTATTAGC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
39 7 0.14
40 42 0.86
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (39 bp):
TCAGCTCATTGAGCTCAAGTCAGCTCACACGAGCTCAAG
Found at i:26242218 original size:10 final size:10
Alignment explanation
Indices: 26242185--26242239 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
26242175 AGCTCACTTG
*
26242185 AGCTCAATTC
1 AGCTCAAGTC
*
26242195 AGCTC-ACTC
1 AGCTCAAGTC
26242204 GAGCTCAAGTC
1 -AGCTCAAGTC
*
26242215 AGCTC-ATTC
1 AGCTCAAGTC
26242224 GAGCTCAAGTC
1 -AGCTCAAGTC
26242235 AGCTC
1 AGCTC
26242240 CCACGAGCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 6 0.16
10 25 0.68
11 6 0.16
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (10 bp):
AGCTCAAGTC
Found at i:26243677 original size:10 final size:9
Alignment explanation
Indices: 26243663--26243698 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
26243653 TAACTCATTG
26243663 TAAAAAAAT
1 TAAAAAAAT
26243672 TAAAAAAAT
1 TAAAAAAAT
*
26243681 CAAAAAAAT
1 TAAAAAAAT
26243690 TCAAAAAAA
1 T-AAAAAAA
26243699 ATAGTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 17 0.71
10 7 0.29
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.17
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:26244859 original size:18 final size:18
Alignment explanation
Indices: 26244836--26244893 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
26244826 TGGAGAAATG
*
26244836 AAAGAAAAAGACATTGAA
1 AAAGAAAAAGAAATTGAA
*
26244854 AAAGAAAAAGAAATTGCA
1 AAAGAAAAAGAAATTGAA
*
26244872 AAAGAAAAGGAAATTGAA
1 AAAGAAAAAGAAATTGAA
26244890 AAAG
1 AAAG
26244894 TGAGTGAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.67, C:0.03, G:0.19, T:0.10
Consensus pattern (18 bp):
AAAGAAAAAGAAATTGAA
Found at i:26244891 original size:30 final size:29
Alignment explanation
Indices: 26244857--26244937 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 29
26244847 CATTGAAAAA
*
26244857 GAAAAAGAAATTGCAAAAGAAAAGGAAATT
1 GAAAAAGAAATTG-AAAAGAAAAAGAAATT
** * *
26244887 GAAAAAGTGAGTGAAAAGGAAAAAGAGATT
1 GAAAAAGAAATTGAAAA-GAAAAAGAAATT
26244917 GAAAAAGAAATTGAAAGAGAA
1 GAAAAAGAAATTGAAA-AGAA
26244938 GAAAAAGAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
29 4 0.10
30 36 0.88
31 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.25, T:0.12
Consensus pattern (29 bp):
GAAAAAGAAATTGAAAAGAAAAAGAAATT
Found at i:26244908 original size:18 final size:18
Alignment explanation
Indices: 26244887--26244926 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26244877 AAAGGAAATT
* *
26244887 GAAAAAGTGAGTGAAAAG
1 GAAAAAGAGAGTGAAAAA
*
26244905 GAAAAAGAGATTGAAAAA
1 GAAAAAGAGAGTGAAAAA
26244923 GAAA
1 GAAA
26244927 TTGAAAGAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.62, C:0.00, G:0.28, T:0.10
Consensus pattern (18 bp):
GAAAAAGAGAGTGAAAAA
Found at i:26246675 original size:20 final size:20
Alignment explanation
Indices: 26246650--26246698 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
26246640 TTCCATGCGG
*
26246650 TTCAGCTCACTTGAGCTCAA
1 TTCAGCTCACTCGAGCTCAA
26246670 TTCAGCTCACTCGAGCTCAA
1 TTCAGCTCACTCGAGCTCAA
*
26246690 GTCAGCTCA
1 TTCAGCTCA
26246699 AGTCAGCTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (20 bp):
TTCAGCTCACTCGAGCTCAA
Found at i:26246696 original size:10 final size:10
Alignment explanation
Indices: 26246663--26246707 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
26246653 AGCTCACTTG
*
26246663 AGCTCAATTC
1 AGCTCAAGTC
*
26246673 AGCTC-ACTC
1 AGCTCAAGTC
26246682 GAGCTCAAGTC
1 -AGCTCAAGTC
26246693 AGCTCAAGTC
1 AGCTCAAGTC
26246703 AGCTC
1 AGCTC
26246708 CCACGAGCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 3 0.10
10 25 0.81
11 3 0.10
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.22
Consensus pattern (10 bp):
AGCTCAAGTC
Found at i:26246697 original size:30 final size:30
Alignment explanation
Indices: 26246663--26246728 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
26246653 AGCTCACTTG
* *
26246663 AGCTCAATTCAGCTCACTCGAGCTCAAGTC
1 AGCTCAAGTCAGCTCACACGAGCTCAAGTC
* *
26246693 AGCTCAAGTCAGCTCCCACGAGCTCAATTC
1 AGCTCAAGTCAGCTCACACGAGCTCAAGTC
*
26246723 ATCTCA
1 AGCTCA
26246729 TTGAGCTTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.35, G:0.15, T:0.23
Consensus pattern (30 bp):
AGCTCAAGTCAGCTCACACGAGCTCAAGTC
Found at i:26246869 original size:28 final size:28
Alignment explanation
Indices: 26246836--26246901 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
26246826 ACTTGTCAGC
* *
26246836 TTATTACATGT-TTTAATTATGT-TTTAA
1 TTATTACAAGTGTTTAA-TATGTCTTAAA
*
26246863 TTAATTATAAGTGTTTAATATGTCTTAAA
1 TT-ATTACAAGTGTTTAATATGTCTTAAA
26246892 TTATTACAAG
1 TTATTACAAG
26246902 AATTAATAGG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
27 2 0.06
28 19 0.59
29 11 0.34
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.52
Consensus pattern (28 bp):
TTATTACAAGTGTTTAATATGTCTTAAA
Found at i:26248400 original size:22 final size:21
Alignment explanation
Indices: 26248371--26248418 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
26248361 AAGCATGAAC
*
26248371 TGAA-ATTTTAATGATTTAGTG
1 TGAACATTTTAATGAATT-GTG
* *
26248392 TGAACATTTTTATTAATTGTG
1 TGAACATTTTAATGAATTGTG
26248413 TGAACA
1 TGAACA
26248419 CATAGATGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (21 bp):
TGAACATTTTAATGAATTGTG
Found at i:26250816 original size:19 final size:22
Alignment explanation
Indices: 26250794--26250839 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
26250784 TTTTTCTTGA
26250794 TTTTGTA-TTTTTC-ACT--TT
1 TTTTGTACTTTTTCTACTAATT
*
26250812 TTTTTTACTTTTTCTACTAATT
1 TTTTGTACTTTTTCTACTAATT
26250834 TTTTGT
1 TTTTGT
26250840 GGGAAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 6 0.27
19 6 0.27
20 3 0.14
22 7 0.32
ACGTcount: A:0.13, C:0.11, G:0.04, T:0.72
Consensus pattern (22 bp):
TTTTGTACTTTTTCTACTAATT
Found at i:26256920 original size:12 final size:12
Alignment explanation
Indices: 26256892--26256931 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
26256882 ACTCGATTTC
*
26256892 TTTTCAAGCTCT
1 TTTTCAATCTCT
* *
26256904 CTTTCAATTTCT
1 TTTTCAATCTCT
26256916 TTTTCAATCTCT
1 TTTTCAATCTCT
26256928 TTTT
1 TTTT
26256932 GCTTTTCACT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.03, T:0.60
Consensus pattern (12 bp):
TTTTCAATCTCT
Found at i:26257055 original size:16 final size:16
Alignment explanation
Indices: 26257026--26257070 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
26257016 TCACTCTCAT
26257026 TTTCATTTTC-TTTTA
1 TTTCATTTTCTTTTTA
*
26257041 TTTCATTTTCTTTTTC
1 TTTCATTTTCTTTTTA
*
26257057 TCTCA-TTTCTTTTT
1 TTTCATTTTCTTTTT
26257071 TTCTTCTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 19 0.70
16 8 0.30
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTCATTTTCTTTTTA
Found at i:26257064 original size:21 final size:21
Alignment explanation
Indices: 26257005--26257089 Score: 86
Period size: 21 Copynumber: 4.1 Consensus size: 21
26256995 TCAAATTCTT
* *
26257005 TTTTCTTTTTCTCAC-TCTCA
1 TTTTCTTTTTCTCTCATTTCA
* * *
26257025 TTTTCATTTTCTTTTATTTCA
1 TTTTCTTTTTCTCTCATTTCA
26257046 TTTTCTTTTTCTCTCATTTC-
1 TTTTCTTTTTCTCTCATTTCA
26257066 TTTT-TTTCTTCTCTCAATTTCA
1 TTTTCTTT-TTCTCTC-ATTTCA
26257088 TT
1 TT
26257090 CAAGATTCAT
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
19 3 0.06
20 22 0.42
21 26 0.49
22 2 0.04
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTCTTTTTCTCTCATTTCA
Found at i:26257949 original size:14 final size:13
Alignment explanation
Indices: 26257930--26257959 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
26257920 ATTCCGAAAC
26257930 TTTTTTTCTTCTTT
1 TTTTTTTCTT-TTT
26257944 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
26257957 TTT
1 TTT
26257960 CAATACTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:26257959 original size:11 final size:11
Alignment explanation
Indices: 26257929--26257959 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
26257919 AATTCCGAAA
*
26257929 CTTTTTTTCTT
1 CTTTTTTTTTT
26257940 CTTTTTTTTTT
1 CTTTTTTTTTT
26257951 CTTTTTTTT
1 CTTTTTTTT
26257960 CAATACTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:26258022 original size:14 final size:13
Alignment explanation
Indices: 26258000--26258038 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
26257990 TACAAATAAT
26258000 AAATTTTTTTTTC
1 AAATTTTTTTTTC
26258013 AAATTTTTTTTTC
1 AAATTTTTTTTTC
*
26258026 GAATTTTCTTTTT
1 AAATTTT-TTTTT
26258039 TTACAATCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 19 0.79
14 5 0.21
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.69
Consensus pattern (13 bp):
AAATTTTTTTTTC
Found at i:26263524 original size:24 final size:24
Alignment explanation
Indices: 26263500--26263546 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
26263490 AAACTACTTC
26263500 TAAAAAAAACTCAAGAGAGAATTCT
1 TAAAAAAAACTCAA-AGAGAATTCT
** *
26263525 TGGAGAAAACTCAAAGAGAATT
1 TAAAAAAAACTCAAAGAGAATT
26263547 TTTCACTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:26272873 original size:42 final size:41
Alignment explanation
Indices: 26272814--26272938 Score: 214
Period size: 42 Copynumber: 3.0 Consensus size: 41
26272804 AAATTCAAAG
26272814 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCGAACGTTTT
1 GGATAAGAACAAGAGTTCAAATGTTTGAATTTC-AACGTTTT
*
26272856 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAATGTTTT
1 GGATAAGAACAAGAGTTCAAATGTTTGAATTTC-AACGTTTT
26272898 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAAGCGTTT
1 GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAA-CGTTT
26272939 CACACATATT
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
41 2 0.03
42 77 0.97
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.34
Consensus pattern (41 bp):
GGATAAGAACAAGAGTTCAAATGTTTGAATTTCAACGTTTT
Found at i:26274861 original size:25 final size:25
Alignment explanation
Indices: 26274833--26274885 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
26274823 TGTGCAGGTA
26274833 CATGAACAGCATTAAAAGAAGCATG
1 CATGAACAGCATTAAAAGAAGCATG
* *
26274858 CATGAACGGCATTAAAGGAAGCATG
1 CATGAACAGCATTAAAAGAAGCATG
26274883 CAT
1 CAT
26274886 ACTGATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.17, G:0.23, T:0.17
Consensus pattern (25 bp):
CATGAACAGCATTAAAAGAAGCATG
Found at i:26279477 original size:12 final size:12
Alignment explanation
Indices: 26279435--26279476 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
26279425 TTTTCATTTT
26279435 TTTCTTTTTC-A
1 TTTCTTTTTCAA
26279446 TTTC--TTTCAA
1 TTTCTTTTTCAA
26279456 TTTCTTTTTCAA
1 TTTCTTTTTCAA
26279468 TGTTCTTTT
1 T-TTCTTTT
26279477 CTCGCTCACG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 4 0.15
10 5 0.19
11 4 0.15
12 7 0.26
13 7 0.26
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:26282998 original size:20 final size:20
Alignment explanation
Indices: 26282973--26283027 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
26282963 TAACACATGT
26282973 ATTAAATTAAGACAAACTTA
1 ATTAAATTAAGACAAACTTA
* * *
26282993 ATTAAATCAAGACATATTTA
1 ATTAAATTAAGACAAACTTA
* *
26283013 ATTTAACTAAGACAA
1 ATTAAATTAAGACAA
26283028 GACAAATTAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.31
Consensus pattern (20 bp):
ATTAAATTAAGACAAACTTA
Found at i:26289451 original size:20 final size:20
Alignment explanation
Indices: 26289426--26289480 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
26289416 TAACACATGT
26289426 ATTAAATTAAGACAAACTTA
1 ATTAAATTAAGACAAACTTA
* * *
26289446 ATTAAATCAAGACATATTTA
1 ATTAAATTAAGACAAACTTA
* *
26289466 ATTTAACTAAGACAA
1 ATTAAATTAAGACAA
26289481 GACAAATTAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.31
Consensus pattern (20 bp):
ATTAAATTAAGACAAACTTA
Found at i:26293067 original size:30 final size:28
Alignment explanation
Indices: 26293033--26293088 Score: 69
Period size: 30 Copynumber: 1.9 Consensus size: 28
26293023 GTCATTAAAT
26293033 AAAATCGACA-CAAGCAGAATTTAAAAGAAA
1 AAAATCGACATCAAG-A-AA-TTAAAAGAAA
*
26293063 AAAATTGACATCAAGAAATTAAAAGA
1 AAAATCGACATCAAGAAATTAAAAGA
26293089 TAAGTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 10 0.42
31 4 0.17
ACGTcount: A:0.61, C:0.11, G:0.12, T:0.16
Consensus pattern (28 bp):
AAAATCGACATCAAGAAATTAAAAGAAA
Found at i:26297404 original size:64 final size:64
Alignment explanation
Indices: 26297327--26297454 Score: 213
Period size: 64 Copynumber: 2.0 Consensus size: 64
26297317 GGCATATCTG
*
26297327 GATCTATTTTATTAGAGTCAGAAGTGTACTCACCATTATCTTTC-GTAAGAAGTAATCTCGTGTT
1 GATCTATTTTATTAGAGTCAGAAGTGTACTCACCATTATCTTTCAG-AAGAAGTAATCTCATGTT
**
26297391 GATCTATTTTATTAGAGTTGGAAGTGTACTCACCATTATCTTTCAGAAGAAGTAATCTCATGTT
1 GATCTATTTTATTAGAGTCAGAAGTGTACTCACCATTATCTTTCAGAAGAAGTAATCTCATGTT
26297455 AGGGCATTCC
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 59 0.98
65 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (64 bp):
GATCTATTTTATTAGAGTCAGAAGTGTACTCACCATTATCTTTCAGAAGAAGTAATCTCATGTT
Found at i:26300310 original size:19 final size:19
Alignment explanation
Indices: 26300286--26300323 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
26300276 TAAGTAGGGG
26300286 TGGACT-TCTTGATTGGGCT
1 TGGACTATCTT-ATTGGGCT
26300305 TGGACTCATCTTATTGGGC
1 TGGACT-ATCTTATTGGGC
26300324 CTTGCCTTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.13, C:0.18, G:0.29, T:0.39
Consensus pattern (19 bp):
TGGACTATCTTATTGGGCT
Found at i:26308333 original size:10 final size:10
Alignment explanation
Indices: 26308315--26308358 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
26308305 TCATTACAGT
*
26308315 ATTGTAAAAA
1 ATTGAAAAAA
26308325 ATTGAAAAAAA
1 ATTG-AAAAAA
*
26308336 ATCGAAAAAA
1 ATTGAAAAAA
*
26308346 ATCGAAAAAA
1 ATTGAAAAAA
26308356 ATT
1 ATT
26308359 AATTTTAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
10 22 0.73
11 8 0.27
ACGTcount: A:0.66, C:0.05, G:0.09, T:0.20
Consensus pattern (10 bp):
ATTGAAAAAA
Found at i:26308336 original size:11 final size:11
Alignment explanation
Indices: 26308320--26308356 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
26308310 ACAGTATTGT
*
26308320 AAAAAATTGAA
1 AAAAAATCGAA
26308331 AAAAAATCG-A
1 AAAAAATCGAA
26308341 AAAAAATCGAA
1 AAAAAATCGAA
26308352 AAAAA
1 AAAAA
26308357 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.76, C:0.05, G:0.08, T:0.11
Consensus pattern (11 bp):
AAAAAATCGAA
Found at i:26309279 original size:20 final size:20
Alignment explanation
Indices: 26309249--26309314 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
26309239 AATCTTGAAT
26309249 GAAATTGAGAGAAGAAAAAAA
1 GAAA-TGAGAGAAGAAAAAAA
*
26309270 GAAATGAGAGAAAAAGAAAAA
1 GAAATGAGAGAAGAA-AAAAA
* *
26309291 GAAAATGAGAG-TGACAAAAA
1 G-AAATGAGAGAAGAAAAAAA
26309311 GAAA
1 GAAA
26309315 AAAGAATTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 3 0.08
20 16 0.41
21 11 0.28
22 9 0.23
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.08
Consensus pattern (20 bp):
GAAATGAGAGAAGAAAAAAA
Found at i:26309289 original size:22 final size:24
Alignment explanation
Indices: 26309264--26309320 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 24
26309254 TGAGAGAAGA
26309264 AAAAAAGAAATGAGA-G-AAAAAG
1 AAAAAAGAAATGAGAGGAAAAAAG
26309286 -AAAAAGAAAATGAGAGTGACAAAAAG
1 AAAAAAG-AAATGAGAG-GA-AAAAAG
26309312 AAAAAAGAA
1 AAAAAAGAA
26309321 TTTGAGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
21 6 0.21
22 8 0.28
24 1 0.03
26 8 0.28
27 6 0.21
ACGTcount: A:0.72, C:0.02, G:0.21, T:0.05
Consensus pattern (24 bp):
AAAAAAGAAATGAGAGGAAAAAAG
Found at i:26309331 original size:6 final size:6
Alignment explanation
Indices: 26309322--26309351 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
26309312 AAAAAAGAAT
*
26309322 TTGAGA TTGAGA TCGAGA TTGAGA TTGAGA
1 TTGAGA TTGAGA TTGAGA TTGAGA TTGAGA
26309352 AAAAAATTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.03, G:0.33, T:0.30
Consensus pattern (6 bp):
TTGAGA
Found at i:26311050 original size:19 final size:20
Alignment explanation
Indices: 26311003--26311040 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26310993 AACATTTTCG
26311003 ATTCAGCTCATTCGAGCTCA
1 ATTCAGCTCATTCGAGCTCA
26311023 ATTCAGCTCATT-GAGCTC
1 ATTCAGCTCATTCGAGCTC
26311041 GTATTAGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (20 bp):
ATTCAGCTCATTCGAGCTCA
Found at i:26313310 original size:33 final size:35
Alignment explanation
Indices: 26313259--26313334 Score: 111
Period size: 34 Copynumber: 2.2 Consensus size: 35
26313249 AGATTTAAAC
*
26313259 AAATTAATTACTAACACTTAT-TTAAGCTGAACTA
1 AAATTAATTACTAACACTTATCTGAAGCTGAACTA
*
26313293 AAATTAATT-CTAACACTTATCTGGAGCTGAACTA
1 AAATTAATTACTAACACTTATCTGAAGCTGAACTA
*
26313327 AATTTAAT
1 AAATTAAT
26313335 AAACTAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
33 11 0.29
34 27 0.71
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (35 bp):
AAATTAATTACTAACACTTATCTGAAGCTGAACTA
Found at i:26315128 original size:18 final size:18
Alignment explanation
Indices: 26315105--26315139 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26315095 CTTTTTTCTC
26315105 TTTTTCG-TTCTCTTTTTG
1 TTTTTCGATT-TCTTTTTG
26315123 TTTTTCGATTTCTTTTT
1 TTTTTCGATTTCTTTTT
26315140 CTGTCTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.03, C:0.14, G:0.09, T:0.74
Consensus pattern (18 bp):
TTTTTCGATTTCTTTTTG
Found at i:26317741 original size:12 final size:13
Alignment explanation
Indices: 26317718--26317746 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26317708 TGAGTGAAAA
26317718 TTCTCTTTGAGTT
1 TTCTCTTTGAGTT
26317731 TTCTC-TTGAGTT
1 TTCTCTTTGAGTT
26317743 TTCT
1 TTCT
26317747 TTAGAAGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.07, C:0.17, G:0.14, T:0.62
Consensus pattern (13 bp):
TTCTCTTTGAGTT
Found at i:26323913 original size:46 final size:46
Alignment explanation
Indices: 26323862--26323955 Score: 154
Period size: 46 Copynumber: 2.0 Consensus size: 46
26323852 ATAGTGTGGC
*
26323862 GTTCATCATATACCAAGGTTCTTAGCA-TCATTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTAGCATTC-TTGATAGTGGGTCGAG
*
26323908 GTTCATCATATACCAAGGTTCCTATCATTCTTGATAGTGGGTCGAG
1 GTTCATCATATACCAAGGTTCCTAGCATTCTTGATAGTGGGTCGAG
26323954 GT
1 GT
26323956 CTTTTCTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 43 0.96
47 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (46 bp):
GTTCATCATATACCAAGGTTCCTAGCATTCTTGATAGTGGGTCGAG
Found at i:26331828 original size:20 final size:21
Alignment explanation
Indices: 26331796--26331849 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
26331786 TGTTTCTCTC
*
26331796 TCACTTTCCTTTTCACCTTTT
1 TCACTTTCATTTTCACCTTTT
**
26331817 TCA-TTTCATTTTCTTCTTTT
1 TCACTTTCATTTTCACCTTTT
*
26331837 TCACTTTAATTTT
1 TCACTTTCATTTT
26331850 TCTCTTCTCC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.13, C:0.24, G:0.00, T:0.63
Consensus pattern (21 bp):
TCACTTTCATTTTCACCTTTT
Found at i:26342772 original size:14 final size:14
Alignment explanation
Indices: 26342746--26342796 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
26342736 TCCATTGAGT
*
26342746 GAGAAAAAGAAAAA
1 GAGAGAAAGAAAAA
*
26342760 GAGAGAAATAAAAA
1 GAGAGAAAGAAAAA
*
26342774 GAGTGAAAAGAAAAA
1 GAGAG-AAAGAAAAA
*
26342789 GAAAGAAA
1 GAGAGAAA
26342797 AGAATGATGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.04
Consensus pattern (14 bp):
GAGAGAAAGAAAAA
Found at i:26342787 original size:15 final size:15
Alignment explanation
Indices: 26342746--26342800 Score: 69
Period size: 15 Copynumber: 3.8 Consensus size: 15
26342736 TCCATTGAGT
26342746 GAGA-AAAAGAAAAA
1 GAGAGAAAAGAAAAA
*
26342760 GAGAG-AAATAAAAA
1 GAGAGAAAAGAAAAA
*
26342774 GAGTGAAAAGAAAAA
1 GAGAGAAAAGAAAAA
*
26342789 GAAAGAAAAGAA
1 GAGAGAAAAGAA
26342801 TGATGAAAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 16 0.47
15 18 0.53
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.04
Consensus pattern (15 bp):
GAGAGAAAAGAAAAA
Found at i:26344955 original size:17 final size:17
Alignment explanation
Indices: 26344935--26344990 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
26344925 GCGAAAATAC
*
26344935 AAAAGAAAAGAAAAATG
1 AAAAAAAAAGAAAAATG
* *
26344952 AAAAAAAGAAAGAAAATTC
1 -AAAAAA-AAAGAAAAATG
26344971 AAAAAAAAAG-AAAATG
1 AAAAAAAAAGAAAAATG
26344987 AAAA
1 AAAA
26344991 GAAAGCGAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
16 8 0.25
17 4 0.12
18 11 0.34
19 9 0.28
ACGTcount: A:0.79, C:0.02, G:0.12, T:0.07
Consensus pattern (17 bp):
AAAAAAAAAGAAAAATG
Found at i:26344960 original size:20 final size:19
Alignment explanation
Indices: 26344935--26344977 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
26344925 GCGAAAATAC
*
26344935 AAAAGAAAAGAAAAATGAAA
1 AAAAG-AAAGAAAAATCAAA
*
26344955 AAAAGAAAGAAAATTCAAA
1 AAAAGAAAGAAAAATCAAA
26344974 AAAA
1 AAAA
26344978 AAGAAAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.79, C:0.02, G:0.12, T:0.07
Consensus pattern (19 bp):
AAAAGAAAGAAAAATCAAA
Found at i:26345003 original size:36 final size:36
Alignment explanation
Indices: 26344927--26344995 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
26344917 AGAAAAGAGC
*
26344927 GAAAATACAAAAGAAAAGAAAAATGAAAAAAAGAAA
1 GAAAATACAAAAAAAAAGAAAAATGAAAAAAAGAAA
*
26344963 GAAAATTCAAAAAAAAAG-AAAATGAAAAGAAAG
1 GAAAATACAAAAAAAAAGAAAAATGAAAA-AAAG
26344996 CGAGAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 10 0.33
36 20 0.67
ACGTcount: A:0.75, C:0.03, G:0.14, T:0.07
Consensus pattern (36 bp):
GAAAATACAAAAAAAAAGAAAAATGAAAAAAAGAAA
Found at i:26349157 original size:22 final size:21
Alignment explanation
Indices: 26349132--26349176 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
26349122 TGAACCATTA
26349132 CCATACCATTTCGTACCAACTT
1 CCATACCATTTCGTACCAA-TT
*
26349154 CCATACCATTTTGTACCAATT
1 CCATACCATTTCGTACCAATT
26349175 CC
1 CC
26349177 TAAATACCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.27, C:0.36, G:0.04, T:0.33
Consensus pattern (21 bp):
CCATACCATTTCGTACCAATT
Found at i:26351413 original size:27 final size:28
Alignment explanation
Indices: 26351383--26351452 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
26351373 ATATTAAGTC
*
26351383 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26351410 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26351438 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26351453 GAACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26351474 original size:30 final size:29
Alignment explanation
Indices: 26351383--26351481 Score: 107
Period size: 28 Copynumber: 3.5 Consensus size: 29
26351373 ATATTAAGTC
* *
26351383 CGCACACTCAGTGCTATATAAT--CAACT
1 CGCACACTTAGTGCTATACAATCACAACT
*
26351410 CGCACACTTAGTGCTATATAATCA-AACT
1 CGCACACTTAGTGCTATACAATCACAACT
* *
26351438 CGCACACTTAGTGCTGA-ACAATTTACAACC
1 CGCACACTTAGTGCT-ATACAA-TCACAACT
26351468 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26351482 CAATCTCATG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
27 21 0.33
28 22 0.35
29 3 0.05
30 17 0.27
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATCACAACT
Found at i:26359699 original size:27 final size:28
Alignment explanation
Indices: 26359669--26359738 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
26359659 ATATTAAGTC
*
26359669 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26359696 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26359724 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26359739 GAACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26367869 original size:19 final size:20
Alignment explanation
Indices: 26367832--26367869 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
26367822 TGAGCTCAAG
*
26367832 TGAGCTGATTGGAGCTGAAT
1 TGAGCTGATGGGAGCTGAAT
*
26367852 TGAGCT-ATGGGAGTTGAA
1 TGAGCTGATGGGAGCTGAA
26367870 AATGAGCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.26, C:0.08, G:0.37, T:0.29
Consensus pattern (20 bp):
TGAGCTGATGGGAGCTGAAT
Found at i:26371183 original size:33 final size:33
Alignment explanation
Indices: 26371145--26371216 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
26371135 GATTACTCTC
26371145 TTCACTCG-TTTCTTTTACAGACTCTCTTTCTTT
1 TTCACTCGATTTCTTTT-CAGACTCTCTTTCTTT
* *
26371178 TTCACTCGATTTCTTTTCAGGCTCTTTTTCTTT
1 TTCACTCGATTTCTTTTCAGACTCTCTTTCTTT
*
26371211 TCCACT
1 TTCACT
26371217 TTTGTTTTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
33 27 0.77
34 8 0.23
ACGTcount: A:0.11, C:0.28, G:0.07, T:0.54
Consensus pattern (33 bp):
TTCACTCGATTTCTTTTCAGACTCTCTTTCTTT
Found at i:26371337 original size:12 final size:12
Alignment explanation
Indices: 26371295--26371336 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
26371285 TCTTCTTTTT
26371295 TTTCTTTTTC-A
1 TTTCTTTTTCAA
26371306 TTTC--TTTCAA
1 TTTCTTTTTCAA
26371316 TTTCTTTTTCAA
1 TTTCTTTTTCAA
26371328 TGTTCTTTT
1 T-TTCTTTT
26371337 CTCGCTCACG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 4 0.15
10 5 0.19
11 4 0.15
12 7 0.26
13 7 0.26
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:26372394 original size:18 final size:18
Alignment explanation
Indices: 26372365--26372399 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
26372355 TCCAATTATT
26372365 TTTTTTCAAATTTCTTTTG
1 TTTTTTCAAATTT-TTTTG
26372384 TTTTTTC-AATTTTTTT
1 TTTTTTCAAATTTTTTT
26372400 AATTCAATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 5 0.31
19 7 0.44
ACGTcount: A:0.14, C:0.09, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTTTTCAAATTTTTTTG
Found at i:26372475 original size:15 final size:14
Alignment explanation
Indices: 26372454--26372489 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
26372444 ACACCTTGGA
26372454 TTTTTTTTT-GAAT
1 TTTTTTTTTCGAAT
26372467 TTGTTTTTTTCGAAT
1 TT-TTTTTTTCGAAT
26372482 TTTTTTTT
1 TTTTTTTT
26372490 CACAATGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.10
14 13 0.62
15 6 0.29
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.78
Consensus pattern (14 bp):
TTTTTTTTTCGAAT
Found at i:26374806 original size:657 final size:651
Alignment explanation
Indices: 26373511--26374707 Score: 1813
Period size: 657 Copynumber: 1.8 Consensus size: 651
26373501 AAATTTTACA
* * *
26373511 AATTTTGTATGCATTATCGTTGATCCGCTTGAGTACTTGGAAAGGCCCATCGCTCCTTGGGTCCA
1 AATTTTGTATGCATTATCATTGATCCGCTCGAGTACTTGGAAAGGCCCATCGCTCCATGGGTCCA
** *
26373576 ACTTGGTTTTTCTTTTTGTAGGAAATCGTTCTTTCCTCATATGGACCCAAACCCAATCTCTGGGT
66 ACTTGGACTTTCTATTTGTAGGAAATCGTTCTTTCCTCATATGGACCCAAACCCAATCTCTGGGT
* * *
26373641 TCAAGGACAACCTGTTTGCGCCCCTTGTTTACTTTTTTGGTGTTGACATCATTTGTTTTGGCTAT
131 TCAAGGACAACCCGTTTGCGCCCCTTATTTACTTTGTTGGTGTTGACATCATTTGTTTTGGCTAT
**
26373706 TTGTTGCCTAGCCTTCTCGTGTAAGGATTTCACCAACTCAGCTTTCTGTTCGCCATCTAAATTAA
196 TCATTGCCTAGCCTTCTCGTGTAAGGATTTCACCAACTCAGCTTTCTGTTCGCCATCTAAATTAA
*
26373771 CAATATGGTCAAGTGGTAATGGCGCAAGATCAAGTACTGTTAGTGGGTTAAAACCATAAACAAGT
261 CAATATGGTCAAGTGGTAATGGAGCAAGATCAAGTACTGTTAGTGGGTTAAAACCATAAACAAGT
* * * *
26373836 TCAAATGGAGAATAACCAGTTGTAGAATGATTAGATCTATTATATGCAAATTCGAAAAATGGTAG
326 TCAAATGGAGAATAACCAGTTGTAGAATGAATAGATCTATTATATACAAATTCGAAAAATGGCAA
* * *
26373901 ATATTCTTCCCAATTTTTAATGTTCTTTCCCACAACAGATCGTAATAAGGCTCTTAAGATTCGAT
391 ACATTCTTCCCAATTTTTAATGTTCTTTCCCACAACAGATCGTAATAAGGCTCCTAAAATTCGAT
* * *
26373966 TAACTACCTCAGTTTGGCCATCGGTGTGGGGGTGACATGCAGTTGAATAAAGTAATTTTGTACCA
456 TAACTACCTCAGTTTGGCCATCGGTGTGGGGGTGACAAGCAGTAGAATAAAGTAATTTCGTACCA
* * * *
26374031 AGCTTACCCCACAATACCTTTGTGACACGTATCATTCCCCCTTCCTCAAAAAGATTCGTCCTTGA
521 AGCTTACCCCACAATACCTTAGTGACACGGA-CATTCCACATTCCTCAAAAAGATTCG--CTT--
* * *
26374096 ATCTAAAAAATCAAATGGAGATAAGTCAGCCACATTGAAAGTAGAACTTACATTGTACTCACCAA
581 ATCTAAAAAATCAAATGAAGAT-ACTCAGCCACATTAAAAGTAGAACTTACATTGTACTCACCAA
26374161 GTAGATC
645 GTAGATC
*
26374168 AATTTTGTATGCATTATCATTGATCCGCTCGAGTACTTGGAAAGGCCCATTGC-CTCATGGGTCC
1 AATTTTGTATGCATTATCATTGATCCGCTCGAGTACTTGGAAAGGCCCATCGCTC-CATGGGTCC
*
26374232 AACTTGGACTTTCTATTTGTAGGAAATCGTTCTTTCCTCATATGGACCCAAACCCAATCTCTTGG
65 AACTTGGACTTTCTATTTGTAGGAAATCGTTCTTTCCTCATATGGACCCAAACCCAATCTCTGGG
* * * **
26374297 TTCAAGGACAGCCCGTTTGCGCCCTTTATTTGCTTTGTTGGTGTTGATGTCATTTGTTTTGGCTA
130 TTCAAGGACAACCCGTTTGCGCCCCTTATTTACTTTGTTGGTGTTGACATCATTTGTTTTGGCTA
* * *
26374362 TTCATTGCCTAGCCTTCTCGTGTAATGATTTCACCAGCTTAGCTTTCTGTTCGCCATCTAAATTA
195 TTCATTGCCTAGCCTTCTCGTGTAAGGATTTCACCAACTCAGCTTTCTGTTCGCCATCTAAATTA
* * * * * **
26374427 ACAATATGTTCTAGTTGTAATGGAGTAAGGTCAAGTACTGTTAGTGGGTTAAAACCATAAACTTG
260 ACAATATGGTCAAGTGGTAATGGAGCAAGATCAAGTACTGTTAGTGGGTTAAAACCATAAACAAG
* *
26374492 TTCAAATGGTGAATAGCCAGTTGTAGAATGAATAGATCTATTATATACAAATTC-AACAAATGGC
325 TTCAAATGGAGAATAACCAGTTGTAGAATGAATAGATCTATTATATACAAATTCGAA-AAATGGC
* *
26374556 AAACATTCTTTCCACTTTTTAATGTTCTTTCCCACAACAGATCGTAATAAGGCTCCTAAAATTCG
389 AAACATTCTTCCCAATTTTTAATGTTCTTTCCCACAACAGATCGTAATAAGGCTCCTAAAATTCG
* * * * *
26374621 ATTGACTACTTCAGTTTGGCCATCGGTTTGGGGGTGACAAGTAGTAGAATATAGTAATTTCGTAC
454 ATTAACTACCTCAGTTTGGCCATCGGTGTGGGGGTGACAAGCAGTAGAATAAAGTAATTTCGTAC
26374686 CAAGCTTACCCCACAATACCTT
519 CAAGCTTACCCCACAATACCTT
26374708 CCAAAAGTGG
Statistics
Matches: 490, Mismatches: 48, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
656 3 0.01
657 487 0.99
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (651 bp):
AATTTTGTATGCATTATCATTGATCCGCTCGAGTACTTGGAAAGGCCCATCGCTCCATGGGTCCA
ACTTGGACTTTCTATTTGTAGGAAATCGTTCTTTCCTCATATGGACCCAAACCCAATCTCTGGGT
TCAAGGACAACCCGTTTGCGCCCCTTATTTACTTTGTTGGTGTTGACATCATTTGTTTTGGCTAT
TCATTGCCTAGCCTTCTCGTGTAAGGATTTCACCAACTCAGCTTTCTGTTCGCCATCTAAATTAA
CAATATGGTCAAGTGGTAATGGAGCAAGATCAAGTACTGTTAGTGGGTTAAAACCATAAACAAGT
TCAAATGGAGAATAACCAGTTGTAGAATGAATAGATCTATTATATACAAATTCGAAAAATGGCAA
ACATTCTTCCCAATTTTTAATGTTCTTTCCCACAACAGATCGTAATAAGGCTCCTAAAATTCGAT
TAACTACCTCAGTTTGGCCATCGGTGTGGGGGTGACAAGCAGTAGAATAAAGTAATTTCGTACCA
AGCTTACCCCACAATACCTTAGTGACACGGACATTCCACATTCCTCAAAAAGATTCGCTTATCTA
AAAAATCAAATGAAGATACTCAGCCACATTAAAAGTAGAACTTACATTGTACTCACCAAGTAGAT
C
Found at i:26378666 original size:59 final size:58
Alignment explanation
Indices: 26378603--26378790 Score: 157
Period size: 59 Copynumber: 3.2 Consensus size: 58
26378593 ATTTTATTAA
*
26378603 ATCATATATTTTAATTAAAATATATTTAATAATAACTATGTTAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAA-TATGTTAAATTATATTTTATAGT
* * ** * * * * * *
26378662 ATCATATATTATGATTTGAGTAAATTCATATAAGAATA--TTAATTATTAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTA-ATAATAATATGTTAA--ATTA-TATTTTA-TAGT
* * * *
26378722 ATTATATATGTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATAATAA-TATGTTAAATTATATTTTATAGT
26378781 ATCATATATT
1 ATCATATATT
26378791 ATGATTTGAG
Statistics
Matches: 94, Mismatches: 26, Indels: 18
0.68 0.19 0.13
Matches are distributed among these distances:
57 4 0.04
58 2 0.02
59 47 0.50
60 35 0.37
61 2 0.02
62 4 0.04
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.49
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATTTAATAATAATATGTTAAATTATATTTTATAGT
Found at i:26378756 original size:15 final size:16
Alignment explanation
Indices: 26378725--26378766 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
26378715 TTATTAAATT
*
26378725 ATATATGTTAATTATA
1 ATATATGTTAATAATA
26378741 ATATAT-TTAATAATA
1 ATATATGTTAATAATA
26378756 AT-TATGTTAAT
1 ATATATGTTAAT
26378767 TTATATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 3 0.12
15 15 0.62
16 6 0.25
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
ATATATGTTAATAATA
Found at i:26378776 original size:119 final size:120
Alignment explanation
Indices: 26378533--26378888 Score: 624
Period size: 119 Copynumber: 3.0 Consensus size: 120
26378523 ATCAGTTTTC
*
26378533 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATAAAAGAATATTAATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
* * * *
26378598 ATTAAATCATATATTTTAATTAAAATATATTTAATAATAACTATGTTAAATTATC
66 ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATA
26378653 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATT-AGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
* *
26378717 ATTAAATTATATATGTTAATTATAATATATTTAATAATAATTATGTTAATTTATA
66 ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATA
26378772 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
1 TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
*
26378837 ATTAAATTATATATTTTAATTATAATATATTTAATAGTAATTATGTTTAAAT
66 ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
26378889 ATGATTAAAT
Statistics
Matches: 224, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
119 113 0.50
120 106 0.47
121 5 0.02
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (120 bp):
TTTTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTT
ATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAAATTATA
Found at i:26379123 original size:16 final size:16
Alignment explanation
Indices: 26379102--26379169 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
26379092 GATTTGCTAT
26379102 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26379118 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
26379134 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
26379150 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26379166 TACA
1 TACA
26379170 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26382081 original size:27 final size:27
Alignment explanation
Indices: 26382051--26382228 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26382041 ATATTGAGTC
* * * *
26382051 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26382078 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26382105 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26382133 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26382160 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26382187 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26382214 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26382229 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26382190 original size:82 final size:81
Alignment explanation
Indices: 26382072--26382227 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26382062 TGCTATATAA
* *
26382072 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26382137 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26382154 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26382218 CACTTAGTGC
65 CACTTAGTGC
26382228 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26390057 original size:27 final size:27
Alignment explanation
Indices: 26390027--26390204 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26390017 ATATTGAGTC
* * * *
26390027 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26390054 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26390081 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26390109 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26390136 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26390163 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26390190 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26390205 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26390166 original size:82 final size:81
Alignment explanation
Indices: 26390048--26390203 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26390038 TGCTATATAA
* *
26390048 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26390113 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26390130 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26390194 CACTTAGTGC
65 CACTTAGTGC
26390204 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26393061 original size:13 final size:12
Alignment explanation
Indices: 26393045--26393089 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
26393035 TAAAAAAATC
26393045 AAAAAAAATTGA
1 AAAAAAAATTGA
*
26393057 AAAAAGAATTCGA
1 AAAAAAAATT-GA
*
26393070 AAAAAAAATTCA
1 AAAAAAAATTGA
26393082 AAAAAAAA
1 AAAAAAAA
26393090 GTTTGTATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 18 0.62
13 11 0.38
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (12 bp):
AAAAAAAATTGA
Found at i:26394079 original size:15 final size:16
Alignment explanation
Indices: 26394059--26394090 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
26394049 AGAAAATGAA
26394059 AAAGAAAAAGAA-ATG
1 AAAGAAAAAGAAGATG
26394074 AAAGAAAAAGAAGATG
1 AAAGAAAAAGAAGATG
26394090 A
1 A
26394091 GTGTGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAGATG
Done.