Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 85 of 211
Found at i:26394104 original size:51 final size:50
Alignment explanation
Indices: 26394010--26394110 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 50
26394000 AAAAAGTGCG
*
26394010 AGAAAAAGAAATCGAAAGAAAAGAAGAAGAGTGCAAGCGAGAAAATGAAAA
1 AGAAAAAGAAATCGAAAGAAAAGAAGAAGAGTGCAAGAGAGAAAA-GAAAA
* ** *
26394061 AGAAAAAGAAAT-GAAAGAAAAAGAAGATGAGTGTGAGATAGAAAAGAAAA
1 AGAAAAAGAAATCGAAAG-AAAAGAAGAAGAGTGCAAGAGAGAAAAGAAAA
26394111 TTGAAAATGA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
50 10 0.23
51 34 0.77
ACGTcount: A:0.63, C:0.03, G:0.26, T:0.08
Consensus pattern (50 bp):
AGAAAAAGAAATCGAAAGAAAAGAAGAAGAGTGCAAGAGAGAAAAGAAAA
Found at i:26394209 original size:54 final size:54
Alignment explanation
Indices: 26394100--26394212 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
26394090 AGTGTGAGAT
* * * * *
26394100 AGAAAAGAAAATTGAAAATGAGATTGAGATTGAGAATAAAAATGAGTGTGAAAA
1 AGAAAAGAAAACTGAAAAAGAGATTGAGAATGAGAATAAAAACGAGAGTGAAAA
* *
26394154 AGAAAAGAAAACTGAAAAAGAGATTGAGAATGAAGAA-AGAAACGAGAGTGCAAA
1 AGAAAAGAAAACTGAAAAAGAGATTGAGAATG-AGAATAAAAACGAGAGTGAAAA
26394208 AGAAA
1 AGAAA
26394213 TGAGTGATAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 47 0.92
55 4 0.08
ACGTcount: A:0.58, C:0.03, G:0.25, T:0.14
Consensus pattern (54 bp):
AGAAAAGAAAACTGAAAAAGAGATTGAGAATGAGAATAAAAACGAGAGTGAAAA
Found at i:26397188 original size:10 final size:10
Alignment explanation
Indices: 26397169--26397226 Score: 75
Period size: 10 Copynumber: 6.0 Consensus size: 10
26397159 CACAAGTCAT
*
26397169 TGTAATGATA
1 TGTAACGATA
26397179 TGTAACGATA
1 TGTAACGATA
*
26397189 T-TCAC-ATA
1 TGTAACGATA
26397197 TGTAACGATA
1 TGTAACGATA
*
26397207 TGTAACAATA
1 TGTAACGATA
26397217 TGTAACGATA
1 TGTAACGATA
26397227 CCAGGTTCGA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
8 4 0.10
9 6 0.15
10 31 0.76
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.33
Consensus pattern (10 bp):
TGTAACGATA
Found at i:26397199 original size:18 final size:20
Alignment explanation
Indices: 26397176--26397226 Score: 79
Period size: 18 Copynumber: 2.6 Consensus size: 20
26397166 CATTGTAATG
*
26397176 ATATGTAACGATAT-TCAC-
1 ATATGTAACGATATGTAACA
26397194 ATATGTAACGATATGTAACA
1 ATATGTAACGATATGTAACA
26397214 ATATGTAACGATA
1 ATATGTAACGATA
26397227 CCAGGTTCGA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
18 14 0.47
19 3 0.10
20 13 0.43
ACGTcount: A:0.43, C:0.12, G:0.14, T:0.31
Consensus pattern (20 bp):
ATATGTAACGATATGTAACA
Found at i:26398497 original size:14 final size:14
Alignment explanation
Indices: 26398464--26398497 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26398454 CTTCGTACTC
26398464 TTTTTTTTATTCTT
1 TTTTTTTTATTCTT
**
26398478 AATTTTTTATTCTT
1 TTTTTTTTATTCTT
26398492 TTTTTT
1 TTTTTT
26398498 CGTAATTTCC
Statistics
Matches: 16, Mismatches: 4, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTTATTCTT
Found at i:26398516 original size:23 final size:23
Alignment explanation
Indices: 26398461--26398516 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
26398451 TTACTTCGTA
* *
26398461 CTCTTTTTTTTATTCTTAATTTT
1 CTCTTTTTTTTATTCGTAATTTC
* *
26398484 TTATTCTTTTTT-TTCGTAATTTC
1 CTCTT-TTTTTTATTCGTAATTTC
26398507 CTCTTTTTTT
1 CTCTTTTTTT
26398517 CAATTACAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
22 5 0.19
23 15 0.58
24 6 0.23
ACGTcount: A:0.11, C:0.14, G:0.02, T:0.73
Consensus pattern (23 bp):
CTCTTTTTTTTATTCGTAATTTC
Found at i:26399974 original size:19 final size:20
Alignment explanation
Indices: 26399950--26399987 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
26399940 TGAGCTGATT
26399950 GGAGCTGAAA-TGAGCTAAG
1 GGAGCTGAAATTGAGCTAAG
26399969 GGAGCTGAAATTGAGCTAA
1 GGAGCTGAAATTGAGCTAA
26399988 ATTCAGAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.37, C:0.11, G:0.34, T:0.18
Consensus pattern (20 bp):
GGAGCTGAAATTGAGCTAAG
Found at i:26400961 original size:20 final size:19
Alignment explanation
Indices: 26400936--26400973 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
26400926 AACATTTTCG
26400936 ATTCAGCTCATTCGAGCTCA
1 ATTCAGCTCATT-GAGCTCA
*
26400956 ATTCAGCTTATTGAGCTC
1 ATTCAGCTCATTGAGCTC
26400974 GTATTAGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (19 bp):
ATTCAGCTCATTGAGCTCA
Found at i:26404386 original size:10 final size:10
Alignment explanation
Indices: 26404366--26404409 Score: 61
Period size: 10 Copynumber: 4.3 Consensus size: 10
26404356 TCATTACGGT
*
26404366 ATTGTAAAAA
1 ATTGAAAAAA
*
26404376 ATCGAAAAAA
1 ATTGAAAAAA
26404386 ATTGAAAAAAA
1 ATTG-AAAAAA
26404397 ATTGAAAAAA
1 ATTGAAAAAA
26404407 ATT
1 ATT
26404410 TAATTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
10 20 0.67
11 10 0.33
ACGTcount: A:0.66, C:0.02, G:0.09, T:0.23
Consensus pattern (10 bp):
ATTGAAAAAA
Found at i:26404394 original size:11 final size:11
Alignment explanation
Indices: 26404371--26404407 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
26404361 ACGGTATTGT
*
26404371 AAAAAATCG-A
1 AAAAAATTGAA
26404381 AAAAAATTGAA
1 AAAAAATTGAA
26404392 AAAAAATTGAA
1 AAAAAATTGAA
26404403 AAAAA
1 AAAAA
26404408 TTTAATTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.76, C:0.03, G:0.08, T:0.14
Consensus pattern (11 bp):
AAAAAATTGAA
Found at i:26405328 original size:20 final size:20
Alignment explanation
Indices: 26405298--26405363 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
26405288 AATCTTGAAT
26405298 GAAATTGAGAGAAGAAAAAAA
1 GAAA-TGAGAGAAGAAAAAAA
*
26405319 GAAATGAGAGAAAAAGAAAAA
1 GAAATGAGAGAAGAA-AAAAA
* *
26405340 GAAAATGAGAG-TGAGAAAAA
1 G-AAATGAGAGAAGAAAAAAA
26405360 GAAA
1 GAAA
26405364 AAAGAATTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 3 0.08
20 16 0.41
21 11 0.28
22 9 0.23
ACGTcount: A:0.67, C:0.00, G:0.26, T:0.08
Consensus pattern (20 bp):
GAAATGAGAGAAGAAAAAAA
Found at i:26405336 original size:26 final size:25
Alignment explanation
Indices: 26405307--26405366 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
26405297 TGAAATTGAG
26405307 AGAAGAAAAAAA-GAAATGAGAGAAAA
1 AGAA-AAAAAAATGAAA-GAGAGAAAA
* *
26405333 AGAAAAAGAAAATGAGAGTGAGAAAA
1 AGAAAAA-AAAATGAAAGAGAGAAAA
26405359 AGAAAAAA
1 AGAAAAAA
26405367 GAATTTGAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 4 0.13
26 23 0.77
27 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (25 bp):
AGAAAAAAAAATGAAAGAGAGAAAA
Found at i:26407094 original size:19 final size:20
Alignment explanation
Indices: 26407047--26407084 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26407037 AACATTTTCG
26407047 ATTCAGCTCATTCGAGCTCA
1 ATTCAGCTCATTCGAGCTCA
26407067 ATTCAGCTCATT-GAGCTC
1 ATTCAGCTCATTCGAGCTC
26407085 GTATTAGCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (20 bp):
ATTCAGCTCATTCGAGCTCA
Found at i:26410148 original size:24 final size:24
Alignment explanation
Indices: 26410124--26410170 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
26410114 AAACTACTTC
26410124 TAAAAAAAACTCAAGAGAGAATTCT
1 TAAAAAAAACTCAA-AGAGAATTCT
** *
26410149 TGGAGAAAACTCAAAGAGAATT
1 TAAAAAAAACTCAAAGAGAATT
26410171 TTTCACTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:26411316 original size:33 final size:34
Alignment explanation
Indices: 26411265--26411339 Score: 116
Period size: 33 Copynumber: 2.2 Consensus size: 34
26411255 AAATTTAAAC
26411265 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
* *
26411299 AAATTAATT-CTAACACTTATTTGAGCTGAATTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
26411332 AATTTAAT
1 AAATTAAT
26411340 AAACTAACTC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
33 29 0.76
34 9 0.24
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.39
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:26413132 original size:18 final size:18
Alignment explanation
Indices: 26413109--26413146 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
26413099 TATTTTTGCC
26413109 CTTTTTC-ATTCTCTTTTT
1 CTTTTTCGATT-TCTTTTT
26413127 CTTTTTCGATTTCTTTTT
1 CTTTTTCGATTTCTTTTT
26413145 CT
1 CT
26413147 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.05, C:0.21, G:0.03, T:0.71
Consensus pattern (18 bp):
CTTTTTCGATTTCTTTTT
Found at i:26415118 original size:24 final size:24
Alignment explanation
Indices: 26415094--26415140 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
26415084 AAACTACTTC
26415094 TAAAAAAAACTCAAGAGAGAATTCT
1 TAAAAAAAACTCAA-AGAGAATTCT
** *
26415119 TGGAGAAAACTCAAAGAGAATT
1 TAAAAAAAACTCAAAGAGAATT
26415141 TTTCACTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (24 bp):
TAAAAAAAACTCAAAGAGAATTCT
Found at i:26420670 original size:39 final size:40
Alignment explanation
Indices: 26420569--26420792 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
26420559 TTGAATGATG
* * *
26420569 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
26420608 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
26420649 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
26420689 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
26420728 TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
26420766 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26420793 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 68 0.43
40 81 0.51
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26420708 original size:79 final size:79
Alignment explanation
Indices: 26420573--26420792 Score: 259
Period size: 79 Copynumber: 2.8 Consensus size: 79
26420563 ATGATGTCCG
* * * * * *
26420573 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGT
*
26420636 GCGAGATACTAATTCC
64 GCGAGATACTAAATCC
* *
26420652 GGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATTCGGGTTAAGTCCCGAAGGCATTTGT
1 -GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGT
*
26420715 GCGAGTTACTAAATCC
64 GCGAGATACTAAATCC
* * *
26420731 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
26420793 AACGAGGAGC
Statistics
Matches: 120, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
78 8 0.07
79 97 0.81
80 15 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGATACTAAATCC
Found at i:26420810 original size:79 final size:79
Alignment explanation
Indices: 26420576--26420825 Score: 224
Period size: 79 Copynumber: 3.2 Consensus size: 79
26420566 ATGTCCGGGC
* * * * * * **
26420576 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATTTGAACG
* *
26420639 AGAT-ACTAATTCCGGGC
64 AG-TGACTAAATCC-GGT
* * **
26420656 TAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATTCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
*
26420720 TTACTAAATCCGGT
66 TGACTAAATCCGGT
* *
26420734 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGA
1 TAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGA
*
26420798 G-GAGCTATATCCGGT
65 GTGA-CTAAATCCGGT
* *
26420813 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
26420826 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
78 9 0.06
79 123 0.85
80 12 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG
TGACTAAATCCGGT
Found at i:26428593 original size:78 final size:80
Alignment explanation
Indices: 26428455--26428677 Score: 276
Period size: 78 Copynumber: 2.8 Consensus size: 80
26428445 TTGAATGATG
* * * * * *
26428455 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT--CGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
26428517 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
26428534 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
*
26428597 GTGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
26428612 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
26428677 G
66 G
26428678 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
76 1 0.01
77 8 0.06
78 49 0.40
79 42 0.34
80 24 0.19
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:26428629 original size:40 final size:40
Alignment explanation
Indices: 26428455--26428677 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
26428445 TTGAATGATG
* * * *
26428455 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26428495 TCCGGACTAAGAT--CGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26428534 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26428573 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26428612 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26428653 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26428678 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 8 0.05
39 74 0.46
40 76 0.47
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26428699 original size:79 final size:79
Alignment explanation
Indices: 26428508--26428710 Score: 225
Period size: 79 Copynumber: 2.6 Consensus size: 79
26428498 GGACTAAGAT
** * *
26428508 CGAAGGCATTTGTGCGAGAT-ACTAATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA
1 CGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA
* *
26428571 AATCGGGTTAAGTCC
65 AACCGGGCTAAGTCC
** * *
26428586 CGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-
*
26428651 AACCGGGCTATGTCC
65 AACCGGGCTAAGTCC
* * *
26428666 CGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
26428711 TACGTGATTT
Statistics
Matches: 109, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
77 1 0.01
78 33 0.30
79 40 0.37
80 35 0.32
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (79 bp):
CGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAA
ACCGGGCTAAGTCC
Found at i:26446010 original size:47 final size:47
Alignment explanation
Indices: 26445956--26446277 Score: 482
Period size: 47 Copynumber: 6.8 Consensus size: 47
26445946 TATTCATTGG
26445956 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
*
26446003 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 AATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC
* *
26446052 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACC
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
*
26446099 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 AATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC
* *
26446148 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
* * * *
26446195 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
* * * *
26446242 AACGTGAGGGATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26446278 TCCCGAAGGG
Statistics
Matches: 252, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 163 0.65
49 89 0.35
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC
Found at i:26446080 original size:96 final size:96
Alignment explanation
Indices: 26445957--26446277 Score: 520
Period size: 96 Copynumber: 3.4 Consensus size: 96
26445947 ATTCATTGGA
26445957 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
26446022 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
*
26446053 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
26446118 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
* *
26446149 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
* * * * *
26446214 TG--TATATATGTGACAGGGCCGAGTGGCCA
66 TGTATATATATGTGATAAGGCCTAATGGCCG
* * * *
26446243 ACGTGAGGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26446278 TCCCGAAGGG
Statistics
Matches: 212, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
94 53 0.25
96 159 0.75
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:26446214 original size:143 final size:144
Alignment explanation
Indices: 26445956--26446277 Score: 519
Period size: 143 Copynumber: 2.3 Consensus size: 144
26445946 TATTCATTGG
26445956 AATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
26446019 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
66 AAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26446084 TAAGGCCGAATGACC
130 CAAGGCCGAATGACC
* *
26446099 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
26446164 AAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
66 AAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
* * *
26446228 AGGGCCGAGTGGCC
131 AAGGCCGAATGACC
* * *
26446242 AACGTGAGGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
26446278 TCCCGAAGGG
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
141 10 0.06
142 1 0.01
143 112 0.67
145 45 0.27
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (144 bp):
AATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
AAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAC
AAGGCCGAATGACC
Found at i:26447365 original size:36 final size:36
Alignment explanation
Indices: 26447325--26447398 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
26447315 TAATGTTATA
26447325 ATCATTTGGTATGGATATGGTTATTGAGAGGTGTGG
1 ATCATTTGGTATGGATATGGTTATTGAGAGGTGTGG
26447361 ATCATTTGGTATGGATATGGTTATTGAGAGGTGTGG
1 ATCATTTGGTATGGATATGGTTATTGAGAGGTGTGG
26447397 AT
1 AT
26447399 ATGCTTAACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.23, C:0.03, G:0.35, T:0.39
Consensus pattern (36 bp):
ATCATTTGGTATGGATATGGTTATTGAGAGGTGTGG
Found at i:26457026 original size:40 final size:40
Alignment explanation
Indices: 26456942--26457165 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
26456932 TTGAATGATG
* * * *
26456942 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26456982 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26457022 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26457061 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26457101 TCCGGGTTAAGTCCCGAAGGCATTT-TGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26457141 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26457166 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
39 68 0.42
40 87 0.53
41 8 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26457078 original size:79 final size:79
Alignment explanation
Indices: 26456942--26457165 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 79
26456932 TTGAATGATG
* * * * * *
26456942 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCATT
*
26457006 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
*
26457022 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
*
26457086 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * *
26457101 TCCGGGTTAAGTCCCGAAGGCATTTTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTT
26457165 G
65 G
26457166 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 97 0.76
80 29 0.23
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:26457183 original size:79 final size:80
Alignment explanation
Indices: 26456942--26457198 Score: 233
Period size: 79 Copynumber: 3.2 Consensus size: 80
26456932 TTGAATGATG
* * * * * * *
26456942 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
** *
26457005 TTGTGCGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
26457022 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
26457086 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
26457101 TCCGGGTTAAGTCCCGAAGGCATT-TTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
26457164 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
26457180 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26457199 TACGTGATTT
Statistics
Matches: 153, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
78 17 0.11
79 105 0.69
80 31 0.20
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:26467750 original size:18 final size:18
Alignment explanation
Indices: 26467729--26467773 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
26467719 AATCTCACTC
26467729 TCTTTTTCTTTTTCAATG
1 TCTTTTTCTTTTTCAATG
*
26467747 TCTTTTTCTTTTTCAATT
1 TCTTTTTCTTTTTCAATG
26467765 TCTTTTTCT
1 TCTTTTTCT
26467774 CTCGTCTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (18 bp):
TCTTTTTCTTTTTCAATG
Found at i:26470068 original size:33 final size:33
Alignment explanation
Indices: 26470031--26470126 Score: 93
Period size: 33 Copynumber: 3.2 Consensus size: 33
26470021 TGAGTTAATG
*
26470031 CATGACTTCATTTAATGATGCAAACTTAACTAA
1 CATGACTTAATTTAATGATGCAAACTTAACTAA
* *
26470064 CATGA---AAGTT-A-CAT---AA-TTAAACTAA
1 CATGACTTAATTTAATGATGCAAACTT-AACTAA
26470089 CATGACTTAATTTAATGATGCAAACTTAACTAA
1 CATGACTTAATTTAATGATGCAAACTTAACTAA
26470122 CATGA
1 CATGA
26470127 AAGTTACATA
Statistics
Matches: 48, Mismatches: 5, Indels: 20
0.66 0.07 0.27
Matches are distributed among these distances:
24 2 0.04
25 13 0.27
28 6 0.12
29 2 0.04
30 5 0.10
33 18 0.38
34 2 0.04
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (33 bp):
CATGACTTAATTTAATGATGCAAACTTAACTAA
Found at i:26476083 original size:19 final size:19
Alignment explanation
Indices: 26476047--26476090 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
26476037 ATCATGTACA
*
26476047 TATTTTTTACATAATTAAAT
1 TATTTTATACATAATT-AAT
*
26476067 TATTTTATA-ATATTTAAT
1 TATTTTATACATAATTAAT
26476085 TATTTT
1 TATTTT
26476091 TCGACAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
19 5 0.23
20 8 0.36
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTTTATACATAATTAAT
Found at i:26478264 original size:76 final size:79
Alignment explanation
Indices: 26478121--26478342 Score: 269
Period size: 77 Copynumber: 2.8 Consensus size: 79
26478111 TTGAATGATG
* * * *
26478121 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTA-CATAACCGGGCTAAG-TCCCGAAGGCAT
26478184 TTGTGCGAGATACTAAA
63 TTGTGCGAGATACTAAA
*
26478201 TCC-GGCTAAGAT-CCGAAGGCATTTGTGCGAGA-TAC-TAATCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-ATTACATAACCGGGCTAAGTCCCGAAGGCATT
*
26478261 TGTGCGAGTTACTAAA
64 TGTGCGAGATACTAAA
* *
26478277 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTAC-ATAACCGGGCTAAGTCCCGAAGGCATTT
26478342 G
65 G
26478343 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 9, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
76 31 0.25
77 37 0.30
78 1 0.01
79 27 0.22
80 26 0.21
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:26478306 original size:40 final size:40
Alignment explanation
Indices: 26478121--26478342 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
26478111 TTGAATGATG
* * * *
26478121 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
26478161 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26478201 TCC-GGCTAAGAT-CCGAAGGCATTTGTGCGAGATACT-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26478239 T-CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26478277 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26478318 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26478343 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
37 24 0.15
38 13 0.08
39 40 0.25
40 75 0.46
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26488918 original size:18 final size:18
Alignment explanation
Indices: 26488897--26488941 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
26488887 AATCTCACTC
26488897 TCTTTTTCTTTTTCAATG
1 TCTTTTTCTTTTTCAATG
*
26488915 TCTTTTTCTTTTTCAATT
1 TCTTTTTCTTTTTCAATG
26488933 TCTTTTTCT
1 TCTTTTTCT
26488942 CTCGTCTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (18 bp):
TCTTTTTCTTTTTCAATG
Found at i:26488957 original size:30 final size:30
Alignment explanation
Indices: 26488901--26488958 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
26488891 TCACTCTCTT
*
26488901 TTTCTTTTTCAATGTCTTTTTCTTTTTCAA
1 TTTCTTTTTCAATGTCTCTTTCTTTTTCAA
**
26488931 TTTCTTTTTCTCTCGTCTCTTT-TTTTTC
1 TTTCTTTTTCAAT-GTCTCTTTCTTTTTC
26488959 TCTTAACTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 17 0.71
31 7 0.29
ACGTcount: A:0.07, C:0.21, G:0.03, T:0.69
Consensus pattern (30 bp):
TTTCTTTTTCAATGTCTCTTTCTTTTTCAA
Found at i:26491237 original size:33 final size:33
Alignment explanation
Indices: 26491200--26491295 Score: 93
Period size: 33 Copynumber: 3.2 Consensus size: 33
26491190 TGAGTTAATG
*
26491200 CATGACTTCATTTAATGATGCAAACTTAACTAA
1 CATGACTTAATTTAATGATGCAAACTTAACTAA
* *
26491233 CATGA---AAGTT-A-CAT---AA-TTAAACTAA
1 CATGACTTAATTTAATGATGCAAACTT-AACTAA
26491258 CATGACTTAATTTAATGATGCAAACTTAACTAA
1 CATGACTTAATTTAATGATGCAAACTTAACTAA
26491291 CATGA
1 CATGA
26491296 AAGTTACATA
Statistics
Matches: 48, Mismatches: 5, Indels: 20
0.66 0.07 0.27
Matches are distributed among these distances:
24 2 0.04
25 13 0.27
28 6 0.12
29 2 0.04
30 5 0.10
33 18 0.38
34 2 0.04
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (33 bp):
CATGACTTAATTTAATGATGCAAACTTAACTAA
Found at i:26498907 original size:13 final size:13
Alignment explanation
Indices: 26498889--26498913 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26498879 ATGTCTAAGT
26498889 TTAGCTAGCTGAG
1 TTAGCTAGCTGAG
26498902 TTAGCTAGCTGA
1 TTAGCTAGCTGA
26498914 TTTCGAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (13 bp):
TTAGCTAGCTGAG
Found at i:26499560 original size:12 final size:12
Alignment explanation
Indices: 26499543--26499567 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26499533 CCGGATCACG
26499543 TCAATGTTGTCT
1 TCAATGTTGTCT
26499555 TCAATGTTGTCT
1 TCAATGTTGTCT
26499567 T
1 T
26499568 GAACTCGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (12 bp):
TCAATGTTGTCT
Found at i:26508333 original size:27 final size:27
Alignment explanation
Indices: 26508295--26508346 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
26508285 TCATTGAAGC
*
26508295 ATCTTCATTGCTGTCCATGCATGTATT
1 ATCTTCAATGCTGTCCATGCATGTATT
26508322 ATCTTCAATGCTGTCCATGCATGTA
1 ATCTTCAATGCTGTCCATGCATGTA
26508347 CCTACAAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.40
Consensus pattern (27 bp):
ATCTTCAATGCTGTCCATGCATGTATT
Found at i:26511719 original size:18 final size:18
Alignment explanation
Indices: 26511698--26511732 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26511688 TTTTTCTTTT
26511698 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
26511716 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
26511733 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:26511729 original size:6 final size:6
Alignment explanation
Indices: 26511720--26511831 Score: 62
Period size: 6 Copynumber: 18.0 Consensus size: 6
26511710 TCAATCTCAA
* * * ** **
26511720 TTTCTT TTTCAAT TTTCTTT TCTTCAT TTTCTT TTTCTC TCACTT TTTCGA
1 TTTCTT TTTC-TT TTTC-TT T-TTCTT TTTCTT TTTCTT TTTCTT TTTCTT
* * ** * **
26511771 TTTATT TTTCTT TTACAA TTTCTT TTTCTT CTTCTT TTTCAC TTTCTTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTC-TT
26511820 TTTCTT TTTCTT
1 TTTCTT TTTCTT
26511832 CTTTTTTGTT
Statistics
Matches: 74, Mismatches: 29, Indels: 6
0.68 0.27 0.06
Matches are distributed among these distances:
6 58 0.78
7 13 0.18
8 3 0.04
ACGTcount: A:0.09, C:0.20, G:0.01, T:0.71
Consensus pattern (6 bp):
TTTCTT
Found at i:26511805 original size:24 final size:25
Alignment explanation
Indices: 26511778--26511831 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
26511768 CGATTTATTT
26511778 TTCTTTTACAATTTC-TTTTTCTTC
1 TTCTTTTACAATTTCTTTTTTCTTC
* * *
26511802 TTCTTTTTCACTTTCTTTTTTCTTT
1 TTCTTTTACAATTTCTTTTTTCTTC
26511827 TTCTT
1 TTCTT
26511832 CTTTTTTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.72
Consensus pattern (25 bp):
TTCTTTTACAATTTCTTTTTTCTTC
Found at i:26511835 original size:16 final size:16
Alignment explanation
Indices: 26511814--26511844 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26511804 CTTTTTCACT
26511814 TTCTTTTTTCTTTTTC
1 TTCTTTTTTCTTTTTC
*
26511830 TTCTTTTTTGTTTTT
1 TTCTTTTTTCTTTTT
26511845 GTTACTGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.84
Consensus pattern (16 bp):
TTCTTTTTTCTTTTTC
Found at i:26512011 original size:20 final size:20
Alignment explanation
Indices: 26511965--26512011 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
26511955 AGCTCGTTTC
*
26511965 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
26511985 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
26512005 CAGCTCA
1 CAGCTCA
26512012 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:26513550 original size:10 final size:9
Alignment explanation
Indices: 26513537--26513588 Score: 65
Period size: 9 Copynumber: 6.0 Consensus size: 9
26513527 AAAAAAATTC
26513537 AAAAAAAAGG
1 AAAAAAAA-G
26513547 AAAAAAAAG
1 AAAAAAAAG
26513556 AAAAAAAA-
1 AAAAAAAAG
26513564 AAAAAAAAG
1 AAAAAAAAG
*
26513573 --AAGAAAG
1 AAAAAAAAG
26513580 AAAAAAAAG
1 AAAAAAAAG
26513589 TGAAAAGTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
7 6 0.16
8 8 0.22
9 15 0.41
10 8 0.22
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:26513559 original size:17 final size:16
Alignment explanation
Indices: 26513539--26513588 Score: 64
Period size: 16 Copynumber: 3.0 Consensus size: 16
26513529 AAAAATTCAA
26513539 AAAAAAGGAAAAAAAAG
1 AAAAAA-GAAAAAAAAG
*
26513556 AAAAAAAAAAAAAAAAG
1 -AAAAAAGAAAAAAAAG
*
26513573 AAGAAAGAAAAAAAAG
1 AAAAAAGAAAAAAAAG
26513589 TGAAAAGTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 14 0.48
17 9 0.31
18 6 0.21
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAG
Found at i:26513560 original size:20 final size:20
Alignment explanation
Indices: 26513537--26513587 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 20
26513527 AAAAAAATTC
**
26513537 AAAAAAAAGGAAAAAA-AAG
1 AAAAAAAAAAAAAAAAGAAG
26513556 AAAAAAAAAAAAAAAAGAAG
1 AAAAAAAAAAAAAAAAGAAG
26513576 AAAGAAAAAAAA
1 AAA-AAAAAAAA
26513588 GTGAAAAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 14 0.50
20 6 0.21
21 8 0.29
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAAAAAAAGAAG
Found at i:26513594 original size:24 final size:22
Alignment explanation
Indices: 26513537--26513594 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 22
26513527 AAAAAAATTC
26513537 AAAAAAAAGGAAAAAAAAGAAA
1 AAAAAAAAGGAAAAAAAAGAAA
*
26513559 AAAAAAAA--AAAAAGAAGAAA
1 AAAAAAAAGGAAAAAAAAGAAA
26513579 GAAAAAAAAGTGAAAA
1 -AAAAAAAAG-GAAAA
26513595 GTCTTGCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 11 0.35
21 8 0.26
22 8 0.26
24 4 0.13
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (22 bp):
AAAAAAAAGGAAAAAAAAGAAA
Found at i:26514691 original size:48 final size:47
Alignment explanation
Indices: 26514614--26514717 Score: 131
Period size: 48 Copynumber: 2.2 Consensus size: 47
26514604 AGTGTCATAG
*
26514614 AAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATCGA
1 AAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATCGA
* *
26514662 AAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATTGA
1 AAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATCGA
26514710 AAAAGAAA
1 AAAAGAAA
26514718 GAAAAGACAA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 38 0.76
49 8 0.16
50 4 0.08
ACGTcount: A:0.60, C:0.02, G:0.24, T:0.14
Consensus pattern (47 bp):
AAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATCGA
Found at i:26516434 original size:20 final size:20
Alignment explanation
Indices: 26516388--26516434 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
26516378 AGCTCGTTTC
*
26516388 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
26516408 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
26516428 CAGCTCA
1 CAGCTCA
26516435 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:26522484 original size:27 final size:27
Alignment explanation
Indices: 26522454--26522506 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
26522444 CTGAACTTTG
26522454 GACATCATTAA-AACATGCAATAAAATT
1 GACA-CATTAATAACATGCAATAAAATT
* *
26522481 GACACATTAATAACGTGCATTAAAAT
1 GACACATTAATAACATGCAATAAAAT
26522507 AAAACACATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.26
Consensus pattern (27 bp):
GACACATTAATAACATGCAATAAAATT
Found at i:26528367 original size:10 final size:10
Alignment explanation
Indices: 26528352--26528376 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26528342 GCCCAAAACC
26528352 TGATACCAAA
1 TGATACCAAA
26528362 TGATACCAAA
1 TGATACCAAA
26528372 TGATA
1 TGATA
26528377 GAGGGTTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.12, T:0.24
Consensus pattern (10 bp):
TGATACCAAA
Found at i:26532086 original size:24 final size:24
Alignment explanation
Indices: 26532036--26532086 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
26532026 GAGAGAAAAT
*
26532036 GAAAAAGAAAATAAAAATGGGAAA
1 GAAAAAGAAAATAAAAATGCGAAA
*
26532060 GAAAGAAGAAAATAAAAAT-CGACA
1 GAAA-AAGAAAATAAAAATGCGAAA
26532084 GAA
1 GAA
26532087 GAAAAATCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 10 0.42
25 14 0.58
ACGTcount: A:0.69, C:0.04, G:0.20, T:0.08
Consensus pattern (24 bp):
GAAAAAGAAAATAAAAATGCGAAA
Found at i:26532093 original size:15 final size:17
Alignment explanation
Indices: 26532073--26532110 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
26532063 AGAAGAAAAT
26532073 AAAAATCGA-CA-GAAG
1 AAAAATCGAGCATGAAG
*
26532088 AAAAATCGAGCATTAAG
1 AAAAATCGAGCATGAAG
26532105 AAAAAT
1 AAAAAT
26532111 GAGAGTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 9 0.45
16 2 0.10
17 9 0.45
ACGTcount: A:0.61, C:0.11, G:0.16, T:0.13
Consensus pattern (17 bp):
AAAAATCGAGCATGAAG
Found at i:26538677 original size:40 final size:40
Alignment explanation
Indices: 26538640--26538903 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 40
26538630 GCTACTCGTT
* *
26538640 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
26538680 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26538720 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
26538760 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
26538800 CCAATGCCTTCGGG-CTTAGCCC-GAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
26538838 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
26538879 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26538904 CATCATTCGA
Statistics
Matches: 203, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
37 2 0.01
38 24 0.12
39 14 0.07
40 150 0.74
41 13 0.06
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26538895 original size:118 final size:121
Alignment explanation
Indices: 26538640--26538903 Score: 360
Period size: 118 Copynumber: 2.2 Consensus size: 121
26538630 GCTACTCGTT
*
26538640 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
26538704 GATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
* * *
26538760 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCC-
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* ** * *
26538822 GAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
66 GAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCA
26538879 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26538904 CATCATTCGA
Statistics
Matches: 128, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
117 3 0.02
118 60 0.47
119 15 0.12
120 48 0.38
121 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
GAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA
Found at i:26546567 original size:40 final size:40
Alignment explanation
Indices: 26546530--26546698 Score: 243
Period size: 40 Copynumber: 4.2 Consensus size: 40
26546520 GCTACTCGTT
*
26546530 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
26546570 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
26546610 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * *
26546650 CCAATGCTTTCGGG-CATAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
26546689 CAAATGCCTT
1 CAAATGCCTT
26546699 TGGATCTTAG
Statistics
Matches: 118, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 29 0.25
40 85 0.72
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:26546642 original size:80 final size:80
Alignment explanation
Indices: 26546530--26546747 Score: 255
Period size: 80 Copynumber: 2.7 Consensus size: 80
26546520 GCTACTCGTT
*
26546530 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
*
26546594 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* * * * *
26546610 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCTTTCGGG-CATAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
26546674 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * * * * *
26546689 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTA
26546748 GCCGGACATC
Statistics
Matches: 116, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
78 3 0.03
79 54 0.47
80 55 0.47
81 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
AATTAGTAACTCGCA
Found at i:26546714 original size:119 final size:120
Alignment explanation
Indices: 26546532--26546747 Score: 287
Period size: 119 Copynumber: 1.8 Consensus size: 120
26546522 TACTCGTTCA
*
26546532 AATGCCTTCGGGACATAGCCCGATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
26546597 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
26546652 AATGCTTTCGGG-CATAGCCCGGAAT-TAGTATCTCGCACAAATGCCTT-TGGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCC-GAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
26546714 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
26546748 GCCGGACATC
Statistics
Matches: 83, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 3 0.04
119 58 0.70
120 22 0.27
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:26546753 original size:79 final size:78
Alignment explanation
Indices: 26546530--26546753 Score: 220
Period size: 79 Copynumber: 2.8 Consensus size: 78
26546520 GCTACTCGTT
* * * *
26546530 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGA-TATAGTAACTAGCACAAA-GCCTTCGGGACTT-AGCCG
*
26546594 GATTTAGTAACTCGCA
63 GAATTAGTAACTCGCA
* * * * *
26546610 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCTTTCGGG-CATAGCCCGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCA-CAAAGCCTTCGGGACTTAG-CCGG
*
26546674 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* ** * *
26546689 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCGG
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAAGCCTTCGGGACTTAGCCGG
26546753 A
64 A
26546754 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 13
0.79 0.13 0.09
Matches are distributed among these distances:
78 4 0.03
79 60 0.50
80 50 0.42
81 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAAGCCTTCGGGACTTAGCCGGAA
TTAGTAACTCGCA
Found at i:26547946 original size:56 final size:56
Alignment explanation
Indices: 26547879--26547999 Score: 242
Period size: 56 Copynumber: 2.2 Consensus size: 56
26547869 TATTAGTTTA
26547879 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
26547935 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
26547991 TTGCCCATG
1 TTGCCCATG
26548000 ATCCCTTGTC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 65 1.00
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:26548750 original size:24 final size:23
Alignment explanation
Indices: 26548704--26548756 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
26548694 TAATATTTGT
26548704 TTTTAATATGTCTAGCTACAACA
1 TTTTAATATGTCTAGCTACAACA
*
26548727 TTTTAATATGTCTTTAGCT-GAACA
1 TTTTAATATGTC--TAGCTACAACA
26548751 TTTTAA
1 TTTTAA
26548757 ATACAGGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 12 0.44
24 10 0.37
25 5 0.19
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.45
Consensus pattern (23 bp):
TTTTAATATGTCTAGCTACAACA
Found at i:26557355 original size:20 final size:20
Alignment explanation
Indices: 26557288--26557356 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 20
26557278 ACTCTACTTC
* *
26557288 AAGCTCACTCAGCTCAACTT
1 AAGCTCATTCAGCTCATCTT
* ***
26557308 TAGCTCAAGGAGCTCATTCTT
1 AAGCTCATTCAGCTCA-TCTT
26557329 -AGCTCATTCAGCTCATCTT
1 AAGCTCATTCAGCTCATCTT
26557348 AAGCTCATT
1 AAGCTCATT
26557357 TTAGTTTGCA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 4 0.10
20 32 0.82
21 3 0.08
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (20 bp):
AAGCTCATTCAGCTCATCTT
Found at i:26567239 original size:19 final size:19
Alignment explanation
Indices: 26567215--26567307 Score: 86
Period size: 19 Copynumber: 5.1 Consensus size: 19
26567205 AATAAATTAC
*
26567215 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
26567234 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
** * * *
26567253 TGC-T-GGAATAAATT-A-C
1 T-CATCTTAGTTAATTAAGT
26567269 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
*
26567288 TCATCTTAGTTAATTTAGT
1 TCATCTTAGTTAATTAAGT
26567307 T
1 T
26567308 GCTTAAATCA
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
15 1 0.02
16 2 0.04
17 7 0.12
18 7 0.12
19 39 0.68
20 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:26567260 original size:54 final size:54
Alignment explanation
Indices: 26567196--26567310 Score: 203
Period size: 54 Copynumber: 2.1 Consensus size: 54
26567186 ATAAGTATTT
* *
26567196 AGTTGTTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAGTTAATTA
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
*
26567250 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTT
1 AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
26567304 AGTTGCT
1 AGTTGCT
26567311 TAAATCATTA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.44
Consensus pattern (54 bp):
AGTTGCTGGAATAAATTACTCATCTTAGTTAATTAAGTTCATCTTAGTTAATTA
Found at i:26571362 original size:21 final size:22
Alignment explanation
Indices: 26571322--26571382 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 22
26571312 AACAAGTGAG
*
26571322 GAAAAATAAAAAG-G-AGAAGA
1 GAAAAATAAAAAGTGAAAAAGA
26571342 GAAAAAT-AAAAGTGAAAAAGA
1 GAAAAATAAAAAGTGAAAAAGA
*
26571363 -AGAAAATGAAAA-TGAAAAAG
1 GA-AAAATAAAAAGTGAAAAAG
26571383 GCGAAAAGGA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
19 5 0.14
20 9 0.25
21 18 0.50
22 4 0.11
ACGTcount: A:0.70, C:0.00, G:0.21, T:0.08
Consensus pattern (22 bp):
GAAAAATAAAAAGTGAAAAAGA
Found at i:26571394 original size:21 final size:22
Alignment explanation
Indices: 26571349--26571394 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
26571339 AGAGAAAAAT
*
26571349 AAAAGTGAAAAAGAAGAAAATG
1 AAAAGTGAAAAAGAAGAAAAGG
**
26571371 AAAA-TGAAAAAGGCGAAAAGG
1 AAAAGTGAAAAAGAAGAAAAGG
26571392 AAA
1 AAA
26571395 GCGAGAGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (22 bp):
AAAAGTGAAAAAGAAGAAAAGG
Found at i:26583119 original size:23 final size:23
Alignment explanation
Indices: 26583093--26583154 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
26583083 TGGTTTTGGG
**
26583093 TTTGTTATGAAATGGTAATGTGA
1 TTTGTTATGAAATGGTAATACGA
26583116 TTTGGTT-TGAAATGGTAATACGA
1 TTT-GTTATGAAATGGTAATACGA
* *
26583139 TTTGGTACGAAATGGT
1 TTTGTTATGAAATGGT
26583155 TATGGTTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 2 0.06
23 28 0.85
24 3 0.09
ACGTcount: A:0.29, C:0.03, G:0.27, T:0.40
Consensus pattern (23 bp):
TTTGTTATGAAATGGTAATACGA
Found at i:26586358 original size:62 final size:62
Alignment explanation
Indices: 26586281--26586448 Score: 228
Period size: 62 Copynumber: 2.7 Consensus size: 62
26586271 GAATTTGGGT
* *
26586281 CACACGGGCGTGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTGGATCACACAGGCTAA
1 CACACGGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTGAATCACACAGGCTAA
* * * * * * *
26586343 CACACAGGCATGTGTCCAAGTCGTGTAACTCACTGACTTTGAATTTGAATCATACATGCTGA
1 CACACGGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTGAATCACACAGGCTAA
* * *
26586405 CACACGGGCATGTGTCCAGGCCATGTGACTCATTGACTTCGAAT
1 CACACGGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCGAAT
26586449 CTGAGACACA
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
62 90 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (62 bp):
CACACGGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTGAATCACACAGGCTAA
Found at i:26586471 original size:62 final size:63
Alignment explanation
Indices: 26586280--26586473 Score: 186
Period size: 62 Copynumber: 3.1 Consensus size: 63
26586270 CGAATTTGGG
*
26586280 TCACACGGGCGTGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTG-GATCACACAGG-CTA-
1 TCACACGGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTGAGATCACAC-GGTC-AC
* * * * * * * *
26586342 ACACACAGGCATGTGTCCAAGTCGTGTAACTCACTGACTTTGAATTTGA-ATCATAC-AT-GC
1 TCACACGGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTGAGATCACACGGTCAC
* * * *
26586402 TGACACACGGGCATGTGTCCAGGCCATGTGACTCATTGACTTCGAATCTGAGA-CACACGGTCAC
1 T--CACACGGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTGAGATCACACGGTCAC
26586466 TCACACGG
1 TCACACGG
26586474 CCGTGTGCAA
Statistics
Matches: 103, Mismatches: 21, Indels: 16
0.74 0.15 0.11
Matches are distributed among these distances:
62 99 0.96
63 2 0.02
64 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (63 bp):
TCACACGGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCGAATTTGAGATCACACGGTCAC
Found at i:26588187 original size:39 final size:39
Alignment explanation
Indices: 26588144--26588323 Score: 198
Period size: 39 Copynumber: 4.6 Consensus size: 39
26588134 CATATTCACT
* * *
26588144 TTTAAGCACATATCACATTACACATATAATAACATAAAA
1 TTTAAGCACATATCACAATACTCATATAATCACATAAAA
* * * *
26588183 TTTAAGCATATATCACAATACTCATATAATCGCATGACA
1 TTTAAGCACATATCACAATACTCATATAATCACATAAAA
* **
26588222 TTTAAGCACATATCACAATACTGATATAATCACATAATG
1 TTTAAGCACATATCACAATACTCATATAATCACATAAAA
* * * **
26588261 TTCAAGCATATATCACATTACTCATATAATCACATACCA
1 TTTAAGCACATATCACAATACTCATATAATCACATAAAA
* * *
26588300 TTCAAACATATATCACAATACTCA
1 TTTAAGCACATATCACAATACTCA
26588324 AAAACATGTT
Statistics
Matches: 119, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 119 1.00
ACGTcount: A:0.44, C:0.21, G:0.04, T:0.30
Consensus pattern (39 bp):
TTTAAGCACATATCACAATACTCATATAATCACATAAAA
Found at i:26588273 original size:78 final size:78
Alignment explanation
Indices: 26588144--26588323 Score: 236
Period size: 78 Copynumber: 2.3 Consensus size: 78
26588134 CATATTCACT
* * *
26588144 TTTAAGCACATATCACATTACACATATAATAACATAAAATTTAAGCATATATCACAATACTCATA
1 TTTAAGCACATATCACAATACTCATATAATAACATAAAATTCAAGCATATATCACAATACTCATA
*
26588209 TAATCGCATGA-CA
66 TAATCACAT-ACCA
* * ** *
26588222 TTTAAGCACATATCACAATACTGATATAATCACATAATGTTCAAGCATATATCACATTACTCATA
1 TTTAAGCACATATCACAATACTCATATAATAACATAAAATTCAAGCATATATCACAATACTCATA
26588287 TAATCACATACCA
66 TAATCACATACCA
* * *
26588300 TTCAAACATATATCACAATACTCA
1 TTTAAGCACATATCACAATACTCA
26588324 AAAACATGTT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
77 1 0.01
78 87 0.99
ACGTcount: A:0.44, C:0.21, G:0.04, T:0.30
Consensus pattern (78 bp):
TTTAAGCACATATCACAATACTCATATAATAACATAAAATTCAAGCATATATCACAATACTCATA
TAATCACATACCA
Found at i:26590379 original size:33 final size:34
Alignment explanation
Indices: 26590328--26590402 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
26590318 AGATTCAAAC
*
26590328 AAATTAATTACTAACACTTACTTAAGCTGAACTA
1 AAATTAATTACTAACACTTACTTAAGCTAAACTA
* *
26590362 AAATTAATT-CTAACACTTATTTGAGCTAAACTA
1 AAATTAATTACTAACACTTACTTAAGCTAAACTA
*
26590395 AATTTAAT
1 AAATTAAT
26590403 AAACTAACTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 28 0.76
34 9 0.24
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (34 bp):
AAATTAATTACTAACACTTACTTAAGCTAAACTA
Found at i:26592178 original size:18 final size:18
Alignment explanation
Indices: 26592150--26592193 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
26592140 TCAATCTCTT
26592150 TTTTCTCTTTTTC-ATTCTC
1 TTTT-TCTTTTTCGATT-TC
26592169 TTTTTCTTTTTCGATTTC
1 TTTTTCTTTTTCGATTTC
26592187 TTTTTCT
1 TTTTTCT
26592194 GTCTTCATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
18 17 0.71
19 7 0.29
ACGTcount: A:0.05, C:0.20, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTTCTTTTTCGATTTC
Found at i:26592203 original size:18 final size:17
Alignment explanation
Indices: 26592150--26592204 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 17
26592140 TCAATCTCTT
*
26592150 TTTTCTCTTTTTCATTCTC
1 TTTT-TCTTCTTCATT-TC
*
26592169 TTTTTCTTTTTCGATTTC
1 TTTTTCTTCTTC-ATTTC
26592187 TTTTTCTGTCTTCATTTC
1 TTTTTCT-TCTTCATTTC
26592205 ATTACAAGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
18 22 0.67
19 11 0.33
ACGTcount: A:0.05, C:0.22, G:0.04, T:0.69
Consensus pattern (17 bp):
TTTTTCTTCTTCATTTC
Found at i:26594468 original size:9 final size:9
Alignment explanation
Indices: 26594454--26594480 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
26594444 GTTTCTTGGG
26594454 CCAAGATTT
1 CCAAGATTT
26594463 CCAAGATTT
1 CCAAGATTT
26594472 CCAAGATTT
1 CCAAGATTT
26594481 GACATCTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (9 bp):
CCAAGATTT
Found at i:26595175 original size:19 final size:19
Alignment explanation
Indices: 26595151--26595189 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
26595141 AGCCGGTAAT
26595151 TTGGGTTCAAAAGATAGGC
1 TTGGGTTCAAAAGATAGGC
26595170 TTGGGTTCAAAAGATAGGC
1 TTGGGTTCAAAAGATAGGC
26595189 T
1 T
26595190 AAGTTAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (19 bp):
TTGGGTTCAAAAGATAGGC
Found at i:26597212 original size:19 final size:20
Alignment explanation
Indices: 26597180--26597217 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
26597170 CAAGCCGATT
*
26597180 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAACTCCC
26597200 TTAGCTC-ATTTCAACTCC
1 TTAGCTCAATTTCAACTCC
26597218 AACCAGCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAACTCCC
Found at i:26599241 original size:328 final size:329
Alignment explanation
Indices: 26598536--26599516 Score: 1842
Period size: 328 Copynumber: 3.0 Consensus size: 329
26598526 CTTGCAAAAT
* *
26598536 GAGGAGCGCCGACGTTCGTAGCTATCCTGGAAGATAGGTTTGTAAAAAAAATCATGCATAAAAAA
1 GAGGAGCGCCGATGTTCGTAGCTATCCCGGAAGATAGGTTTGTAAAAAAAATCATGCATAAAAAA
*
26598601 AAGAAAGGCACCCAATTGTATTTATTCATCTATTGTAATTGAAAAAAAATTTCAAAGTT-AAAAA
66 AAGAAAGGCACTCAATTGTATTTATTCATCTATTGTAATTGAAAAAAAATTTCAAAGTTAAAAAA
26598665 AAATCGAGTGACTATAAAAAAAAAGTGAAGTCTTGAAAATTCTATTTCTTCTTCTAAATATCACA
131 AAATCGAGTGACTATAAAAAAAAAGTGAAGTCTTGAAAATTCTATTTCTTCTTCTAAATATCACA
26598730 TACGTGAGTTCTACATTATTTTCTTTTTATACTACCCCAAAAATACGCCACACTTATACCCTGAT
196 TACGTGAGTTCTACATTATTTTCTTTTTATACTACCCCAAAAATACGCCACACTTATACCCTGAT
*
26598795 TTTATTTTTGTTTAGCCTACCCTACACCATTTTATCATTCCCTTTGTTACCCATTTTGAAACTGA
261 TTTATTTTTGTTTAGCCTACCCTACACCATTTCATCATTCCCTTTGTTACCCATTTTGAAACTGA
26598860 GAAC
326 GAAC
* *
26598864 GACGAGCGCCGATGTTCGTAGCTATCCCGGAAGATAGGTTTGTAAAAAAAATCATGAATAAAAAA
1 GAGGAGCGCCGATGTTCGTAGCTATCCCGGAAGATAGGTTTGTAAAAAAAATCATGCATAAAAAA
*
26598929 AAGAAAGGCACTCAATTGTATTTATTCATCTATTGTAATTGAAAAAAAAATTCAAAGTTAAAAAA
66 AAGAAAGGCACTCAATTGTATTTATTCATCTATTGTAATTGAAAAAAAATTTCAAAGTTAAAAAA
26598994 AAATCGAGTGACTAT-AAAAAAAA-TGAAGTCTTGAAAATTCTATTTCTTCTTCTAAATATCACA
131 AAATCGAGTGACTATAAAAAAAAAGTGAAGTCTTGAAAATTCTATTTCTTCTTCTAAATATCACA
26599057 TACGTGAGTTCTACATTATTTTCTTTTTATACTACCCCAAAAATACGCCACACTTATACCCTGAT
196 TACGTGAGTTCTACATTATTTTCTTTTTATACTACCCCAAAAATACGCCACACTTATACCCTGAT
*
26599122 TTTATTTTTGTTTAGCCTACCCTACACCATTTCATCATTCCCTTTGCTACCCATTTTGAAACTGA
261 TTTATTTTTGTTTAGCCTACCCTACACCATTTCATCATTCCCTTTGTTACCCATTTTGAAACTGA
*
26599187 GAGC
326 GAAC
26599191 GAGGAGCGCCGATGTTCGTAGCTATCCCGGAAGATAGGTTTGTAAAAAAAAATCATGCATAAAAA
1 GAGGAGCGCCGATGTTCGTAGCTATCCCGGAAGATAGGTTTGT-AAAAAAAATCATGCATAAAAA
26599256 AAAGAAAGGCACTCAATTGTATTTATTCATCTATTGTAATTGAAAAAAAATTTCAAAGTTAAAAA
65 AAAGAAAGGCACTCAATTGTATTTATTCATCTATTGTAATTGAAAAAAAATTTCAAAGTTAAAAA
26599321 AAAATCGAGTGACTATAAAAAAAAAGTGAAGTCTTGAAAATTCTATTTCTTCTTCTAAATATCAC
130 AAAATCGAGTGACTATAAAAAAAAAGTGAAGTCTTGAAAATTCTATTTCTTCTTCTAAATATCAC
*
26599386 ATACGTGAGTTCTACATTATTTTCTTTTTATACTACCCAAAAAATACGCCACACTTATACCCTGA
195 ATACGTGAGTTCTACATTATTTTCTTTTTATACTACCCCAAAAATACGCCACACTTATACCCTGA
26599451 TTTTATTTTTGTTTAGCCTACCCTACACCATTTCATCATTCCCTTTGTTACCCATTTTGAAACTG
260 TTTTATTTTTGTTTAGCCTACCCTACACCATTTCATCATTCCCTTTGTTACCCATTTTGAAACTG
26599516 A
325 A
26599517 CCTTCAAGCT
Statistics
Matches: 635, Mismatches: 14, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
327 213 0.34
328 226 0.36
329 28 0.04
330 168 0.26
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (329 bp):
GAGGAGCGCCGATGTTCGTAGCTATCCCGGAAGATAGGTTTGTAAAAAAAATCATGCATAAAAAA
AAGAAAGGCACTCAATTGTATTTATTCATCTATTGTAATTGAAAAAAAATTTCAAAGTTAAAAAA
AAATCGAGTGACTATAAAAAAAAAGTGAAGTCTTGAAAATTCTATTTCTTCTTCTAAATATCACA
TACGTGAGTTCTACATTATTTTCTTTTTATACTACCCCAAAAATACGCCACACTTATACCCTGAT
TTTATTTTTGTTTAGCCTACCCTACACCATTTCATCATTCCCTTTGTTACCCATTTTGAAACTGA
GAAC
Found at i:26602161 original size:17 final size:16
Alignment explanation
Indices: 26602132--26602165 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26602122 TGCTGAATAA
26602132 AGTTATTAATTAAGTT
1 AGTTATTAATTAAGTT
*
26602148 AGTTAATTAGTTAAGTT
1 AGTT-ATTAATTAAGTT
26602165 A
1 A
26602166 TAGTTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (16 bp):
AGTTATTAATTAAGTT
Found at i:26605711 original size:15 final size:14
Alignment explanation
Indices: 26605684--26605731 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 14
26605674 TCCATCGAGC
*
26605684 GAGAAAAAGAAAAA
1 GAGAAAAAAAAAAA
26605698 GAGAAAAATAAAAAA
1 GAGAAAAA-AAAAAA
26605713 GAGTGAAAAAAAAGAAA
1 GA--GAAAAAAAA-AAA
26605730 GA
1 GA
26605732 AAAGAATGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 8 0.28
15 7 0.24
16 3 0.10
17 11 0.38
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (14 bp):
GAGAAAAAAAAAAA
Found at i:26608287 original size:17 final size:16
Alignment explanation
Indices: 26608258--26608291 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26608248 TGTTGAATAA
26608258 AGTTATTAATTAAGTT
1 AGTTATTAATTAAGTT
*
26608274 AGTTAATTAGTTAAGTT
1 AGTT-ATTAATTAAGTT
26608291 A
1 A
26608292 TAGTTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.47
Consensus pattern (16 bp):
AGTTATTAATTAAGTT
Found at i:26610133 original size:19 final size:20
Alignment explanation
Indices: 26610101--26610138 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
26610091 CAAGCTGATT
26610101 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
26610121 TTAGCTC-ATTTCAGCTCC
1 TTAGCTCAATTTCAGCTCC
26610139 AACCAGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:26610370 original size:16 final size:16
Alignment explanation
Indices: 26610330--26610371 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
26610320 AATTTAATAG
26610330 CTATGTTTTTAATTAA
1 CTATGTTTTTAATTAA
* *
26610346 TTATTTTTTTAAATT-A
1 CTATGTTTTT-AATTAA
26610362 CTATGTTTTT
1 CTATGTTTTT
26610372 TTGCTTATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (16 bp):
CTATGTTTTTAATTAA
Found at i:26610632 original size:17 final size:18
Alignment explanation
Indices: 26610612--26610653 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
26610602 GGAAATTATG
*
26610612 AAAAAAAATTAAGAA-TA
1 AAAAAAAAGTAAGAAGTA
* *
26610629 AAAAAAGAGTACGAAGTA
1 AAAAAAAAGTAAGAAGTA
26610647 AAAAAAA
1 AAAAAAA
26610654 TTCGAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.74, C:0.02, G:0.12, T:0.12
Consensus pattern (18 bp):
AAAAAAAAGTAAGAAGTA
Found at i:26611794 original size:12 final size:12
Alignment explanation
Indices: 26611754--26611805 Score: 50
Period size: 13 Copynumber: 4.0 Consensus size: 12
26611744 AGAAATTGAG
*
26611754 ATTGAAAAAGGA
1 ATTGAAAAAGAA
*
26611766 AGTGAAAAAGAGAAA
1 ATTG-AAAA-AG-AA
26611781 ATTGAAAAAGAA
1 ATTGAAAAAGAA
26611793 ATTGAAGAAAGAA
1 ATTGAA-AAAGAA
26611806 GAGAAAACGA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 11 0.33
13 12 0.36
14 6 0.18
15 4 0.12
ACGTcount: A:0.63, C:0.00, G:0.23, T:0.13
Consensus pattern (12 bp):
ATTGAAAAAGAA
Found at i:26612689 original size:15 final size:15
Alignment explanation
Indices: 26612671--26612724 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
26612661 GTATTGAATT
*
26612671 AAAAAAATTTGAAAAA
1 AAAAAAATTCG-AAAA
*
26612687 AAAAGAAATTCGGAAA
1 AAAA-AAATTCGAAAA
*
26612703 AAAATAATTCGAAAGA
1 AAAAAAATTCGAAA-A
26612719 AAAAAA
1 AAAAAA
26612725 GAGAGGAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
15 8 0.26
16 17 0.55
17 6 0.19
ACGTcount: A:0.70, C:0.04, G:0.11, T:0.15
Consensus pattern (15 bp):
AAAAAAATTCGAAAA
Found at i:26617038 original size:19 final size:20
Alignment explanation
Indices: 26617014--26617051 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
26617004 TGAGCTGATT
26617014 GGAGCTGAAA-TGAGCTAAG
1 GGAGCTGAAATTGAGCTAAG
26617033 GGAGCTGAAATTGAGCTAA
1 GGAGCTGAAATTGAGCTAA
26617052 AGTCAGCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.37, C:0.11, G:0.34, T:0.18
Consensus pattern (20 bp):
GGAGCTGAAATTGAGCTAAG
Found at i:26621872 original size:16 final size:16
Alignment explanation
Indices: 26621853--26621884 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
26621843 TTAATCATAT
26621853 TTTTTTTACTTCAAAA
1 TTTTTTTACTTCAAAA
26621869 TTTTTTTACTTCAAAA
1 TTTTTTTACTTCAAAA
26621885 CTACAATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTTTTTACTTCAAAA
Found at i:26623342 original size:21 final size:21
Alignment explanation
Indices: 26623298--26623342 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26623288 AAATTAACAT
**
26623298 TGAAAAAGAAATTGAAAGAAA
1 TGAAAAAGAAAAAGAAAGAAA
26623319 TGAAAAAGAAAAAG-AAGAAGA
1 TGAAAAAGAAAAAGAAAGAA-A
26623340 TGA
1 TGA
26623343 GAATTCAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.67, C:0.00, G:0.22, T:0.11
Consensus pattern (21 bp):
TGAAAAAGAAAAAGAAAGAAA
Found at i:26625257 original size:17 final size:18
Alignment explanation
Indices: 26625235--26625271 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26625225 TGGAATAAAC
26625235 TTAGTTAA-TTAAATAAG
1 TTAGTTAATTTAAATAAG
*
26625252 TTAGTTAATTTAATTAAG
1 TTAGTTAATTTAAATAAG
26625270 TT
1 TT
26625272 CAGCTCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.49
Consensus pattern (18 bp):
TTAGTTAATTTAAATAAG
Found at i:26626095 original size:34 final size:34
Alignment explanation
Indices: 26626051--26626126 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
26626041 GAGTTAGTTT
* *
26626051 ATTAACTTTAGTTTAGCTCAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
*
26626085 ATTAATTTTAGTTCAGCTTAAATAAGTGTTAGTA
1 ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
26626119 ATTAATTT
1 ATTAATTT
26626127 GCTTAAATCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.45
Consensus pattern (34 bp):
ATTAATTTTAGTTCAGCTCAAATAAGTGTTAGTA
Found at i:26644743 original size:20 final size:20
Alignment explanation
Indices: 26644718--26644756 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26644708 TTAGAAACTA
* *
26644718 AATTGAGCTCGAATGAGCTG
1 AATTGAACTCAAATGAGCTG
26644738 AATTGAACTCAAATGAGCT
1 AATTGAACTCAAATGAGCT
26644757 AGTTGGAGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (20 bp):
AATTGAACTCAAATGAGCTG
Found at i:26644785 original size:19 final size:20
Alignment explanation
Indices: 26644761--26644799 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
26644751 TGAGCTAGTT
26644761 GGAGCTGAAA-CGAGCTAAA
1 GGAGCTGAAATCGAGCTAAA
26644780 GGAGCTGAAATCGAGCTAAA
1 GGAGCTGAAATCGAGCTAAA
26644800 ATCAGCTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.41, C:0.15, G:0.31, T:0.13
Consensus pattern (20 bp):
GGAGCTGAAATCGAGCTAAA
Found at i:26647823 original size:15 final size:15
Alignment explanation
Indices: 26647803--26647844 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
26647793 TTTTCTTTTC
*
26647803 TTTTTCATTTTCATT
1 TTTTTCATTTTCAAT
26647818 TTTTTCATTTTCAAT
1 TTTTTCATTTTCAAT
* *
26647833 CTTTTCTTTTTC
1 TTTTTCATTTTC
26647845 TTTCATTTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTCATTTTCAAT
Found at i:26648757 original size:20 final size:21
Alignment explanation
Indices: 26648732--26648770 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26648722 AGAAACAAAA
*
26648732 TATTC-AATTCTTTTTTTTTC
1 TATTCAAACTCTTTTTTTTTC
26648752 TATTCAAACTCTTTTTTTT
1 TATTCAAACTCTTTTTTTT
26648771 ACTTCATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.67
Consensus pattern (21 bp):
TATTCAAACTCTTTTTTTTTC
Found at i:26650268 original size:40 final size:40
Alignment explanation
Indices: 26650231--26650411 Score: 208
Period size: 40 Copynumber: 4.5 Consensus size: 40
26650221 GCTACTCGTT
*
26650231 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26650271 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
26650311 CCAATGCCTTCGGG-CTTAGCCCGAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
26650350 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26650391 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
26650412 TGGGCATCAT
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 73 0.61
41 13 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26650375 original size:79 final size:80
Alignment explanation
Indices: 26650233--26650411 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 80
26650223 TACTCGTTCA
* **
26650233 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
26650298 TTAGTAAC-TCGCACC
66 ATAGTAACTTAGCA-C
* **
26650313 AATGCCTTCGGG-CTTAGCCCGAA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACTTAGCCCGAATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
26650375 ATATGGTCACTTAGCAC
64 ATATAGTAACTTAGCAC
*
26650392 AAAGCCTTCGGGACTTAGCC
1 AATGCCTTCGGGACTTAGCC
26650412 TGGGCATCAT
Statistics
Matches: 84, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 4 0.05
79 57 0.68
80 23 0.27
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:26658365 original size:39 final size:39
Alignment explanation
Indices: 26658240--26658423 Score: 167
Period size: 40 Copynumber: 4.6 Consensus size: 39
26658230 GCTACTCGTT
* *
26658240 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCA
* * * *
26658280 CAAATGCCTTCGAGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GGCTTAGCCCGGAATTAGTAACTCGCA
* *
26658320 CCAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
* * * * * *
26658359 CAAATGCCTTCGGATCTTAGTCTGGAA-TGGTCACTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAATTAGTAAC-TCGCA
26658399 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
26658424 CATCATTCGA
Statistics
Matches: 118, Mismatches: 21, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
39 55 0.47
40 60 0.51
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:26666634 original size:30 final size:33
Alignment explanation
Indices: 26666598--26666660 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
26666588 CACCCAAGTA
26666598 TGAAAAC-AAATTC-AAACAGCCTTGT-ATGTG
1 TGAAAACAAAATTCTAAACAGCCTTGTAATGTG
**
26666628 TGAAAACAAAATTCTGGACAGCCTTGTAATGTG
1 TGAAAACAAAATTCTAAACAGCCTTGTAATGTG
26666661 AACGGAATGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 7 0.25
31 6 0.21
32 10 0.36
33 5 0.18
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (33 bp):
TGAAAACAAAATTCTAAACAGCCTTGTAATGTG
Found at i:26667568 original size:25 final size:24
Alignment explanation
Indices: 26667540--26667589 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
26667530 TGAAGGAATT
26667540 TGGCCAAATGAATTGATGATGAAAA
1 TGGCCAAATGAA-TGATGATGAAAA
* * *
26667565 TGGCTAACTGAATGATGGTGAAAA
1 TGGCCAAATGAATGATGATGAAAA
26667589 T
1 T
26667590 TCGGCTAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.40, C:0.08, G:0.26, T:0.26
Consensus pattern (24 bp):
TGGCCAAATGAATGATGATGAAAA
Found at i:26671642 original size:24 final size:25
Alignment explanation
Indices: 26671596--26671642 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
26671586 AGGAATTTGG
*
26671596 CTAAATGAATTGATGATGGAAATGA
1 CTAAATGAATTGATGATGAAAATGA
* *
26671621 CTAAGTGAA-TGATGGTGAAAAT
1 CTAAATGAATTGATGATGAAAAT
26671643 TCAGCTAAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.28
Consensus pattern (25 bp):
CTAAATGAATTGATGATGAAAATGA
Found at i:26673570 original size:9 final size:9
Alignment explanation
Indices: 26673556--26673581 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26673546 TAAAAACACA
26673556 AACTAAAAT
1 AACTAAAAT
26673565 AACTAAAAT
1 AACTAAAAT
26673574 AACTAAAA
1 AACTAAAA
26673582 ATTAATGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
AACTAAAAT
Found at i:26676034 original size:54 final size:50
Alignment explanation
Indices: 26675970--26676103 Score: 128
Period size: 50 Copynumber: 2.6 Consensus size: 50
26675960 GAACAATGAA
* * * *
26675970 TTACTTAATGCATGACTTCATTTAAAAAAATGCAAACCTTAACTAACTTGGGAG
1 TTACATAATGCATGACTTAATTT---AAAATGC-AACCTTAACTAACATGAGAG
* ** *
26676024 TTACATAATGCATGACATAATTTATGATGCAATCTTAACTAACATGAGAG
1 TTACATAATGCATGACTTAATTTAAAATGCAACCTTAACTAACATGAGAG
* *
26676074 TAACATAATGCATGACTTTA-TT-AAATGCAA
1 TTACATAATGCATGACTTAATTTAAAATGCAA
26676104 AACACATAAT
Statistics
Matches: 67, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
48 6 0.09
49 2 0.03
50 34 0.51
51 5 0.07
54 20 0.30
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (50 bp):
TTACATAATGCATGACTTAATTTAAAATGCAACCTTAACTAACATGAGAG
Found at i:26680142 original size:50 final size:49
Alignment explanation
Indices: 26680015--26680143 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 49
26680005 AATATAACAT
* * *
26680015 GCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTATA
1 GCCAATGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCATATATA
* * * *
26680064 GCCAATGCCATATCCCAGATATTGTCTTACATGGGA-GTTCTCATATAGGT-
1 GCCAATGCTATGTCCCAGACATAGTCTTACATGGGATGTT-TCATATA--TA
* *
26680114 GCCCATGCTATGTCCCAGACATGGTCTTAC
1 GCCAATGCTATGTCCCAGACATAGTCTTAC
26680144 GGGGGACCTC
Statistics
Matches: 65, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
48 3 0.05
49 36 0.55
50 25 0.38
51 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (49 bp):
GCCAATGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCATATATA
Found at i:26708224 original size:21 final size:23
Alignment explanation
Indices: 26708179--26708225 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
26708169 TCACCTGCAA
* *
26708179 TAAACACATTAAAATGAGTTTAT
1 TAAACACATTAAAATCAGCTTAT
26708202 TAAACACATTAAAA-CA-CTTAT
1 TAAACACATTAAAATCAGCTTAT
26708223 TAA
1 TAA
26708226 TCATAACACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 7 0.32
22 1 0.05
23 14 0.64
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (23 bp):
TAAACACATTAAAATCAGCTTAT
Found at i:26717897 original size:4 final size:4
Alignment explanation
Indices: 26717880--26717911 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
26717870 AAGTTTTATT
*
26717880 TTTA TTTT TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
26717912 CTTAGTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:26719856 original size:62 final size:60
Alignment explanation
Indices: 26719722--26719882 Score: 166
Period size: 62 Copynumber: 2.6 Consensus size: 60
26719712 GGGTCGCATG
*
26719722 GGCATGTGTCCAGGCCATGTAACTCACTGACTTCGAAGTTTGATCGACATAAGCTAACACAC
1 GGCATCTGTCCAGG-CATGTAACTCACTGACTTCGAA-TTTGATCGACATAAGCTAACACAC
* * *
26719784 GGCATGTGTCCAGGTCATGTAACTCACTGACTTCGAATTTGAATCATACGT-A-CTAGGACACAC
1 GGCATCTGTCCAGG-CATGTAACTCACTGACTTCGAATTTG-ATC-GACATAAGCTA--ACACAC
* * * *
26719847 GG-GTCTGTCCAGGCCTGTGACTCATTGACTTCGAAT
1 GGCATCTGTCCAGGCATGTAACTCACTGACTTCGAAT
26719883 CTGAGACACA
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
61 27 0.31
62 49 0.56
63 11 0.13
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (60 bp):
GGCATCTGTCCAGGCATGTAACTCACTGACTTCGAATTTGATCGACATAAGCTAACACAC
Found at i:26726836 original size:14 final size:14
Alignment explanation
Indices: 26726814--26726858 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 14
26726804 TTAAAGAAGC
26726814 AACTCATTAAATTA
1 AACTCATTAAATTA
*
26726828 AATTCATTAAA-TA
1 AACTCATTAAATTA
*
26726841 AACTCATTTAATTA
1 AACTCATTAAATTA
26726855 AACT
1 AACT
26726859 AAGATGAGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 11 0.41
14 16 0.59
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:26734753 original size:1 final size:1
Alignment explanation
Indices: 26734742--26734796 Score: 92
Period size: 1 Copynumber: 55.0 Consensus size: 1
26734732 ATTCTCTACC
* *
26734742 TTTTGTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
26734797 CCGAAATTGG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.00, C:0.02, G:0.02, T:0.96
Consensus pattern (1 bp):
T
Found at i:26747855 original size:18 final size:18
Alignment explanation
Indices: 26747822--26747874 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
26747812 ATATATATTA
*
26747822 CGAAATTCATAAAAAAATT
1 CGAAATACA-AAAAAAATT
26747841 CGAAATACAAAAAAAATT
1 CGAAATACAAAAAAAATT
* *
26747859 TGAAATATAAAAAAAA
1 CGAAATACAAAAAAAA
26747875 AGAATATCGA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
18 23 0.74
19 8 0.26
ACGTcount: A:0.66, C:0.08, G:0.06, T:0.21
Consensus pattern (18 bp):
CGAAATACAAAAAAAATT
Found at i:26751902 original size:13 final size:13
Alignment explanation
Indices: 26751884--26751914 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
26751874 ACGAGATTGT
26751884 AAAAAAATTTGAA
1 AAAAAAATTTGAA
26751897 AAAAAAATTTGAA
1 AAAAAAATTTGAA
26751910 AAAAA
1 AAAAA
26751915 TATATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (13 bp):
AAAAAAATTTGAA
Found at i:26754610 original size:23 final size:22
Alignment explanation
Indices: 26754559--26754610 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
26754549 CCTCGTCTTT
*
26754559 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
26754581 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
26754604 TTCTTTT
1 TTCTTTT
26754611 TCAATTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:26754619 original size:12 final size:12
Alignment explanation
Indices: 26754568--26754623 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
26754558 TTTCTTTTGT
26754568 TTCTTTTTCTAAC
1 TTCTTTTTC-AAC
* *
26754581 -TCATTTTC-TC
1 TTCTTTTTCAAC
26754591 TTCTTTCTTCAAC
1 TTCTTT-TTCAAC
*
26754604 TTCTTTTTCAAT
1 TTCTTTTTCAAC
26754616 TTCTTTTT
1 TTCTTTTT
26754624 TTCACATTCC
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 1 0.03
11 4 0.11
12 23 0.66
13 7 0.20
ACGTcount: A:0.12, C:0.23, G:0.00, T:0.64
Consensus pattern (12 bp):
TTCTTTTTCAAC
Found at i:26759646 original size:13 final size:12
Alignment explanation
Indices: 26759613--26759643 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
26759603 TAATTTTTTC
26759613 AAAAAAATTCAA
1 AAAAAAATTCAA
26759625 AAAAAAATTCAA
1 AAAAAAATTCAA
26759637 AAAAAAA
1 AAAAAAA
26759644 ATTTTGGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:26759707 original size:15 final size:15
Alignment explanation
Indices: 26759687--26759740 Score: 90
Period size: 16 Copynumber: 3.5 Consensus size: 15
26759677 TATCAAGTTG
26759687 AAAAAAAATTCGTGA
1 AAAAAAAATTCGTGA
26759702 AAAAAAAATTCGTGAA
1 AAAAAAAATTCGTG-A
26759718 AAAAAAAATTTCGTGA
1 AAAAAAAA-TTCGTGA
26759734 AAAAAAA
1 AAAAAAA
26759741 GAAGAAGCTA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
15 14 0.38
16 17 0.46
17 6 0.16
ACGTcount: A:0.65, C:0.06, G:0.11, T:0.19
Consensus pattern (15 bp):
AAAAAAAATTCGTGA
Found at i:26759709 original size:17 final size:17
Alignment explanation
Indices: 26759687--26759740 Score: 85
Period size: 17 Copynumber: 3.3 Consensus size: 17
26759677 TATCAAGTTG
26759687 AAAAAAAATTCGTG--A
1 AAAAAAAATTCGTGAAA
26759702 AAAAAAAATTCGTGAAA
1 AAAAAAAATTCGTGAAA
*
26759719 AAAAAAATTTCGTGAAA
1 AAAAAAAATTCGTGAAA
26759736 AAAAA
1 AAAAA
26759741 GAAGAAGCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
15 14 0.39
17 22 0.61
ACGTcount: A:0.65, C:0.06, G:0.11, T:0.19
Consensus pattern (17 bp):
AAAAAAAATTCGTGAAA
Found at i:26762490 original size:39 final size:40
Alignment explanation
Indices: 26762321--26762545 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
26762311 GCTCCTCGTT
* * *
26762321 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
26762361 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
26762401 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * * *
26762441 CCAATGCCTTCGGG-CTTAGCTCAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
26762480 CAAATACCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
26762521 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26762546 CATCATTCAA
Statistics
Matches: 156, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 2 0.01
39 29 0.19
40 112 0.72
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Done.