Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 87 of 211
Found at i:27035706 original size:14 final size:14
Alignment explanation
Indices: 27035687--27035760 Score: 62
Period size: 14 Copynumber: 5.1 Consensus size: 14
27035677 TAATGTGGAC
27035687 ACAAATTAAATGAA
1 ACAAATTAAATGAA
27035701 ACAAATTAAATGAAA
1 ACAAATTAAATG-AA
* *
27035716 ACTAA--ACATGACA
1 ACAAATTAAATGA-A
*
27035729 CACTAATTAACATTGAA
1 -ACAAATTAA-A-TGAA
27035746 ACAAATTAAATGAA
1 ACAAATTAAATGAA
27035760 A
1 A
27035761 ACTAAACAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
12 1 0.02
13 5 0.10
14 22 0.45
15 7 0.14
16 9 0.18
17 2 0.04
18 3 0.06
ACGTcount: A:0.59, C:0.12, G:0.07, T:0.22
Consensus pattern (14 bp):
ACAAATTAAATGAA
Found at i:27035747 original size:45 final size:43
Alignment explanation
Indices: 27035685--27035781 Score: 158
Period size: 45 Copynumber: 2.2 Consensus size: 43
27035675 CATAATGTGG
* *
27035685 ACACAAATTAAATGAAACAAATTAAATGAAAACTAAACATGAC
1 ACACTAATTAAATGAAACAAATTAAATGAAAACTAAACAGGAC
27035728 ACACTAATTAACATTGAAACAAATTAAATGAAAACTAAACAGGAC
1 ACACTAATTAA-A-TGAAACAAATTAAATGAAAACTAAACAGGAC
27035773 ACACTAATT
1 ACACTAATT
27035782 CGGCTGTGTC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
43 10 0.20
44 1 0.02
45 39 0.78
ACGTcount: A:0.57, C:0.15, G:0.07, T:0.21
Consensus pattern (43 bp):
ACACTAATTAAATGAAACAAATTAAATGAAAACTAAACAGGAC
Found at i:27041373 original size:18 final size:19
Alignment explanation
Indices: 27041345--27041382 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
27041335 TCTCTTTCAA
27041345 TTTCTTTTTCAATCTCTTT
1 TTTCTTTTTCAATCTCTTT
*
27041364 TTTC-TTTTCACTCTCTTT
1 TTTCTTTTTCAATCTCTTT
27041382 T
1 T
27041383 GTTTTTGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTCTTTTTCAATCTCTTT
Found at i:27042063 original size:18 final size:18
Alignment explanation
Indices: 27042035--27042069 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
27042025 CAACAAAATG
27042035 TTAGAAAACAAAAGATAAA
1 TTAGAAAACAAAA-ATAAA
27042054 TTAG-AAACAAAAATAA
1 TTAGAAAACAAAAATAA
27042070 TCCTCACCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 8 0.50
19 4 0.25
ACGTcount: A:0.69, C:0.06, G:0.09, T:0.17
Consensus pattern (18 bp):
TTAGAAAACAAAAATAAA
Found at i:27044665 original size:24 final size:24
Alignment explanation
Indices: 27044638--27044687 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
27044628 TTAAAACTAC
27044638 TTCT-AAAAAAAACTCAAGAGAGAA
1 TTCTGAAAAAAAACTCAA-AGAGAA
** *
27044662 TTCTGGGAGAAAACTCAAAGAGAA
1 TTCTGAAAAAAAACTCAAAGAGAA
27044686 TT
1 TT
27044688 TTTCACTCGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.50, C:0.12, G:0.18, T:0.20
Consensus pattern (24 bp):
TTCTGAAAAAAAACTCAAAGAGAA
Found at i:27047190 original size:33 final size:34
Alignment explanation
Indices: 27047147--27047211 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
27047137 TTAAACAATT
27047147 TAATTACTAACACTTATTAAAGCTGAACTAAAAA
1 TAATTACTAACACTTATTAAAGCTGAACTAAAAA
**
27047181 TAATT-CTAACACTTATTTGAGCTGAACTAAA
1 TAATTACTAACACTTATTAAAGCTGAACTAAA
27047212 TTTAATAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 24 0.83
34 5 0.17
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (34 bp):
TAATTACTAACACTTATTAAAGCTGAACTAAAAA
Found at i:27048923 original size:13 final size:14
Alignment explanation
Indices: 27048905--27048937 Score: 52
Period size: 12 Copynumber: 2.5 Consensus size: 14
27048895 ACTCATTTTT
27048905 TCTTCTTTTTTCAA
1 TCTTCTTTTTTCAA
27048919 T-TTC-TTTTTCAA
1 TCTTCTTTTTTCAA
27048931 TCTTCTT
1 TCTTCTT
27048938 GTCTGTGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
12 9 0.53
13 6 0.35
14 2 0.12
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.67
Consensus pattern (14 bp):
TCTTCTTTTTTCAA
Found at i:27048995 original size:18 final size:17
Alignment explanation
Indices: 27048972--27049010 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
27048962 CTCTTTTTGC
27048972 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
27048990 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
27049008 TCT
1 TCT
27049011 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:27051902 original size:20 final size:19
Alignment explanation
Indices: 27051867--27051947 Score: 85
Period size: 20 Copynumber: 4.2 Consensus size: 19
27051857 AATTAAAATT
*
27051867 AATTGAGCT-AAAGAGCT-
1 AATTGAGCTCAATGAGCTG
27051884 AATAATGAGCTCAATGAGCTG
1 AAT--TGAGCTCAATGAGCTG
*
27051905 AATTGAGCTCGAATGACCTG
1 AATTGAGCTC-AATGAGCTG
*
27051925 ACTTGAGCTCAAATGAGCTG
1 AATTGAGCTC-AATGAGCTG
27051945 AAT
1 AAT
27051948 CAAGGATTTT
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
17 3 0.06
19 13 0.25
20 34 0.64
21 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (19 bp):
AATTGAGCTCAATGAGCTG
Found at i:27051913 original size:10 final size:10
Alignment explanation
Indices: 27051889--27051947 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
27051879 GAGCTAATAA
*
27051889 TGAGCTCAA-
1 TGAGCTGAAT
27051898 TGAGCTGAAT
1 TGAGCTGAAT
27051908 TGAGCTCGAA-
1 TGAGCT-GAAT
* *
27051918 TGACCTGACT
1 TGAGCTGAAT
* *
27051928 TGAGCTCAAA
1 TGAGCTGAAT
27051938 TGAGCTGAAT
1 TGAGCTGAAT
27051948 CAAGGATTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
9 10 0.26
10 25 0.66
11 3 0.08
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (10 bp):
TGAGCTGAAT
Found at i:27077061 original size:20 final size:20
Alignment explanation
Indices: 27077038--27077091 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
27077028 AGTTTTTCCC
*
27077038 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
27077058 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
27077078 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
27077092 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:27077073 original size:30 final size:30
Alignment explanation
Indices: 27077038--27077111 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
27077028 AGTTTTTCCC
27077038 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
27077068 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
27077098 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
27077112 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:27077101 original size:20 final size:20
Alignment explanation
Indices: 27077038--27077102 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
27077028 AGTTTTTCCC
* * * *
27077038 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
27077058 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
27077077 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
27077098 AGCTC
1 AGCTC
27077103 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:27079666 original size:49 final size:49
Alignment explanation
Indices: 27079606--27079880 Score: 527
Period size: 49 Copynumber: 5.7 Consensus size: 49
27079596 CAAGACAGTG
*
27079606 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTT
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
27079655 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
27079702 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
27079751 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
27079800 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
27079849 TATATATGTGATAAGGCCTAATGGCCGATGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTG
27079881 TATATATATG
Statistics
Matches: 224, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
47 47 0.21
49 177 0.79
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:27079712 original size:96 final size:96
Alignment explanation
Indices: 27079602--27080181 Score: 915
Period size: 96 Copynumber: 6.2 Consensus size: 96
27079592 CAGCCAAGAC
*
27079602 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTTATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
27079667 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
27079698 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
27079763 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
27079794 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
27079859 ATAAGGCCTAATGGCC-----GATG--TGT---
64 ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27079882 A---TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
*
27079942 AAGGCCTAATAGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
27079973 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
27080038 AAGGCCTAATGGCCGATGTGATGAATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
27080069 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTG--TATATATGTGAC
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
* * * * * *
27080132 AGGGCCGAGTGGCCAACGTGATGGATGTGAA
66 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
27080163 AGTGTATAAATTTGATAAG
1 AGTGTATATATGTGATAAG
27080182 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 13, Indels: 36
0.90 0.03 0.07
Matches are distributed among these distances:
81 25 0.06
83 47 0.10
86 4 0.01
88 4 0.01
91 4 0.01
93 4 0.01
94 100 0.22
96 191 0.42
98 75 0.17
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (96 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:27079887 original size:34 final size:34
Alignment explanation
Indices: 27079844--27079914 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
27079834 GAATGTGAAA
27079844 GTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGTATATATATGTGATAAGGCCTAATGGCCGAT
27079878 GTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GTGTATATATATGTGATAAGGCCTAATGGCCGAT
27079912 GTG
1 GTG
27079915 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.28, C:0.11, G:0.28, T:0.32
Consensus pattern (34 bp):
GTGTATATATATGTGATAAGGCCTAATGGCCGAT
Found at i:27079894 original size:132 final size:128
Alignment explanation
Indices: 27079746--27080008 Score: 481
Period size: 132 Copynumber: 2.0 Consensus size: 128
27079736 GAATGTGAAA
27079746 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27079811 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
64 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
27079876 AT
127 AT
27079878 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
27079943 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
66 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
27080006 GTG
1 GTG
27080009 ATGAATGTGA
Statistics
Matches: 130, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
128 32 0.25
130 46 0.35
132 52 0.40
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.31
Consensus pattern (128 bp):
GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
Found at i:27079941 original size:47 final size:47
Alignment explanation
Indices: 27079883--27080181 Score: 481
Period size: 47 Copynumber: 6.3 Consensus size: 47
27079873 CCGATGTGTA
27079883 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
27079930 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
27079977 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
27080024 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 --TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
27080073 TATATATGTGATAAGGCCTAATGGCCGATGTAATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
27080120 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
27080167 TATAAATTTGATAAG
1 TATATATGTGATAAG
27080182 TCCCGAAGGG
Statistics
Matches: 235, Mismatches: 15, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
47 188 0.80
49 47 0.20
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:27079951 original size:81 final size:82
Alignment explanation
Indices: 27079795--27079961 Score: 309
Period size: 83 Copynumber: 2.0 Consensus size: 82
27079785 GAATGTGAAA
27079795 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGA
*
27079860 TAAGGCCTAATGGCCGAT
65 TAAGGCCTAATAGCCGAT
27079878 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGAT
1 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGAT
27079942 AAGGCCTAATAGCCGAT
66 AAGGCCTAATAGCCGAT
27079959 GTG
1 GTG
27079962 ATGAATGTGA
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
81 31 0.37
83 52 0.63
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (82 bp):
GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGAT
AAGGCCTAATAGCCGAT
Found at i:27080045 original size:143 final size:143
Alignment explanation
Indices: 27079878--27080170 Score: 505
Period size: 143 Copynumber: 2.0 Consensus size: 143
27079868 AATGGCCGAT
27079878 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * * * *
27079943 AGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
66 AGGCCTAATAGCCGATGTAATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGT
27080008 GATGAATGTGAAA
131 GATGAATGTGAAA
27080021 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* * *
27080086 AGGCCTAATGGCCGATGTAATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGT
66 AGGCCTAATAGCCGATGTAATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGT
*
27080151 GATGGATGTGAAA
131 GATGAATGTGAAA
27080164 GTGTATA
1 GTGTATA
27080171 AATTTGATAA
Statistics
Matches: 141, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
143 141 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
GTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATAGCCGATGTAATGAATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCAACGT
GATGAATGTGAAA
Found at i:27080355 original size:37 final size:37
Alignment explanation
Indices: 27080299--27080377 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27080289 CCGAGCTCTA
* * *
27080299 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27080336 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27080373 AAGAC
1 AAGAC
27080378 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27081908 original size:40 final size:40
Alignment explanation
Indices: 27081585--27081896 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
27081575 GAGAATTGAG
27081585 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
27081625 AGTGATATATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
27081665 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
27081705 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
27081745 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
27081785 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* **
27081825 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
27081865 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
27081897 ATCATGCTGG
Statistics
Matches: 249, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 249 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:27084876 original size:47 final size:47
Alignment explanation
Indices: 27084754--27086536 Score: 3090
Period size: 47 Copynumber: 37.4 Consensus size: 47
27084744 CAGCCAAGAC
27084754 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AA
*
27084802 ATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27084850 AGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27084897 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27084944 AGTGTATATATATGTGATAATGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27084993 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085040 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG-ATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085088 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085137 AGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 A--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27085186 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27085235 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085282 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27085331 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27085380 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085427 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085474 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085521 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085568 AGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085614 AGTGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085663 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085712 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27085761 AGTGTATATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27085810 AGTGTATATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27085859 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27085906 AGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27085953 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086002 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086049 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086096 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086143 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086190 AGTGTATATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086238 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086285 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086332 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086379 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
27086426 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* ** * * * *
27086473 AGTGTATATATGTGA-CAGG-GGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
27086518 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
27086537 TCCCGAAGGG
Statistics
Matches: 1684, Mismatches: 30, Indels: 44
0.96 0.02 0.03
Matches are distributed among these distances:
45 34 0.02
46 49 0.03
47 900 0.53
48 100 0.06
49 598 0.36
51 3 0.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:27086710 original size:37 final size:37
Alignment explanation
Indices: 27086654--27086728 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
27086644 CCGAGCTCTA
* * * *
27086654 AAGACCCGACGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGACAACTACGTGTGGAGATTATGTCCAGGT
* *
27086691 AAGACCCGATAACTTCGTGTGGAGATTATGTCCAGGT
1 AAGACCCGACAACTACGTGTGGAGATTATGTCCAGGT
27086728 A
1 A
27086729 GGACTTCGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGACAACTACGTGTGGAGATTATGTCCAGGT
Found at i:27093194 original size:17 final size:18
Alignment explanation
Indices: 27093172--27093207 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
27093162 GGAATAAACA
27093172 TAGTTAA-TTAAATAAGT
1 TAGTTAATTTAAATAAGT
*
27093189 TAGTTAATTTAATTAAGT
1 TAGTTAATTTAAATAAGT
27093207 T
1 T
27093208 CAGCTCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (18 bp):
TAGTTAATTTAAATAAGT
Found at i:27094972 original size:20 final size:20
Alignment explanation
Indices: 27094947--27094991 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
27094937 TGTCCAACCG
27094947 AATTAATTGTGTCTTAA-TTT
1 AATTAATTGTGTC-TAATTTT
27094967 AATTAATTGTGTCTAATTTT
1 AATTAATTGTGTCTAATTTT
27094987 AATTA
1 AATTA
27094992 TGTGTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.53
Consensus pattern (20 bp):
AATTAATTGTGTCTAATTTT
Found at i:27099518 original size:5 final size:6
Alignment explanation
Indices: 27099470--27099523 Score: 63
Period size: 6 Copynumber: 9.0 Consensus size: 6
27099460 AATGAAAAAG
** ** *
27099470 AAGAAA AAGAAA AAGAAA GTGAAA AAGAAA AAGAAA TTGCAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
27099518 AAGAAA
1 AAGAAA
27099524 TCGAAAGGTG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.06
Consensus pattern (6 bp):
AAGAAA
Found at i:27099524 original size:18 final size:18
Alignment explanation
Indices: 27099472--27099529 Score: 89
Period size: 18 Copynumber: 3.2 Consensus size: 18
27099462 TGAAAAAGAA
*
27099472 GAAAAAGAAAAAGAAAGT
1 GAAAAAGAAAAAGAAATT
27099490 GAAAAAGAAAAAGAAATT
1 GAAAAAGAAAAAGAAATT
* *
27099508 GCAAAAGAAAAAGAAATC
1 GAAAAAGAAAAAGAAATT
27099526 GAAA
1 GAAA
27099530 GGTGAGAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.71, C:0.03, G:0.19, T:0.07
Consensus pattern (18 bp):
GAAAAAGAAAAAGAAATT
Found at i:27099582 original size:18 final size:18
Alignment explanation
Indices: 27099561--27099595 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
27099551 AGAAAAGAAA
27099561 ATTTA-AAAAGAAATTGAG
1 ATTTAGAAAA-AAATTGAG
27099579 ATTTAGAAAAAAATTGA
1 ATTTAGAAAAAAATTGA
27099596 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (18 bp):
ATTTAGAAAAAAATTGAG
Found at i:27101260 original size:12 final size:14
Alignment explanation
Indices: 27101234--27101266 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
27101224 ACTCATTTTT
27101234 TCTTCTTTCTTCAA
1 TCTTCTTTCTTCAA
27101248 T-TTCTTT-TTCAA
1 TCTTCTTTCTTCAA
27101260 TCTTCTT
1 TCTTCTT
27101267 GTCTGCATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.33
13 11 0.61
14 1 0.06
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (14 bp):
TCTTCTTTCTTCAA
Found at i:27101320 original size:20 final size:19
Alignment explanation
Indices: 27101290--27101339 Score: 66
Period size: 18 Copynumber: 2.6 Consensus size: 19
27101280 TCACTCTCAA
27101290 TCTCTTTTTTCTCTTTTTCAT
1 TCTC-TTTTTCT-TTTTTCAT
*
27101311 TCTCTTTTTCTTTTTTGAT
1 TCTCTTTTTCTTTTTTCAT
27101330 T-TCTTTTTCT
1 TCTCTTTTTCT
27101340 GTCTTCCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 7 0.25
21 4 0.14
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (19 bp):
TCTCTTTTTCTTTTTTCAT
Found at i:27101324 original size:18 final size:17
Alignment explanation
Indices: 27101296--27101339 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 17
27101286 TCAATCTCTT
27101296 TTTTCTCTTTTTCATTCTC
1 TTTT-TCTTTTTCATT-TC
*
27101315 TTTTTCTTTTTTGATTTC
1 TTTTTC-TTTTTCATTTC
27101333 TTTTTCT
1 TTTTTCT
27101340 GTCTTCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 1 0.04
18 10 0.43
19 12 0.52
ACGTcount: A:0.05, C:0.18, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTTTCTTTTTCATTTC
Found at i:27102730 original size:18 final size:20
Alignment explanation
Indices: 27102707--27102756 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
27102697 AACGGAAGAC
27102707 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
*
27102725 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
27102745 AGTAAAAAGAGA
1 AG-AAAAAGAGA
27102757 TTGAGAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 2 0.07
21 9 0.32
ACGTcount: A:0.72, C:0.02, G:0.20, T:0.06
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:27114576 original size:19 final size:19
Alignment explanation
Indices: 27114550--27114660 Score: 168
Period size: 19 Copynumber: 5.8 Consensus size: 19
27114540 AATCTTCAGG
27114550 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
27114569 GGTATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
27114588 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27114607 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
27114626 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27114645 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
27114661 AGATATGATT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 80 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:27114600 original size:38 final size:38
Alignment explanation
Indices: 27114557--27114660 Score: 190
Period size: 38 Copynumber: 2.7 Consensus size: 38
27114547 AGGGATATGC
*
27114557 AATCTTAGATATGGTATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
27114595 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
27114633 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
27114661 AGATATGATT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.39, C:0.09, G:0.13, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:27114686 original size:22 final size:21
Alignment explanation
Indices: 27114550--27114686 Score: 105
Period size: 19 Copynumber: 6.9 Consensus size: 21
27114540 AATCTTCAGG
*
27114550 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
27114569 GGTATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
27114588 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27114607 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27114626 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
27114645 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
27114667 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
27114687 TTAATTTGTA
Statistics
Matches: 100, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
19 77 0.77
22 12 0.12
23 11 0.11
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:27121534 original size:44 final size:44
Alignment explanation
Indices: 27121485--27121665 Score: 129
Period size: 44 Copynumber: 4.1 Consensus size: 44
27121475 CCCTAGACAA
*
27121485 TAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
1 TAGTGGAATAGATTGAAGATGTCAGATCTTATCTCCCTAAGCAG
** * * * * * * *
27121529 TAGTGGAGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGTTA-
1 TAGTGGAATAGATTGAAGATGTCAGATCTTATCTCCCTA-AG-CAG
* * ** *
27121574 TAGTGGAGTACATTGAAGCATGT-A-AT-TCTA-CTTCCCTGGGCAA
1 TAGTGGAATAGATTGAAG-ATGTCAGATCT-TATC-TCCCTAAGCAG
* *
27121617 CAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAG
1 TAGTGGAATAGATTGAAGATGTCAGATCTTATCTCCCTAAGCAG
27121661 TAGTG
1 TAGTG
27121666 AAGCAGATCG
Statistics
Matches: 102, Mismatches: 25, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
42 4 0.04
43 20 0.20
44 56 0.55
45 18 0.18
46 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (44 bp):
TAGTGGAATAGATTGAAGATGTCAGATCTTATCTCCCTAAGCAG
Found at i:27121573 original size:132 final size:132
Alignment explanation
Indices: 27121403--27121883 Score: 770
Period size: 132 Copynumber: 3.7 Consensus size: 132
27121393 TTGACAGCGA
*
27121403 AGCAGATCGAAGATGGCGAATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* *
27121468 TCTACTTCCCTAGACAATAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
27121533 GG
131 GG
* *
27121535 AGCAGATCGAAGATGGCGGATTTTACCTCCCTATGGTTATAGTGGAGTACATTGAAG-CATGTAA
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCA-GTAA
*
27121599 TTCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
65 TTCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
*
27121664 TGA
130 TGG
* * *
27121667 AGCAGATCGAAGATGGAGGA-TTCACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
* *
27121731 TCTACTTCCCTGGGA-AACAGTGGAATAGATTGAAGATTTTAGATCTTATCTCCCCAAGCAGTAG
66 TCTACTTCCCT-GGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAG
27121795 TGG
130 TGG
* * * *
27121798 AGTAGATCGAAGATGGCGGATTTTACCTCCCTGTAGTTACAATAGAGTACATTGAAGCCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
*
27121863 TCTACTTCCCTGAACAACAGT
66 TCTACTTCCCTGGACAACAGT
27121884 TGATACGCCC
Statistics
Matches: 322, Mismatches: 22, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
131 121 0.38
132 201 0.62
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAAT
TCTACTTCCCTGGACAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:27124900 original size:51 final size:51
Alignment explanation
Indices: 27124830--27124927 Score: 128
Period size: 51 Copynumber: 1.9 Consensus size: 51
27124820 ATTCTCAATC
27124830 TCATTTTCAATTTTCTTTTCT-ATCTCACACTCATCTTCTTTTTCTTTCATT
1 TCATTTTCAATTTTCTTTTCTCA-CTCACACTCATCTTCTTTTTCTTTCATT
* * * *
27124881 TCATTTTC-TTTTTCATTTTCTCACTCGCACTCTTTTTCTTTTTCTTT
1 TCATTTTCAATTTTC-TTTTCTCACTCACACTCATCTTCTTTTTCTTT
27124928 TTCACATGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 5 0.12
51 35 0.85
52 1 0.02
ACGTcount: A:0.12, C:0.26, G:0.01, T:0.61
Consensus pattern (51 bp):
TCATTTTCAATTTTCTTTTCTCACTCACACTCATCTTCTTTTTCTTTCATT
Found at i:27125908 original size:11 final size:11
Alignment explanation
Indices: 27125892--27125938 Score: 69
Period size: 11 Copynumber: 4.3 Consensus size: 11
27125882 AATAATAATT
27125892 AATTTTTTTTC
1 AATTTTTTTTC
27125903 AA-TTTTTTTC
1 AATTTTTTTTC
27125913 AATTTTTTTTC
1 AATTTTTTTTC
*
27125924 GAATTTTTTTAC
1 -AATTTTTTTTC
27125936 AAT
1 AAT
27125939 ATCATAATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
10 10 0.30
11 13 0.39
12 10 0.30
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.66
Consensus pattern (11 bp):
AATTTTTTTTC
Found at i:27127950 original size:44 final size:44
Alignment explanation
Indices: 27127902--27128083 Score: 111
Period size: 44 Copynumber: 4.1 Consensus size: 44
27127892 CAGGTCTTAT
27127902 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTAC
** * * * * * * *
27127946 CTCCCTCTG--GTTACAGTGGAGTACATTGAAGCTAGTA-ATTCTAC
1 CTCCCTAAGCAG-T--AGTGGAGCAGATCGAAGATGGCAGATTTTAC
* * ** ** * ** * * *
27127990 TTCCCT-GGACAACAGTGGAATAGATTGAAGATTTCAGGTCTTAT
1 CTCCCTAAG-CAGTAGTGGAGCAGATCGAAGATGGCAGATTTTAC
27128034 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTAC
27128078 CTCCCT
1 CTCCCT
27128084 CTGGTTACAG
Statistics
Matches: 95, Mismatches: 35, Indels: 16
0.65 0.24 0.11
Matches are distributed among these distances:
42 1 0.01
43 19 0.20
44 57 0.60
45 18 0.19
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (44 bp):
CTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTAC
Found at i:27128432 original size:132 final size:132
Alignment explanation
Indices: 27127603--27128418 Score: 1267
Period size: 132 Copynumber: 6.2 Consensus size: 132
27127593 GGGATCACAT
* *
27127603 CAACAGTGGAATAGATTGAAGATTTCAGATCATATCTCCCTAAGCAGTAATGGAGCAGATCGAAG
1 CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* * *
27127668 ATGGCGGATTTTACCTCTCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTACTTCCCTG
66 ATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
*
27127733 AA
131 GA
* * * *
27127735 CAACAGTGGAATAGATTGAATATTTCAGATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATCAAAG
1 CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* * * * * *
27127800 ATGACAGATTTTAACTGCCTGTGGCTATAGTGGAGTACATTGAAGCCAGTAATTTTACTTCCCTG
66 ATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
27127865 GA
131 GA
*
27127867 CAACAGTGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
1 CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* *
27127932 ATGGCAGATTTTACCTCCCTCTGGTTACAGTGGAGTACATTGAAGCTAGTAATTCTACTTCCCTG
66 ATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
27127997 GA
131 GA
*
27127999 CAACAGTGGAATAGATTGAAGATTTCAGGTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
1 CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* *
27128064 ATGGCAGATTTTACCTCCCTCTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATTTCCCTG
66 ATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
27128129 GA
131 GA
* * * *
27128131 CAATAGTGGAATAGATGGAAGACTTCAGATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAG
1 CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* *
27128196 ATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
66 ATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
*
27128261 GG
131 GA
* *
27128263 CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCTCTAAGCAGTAGTGGAGTAGATCGAAG
1 CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* * *
27128328 ATGGCGGATTTTACCTCACTGTGGTTACAGTGGAGTACATTGAAGCTAGTAA-TCATA-TCTCCC
66 ATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTC-TACT-TCCC
*
27128391 TGGT
129 TGGA
* *
27128395 CAGCAGTGGAATAGGTTGAAGATT
1 CAACAGTGGAATAGATTGAAGATT
27128419 GTAGGTCCTA
Statistics
Matches: 629, Mismatches: 53, Indels: 4
0.92 0.08 0.01
Matches are distributed among these distances:
131 3 0.00
132 626 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (132 bp):
CAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
ATGGCAGATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTACTTCCCTG
GA
Found at i:27128768 original size:19 final size:19
Alignment explanation
Indices: 27128744--27128835 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
27128734 AATCTTCAGG
27128744 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27128763 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
27128782 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27128801 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
27128820 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
27128836 AGATATGATT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 67 1.00
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:27128861 original size:22 final size:22
Alignment explanation
Indices: 27128744--27128858 Score: 94
Period size: 19 Copynumber: 5.7 Consensus size: 22
27128734 AATCTTCAGG
27128744 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
*
27128763 GATATGCAATCTTAG-ATATAAT
1 GATATGCAATCTTAGAAGAT-AT
27128785 -ATAT--AATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
27128801 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
27128820 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
27128842 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
27128859 GATTTAATTT
Statistics
Matches: 82, Mismatches: 4, Indels: 16
0.80 0.04 0.16
Matches are distributed among these distances:
16 2 0.02
17 7 0.09
19 44 0.54
21 7 0.09
22 10 0.12
23 12 0.15
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:27134210 original size:47 final size:47
Alignment explanation
Indices: 27134147--27134856 Score: 1169
Period size: 47 Copynumber: 15.1 Consensus size: 47
27134137 GAAATGATAG
* *
27134147 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27134194 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27134243 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27134290 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATA--TGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
27134334 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27134381 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27134430 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
27134477 TAAGGCATAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27134524 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
27134571 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27134620 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27134667 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27134713 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27134760 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
** * * * * * * *
27134807 -CGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27134853 TAAG
1 TAAG
27134857 TCCCGAAGGG
Statistics
Matches: 627, Mismatches: 25, Indels: 22
0.93 0.04 0.03
Matches are distributed among these distances:
44 14 0.02
45 29 0.05
46 111 0.18
47 335 0.53
49 138 0.22
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:27134488 original size:96 final size:96
Alignment explanation
Indices: 27134147--27134802 Score: 1188
Period size: 96 Copynumber: 6.9 Consensus size: 96
27134137 GAAATGATAG
*
27134147 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27134212 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
27134243 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT-GCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27134307 GTGATGAATGTGAAAGTG--TATATA--TGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
27134334 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27134399 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
27134430 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCATAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
*
27134495 GTGATGAATGTGAAAGTG--TATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* *
27134524 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27134589 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
27134620 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAT-GCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27134684 GTGATGAATGTGAAAGTG--TATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
27134713 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27134778 GTGATGAATGTGAAAGTGTATATAT
66 GTGATGAATGTGAAAGTGTATATAT
27134803 GTGACGGGCC
Statistics
Matches: 541, Mismatches: 9, Indels: 20
0.95 0.02 0.04
Matches are distributed among these distances:
91 61 0.11
92 24 0.04
93 74 0.14
94 120 0.22
95 48 0.09
96 214 0.40
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:27135031 original size:37 final size:37
Alignment explanation
Indices: 27134975--27135053 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
27134965 CCGAGCTCTA
* *
27134975 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
27135012 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27135049 AAGAC
1 AAGAC
27135054 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27137012 original size:43 final size:43
Alignment explanation
Indices: 27136964--27137074 Score: 213
Period size: 43 Copynumber: 2.6 Consensus size: 43
27136954 TGATTGTTCA
27136964 CGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTG
1 CGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTG
27137007 CGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTG
1 CGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTG
*
27137050 TGAGATTGGCACTAAGTGTGCGGGC
1 CGAGATTGGCACTAAGTGTGCGGGC
27137075 TTGAAATGCA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.23, C:0.16, G:0.36, T:0.25
Consensus pattern (43 bp):
CGAGATTGGCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTG
Found at i:27137091 original size:29 final size:29
Alignment explanation
Indices: 27137056--27137136 Score: 110
Period size: 29 Copynumber: 2.8 Consensus size: 29
27137046 GTTGTGAGAT
* *
27137056 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
27137085 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
27137114 TGGCACTAAGTGTGCGTAGTTGA
1 TGGCACTAAGTGTGCG-AGTTGA
27137137 TTATTAAGCA
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
28 5 0.11
29 36 0.78
30 5 0.11
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:27137534 original size:39 final size:40
Alignment explanation
Indices: 27137438--27137535 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 40
27137428 TTGAATGATG
*
27137438 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATA
* * * *
27137478 TCCGGACTAAGAT-CCGAAGGCATTGGTGC-GAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGC-TTGGTGCTAAGTGACCATA
*
27137517 TTCGGGCTAAGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
27137536 AGCAATCATG
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
38 1 0.02
39 16 0.33
40 24 0.50
41 7 0.15
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCATA
Found at i:27141213 original size:47 final size:47
Alignment explanation
Indices: 27141150--27141864 Score: 1169
Period size: 47 Copynumber: 15.1 Consensus size: 47
27141140 GAAATGATAG
* *
27141150 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27141197 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27141246 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
27141293 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
27141342 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
27141389 TAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27141438 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27141485 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
27141532 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
27141579 TAAGGCCTAATAGCCGATGCGATGAATGTGAAAGTGTATATATATGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
27141626 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27141673 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27141720 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27141767 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
27141814 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27141861 TAAG
1 TAAG
27141865 TCCCGAAGGG
Statistics
Matches: 625, Mismatches: 37, Indels: 12
0.93 0.05 0.02
Matches are distributed among these distances:
47 490 0.78
49 135 0.22
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:27141314 original size:96 final size:96
Alignment explanation
Indices: 27141150--27141809 Score: 1215
Period size: 96 Copynumber: 6.9 Consensus size: 96
27141140 GAAATGATAG
*
27141150 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27141215 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
27141246 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27141311 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
* *
27141342 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATGTGTGATAAGACCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27141407 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
27141438 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27141503 GTGATGAATGTGAAAGTG--TATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
27141532 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
*
27141597 GCGATGAATGTGAAAGTGTATATATA--TGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
27141626 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27141691 GTGATGAATGTGAAAGTG--TATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATATGTGA
*
27141720 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
27141785 GTGATGAATGTGAAAGTGTATATAT
66 GTGATGAATGTGAAAGTGTATATAT
27141810 GTGACGGGGC
Statistics
Matches: 546, Mismatches: 12, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
92 6 0.01
94 261 0.48
96 279 0.51
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:27142039 original size:37 final size:37
Alignment explanation
Indices: 27141983--27142061 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
27141973 CCGAGCTCTA
* *
27141983 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
* *
27142020 GAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27142057 AAGAC
1 AAGAC
27142062 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 35 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27154768 original size:499 final size:488
Alignment explanation
Indices: 27153832--27154810 Score: 1541
Period size: 499 Copynumber: 2.0 Consensus size: 488
27153822 TTTAAAAAAT
*
27153832 TAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAGATTGAAC
1 TAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAGATTAAAC
* * *
27153897 TTCTTTATTGGGCTTGGAACATCTTATTGGGCGTGTCTTCAAGAACTTGGGCTTGTGATCCGTTC
66 TTCTTGATTGGGCTTGGAACATCTTATTGGGCGTATCTTCAAGAACTTGGGCTTGTAATCCGTTC
* * *
27153962 TCTCCCGAAATTGGTTCATTGATGCTCGTAACTGAGATCCAATGTGCCTTAGCTGCAAGATTCGG
131 TCTCCCGAAATTGGTTCATTGATACTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGATTCGA
* *
27154027 TTTCTTGGACCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCAAAACAGCAAAAT
196 TTTCTTGGACCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCACTCAAAACAACAAAAT
*
27154092 TGGACCAAGATTCGGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCC
261 TGGACCAAGATTCGATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCC
*
27154157 TTTGTATATGCATCTAAGGCCTTGCTAATGAAGTCTTGAATGATTCCATTTAGTTTCATACGCAT
326 TTTGTATATGCATCTAAGGCCTTGCTAATGAAGTCTTGAACGATTCCATTTAGTTTCATACGCAT
*
27154222 TTGTCTGGCCTTTGGCCTGTTATTGGGCCTTCTGGTAATTTGAGCCCATCACGTCCTTGAGCTTG
391 TTGTCTGGCCTTTGACCTGTTATTGGGCCTTCTGGTAATTTGAGCCCATCACGTCCTTGAGCTTG
* * *
27154287 AATTGGGCTTTTGTGGCTCGTATCATAAAGAAC
456 AATTGGGCCTTAGTGACTCGTATCATAAAGAAC
* *
27154320 TAAAATTTTACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTA-ATTTAAA
1 TAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAGA-TTAAA
* * *
27154384 CTTCTTGGTTGGGCTTGGAACATCTTATTGGGTCGTATCTTCAAGAACTTGGGTTTGTAATCCTT
65 CTTCTTGATTGGGCTTGGAACATCTTATTGGG-CGTATCTTCAAGAACTTGGGCTTGTAATCCGT
** * *
27154449 TCTCTTTCGAAATTGGTTCATTGATACTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGGTTT
129 TCTCTCCCGAAATTGGTTCATTGATACTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGATTC
27154514 GATTTCTTGGACCAAGATTTTTCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCACTCA
194 GATTTCTTGGA-C---------CAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCACTCA
*
27154579 AAACAACAAGATTGGACCAAGATTCGATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGA
249 AAACAACAAAATTGGACCAAGATTCGATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGA
*
27154644 TTTTCTTTTTCCTTTGT-TATGCATCTAAGGCCTTGCTAATGAAGTCTTGAACGGTTCCATTTAG
314 TTTTCTTTTTCCTTTGTATATGCATCTAAGGCCTTGCTAATGAAGTCTTGAACGATTCCATTTAG
*
27154708 TTTCATACGCATTT-TCTTGGCCTTTGACCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCATCA
379 TTTCATACGCATTTGTC-TGGCCTTTGACCT-GTTATTGGGCCTTCTGGTAATTTGAGCCCATCA
* * *
27154772 TGTTCTTGAGCTTGAGTTGGGCCTTAGTGACTCGTATCA
442 CGTCCTTGAGCTTGAATTGGGCCTTAGTGACTCGTATCA
27154811 AGTATCATGG
Statistics
Matches: 447, Mismatches: 30, Indels: 17
0.90 0.06 0.03
Matches are distributed among these distances:
487 1 0.00
488 89 0.20
489 97 0.22
490 1 0.00
497 2 0.00
498 71 0.16
499 186 0.42
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.38
Consensus pattern (488 bp):
TAAAACTTAACAAATTGGGCCACTTTGACAATTTGGCCTGATTTTCAACTAAGTCTAGATTAAAC
TTCTTGATTGGGCTTGGAACATCTTATTGGGCGTATCTTCAAGAACTTGGGCTTGTAATCCGTTC
TCTCCCGAAATTGGTTCATTGATACTCGTAACTGAGATCCAATGCGCCTTAGCTGCAAGATTCGA
TTTCTTGGACCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCACTCAAAACAACAAAAT
TGGACCAAGATTCGATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTTTTTCC
TTTGTATATGCATCTAAGGCCTTGCTAATGAAGTCTTGAACGATTCCATTTAGTTTCATACGCAT
TTGTCTGGCCTTTGACCTGTTATTGGGCCTTCTGGTAATTTGAGCCCATCACGTCCTTGAGCTTG
AATTGGGCCTTAGTGACTCGTATCATAAAGAAC
Found at i:27156789 original size:20 final size:20
Alignment explanation
Indices: 27156764--27156808 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
27156754 TAAATACACA
27156764 TAATTAAAA-ATAGACACAAT
1 TAATTAAAATA-AGACACAAT
**
27156784 TAATTAAGTTAAGACACAAT
1 TAATTAAAATAAGACACAAT
27156804 TAATT
1 TAATT
27156809 CGGTTGGACA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.53, C:0.09, G:0.07, T:0.31
Consensus pattern (20 bp):
TAATTAAAATAAGACACAAT
Found at i:27157066 original size:30 final size:30
Alignment explanation
Indices: 27157032--27157091 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
27157022 TCTAAATGGA
*
27157032 ATTGAGCT-AAATTTGAGCTGATTTGAGCTC
1 ATTGAGCTGAAA-TGGAGCTGATTTGAGCTC
* *
27157062 ATTGAGCTGAAATGGAGCTTATTTTAGCTC
1 ATTGAGCTGAAATGGAGCTGATTTGAGCTC
27157092 GCAACAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (30 bp):
ATTGAGCTGAAATGGAGCTGATTTGAGCTC
Found at i:27162772 original size:79 final size:80
Alignment explanation
Indices: 27162609--27162833 Score: 246
Period size: 79 Copynumber: 2.8 Consensus size: 80
27162599 TTGAATGATG
* * * * *
27162609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACCGGGCTAAG-TCCCGAAGGCA
*
27162671 TTTGTGCGAGATACTAAT
63 TTTGTGCGAGATACTAAA
* *
27162689 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGGGATACTA-ATTCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACCGGGCTAAGTCCCGAAGGCAT
*
27162751 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
** * *
27162768 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
27162833 G
66 G
27162834 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 67 0.54
80 46 0.37
81 9 0.07
82 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:27162825 original size:119 final size:120
Alignment explanation
Indices: 27162609--27162833 Score: 289
Period size: 119 Copynumber: 1.9 Consensus size: 120
27162599 TTGAATGATG
*
27162609 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
27162674 GTGCGAGATACTAATTCCGGACTAAGATCCGAAGGCATTTGTGCGGGATACTAAT
66 GTGCGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGTGCGGGATACTAAT
* * * **
27162729 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
27162791 TTGTGCGAGTTACT-ATAACCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGATACTAAT-ACCGGACTAAGAT-CCGAAGGCATTTG
27162834 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
118 4 0.04
119 69 0.76
120 18 0.20
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGTGCGGGATACTAAT
Found at i:27162840 original size:40 final size:40
Alignment explanation
Indices: 27162609--27162833 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
27162599 TTGAATGATG
* * * *
27162609 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
27162649 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
27162689 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGGGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
27162729 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
27162768 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
27162809 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
27162834 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27162855 original size:79 final size:78
Alignment explanation
Indices: 27162616--27162866 Score: 244
Period size: 79 Copynumber: 3.2 Consensus size: 78
27162606 ATGTCCGGGC
* * * *
27162616 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
27162679 AGATACTAATTCCGGAC
64 AGATACTAA-TCCGG-T
* *
27162696 TAAGAT-CCGAAGGCATTTGTGCGGGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
27162758 AGTTACTAAATCCGGGT
64 AGATACT-AATCC-GGT
* * **
27162775 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
27162840 -TAGCTATATCCGGT
66 ATA-CTA-ATCCGGT
* *
27162854 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
27162867 TACGTGATTT
Statistics
Matches: 144, Mismatches: 16, Indels: 23
0.79 0.09 0.13
Matches are distributed among these distances:
78 1 0.01
79 80 0.56
80 55 0.38
81 8 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
ATACTAATCCGGT
Found at i:27170690 original size:71 final size:77
Alignment explanation
Indices: 27170556--27170768 Score: 208
Period size: 71 Copynumber: 2.8 Consensus size: 77
27170546 ATGATGTCCG
* * * * * *
27170556 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-CCCGAAGGCATTTGTG
*
27170620 CGAGATACTAATTCC
63 CGAGATACTAAATCC
*
27170635 -GCTAAG-CCGAAGGCA-TTGTGC-AG-TACTA-ATTCCGGGCTAAG-CCGAAGGCATTTGTGCG
1 GGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGCCCGAAGGCATTTGTGCG
*
27170693 AGTTACTAAATCC
65 AGATACTAAATCC
* *
27170706 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTG
1 -GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAG-CCCGAAGGCATTTG
27170769 AACGAGGAGC
Statistics
Matches: 114, Mismatches: 8, Indels: 23
0.79 0.06 0.16
Matches are distributed among these distances:
71 28 0.25
72 1 0.01
73 18 0.16
74 2 0.02
75 9 0.08
76 20 0.18
77 2 0.02
78 20 0.18
79 1 0.01
80 13 0.11
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
GGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGCCCGAAGGCATTTGTGCGA
GATACTAAATCC
Found at i:27170727 original size:40 final size:39
Alignment explanation
Indices: 27170552--27170768 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 39
27170542 TTGAATGATG
* * * *
27170552 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
27170592 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
27170632 TCC--GCTAAG-CCGAAGGCA-TTGTGC-AG-TACTAAT
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
27170665 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
27170703 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
27170744 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
27170769 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 12, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
33 10 0.06
34 2 0.01
35 21 0.14
36 15 0.10
37 2 0.01
38 21 0.14
40 74 0.48
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27170782 original size:40 final size:40
Alignment explanation
Indices: 27170666--27170787 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 40
27170656 AGTACTAATT
** *
27170666 CCGGGCTAAG--CCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
27170703 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* *
27170744 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
27170784 CCGG
1 CCGG
27170788 TTAAATTCCG
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
38 9 0.12
39 1 0.01
40 61 0.84
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:27170786 original size:80 final size:74
Alignment explanation
Indices: 27170641--27170801 Score: 164
Period size: 80 Copynumber: 2.1 Consensus size: 74
27170631 TTCCGCTAAG
* ** *
27170641 CCGAAGGCATTGTGCAGTACTAATTCCGGGCTAAGCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 CCGAAGGCATTGTGCAGTACTAATACCGGGCTAAGCCGAAGGCATTTGAACGAGTGACTAAATCC
*
27170706 GGGTTAAGTC
66 -GGTTAAATC
*
27170716 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCA-TTGTGC-AG-TACTAAT-ACCGGGCTAAG--CCGAAGGCATTTGAACGAGTGA-C
* *
27170779 TATATCCGGTTAAATT
59 TAAATCCGGTTAAATC
27170795 CCGAAGG
1 CCGAAGG
27170802 TACGTGATTT
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
75 9 0.13
76 6 0.08
77 4 0.06
78 13 0.18
79 15 0.21
80 24 0.34
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (74 bp):
CCGAAGGCATTGTGCAGTACTAATACCGGGCTAAGCCGAAGGCATTTGAACGAGTGACTAAATCC
GGTTAAATC
Found at i:27181277 original size:38 final size:36
Alignment explanation
Indices: 27181190--27181283 Score: 102
Period size: 37 Copynumber: 2.5 Consensus size: 36
27181180 TTTTTGAAAA
*
27181190 TTTTTTTCT-TTTTCTTTTAAACTTTGATATTCGAAT
1 TTTTTTTCTGTTTT-TTTTAAACTTTGATATTAGAAT
*
27181226 TTTTTTTGCTGTTTTTTTTAAACTTTGATAATTATATAT
1 TTTTTTT-CTGTTTTTTTTAAACTTTGAT-ATTAGA-AT
27181265 TTTTATTT-TGTTTGTTTTT
1 TTTT-TTTCTGTTT-TTTTT
27181284 TTCTTTTTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
36 7 0.14
37 16 0.32
38 13 0.26
39 11 0.22
40 3 0.06
ACGTcount: A:0.18, C:0.06, G:0.07, T:0.68
Consensus pattern (36 bp):
TTTTTTTCTGTTTTTTTTAAACTTTGATATTAGAAT
Found at i:27185955 original size:40 final size:40
Alignment explanation
Indices: 27185871--27186093 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
27185861 TTGAATGATG
* * *
27185871 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
27185910 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
27185951 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAG-TACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
27185988 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
27186028 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
27186067 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
27186094 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 12, Indels: 14
0.86 0.06 0.07
Matches are distributed among these distances:
37 17 0.10
38 19 0.12
39 20 0.12
40 98 0.60
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:27186006 original size:77 final size:79
Alignment explanation
Indices: 27185871--27186093 Score: 267
Period size: 77 Copynumber: 2.8 Consensus size: 79
27185861 TTGAATGATG
* * * * *
27185871 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
27185934 TTGTGCGAGATACTAAT
63 TTGTGCGAGATACTAAA
* *
27185951 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAG-TACTA-ATTCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCTAAGTCCCGAAGGCATTT
*
27186013 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* *
27186028 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
27186093 G
65 G
27186094 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
76 2 0.02
77 47 0.38
78 10 0.08
79 26 0.21
80 39 0.31
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:27186124 original size:79 final size:79
Alignment explanation
Indices: 27185871--27186126 Score: 222
Period size: 80 Copynumber: 3.3 Consensus size: 79
27185861 TTGAATGATG
* * * * *
27185871 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGTTAAATCCCGAAGGCATTTGTGC-GAGT-ACTAATA-CCGGGCTAAG-TCCCGAAGGCA
** * *
27185933 TTTGTGCGAGATACTAAT
62 TTTGAACGAGTTACTAAA
* * * *
27185951 TCCGGGCT-AA-GCCGAAGGCATTTGTGCGAGTACTAATTCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTACTAATACCGGGCTAAGTCCCGAAGGCATTTG
**
27186014 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
* *
27186028 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAG-TACTAAT-ACCGGGCTAAGTCCCGAAGGCATT
*
27186092 TGAACGAG-TAGCTATA
64 TGAACGAGTTA-CTAAA
*
27186108 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAATCCCGAAGG
27186127 TACGTGATTT
Statistics
Matches: 148, Mismatches: 20, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
76 1 0.01
77 42 0.28
78 14 0.09
79 45 0.30
80 46 0.31
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTACTAATACCGGGCTAAGTCCCGAAGGCATTTG
AACGAGTTACTAAA
Found at i:27193884 original size:79 final size:80
Alignment explanation
Indices: 27193774--27193945 Score: 217
Period size: 79 Copynumber: 2.2 Consensus size: 80
27193764 GGACTAAGAT
* *
27193774 CCGAAGGCATTTTTGCGAGATACTAATTCCGGACTAAGAT-CCGAAGGCATTTGTGC-AGGATAC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAA-ATCCCGAAGGCATTTGTGCGA-GATAC
*
27193837 TA-ATTCCGGGCTAAG-C
64 TACA-ACCGGGCTAAGTC
* ** *
27193853 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
27193918 CAACCGGGCTATGTC
66 CAACCGGGCTAAGTC
27193933 CCGAAGGCATTTG
1 CCGAAGGCATTTG
27193946 AACGAGTAGC
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 63 0.78
80 16 0.20
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGACTAAATCCCGAAGGCATTTGTGCGAGATACTA
CAACCGGGCTAAGTC
Found at i:27193937 original size:119 final size:120
Alignment explanation
Indices: 27193721--27193945 Score: 280
Period size: 119 Copynumber: 1.9 Consensus size: 120
27193711 TTGAATGATG
*
27193721 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
27193786 TTGCGAGATACTAATTCCGGACTAAGATCCGAAGGCATTTGTGCAGGATACTAAT
66 GTGCGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGTGCAGGATACTAAT
* * * **
27193841 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAA-ATCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
27193903 TTGTGCGAGTTACTACA-ACCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGATACTA-ATACCGGACTAAGAT-CCGAAGGCATTTG
27193946 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
118 3 0.03
119 68 0.76
120 19 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGACTAAGATCCGAAGGCATTTGTGCAGGATACTAAT
Found at i:27193952 original size:40 final size:40
Alignment explanation
Indices: 27193721--27193945 Score: 237
Period size: 40 Copynumber: 5.7 Consensus size: 40
27193711 TTGAATGATG
* * * *
27193721 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
27193761 TCCGGACTAAGAT-CCGAAGGCATTTTTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
27193801 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-AGGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGA-GTTACTAAA
27193841 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
27193880 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTACAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
27193921 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
27193946 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 33 0.20
40 119 0.74
41 9 0.06
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27193976 original size:79 final size:79
Alignment explanation
Indices: 27193813--27193978 Score: 196
Period size: 79 Copynumber: 2.1 Consensus size: 79
27193803 CGGACTAAGA
* **
27193813 TCCGAAGGCATTTGTGCAGGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCAGGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
*
27193878 AATCCGGGTTAAAT
66 AATCCGGGTAAAAT
* * *
27193892 CCCGAAGGCATTTGTGC-GAGTTACTACA-ACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TA
1 TCCGAAGGCATTTGTGCAG-GATACTA-ATACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA
*
27193954 GCTATATCC-GGTAAAAT
63 -CTAAATCCGGGTAAAAT
27193971 TCCGAAGG
1 TCCGAAGG
27193979 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 1 0.01
79 47 0.64
80 26 0.35
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCAGGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTA
AATCCGGGTAAAAT
Found at i:27196295 original size:16 final size:18
Alignment explanation
Indices: 27196261--27196297 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
27196251 TAGATTTGTA
27196261 AAAAAAAATTCGTATATT
1 AAAAAAAATTCGTATATT
*
27196279 AAAAAAAGTT-GTA-ATT
1 AAAAAAAATTCGTATATT
27196295 AAA
1 AAA
27196298 TTACATGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 6 0.33
17 3 0.17
18 9 0.50
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (18 bp):
AAAAAAAATTCGTATATT
Found at i:27199237 original size:25 final size:24
Alignment explanation
Indices: 27199209--27199264 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
27199199 AAAAAAATTC
**
27199209 AAAAAAAGTGAAAAAAA-TCGAGCA
1 AAAAAAAAAGAAAAAAAGT-GAGCA
27199233 AAAAAAAAAGAAAAAAAGGTGAGCA
1 AAAAAAAAAGAAAAAAA-GTGAGCA
27199258 AAAAAAA
1 AAAAAAA
27199265 TCAAGTTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 15 0.54
25 12 0.43
26 1 0.04
ACGTcount: A:0.73, C:0.05, G:0.16, T:0.05
Consensus pattern (24 bp):
AAAAAAAAAGAAAAAAAGTGAGCA
Found at i:27200143 original size:13 final size:14
Alignment explanation
Indices: 27200127--27200169 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
27200117 AAATAGTGAG
27200127 TGAAAAAAGAAAA-
1 TGAAAAAAGAAAAT
27200140 TGAAGAAAAGAAAAT
1 TGAA-AAAAGAAAAT
27200155 TG-AAAAAG-AAAT
1 TGAAAAAAGAAAAT
27200167 TGA
1 TGA
27200170 GATTGAGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 6 0.22
13 9 0.33
14 10 0.37
15 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.19, T:0.14
Consensus pattern (14 bp):
TGAAAAAAGAAAAT
Found at i:27200148 original size:14 final size:13
Alignment explanation
Indices: 27200127--27200165 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
27200117 AAATAGTGAG
27200127 TGAAAAAAGAAAA
1 TGAAAAAAGAAAA
27200140 TGAAGAAAAGAAAA
1 TGAA-AAAAGAAAA
27200154 TTG-AAAAAGAAA
1 -TGAAAAAAGAAA
27200166 TTGAGATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.50
14 10 0.42
15 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.10
Consensus pattern (13 bp):
TGAAAAAAGAAAA
Found at i:27200164 original size:27 final size:28
Alignment explanation
Indices: 27200130--27200195 Score: 82
Period size: 29 Copynumber: 2.4 Consensus size: 28
27200120 TAGTGAGTGA
27200130 AAAAAGAAAATGA-A-GAAAAGAAAATTG
1 AAAAAGAAAATGAGATGAAAA-AAAATTG
* *
27200157 AAAAAGAAATTGAGATTGAGAAAAAATTG
1 AAAAAGAAAATGAGA-TGAAAAAAAATTG
27200186 AAAAAGAAAA
1 AAAAAGAAAA
27200196 AGATGTTGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
27 12 0.36
28 1 0.03
29 16 0.48
30 4 0.12
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.14
Consensus pattern (28 bp):
AAAAAGAAAATGAGATGAAAAAAAATTG
Found at i:27200185 original size:17 final size:18
Alignment explanation
Indices: 27200153--27200186 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
27200143 AGAAAAGAAA
27200153 ATTGAAAAAGAAATTGAG
1 ATTGAAAAAGAAATTGAG
*
27200171 ATTGAGAAA-AAATTGA
1 ATTGAAAAAGAAATTGA
27200187 AAAAGAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.21, T:0.24
Consensus pattern (18 bp):
ATTGAAAAAGAAATTGAG
Found at i:27200204 original size:29 final size:30
Alignment explanation
Indices: 27200150--27200213 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
27200140 TGAAGAAAAG
**
27200150 AAAATTGAAAAAGAAATTGAGATTG-AGAA
1 AAAATTGAAAAAGAAAAAGAGATTGAAGAA
27200179 AAAATTGAAAAAGAAAAAGATG-TTGAAGAA
1 AAAATTGAAAAAGAAAAAGA-GATTGAAGAA
*
27200209 GAAAT
1 AAAAT
27200214 GAGAGAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 21 0.70
30 9 0.30
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.19
Consensus pattern (30 bp):
AAAATTGAAAAAGAAAAAGAGATTGAAGAA
Found at i:27206127 original size:18 final size:18
Alignment explanation
Indices: 27206108--27206143 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
27206098 TTTCTTTGTC
*
27206108 AATTTTTTTCTCAATCTCA
1 AATTCTTTT-TCAATCTCA
27206127 AATTCTTTTTCAATCTC
1 AATTCTTTTTCAATCTC
27206144 TTTTCGCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.22, G:0.00, T:0.53
Consensus pattern (18 bp):
AATTCTTTTTCAATCTCA
Found at i:27206198 original size:15 final size:17
Alignment explanation
Indices: 27206178--27206220 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
27206168 TTTTGATATC
27206178 TCATTTTCATC-TT-TT
1 TCATTTTCATCATTCTT
*
27206193 TCATTTTCTTCATTTCTT
1 TCATTTTCATCA-TTCTT
27206211 TCATTTTCAT
1 TCATTTTCAT
27206221 TTTCTTTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 10 0.43
17 2 0.09
18 11 0.48
ACGTcount: A:0.14, C:0.21, G:0.00, T:0.65
Consensus pattern (17 bp):
TCATTTTCATCATTCTT
Found at i:27206207 original size:24 final size:24
Alignment explanation
Indices: 27206182--27206226 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
27206172 GATATCTCAT
*
27206182 TTTC-ATCTTTTTCATTTTCTTCA
1 TTTCTATCATTTTCATTTTCTTCA
*
27206205 TTTCTTTCATTTTCATTTTCTT
1 TTTCTATCATTTTCATTTTCTT
27206227 TGTTCTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTCTATCATTTTCATTTTCTTCA
Found at i:27206236 original size:24 final size:23
Alignment explanation
Indices: 27206190--27206234 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
27206180 ATTTTCATCT
27206190 TTTTCATTTTCTTCATTTCTTTCA
1 TTTTCATTTTCTT-ATTTCTTTCA
27206214 TTTTCATTTTCTT-TGTTCTTT
1 TTTTCATTTTCTTAT-TTCTTT
27206235 TCTCGCTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 1 0.05
23 6 0.30
24 13 0.65
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTTCATTTTCTTATTTCTTTCA
Found at i:27207294 original size:12 final size:12
Alignment explanation
Indices: 27207277--27207315 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
27207267 ACAAACTTTG
27207277 TTTTTTGAATTT
1 TTTTTTGAATTT
27207289 TTTTTTGAA-TT
1 TTTTTTGAATTT
27207300 TTTTTTGAATTT
1 TTTTTTGAATTT
27207312 TTTT
1 TTTT
27207316 AAATTCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.42
12 15 0.58
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (12 bp):
TTTTTTGAATTT
Found at i:27207325 original size:11 final size:10
Alignment explanation
Indices: 27207277--27207325 Score: 53
Period size: 10 Copynumber: 4.6 Consensus size: 10
27207267 ACAAACTTTG
27207277 TTTTTTGAATTT
1 TTTTTTGAA--T
27207289 TTTTTTGAATT
1 TTTTTTGAA-T
27207300 TTTTTTGAAT
1 TTTTTTGAAT
*
27207310 TTTTTTAAAT
1 TTTTTTGAAT
*
27207320 TCTTTT
1 TTTTTT
27207326 ACAATACCGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
10 15 0.43
11 11 0.31
12 9 0.26
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.73
Consensus pattern (10 bp):
TTTTTTGAAT
Found at i:27207325 original size:12 final size:11
Alignment explanation
Indices: 27207277--27207315 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
27207267 ACAAACTTTG
27207277 TTTTTTGAATTT
1 TTTTTTGAA-TT
27207289 TTTTTTGAATT
1 TTTTTTGAATT
27207300 TTTTTTGAATT
1 TTTTTTGAATT
27207311 TTTTT
1 TTTTT
27207316 AAATTCTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTTTGAATT
Found at i:27207325 original size:23 final size:22
Alignment explanation
Indices: 27207277--27207325 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
27207267 ACAAACTTTG
*
27207277 TTTTTTGAATTTTTTTTTGAATT
1 TTTTTTGAA-TTTTTTTTAAATT
27207300 TTTTTTGAA-TTTTTTTAAATT
1 TTTTTTGAATTTTTTTTAAATT
*
27207321 CTTTT
1 TTTTT
27207326 ACAATACCGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 15 0.62
23 9 0.38
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.73
Consensus pattern (22 bp):
TTTTTTGAATTTTTTTTAAATT
Found at i:27212261 original size:27 final size:27
Alignment explanation
Indices: 27212231--27212435 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
27212221 ATATTGAGTC
* * * *
27212231 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
27212258 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
27212285 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
27212313 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
27212340 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
27212367 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
27212394 CGCACACTTAGTGCTACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
27212421 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27212436 GTACAATTTA
Statistics
Matches: 157, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 24 0.15
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:27221271 original size:6 final size:6
Alignment explanation
Indices: 27221262--27221331 Score: 72
Period size: 6 Copynumber: 12.0 Consensus size: 6
27221252 AATGAAAAAG
** * * *
27221262 AAGAAA AAGAAA AAGAAA GTGAAG AAG-AA AGGAAA ATGAAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA
*
27221309 AAGAAA TA-AAA AAGAAA AAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA
27221332 TAAAAAATGT
Statistics
Matches: 51, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
5 7 0.14
6 44 0.86
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (6 bp):
AAGAAA
Found at i:27221315 original size:17 final size:17
Alignment explanation
Indices: 27221249--27221337 Score: 96
Period size: 17 Copynumber: 5.3 Consensus size: 17
27221239 ACATTGTAAT
27221249 AAAAATGAAAAAG-AA-G
1 AAAAA-GAAAAAGAAATG
27221265 AAAAAGAAAAAGAAAGTG
1 AAAAAGAAAAAGAAA-TG
* *
27221283 AAGAAG-AAAGGAAAATG
1 AAAAAGAAAAAG-AAATG
*
27221300 AAAAAGAAAAAGAAATA
1 AAAAAGAAAAAGAAATG
27221317 AAAAAGAAAAAGAAAT-
1 AAAAAGAAAAAGAAATG
27221333 AAAAA
1 AAAAA
27221338 ATGTGAGAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
15 7 0.11
16 12 0.19
17 31 0.49
18 13 0.21
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (17 bp):
AAAAAGAAAAAGAAATG
Found at i:27221326 original size:23 final size:23
Alignment explanation
Indices: 27221262--27221331 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
27221252 AATGAAAAAG
** *
27221262 AAGAAAAAGAAAAAGAAAGTGAAG
1 AAGAAAAA-AAAAAGAAAAAGAAA
** *
27221286 AAGAAAGGAAAATGAAAAAGAAA
1 AAGAAAAAAAAAAGAAAAAGAAA
*
27221309 AAGAAATAAAAAAGAAAAAGAAA
1 AAGAAAAAAAAAAGAAAAAGAAA
27221332 TAAAAAATGT
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
23 31 0.84
24 6 0.16
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (23 bp):
AAGAAAAAAAAAAGAAAAAGAAA
Found at i:27221391 original size:18 final size:18
Alignment explanation
Indices: 27221370--27221404 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
27221360 AGAAAAGAAA
27221370 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
27221388 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
27221405 AAAAGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:27221413 original size:16 final size:18
Alignment explanation
Indices: 27221392--27221430 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
27221382 ATTGAGATTG
27221392 AGAAAAA-A-ATTGAAAA
1 AGAAAAAGATATTGAAAA
*
27221408 AGAAAAAGATGTTGAAAA
1 AGAAAAAGATATTGAAAA
27221426 AGAAA
1 AGAAA
27221431 TGAGAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 1 0.05
18 12 0.60
ACGTcount: A:0.69, C:0.00, G:0.18, T:0.13
Consensus pattern (18 bp):
AGAAAAAGATATTGAAAA
Found at i:27222914 original size:14 final size:14
Alignment explanation
Indices: 27222895--27222921 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27222885 TGCATCTCCC
27222895 CATGCATGAATCTA
1 CATGCATGAATCTA
27222909 CATGCATGAATCT
1 CATGCATGAATCT
27222922 GCCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:27230277 original size:40 final size:40
Alignment explanation
Indices: 27230251--27230436 Score: 266
Period size: 40 Copynumber: 4.7 Consensus size: 40
27230241 TGATTACTCT
* * * *
27230251 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* * * *
27230291 TCGAGG-TTTAGCACGGATATATTACTAGCACGAATGCTCA
1 TCG-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
27230331 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
27230371 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
27230411 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
27230437 CTCAATTCTC
Statistics
Matches: 129, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:27231698 original size:37 final size:37
Alignment explanation
Indices: 27231648--27231726 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27231638 TTATTACGAA
* * *
27231648 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27231685 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27231722 GTCTT
1 GTCTT
27231727 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27231923 original size:47 final size:47
Alignment explanation
Indices: 27231845--27232842 Score: 1708
Period size: 47 Copynumber: 20.9 Consensus size: 47
27231835 CCCTTCGGGA
* * * * *
27231845 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27231892 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27231939 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27231986 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27232035 CTTATTACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232082 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27232180 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232227 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232274 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232321 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27232368 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27232417 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232464 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27232513 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27232607 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27232654 CTTATCACATATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27232703 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232750 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27232799 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
27232843 CGGCATACTA
Statistics
Matches: 908, Mismatches: 31, Indels: 24
0.94 0.03 0.02
Matches are distributed among these distances:
47 585 0.64
49 323 0.36
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27232045 original size:96 final size:96
Alignment explanation
Indices: 27231845--27232842 Score: 1760
Period size: 96 Copynumber: 10.5 Consensus size: 96
27231835 CCCTTCGGGA
* * * * * * *
27231845 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
27231908 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
27231939 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
27232004 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
27232035 CTTATTACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
27232100 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
27232131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
*
27232194 ACACTTTCATATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
27232227 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
27232290 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
27232321 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
27232386 ACTTTCACATTCATCACATCGGCCATTAGGT
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
27232417 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
27232482 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
27232513 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCGTTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
27232576 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
27232607 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
*
27232672 ACTTTCACATTTATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
27232703 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
27232768 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
27232799 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
27232843 CGGCATACTA
Statistics
Matches: 867, Mismatches: 29, Indels: 14
0.95 0.03 0.02
Matches are distributed among these distances:
94 278 0.32
96 543 0.63
98 46 0.05
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27232364 original size:286 final size:285
Alignment explanation
Indices: 27231845--27232842 Score: 1766
Period size: 286 Copynumber: 3.5 Consensus size: 285
27231835 CCCTTCGGGA
* * * * * * *
27231845 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
27231909 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
27231974 CGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
131 CGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
27232039 TTACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTT
194 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
27232104 TCACATTCATCACATCGGCCATTAGGC
259 TCACATTCATCACATCGGCCATTAGGC
27232131 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATA
*
27232195 CACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
64 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
27232260 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
129 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
27232325 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
194 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTT
*
27232390 TCACATTCATCACATCGGCCATTAGGT
259 TCACATTCATCACATCGGCCATTAGGC
*
27232417 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
27232482 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACGTTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
27232547 TCGGCCGTTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
130 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
27232612 CACGTATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACATATATATACACTTT
195 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTT
*
27232677 CACATTTATCACATCGGCCATTAGGC
260 CACATTCATCACATCGGCCATTAGGC
*
27232703 CTTATCACATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
27232768 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
27232833 TCGGCCATTA
130 TCGGCCATTA
27232843 CGGCATACTA
Statistics
Matches: 687, Mismatches: 21, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
284 46 0.07
286 508 0.74
288 133 0.19
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (285 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
ACATTCATCACATCGGCCATTAGGC
Found at i:27234827 original size:13 final size:13
Alignment explanation
Indices: 27234809--27234834 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27234799 TGTGTTTTGC
27234809 TGCTGTTGTTTAA
1 TGCTGTTGTTTAA
27234822 TGCTGTTGTTTAA
1 TGCTGTTGTTTAA
27234835 ATACAGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (13 bp):
TGCTGTTGTTTAA
Found at i:27236391 original size:12 final size:11
Alignment explanation
Indices: 27236348--27236390 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
27236338 TAGTAGTTTC
*
27236348 TCAAAAAAAAC
1 TCAAAAAAAAT
*
27236359 TCGAAAAAAAT
1 TCAAAAAAAAT
27236370 TCAAAAAAAAT
1 TCAAAAAAAAT
27236381 TCAAAAAAAA
1 TCAAAAAAAA
27236391 AAATTGGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.72, C:0.12, G:0.02, T:0.14
Consensus pattern (11 bp):
TCAAAAAAAAT
Found at i:27236455 original size:15 final size:16
Alignment explanation
Indices: 27236432--27236474 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
27236422 GATATCAAGT
27236432 TGAAAAAAAAAATTCG
1 TGAAAAAAAAAATTCG
27236448 TGAAAAAAAAAATTCG
1 TGAAAAAAAAAATTCG
27236464 TGAAAAAAAAA
1 TGAAAAAAAAA
27236475 GAAGAAGCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.67, C:0.05, G:0.12, T:0.16
Consensus pattern (16 bp):
TGAAAAAAAAAATTCG
Found at i:27246011 original size:15 final size:15
Alignment explanation
Indices: 27245991--27246024 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
27245981 TCTCTTTCAA
*
27245991 TTTCTTTTTCCACTC
1 TTTCTTTTTACACTC
*
27246006 TTTCTTTTTACTCTC
1 TTTCTTTTTACACTC
27246021 TTTC
1 TTTC
27246025 AATTTCTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTCTTTTTACACTC
Found at i:27246049 original size:13 final size:12
Alignment explanation
Indices: 27245972--27246047 Score: 50
Period size: 12 Copynumber: 6.3 Consensus size: 12
27245962 ACTCGATTTC
*
27245972 TTTTCAACCTCT
1 TTTTCAATCTCT
* *
27245984 CTTTCAATTTCT
1 TTTTCAATCTCT
*
27245996 TTTTCCACTCTTTCT
1 TTTT-CAATC--TCT
27246011 TTTT--A-CTCT
1 TTTTCAATCTCT
* *
27246020 CTTTCAATTTCT
1 TTTTCAATCTCT
27246032 TTTTCAATCTCT
1 TTTTCAATCTCT
27246044 TTTT
1 TTTT
27246048 TCTTTTCACT
Statistics
Matches: 47, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
9 6 0.13
11 2 0.04
12 29 0.62
13 3 0.06
15 7 0.15
ACGTcount: A:0.13, C:0.26, G:0.00, T:0.61
Consensus pattern (12 bp):
TTTTCAATCTCT
Found at i:27246132 original size:12 final size:12
Alignment explanation
Indices: 27246090--27246131 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
27246080 TTTTCATCTT
27246090 TTTCTTTTTC-A
1 TTTCTTTTTCAA
27246101 TTTC--TTTCAA
1 TTTCTTTTTCAA
27246111 TTTCTTTTTCAA
1 TTTCTTTTTCAA
27246123 TGTTCTTTT
1 T-TTCTTTT
27246132 CTCGCTCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 4 0.15
10 5 0.19
11 4 0.15
12 7 0.26
13 7 0.26
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:27247321 original size:12 final size:12
Alignment explanation
Indices: 27247269--27247343 Score: 51
Period size: 12 Copynumber: 5.8 Consensus size: 12
27247259 TACAAAATAA
* *
27247269 TTTTTTTTGAAA
1 TTTTTTTTCAAT
*
27247281 TATTTTTTCAAT
1 TTTTTTTTCAAT
* *
27247293 TAAATTTTTATCGAT
1 T---TTTTTTTCAAT
27247308 TTTTTTTTCAAT
1 TTTTTTTTCAAT
*
27247320 TTCTTTTTTGAAT
1 TT-TTTTTTCAAT
27247333 ATTTTTTTTCA
1 -TTTTTTTTCA
27247344 TAATGACTTA
Statistics
Matches: 48, Mismatches: 10, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
12 21 0.44
13 16 0.33
14 2 0.04
15 9 0.19
ACGTcount: A:0.23, C:0.07, G:0.04, T:0.67
Consensus pattern (12 bp):
TTTTTTTTCAAT
Found at i:27247326 original size:26 final size:27
Alignment explanation
Indices: 27247271--27247343 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 27
27247261 CAAAATAATT
*
27247271 TTTTTTGAA-ATATTTTTTCAATTAAA
1 TTTTTTGAATATTTTTTTTCAATTAAA
**
27247297 TTTTTATCG-AT-TTTTTTTTCAATT-TC
1 TTTTT-T-GAATATTTTTTTTCAATTAAA
27247323 TTTTTTGAATATTTTTTTTCA
1 TTTTTTGAATATTTTTTTTCA
27247344 TAATGACTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
24 1 0.03
25 3 0.08
26 20 0.51
27 14 0.36
28 1 0.03
ACGTcount: A:0.23, C:0.07, G:0.04, T:0.66
Consensus pattern (27 bp):
TTTTTTGAATATTTTTTTTCAATTAAA
Found at i:27250324 original size:19 final size:20
Alignment explanation
Indices: 27250292--27250329 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
27250282 CAAGCTGACT
27250292 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
27250312 TTAGCTC-ATTTCAGCTCC
1 TTAGCTCAATTTCAGCTCC
27250330 AATCAGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:27250337 original size:20 final size:19
Alignment explanation
Indices: 27250294--27250339 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
27250284 AGCTGACTTT
* *
27250294 AGCTCAATTTCAGCTCCCTT
1 AGCTC-ATTTCAGCTCCATC
27250314 AGCTCATTTCAGCTCCAATC
1 AGCTCATTTCAGCTCC-ATC
27250334 AGCTCA
1 AGCTCA
27250340 CTTGAGCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.24, C:0.35, G:0.11, T:0.30
Consensus pattern (19 bp):
AGCTCATTTCAGCTCCATC
Found at i:27253027 original size:26 final size:26
Alignment explanation
Indices: 27252997--27253046 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
27252987 AGTTCAAATC
27252997 TCTTGGCATTCTTGAAACAAATAACT
1 TCTTGGCATTCTTGAAACAAATAACT
27253023 TCTTGGCATTCTTGAAACAAATAA
1 TCTTGGCATTCTTGAAACAAATAA
27253047 TTCCTTCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (26 bp):
TCTTGGCATTCTTGAAACAAATAACT
Found at i:27256257 original size:24 final size:23
Alignment explanation
Indices: 27256205--27256265 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
27256195 TATAATGTTT
27256205 TCCTTTAAATGATG--TAACAAC
1 TCCTTTAAATGATGTATAACAAC
* *
27256226 TCCATTAAATGATGTATAACACTC
1 TCCTTTAAATGATGTATAACA-AC
*
27256250 TCCTTTAATTGATGTA
1 TCCTTTAAATGATGTA
27256266 ACAGCCCCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 13 0.39
23 5 0.15
24 15 0.45
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (23 bp):
TCCTTTAAATGATGTATAACAAC
Found at i:27256396 original size:9 final size:9
Alignment explanation
Indices: 27256368--27256405 Score: 58
Period size: 9 Copynumber: 4.0 Consensus size: 9
27256358 ACATACAAAC
27256368 AAACACATT
1 AAACACATT
27256377 AAAAGCACATT
1 -AAA-CACATT
27256388 AAACACATT
1 AAACACATT
27256397 AAACACATT
1 AAACACATT
27256406 TTAACACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 15 0.56
10 6 0.22
11 6 0.22
ACGTcount: A:0.55, C:0.21, G:0.03, T:0.21
Consensus pattern (9 bp):
AAACACATT
Found at i:27256413 original size:10 final size:10
Alignment explanation
Indices: 27256368--27256414 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
27256358 ACATACAAAC
*
27256368 AAACACATTA
1 AAACACATTT
27256378 AAAGCACA-TT
1 AAA-CACATTT
27256388 AAACACA-TT
1 AAACACATTT
27256397 AAACACATTT
1 AAACACATTT
*
27256407 TAACACAT
1 AAACACAT
27256415 ATTATACTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
9 13 0.39
10 16 0.48
11 4 0.12
ACGTcount: A:0.53, C:0.21, G:0.02, T:0.23
Consensus pattern (10 bp):
AAACACATTT
Found at i:27256536 original size:19 final size:19
Alignment explanation
Indices: 27256509--27256601 Score: 86
Period size: 19 Copynumber: 5.1 Consensus size: 19
27256499 TTATTCCAAC
*
27256509 AACTAAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
27256528 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
* * * * *
27256547 AGC--AATTTATTCCAG--C
1 AACTTAATTAACT-AAGATG
27256563 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
*
27256582 AACTCAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
27256601 A
1 A
27256602 GTAATTTATT
Statistics
Matches: 57, Mismatches: 12, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
16 2 0.04
17 8 0.14
18 8 0.14
19 39 0.68
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.29
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:27256559 original size:54 final size:54
Alignment explanation
Indices: 27256499--27256624 Score: 207
Period size: 54 Copynumber: 2.3 Consensus size: 54
27256489 CAACAATAAA
* *
27256499 TTATTCCAACAACTAAATTAACTAAGATGAACTTAATTAACTAAGATGAGCAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGCAAT
* *
27256553 TTATTCCAGCAACTTAATTAACTAAGATGAACTCAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGCAAT
*
27256607 TTATTCTAGCAACTAAAT
1 TTATTCCAGCAACTAAAT
27256625 ACTTATTCCA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 66 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.32
Consensus pattern (54 bp):
TTATTCCAGCAACTAAATTAACTAAGATGAACTCAATTAACTAAGATGAGCAAT
Found at i:27267554 original size:174 final size:173
Alignment explanation
Indices: 27267354--27267705 Score: 605
Period size: 174 Copynumber: 2.0 Consensus size: 173
27267344 CCAACACAGG
27267354 TAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGT
1 TAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGT
* *
27267419 GCGCGGTTGATTATTAAGCACTATGTGTGCGAACCCAATATATATTTTCTATAAATTATTTACAT
66 GCGCGGTTGATTACTAAACACTATGTGTGC-AACCCAATATATATTTTCTATAAATTATTTACAT
* *
27267484 TAAGGGTGCGACTTTACCGAGTCGATTTTGGACAGCGGAAAAGA
130 GAAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGA
*
27267528 TAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGT
1 TAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGT
* * *
27267593 GCGTGGTTGATTACTAAACATTATGTGTGCAACCCAGTATATATTTTCTATAAATTATTTACATG
66 GCGCGGTTGATTACTAAACACTATGTGTGCAACCCAATATATATTTTCTATAAATTATTTACATG
* *
27267658 AAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGCAAAGG
131 AAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGA
27267701 TAAGT
1 TAAGT
27267706 ACCTTGAGTT
Statistics
Matches: 168, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 78 0.46
174 90 0.54
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (173 bp):
TAAGTGTGCGAACTTGAAATGCATGGCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGT
GCGCGGTTGATTACTAAACACTATGTGTGCAACCCAATATATATTTTCTATAAATTATTTACATG
AAGGGTGCGACTTTACCGAGTCAATTTTGGACAGCGGAAAAGA
Found at i:27270864 original size:12 final size:12
Alignment explanation
Indices: 27270836--27270875 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
27270826 ACTCGATTTC
*
27270836 TTTTCAAGCTCT
1 TTTTCAATCTCT
* *
27270848 CTTTCAATTTCT
1 TTTTCAATCTCT
27270860 TTTTCAATCTCT
1 TTTTCAATCTCT
27270872 TTTT
1 TTTT
27270876 GCTTTTCACT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.15, C:0.23, G:0.03, T:0.60
Consensus pattern (12 bp):
TTTTCAATCTCT
Found at i:27270987 original size:15 final size:15
Alignment explanation
Indices: 27270969--27270997 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27270959 TCACTCTCAT
27270969 TTTCTTTTTCTTTTA
1 TTTCTTTTTCTTTTA
27270984 TTTCTTTTTCTTTT
1 TTTCTTTTTCTTTT
27270998 TCTCTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTCTTTTTCTTTTA
Found at i:27270992 original size:21 final size:20
Alignment explanation
Indices: 27270946--27271015 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
27270936 TATCAAAGTC
*
27270946 TTTTTTCTTTTTCTCAC-TCT
1 TTTTTTCTTTTTCTCTCAT-T
** * *
27270966 CATTTTCTTTTTCTTTTATT
1 TTTTTTCTTTTTCTCTCATT
27270986 TCTTTTTCTTTTTCTCTCATT
1 T-TTTTTCTTTTTCTCTCATT
27271007 TTTTTTCTT
1 TTTTTTCTT
27271016 CTCTCAATTT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 21 0.54
21 18 0.46
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTCTTTTTCTCTCATT
Found at i:27271017 original size:17 final size:17
Alignment explanation
Indices: 27270988--27271021 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
27270978 CTTTTATTTC
27270988 TTTTTCTTTTTCTCTCA
1 TTTTTCTTTTTCTCTCA
27271005 TTTTT-TTTCTTCTCTCA
1 TTTTTCTTT-TTCTCTCA
27271022 ATTTCATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTCTTTTTCTCTCA
Done.