Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 88 of 211
Found at i:27271963 original size:11 final size:11
Alignment explanation
Indices: 27271947--27271997 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
27271937 ACAAATAATA
27271947 AATTTTTTTTG
1 AATTTTTTTTG
27271958 AA-TTTTTTT-
1 AATTTTTTTTG
27271967 -ATTTTTTTTG
1 AATTTTTTTTG
*
27271977 AATTTTTTTCG
1 AATTTTTTTTG
27271988 AATTTTTTTT
1 AATTTTTTTT
27271998 ACAATCTCGT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
8 1 0.03
9 7 0.20
10 7 0.20
11 20 0.57
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.75
Consensus pattern (11 bp):
AATTTTTTTTG
Found at i:27271970 original size:19 final size:19
Alignment explanation
Indices: 27271948--27271985 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
27271938 CAAATAATAA
27271948 ATTTTTTTTGAATTTTTTT
1 ATTTTTTTTGAATTTTTTT
27271967 ATTTTTTTTGAATTTTTTT
1 ATTTTTTTTGAATTTTTTT
27271986 CGAATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (19 bp):
ATTTTTTTTGAATTTTTTT
Found at i:27271993 original size:19 final size:19
Alignment explanation
Indices: 27271952--27271994 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
27271942 TAATAAATTT
***
27271952 TTTTTGAATTTTTTTATTT
1 TTTTTGAATTTTTTTAGAA
*
27271971 TTTTTGAATTTTTTTCGAA
1 TTTTTGAATTTTTTTAGAA
27271990 TTTTT
1 TTTTT
27271995 TTTACAATCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (19 bp):
TTTTTGAATTTTTTTAGAA
Found at i:27273198 original size:20 final size:20
Alignment explanation
Indices: 27273152--27273198 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
27273142 AGCTTGTTTC
*
27273152 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
27273172 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
27273192 CAGCTCA
1 CAGCTCA
27273199 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:27275878 original size:48 final size:47
Alignment explanation
Indices: 27275799--27275904 Score: 135
Period size: 48 Copynumber: 2.2 Consensus size: 47
27275789 GAGTGTCATG
*
27275799 GAAAAAGAAATTGAGATTGAAAAAGGATGTGA-AAAAGAGAAAGAAATC
1 GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAA-AGAAA-AAATC
* *
27275847 GAAAAAGAAATTGAGATTGAACAAAAG-TGTGAGGAAAAAGAGAAAATT
1 GAAAAAGAAATTGAGATTGAA-AAAAGATGTGA-GAAAAAGAAAAAATC
27275895 GAAAAAGAAA
1 GAAAAAGAAA
27275905 GAAAAGACAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.59, C:0.02, G:0.25, T:0.14
Consensus pattern (47 bp):
GAAAAAGAAATTGAGATTGAAAAAAGATGTGAGAAAAAGAAAAAATC
Found at i:27277621 original size:20 final size:20
Alignment explanation
Indices: 27277575--27277621 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
27277565 AGCTTGTTTC
*
27277575 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
27277595 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
27277615 CAGCTCA
1 CAGCTCA
27277622 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:27283535 original size:19 final size:19
Alignment explanation
Indices: 27283511--27283557 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
27283501 GTTTGATTCT
*
27283511 AGCTCGTT-GAGCTTAAATG
1 AGCTCGTTCCAGC-TAAATG
27283530 AGCTCGTTTCCAGCTAAATG
1 AGCTCG-TTCCAGCTAAATG
27283550 AGCTCGTT
1 AGCTCGTT
27283558 TGCTCATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 8 0.32
20 14 0.56
21 3 0.12
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (19 bp):
AGCTCGTTCCAGCTAAATG
Found at i:27286603 original size:24 final size:24
Alignment explanation
Indices: 27286569--27286650 Score: 84
Period size: 24 Copynumber: 3.5 Consensus size: 24
27286559 GCTGCCGAAT
* *
27286569 TTTAAAGGATGTATAATGTTTTCC
1 TTTAAATGATGTATAATGTTCTCC
27286593 TTTAAATGATG--TAATAG--CTCC
1 TTTAAATGATGTATAAT-GTTCTCC
27286614 TTTAAATGATGTATAAT-TCTCTCC
1 TTTAAATGATGTATAATGT-TCTCC
*
27286638 TTTAATTGATGTA
1 TTTAAATGATGTA
27286651 ACAGCCCCTT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
21 14 0.29
22 4 0.08
23 5 0.10
24 26 0.53
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.45
Consensus pattern (24 bp):
TTTAAATGATGTATAATGTTCTCC
Found at i:27286639 original size:45 final size:45
Alignment explanation
Indices: 27286569--27286660 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 45
27286559 GCTGCCGAAT
* * *
27286569 TTTAAAGGATGTATAATGTTTTCCTTTAAATGATGTAATAGCTCC
1 TTTAAAGGATGTATAATGTTCTCCTTTAAATGATGTAACAGCCCC
* *
27286614 TTTAAATGATGTATAAT-TCTCTCCTTTAATTGATGTAACAGCCCC
1 TTTAAAGGATGTATAATGT-TCTCCTTTAAATGATGTAACAGCCCC
27286659 TT
1 TT
27286661 GTATGTAACC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (45 bp):
TTTAAAGGATGTATAATGTTCTCCTTTAAATGATGTAACAGCCCC
Found at i:27286769 original size:11 final size:11
Alignment explanation
Indices: 27286753--27286784 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
27286743 ACCTACAAAC
27286753 AAACACATTAA
1 AAACACATTAA
27286764 AAACACATT--
1 AAACACATTAA
27286773 AAACACATTAA
1 AAACACATTAA
27286784 A
1 A
27286785 CGCATTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (11 bp):
AAACACATTAA
Found at i:27286965 original size:19 final size:19
Alignment explanation
Indices: 27286941--27287031 Score: 91
Period size: 19 Copynumber: 4.9 Consensus size: 19
27286931 ATTCCAACAT
27286941 CTTAATTAACTAAGATGAA
1 CTTAATTAACTAAGATGAA
27286960 CTTAATTAACTAAGATG-A
1 CTTAATTAACTAAGATGAA
* * * * *
27286978 -GTAATTTATTCCAG--CAA
1 CTTAATTAACT-AAGATGAA
27286995 CTTAATTAACTAAGATGAA
1 CTTAATTAACTAAGATGAA
*
27287014 CTCAATTAACTAAGATGA
1 CTTAATTAACTAAGATGA
27287032 GTAATTTATT
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
17 10 0.18
18 10 0.18
19 36 0.64
ACGTcount: A:0.44, C:0.13, G:0.11, T:0.32
Consensus pattern (19 bp):
CTTAATTAACTAAGATGAA
Found at i:27287049 original size:54 final size:54
Alignment explanation
Indices: 27286912--27287050 Score: 224
Period size: 54 Copynumber: 2.6 Consensus size: 54
27286902 ACAACTAAAC
* * * * *
27286912 TAACTAATATGGGTAATTTATTCCAACATCTTAATTAACTAAGATGAACTTAAT
1 TAACTAAGATGAGTAATTTATTCCAGCAACTTAATTAACTAAGATGAACTCAAT
27286966 TAACTAAGATGAGTAATTTATTCCAGCAACTTAATTAACTAAGATGAACTCAAT
1 TAACTAAGATGAGTAATTTATTCCAGCAACTTAATTAACTAAGATGAACTCAAT
*
27287020 TAACTAAGATGAGTAATTTATTCCTGCAACT
1 TAACTAAGATGAGTAATTTATTCCAGCAACT
27287051 AAATACTAAT
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 79 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.35
Consensus pattern (54 bp):
TAACTAAGATGAGTAATTTATTCCAGCAACTTAATTAACTAAGATGAACTCAAT
Found at i:27300455 original size:35 final size:35
Alignment explanation
Indices: 27300406--27300487 Score: 112
Period size: 35 Copynumber: 2.3 Consensus size: 35
27300396 ATTCACTTGA
*
27300406 TTAAGCATGCCATTATTCTAATT-TAGACTTGTATG
1 TTAAGCATGCCATTATTCTAATTCTA-ACTTGCATG
* * *
27300441 TTAAGCATGTCATTATTCTGATTCTAATTTGCATG
1 TTAAGCATGCCATTATTCTAATTCTAACTTGCATG
27300476 TTAAGCATGCCA
1 TTAAGCATGCCA
27300488 CTGTGTTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
35 39 0.95
36 2 0.05
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (35 bp):
TTAAGCATGCCATTATTCTAATTCTAACTTGCATG
Found at i:27308385 original size:66 final size:66
Alignment explanation
Indices: 27308278--27308410 Score: 203
Period size: 66 Copynumber: 2.0 Consensus size: 66
27308268 CAGTAAATGG
* *
27308278 AAATAGTGTTCCAATCTTTCAAATTACCATTGCGCTGGTATCAATCAATATCGTTAAATTCCACA
1 AAATAGTGTTCCAATATTTCAAATTACCATTGCGCTAGTATCAATCAATATCGTTAAATTCCACA
27308343 T
66 T
* * * * *
27308344 AAATAGTGTTCCAATATTTCAAATTACCATTGTGCTAGTATCCATGAATATCGTTCAATTTCACA
1 AAATAGTGTTCCAATATTTCAAATTACCATTGCGCTAGTATCAATCAATATCGTTAAATTCCACA
27308409 T
66 T
27308410 A
1 A
27308411 CTTTACGAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.36
Consensus pattern (66 bp):
AAATAGTGTTCCAATATTTCAAATTACCATTGCGCTAGTATCAATCAATATCGTTAAATTCCACA
T
Found at i:27309649 original size:21 final size:21
Alignment explanation
Indices: 27309623--27309662 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
27309613 AACATTACGA
27309623 TAATTAGGATAAAATCTTTTC
1 TAATTAGGATAAAATCTTTTC
*
27309644 TAATTAGGATACAATCTTT
1 TAATTAGGATAAAATCTTT
27309663 GATTCTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (21 bp):
TAATTAGGATAAAATCTTTTC
Found at i:27311994 original size:39 final size:39
Alignment explanation
Indices: 27311975--27312325 Score: 567
Period size: 39 Copynumber: 9.0 Consensus size: 39
27311965 ACATTACATG
* * *
27311975 TATAATCACATAACATTTAAGCATATACCACAATACACA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
* * * *
27312014 TATAATCACATAACGTTTAAGCATATACCACAATACACA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
*
27312053 TATAATCACATAACCTTCAAGCATATATCACAATACTCA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
*
27312092 TATAATCACATAACATTCAAGCATAAATCACAATACTCA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
* *
27312131 TATAATCACATATCATTCAAGCATATAACACAATACTCA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
* * *
27312170 TATAATCACATATCATTCAAGCATATAACACAATACTAA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
27312209 TATAATCACATAACATTCAAGCATATATCACAATACTCA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
27312248 TATAATCACATAACATTCAAGCATATATCACAATACTCA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
*
27312287 TATAATCACATAACAATCAAGCATATATCACAATACTCA
1 TATAATCACATAACATTCAAGCATATATCACAATACTCA
27312326 AAAACATGTT
Statistics
Matches: 297, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 297 1.00
ACGTcount: A:0.47, C:0.23, G:0.03, T:0.27
Consensus pattern (39 bp):
TATAATCACATAACATTCAAGCATATATCACAATACTCA
Found at i:27315821 original size:6 final size:6
Alignment explanation
Indices: 27315812--27315922 Score: 96
Period size: 6 Copynumber: 18.0 Consensus size: 6
27315802 TCAATCTCAA
* * * * **
27315812 TTTCTT TTTCAAT TTTCTTT TCTTCGT TTTCTT TTTCTC TTACTT TTTCGA
1 TTTCTT TTTC-TT TTTC-TT T-TTCTT TTTCTT TTTCTT TTTCTT TTTCTT
* ** **
27315863 TTTCTT TTTCTT TTGCAA TTTCTT TTTCTT TTTCAC TTTCTT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
27315911 TTTCTT TTTCTT
1 TTTCTT TTTCTT
27315923 CTTTTTCGTT
Statistics
Matches: 80, Mismatches: 23, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
6 68 0.85
7 9 0.11
8 3 0.04
ACGTcount: A:0.06, C:0.19, G:0.03, T:0.72
Consensus pattern (6 bp):
TTTCTT
Found at i:27318591 original size:20 final size:20
Alignment explanation
Indices: 27318568--27318613 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
27318558 ACAAGCTCAA
* *
27318568 TGAGCTAAATTGAGCTCGTG
1 TGAGCTAAATTGAACTCGAG
* *
27318588 TGAGCTGACTTGAACTCGAG
1 TGAGCTAAATTGAACTCGAG
27318608 TGAGCT
1 TGAGCT
27318614 GAACCGCATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (20 bp):
TGAGCTAAATTGAACTCGAG
Found at i:27318614 original size:20 final size:20
Alignment explanation
Indices: 27318577--27318615 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
27318567 ATGAGCTAAA
* *
27318577 TTGAGCTCGTGTGAGCTGAC
1 TTGAACTCGAGTGAGCTGAC
27318597 TTGAACTCGAGTGAGCTGA
1 TTGAACTCGAGTGAGCTGA
27318616 ACCGCATGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (20 bp):
TTGAACTCGAGTGAGCTGAC
Found at i:27324318 original size:39 final size:39
Alignment explanation
Indices: 27323874--27324320 Score: 621
Period size: 39 Copynumber: 11.5 Consensus size: 39
27323864 CAATTTTAAT
* * * *
27323874 CATATATCACATTACAT-GTATAAT-AGCATAAAATTTAAG
1 CATATATCACAATAC-TCATATAATCA-CATAACATTCAAG
** *
27323913 CATATATCACAATACAAATATAATCACATAATATTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
* * * *
27323952 CATATATCACTATGCTAATATAATCACATAACACTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
* * *
27323991 CATATATCATAATACTCATATAATCACATAACATTAAAA
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
*
27324030 CATATATCACAATACTCATATAATCACATAACCTTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
* *
27324069 CATATATTACAATACACATATAATCACATAACATTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
*
27324108 CATATATCACAATACCCATATAATCACATAACATTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
*
27324147 CATATATCACAATACTCATATAATCATATAACATTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
*
27324186 CATATATCACAATACTCATATAATCACATAACCTTCAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
* *
27324225 CATATATCACAATACTCATACAGTCACATAACATTCCAA-
1 CATATATCACAATACTCATATAATCACATAACATT-CAAG
* *
27324264 CATATATAACAATACTCATATAATCACATAACATTAAAG
1 CATATATCACAATACTCATATAATCACATAACATTCAAG
*
27324303 CATATATAACAATACTCA
1 CATATATCACAATACTCA
27324321 AAAATATGTT
Statistics
Matches: 367, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
38 2 0.01
39 361 0.98
40 4 0.01
ACGTcount: A:0.47, C:0.21, G:0.03, T:0.29
Consensus pattern (39 bp):
CATATATCACAATACTCATATAATCACATAACATTCAAG
Found at i:27326778 original size:27 final size:27
Alignment explanation
Indices: 27326740--27327244 Score: 582
Period size: 27 Copynumber: 18.7 Consensus size: 27
27326730 TAATGGGCCC
* *
27326740 AAAATTACCAAAATACCCTCGAAGAGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* *
27326767 AAAATTACCAAAATACCCACGAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
27326794 AAAATTACCGAAATACCCTCGAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* * * *
27326821 AAAATGACTGAAATACCTTCAAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* *
27326848 AAAATTACCGAAATACTCTCAAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* *
27326875 AAAATTACCAAAATACCCCCGAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
*
27326902 AAAATTATCGAAATACCCTCGAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* *
27326929 AAAATTATCGAAATACCCTCGAAAGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* * **
27326956 AAAATGACCGAAATACCCTCAAATAGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* *
27326983 -AAATTATCGAAATACCCTCGAAAGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
*
27327009 AAAATTATCGAAATACCC-CTGAAGGGT
1 AAAATTACCGAAATACCCTC-GAAGGGT
* * * *
27327036 AAAATGACTGAAATACCATCAAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* *
27327063 AAAATTACTGAAATACCCTCAAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* *
27327090 AAAATTATCGAAATACCCTCAAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* *
27327117 AAAATTATCAAAATACCCTCGAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
**
27327144 AAAATTACTAAAATACCCTCGAAGGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* * * *
27327171 AAAATTACCAAAATACCTTTGAAAGGT
1 AAAATTACCGAAATACCCTCGAAGGGT
* * *
27327198 AAAATGACTGAAATACCCCCGAAGGGGT
1 AAAATTACCGAAATACCCTCGAA-GGGT
* **
27327226 AAAATGACCGTTATACCCT
1 AAAATTACCGAAATACCCT
27327245 AGGAGATGAA
Statistics
Matches: 415, Mismatches: 59, Indels: 7
0.86 0.12 0.01
Matches are distributed among these distances:
26 22 0.05
27 374 0.90
28 19 0.05
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTCGAAGGGT
Found at i:27327597 original size:28 final size:28
Alignment explanation
Indices: 27327552--27327669 Score: 164
Period size: 28 Copynumber: 4.2 Consensus size: 28
27327542 ACTGCATTGT
27327552 ACTGATTACTGTATTGGGCTAAGGCCCAC
1 ACTG-TTACTGTATTGGGCTAAGGCCCAC
* *
27327581 ATTGTTACTGTATTGGGCTAAGGCTCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
*
27327609 ACTGTTACTGTATTGGGCTAAGGCTCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
* * * *
27327637 ACTGTTACTGAAATAGGCAAAGGCCCAC
1 ACTGTTACTGTATTGGGCTAAGGCCCAC
27327665 ACTGT
1 ACTGT
27327670 ATTGATAATG
Statistics
Matches: 81, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 78 0.96
29 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (28 bp):
ACTGTTACTGTATTGGGCTAAGGCCCAC
Found at i:27336976 original size:40 final size:40
Alignment explanation
Indices: 27336784--27336969 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
27336774 TCGAATGATG
* * * * *
27336784 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* **
27336824 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
27336864 TTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
27336904 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
27336945 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
27336970 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27336976 original size:80 final size:79
Alignment explanation
Indices: 27336837--27337002 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 79
27336827 AGACTAAGAT
* * **
27336837 CCGAAGGCATTTGTGCGAGTTACTAAATTCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
27336901 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
27336917 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
27336981 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
27336996 CCGAAGG
1 CCGAAGG
27337003 TACGTGATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
79 16 0.21
80 58 0.76
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:27342244 original size:47 final size:47
Alignment explanation
Indices: 27342080--27342387 Score: 458
Period size: 47 Copynumber: 6.6 Consensus size: 47
27342070 CCCTTTGGGA
* * * * * *
27342080 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27342127 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27342172 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27342219 CTTATCACATATATACACTTTCACATTCATCACATCGGGCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27342266 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27342315 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
27342362 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
27342388 CACAATTATC
Statistics
Matches: 237, Mismatches: 20, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
45 3 0.01
46 74 0.31
47 116 0.49
49 44 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27342324 original size:96 final size:96
Alignment explanation
Indices: 27342080--27342387 Score: 479
Period size: 96 Copynumber: 3.3 Consensus size: 96
27342070 CCCTTTGGGA
* * * *
27342080 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCC-TGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
27342142 ACTTTCACATTCATCACATCGGCCATTA-GC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
27342172 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
27342235 ACTTTCACATTCATCACATCGGGCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
27342266 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
27342331 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
27342362 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
27342388 CACAATTATC
Statistics
Matches: 196, Mismatches: 14, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
91 1 0.01
92 38 0.19
93 40 0.20
94 16 0.08
96 101 0.52
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27342353 original size:143 final size:139
Alignment explanation
Indices: 27342080--27342388 Score: 456
Period size: 143 Copynumber: 2.2 Consensus size: 139
27342070 CCCTTTGGGA
* * * * *
27342080 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCTGTCACATATATACACT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCTATCACATATATACACT
27342145 TTCACATTCATCACATCGGCCATTAGCCTCATCACATATATACACTTTCACATTCATCACATCGG
66 TTCACATTCATCACATCGGCCATTAGCCTCATCACATATATACACTTTCACATTCATCACATCGG
*
27342210 CTATTAGGC
131 CCATTAGGC
* * *
27342219 CTTATCACATATATACACTTTCACATTCATCACATCGGGCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCC-TATCAC--ATATATAC
* * *
27342284 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
63 ACTTTCACATTCATCACATCGGCCATT-AGCCTCATCACATATATACACTTTCACATTCATCACA
27342349 TCGGCCATTAGGC
127 TCGGCCATTAGGC
* *
27342362 CTTATCACATATATATACATTCACATC
1 CTTATCACATATATACACTTTCACATC
27342389 ACAATTATCC
Statistics
Matches: 151, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
139 41 0.27
140 5 0.03
142 34 0.23
143 71 0.47
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (139 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGCCTCATCACATATATACACTTTCACATTCATCACATCGG
CCATTAGGC
Found at i:27348320 original size:40 final size:40
Alignment explanation
Indices: 27348223--27348408 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
27348213 TCGAATGATG
* * * *
27348223 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
27348263 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
27348303 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
27348343 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
27348384 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
27348409 AACGAGTAGC
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 118 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27348415 original size:40 final size:40
Alignment explanation
Indices: 27348276--27348441 Score: 205
Period size: 40 Copynumber: 4.2 Consensus size: 40
27348266 GGACTAAGAT
*
27348276 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTC
27348316 CCGAAGGCATTTGTGA-GAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGT-ACGAGTTACTAAATCCGGGTTAAGTC
* * *
27348356 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTACGAGTTACTA-AATCCGGGTTAAGTC
* * * *
27348396 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATT
1 CCGAAGGCATTTGTACGAGTTA-CTAAATCCGGGTTAAGTC
27348435 CCGAAGG
1 CCGAAGG
27348442 TACGTGATTT
Statistics
Matches: 110, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
39 15 0.14
40 93 0.85
41 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTACGAGTTACTAAATCCGGGTTAAGTC
Found at i:27356584 original size:23 final size:24
Alignment explanation
Indices: 27356553--27356597 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
27356543 CAAAATTTCC
27356553 CTAATAATTAATCCCAAATAAATA
1 CTAATAATTAATCCCAAATAAATA
*
27356577 CTAA-AATTAATCCCTAATAAA
1 CTAATAATTAATCCCAAATAAA
27356598 AAAATTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (24 bp):
CTAATAATTAATCCCAAATAAATA
Found at i:27365128 original size:33 final size:34
Alignment explanation
Indices: 27365077--27365151 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
27365067 AGATTTAAAC
27365077 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
27365111 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
27365144 AATTTAAT
1 AAATTAAT
27365152 AAACTAACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:27366943 original size:18 final size:17
Alignment explanation
Indices: 27366920--27366958 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
27366910 CTCTTTTTGC
27366920 TCTTTTTCATTCTCTTTT
1 TCTTTTTCATT-TCTTTT
*
27366938 TCTTTTTTGATTTCTTTT
1 TC-TTTTTCATTTCTTTT
27366956 TCT
1 TCT
27366959 GTCTTCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
17 1 0.05
18 10 0.53
19 8 0.42
ACGTcount: A:0.05, C:0.18, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTTCATTTCTTTT
Found at i:27372268 original size:6 final size:6
Alignment explanation
Indices: 27372259--27372321 Score: 58
Period size: 6 Copynumber: 10.8 Consensus size: 6
27372249 GAAAGAGAAC
* ** * *
27372259 TAAAAA TAAAAA TAAACA TAAGCA T-AAAA TGAAAA T-AAAG TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
*
27372305 TAAAAA TAAAAC TAAAA
1 TAAAAA TAAAAA TAAAA
27372322 TGAAAACAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
5 7 0.15
6 41 0.85
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:27372304 original size:34 final size:33
Alignment explanation
Indices: 27372262--27372335 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 33
27372252 AGAGAACTAA
* * *
27372262 AAATAAAAATAAACAT-AAGCATAAAATGAAAAT
1 AAATAAAAATAAAAATAAAAC-TAAAATGAAAAC
27372295 AAAGTAAAAATAAAAATAAAACTAAAATGAAAAC
1 AAA-TAAAAATAAAAATAAAACTAAAATGAAAAC
27372329 AAATAAA
1 AAATAAA
27372336 CGCAATGGTC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
33 7 0.19
34 26 0.72
35 3 0.08
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.16
Consensus pattern (33 bp):
AAATAAAAATAAAAATAAAACTAAAATGAAAAC
Found at i:27373981 original size:13 final size:13
Alignment explanation
Indices: 27373965--27373993 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
27373955 TAAATATCAT
27373965 AAATAAAATAAAA
1 AAATAAAATAAAA
27373978 AAATAAAATAAAA
1 AAATAAAATAAAA
27373991 AAA
1 AAA
27373994 CATATGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (13 bp):
AAATAAAATAAAA
Found at i:27373988 original size:22 final size:22
Alignment explanation
Indices: 27373934--27373993 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
27373924 AAGACCAAAG
* **
27373934 AATAAAATACAATACAATAACTA
1 AATAAAATA-AATAAAATAAAAA
**
27373957 AATATCATAAATAAAATAAAAA
1 AATAAAATAAATAAAATAAAAA
27373979 AATAAAATAAA-AAAA
1 AATAAAATAAATAAAA
27373994 CATATGAATA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
21 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (22 bp):
AATAAAATAAATAAAATAAAAA
Found at i:27374132 original size:39 final size:39
Alignment explanation
Indices: 27374077--27374155 Score: 106
Period size: 39 Copynumber: 2.0 Consensus size: 39
27374067 GGGAAAGACC
* * *
27374077 GATAGTGGTACGGTGGTGGGCGTGCA-GGTGATCGACGGG
1 GATAGTAGTACAGTGGTGGACGTG-AGGGTGATCGACGGG
*
27374116 GATAGTAGTACAGTGGTGGATGTGAGGGTGATCGACGGG
1 GATAGTAGTACAGTGGTGGACGTGAGGGTGATCGACGGG
27374155 G
1 G
27374156 GAAGAACGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 34 0.97
ACGTcount: A:0.19, C:0.10, G:0.49, T:0.22
Consensus pattern (39 bp):
GATAGTAGTACAGTGGTGGACGTGAGGGTGATCGACGGG
Found at i:27377824 original size:19 final size:18
Alignment explanation
Indices: 27377800--27377846 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
27377790 GAAGAAAAAT
27377800 TAAAAAGTAAAAATTA-AA
1 TAAAAA-TAAAAATTATAA
*
27377818 CTAAAAACAAAAATTATAA
1 -TAAAAATAAAAATTATAA
27377837 TAAAAATAAA
1 TAAAAATAAA
27377847 TTGTTCCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 17 0.68
19 8 0.32
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (18 bp):
TAAAAATAAAAATTATAA
Found at i:27378545 original size:28 final size:27
Alignment explanation
Indices: 27378462--27378549 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 27
27378452 AATTAAGCAC
27378462 ATTAAACATGAATTAATATCCCAGAAAT
1 ATTAAACATGAATTAATAT-CCAGAAAT
* * * * *
27378490 ATTAAAACAAGAAATAACA--CATACAT
1 ATT-AAACATGAATTAATATCCAGAAAT
27378516 ATTAAACATGAATTAATATCCAGAAAAT
1 ATTAAACATGAATTAATATCCAG-AAAT
27378544 ATTAAA
1 ATTAAA
27378550 ACAAGAAATA
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
25 12 0.26
26 8 0.17
27 2 0.04
28 12 0.26
29 12 0.26
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.26
Consensus pattern (27 bp):
ATTAAACATGAATTAATATCCAGAAAT
Found at i:27381946 original size:47 final size:47
Alignment explanation
Indices: 27381883--27382212 Score: 588
Period size: 47 Copynumber: 7.0 Consensus size: 47
27381873 ATGATAGTAT
27381883 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27381930 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27381977 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27382024 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27382071 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
27382118 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * *
27382165 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27382212 G
1 G
27382213 TCCCGAAGGG
Statistics
Matches: 273, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 273 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:27382387 original size:37 final size:37
Alignment explanation
Indices: 27382331--27382409 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27382321 CCGAGCTCTA
* * *
27382331 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27382368 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27382405 AAGAC
1 AAGAC
27382410 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27383705 original size:40 final size:40
Alignment explanation
Indices: 27383624--27383968 Score: 545
Period size: 40 Copynumber: 8.7 Consensus size: 40
27383614 GAGAATTGAG
27383624 AGTGATATATCCGGGCTAAGTCCCGAAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCG-AGGAGCATTCGTGCT
27383665 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
27383705 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
27383744 AGTG--ATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
27383782 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
27383822 AGTGATATATCCGGGCTAAGTCCCGAAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCG-AGGAGCATTCGTGCT
* * *
27383863 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
27383903 AGTAATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCC-CGAGGAGCATTCGTGCT
* * *
27383943 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
27383969 AGAGTAATCA
Statistics
Matches: 284, Mismatches: 14, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
37 15 0.05
38 22 0.08
39 23 0.08
40 159 0.56
41 65 0.23
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:27383881 original size:81 final size:80
Alignment explanation
Indices: 27383624--27383968 Score: 545
Period size: 81 Copynumber: 4.3 Consensus size: 80
27383614 GAGAATTGAG
27383624 AGTGATATATCCGGGCTAAGTCCCGAAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
1 AGTGATATATCCGGGCTAAGTCCCG-AGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
27383689 GAGGAGCATTCGTGCT
65 GAGGAGCATTCGTGCT
27383705 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCTAGTG--ATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
27383767 AGGAGCATTCGTGCT
66 AGGAGCATTCGTGCT
27383782 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
27383847 AAGGAGCATTCGTGCT
66 -AGGAGCATTCGTGCT
* * * * * *
27383863 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATATATCCGTGCTAA-ACCTC
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCC-C
*
27383927 GAAGAGCATTCGTGCT
65 GAGGAGCATTCGTGCT
* * *
27383943 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
27383969 AGAGTAATCA
Statistics
Matches: 247, Mismatches: 12, Indels: 11
0.91 0.04 0.04
Matches are distributed among these distances:
77 55 0.22
78 22 0.09
79 19 0.08
80 59 0.24
81 92 0.37
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCG
AGGAGCATTCGTGCT
Found at i:27387439 original size:47 final size:47
Alignment explanation
Indices: 27387376--27387658 Score: 458
Period size: 47 Copynumber: 6.0 Consensus size: 47
27387366 ATGATAGTAT
*
27387376 GGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
27387423 GGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27387470 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
27387517 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATCTATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
27387564 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * * *
27387611 GGTCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
27387658 G
1 G
27387659 TCCCGAAGGG
Statistics
Matches: 220, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 220 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:27387536 original size:22 final size:22
Alignment explanation
Indices: 27387508--27387583 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
27387498 AAGTGTATAT
27387508 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ** *
27387530 ATGTGATGAATGTGAAAGTGTATCT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
27387555 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
27387577 ATGTGAT
1 ATGTGAT
27387584 GAATGTGAAA
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.12, G:0.30, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:27387833 original size:37 final size:37
Alignment explanation
Indices: 27387777--27387855 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27387767 TCGAGCTCTA
* * *
27387777 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27387814 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27387851 AAGAC
1 AAGAC
27387856 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27401456 original size:15 final size:16
Alignment explanation
Indices: 27401431--27401461 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
27401421 TGAGAGCAAA
27401431 ATAGCAAAAAGAAAAG
1 ATAGCAAAAAGAAAAG
27401447 ATAG-AAAAAGAAAAG
1 ATAGCAAAAAGAAAAG
27401462 GAAAAGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.71, C:0.03, G:0.19, T:0.06
Consensus pattern (16 bp):
ATAGCAAAAAGAAAAG
Found at i:27404715 original size:10 final size:10
Alignment explanation
Indices: 27404700--27404737 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
27404690 TTGGGTTAAG
27404700 ATTGAGCTGA
1 ATTGAGCTGA
27404710 ATTGAGCTTGA
1 ATTGAGC-TGA
27404721 A-TGAGCTGA
1 ATTGAGCTGA
*
27404730 CTTGAGCT
1 ATTGAGCT
27404738 CGAGCGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 3 0.12
10 18 0.72
11 4 0.16
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:27404746 original size:20 final size:20
Alignment explanation
Indices: 27404703--27404750 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
27404693 GGTTAAGATT
* *
27404703 GAGCTGAATTGAGCTTGAAT
1 GAGCTGAATTGAGCTCGAAC
* *
27404723 GAGCTGACTTGAGCTCGAGC
1 GAGCTGAATTGAGCTCGAAC
27404743 GAGCTGAA
1 GAGCTGAA
27404751 CTAAGTTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (20 bp):
GAGCTGAATTGAGCTCGAAC
Found at i:27411806 original size:26 final size:25
Alignment explanation
Indices: 27411761--27411828 Score: 100
Period size: 26 Copynumber: 2.7 Consensus size: 25
27411751 CCATATCAAA
* *
27411761 AAGCTCTAGAGAGCCATTAATCAGG
1 AAGCTCCAAAGAGCCATTAATCAGG
*
27411786 AAGCTCACAAAGAGCCTTTAATCAGG
1 AAGCTC-CAAAGAGCCATTAATCAGG
27411812 AAGCTCCAAAGAGCCAT
1 AAGCTCCAAAGAGCCAT
27411829 ATAACGAGAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 16 0.42
26 22 0.58
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.18
Consensus pattern (25 bp):
AAGCTCCAAAGAGCCATTAATCAGG
Found at i:27411921 original size:24 final size:25
Alignment explanation
Indices: 27411894--27411960 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 25
27411884 CCAATCGGAT
*
27411894 GCTCTGAAGAGCTAT-TAACGGGAA
1 GCTCTGAAGAGCCATATAACGGGAA
*
27411918 GCTC-GCAAGAACCATATAACGGGAA
1 GCTCTG-AAGAGCCATATAACGGGAA
27411943 GCT-TGAGAGAGCCATATA
1 GCTCTGA-AGAGCCATATA
27411961 TCAGGATGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
23 1 0.03
24 12 0.33
25 23 0.64
ACGTcount: A:0.36, C:0.19, G:0.27, T:0.18
Consensus pattern (25 bp):
GCTCTGAAGAGCCATATAACGGGAA
Found at i:27412900 original size:25 final size:26
Alignment explanation
Indices: 27412853--27412901 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
27412843 AAAGATGATA
* *
27412853 TAAAATGATGATATTACTTATTTAAT
1 TAAAATGATCATATTACTAATTTAAT
*
27412879 TAAAAT-ATCATATTTCTAATTTA
1 TAAAATGATCATATTACTAATTTA
27412902 GTCTTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (26 bp):
TAAAATGATCATATTACTAATTTAAT
Found at i:27419590 original size:20 final size:19
Alignment explanation
Indices: 27419547--27419593 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
27419537 CATACTAGAA
27419547 TTCATTTCAATATTCACAT
1 TTCATTTCAATATTCACAT
* * *
27419566 CTCATTTCATTAATTCATAT
1 TTCATTTCAAT-ATTCACAT
27419586 TTCATTTC
1 TTCATTTC
27419594 CCATCCCATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.51
Consensus pattern (19 bp):
TTCATTTCAATATTCACAT
Found at i:27419766 original size:22 final size:24
Alignment explanation
Indices: 27419724--27419767 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
27419714 AGTTTGGCAC
*
27419724 CTATATAAATTGGTACGCCCAGCA
1 CTATATAAATTGGTACACCCAGCA
27419748 CTATATAAATT-G-ACACCCAG
1 CTATATAAATTGGTACACCCAG
27419768 TGTCACATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 1 0.05
24 11 0.58
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (24 bp):
CTATATAAATTGGTACACCCAGCA
Found at i:27422013 original size:44 final size:44
Alignment explanation
Indices: 27421888--27422095 Score: 154
Period size: 44 Copynumber: 4.7 Consensus size: 44
27421878 GGGAGACAAT
* *
27421888 ATCTACTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAG
1 ATCTACTATCTTCAACCTGCTCCACTGCAACCGAGGAAGGCAAG
* ** * * * * * *
27421932 -GCTTGTGTCTTCGATCTGCTTCACCGTCGACAC-AGGAAGGCAAG
1 ATCTACTATCTTCAACCTGCTCCACTG-CAAC-CGAGGAAGGCAAG
*
27421976 ATCTACTATCTTCAACCTACTCCACTGCAACCGAGGAAGGCAAG
1 ATCTACTATCTTCAACCTGCTCCACTGCAACCGAGGAAGGCAAG
* ** * * * * *
27422020 -GCTGGTATCTTCGATCTGCTTCGCTGTC-ATCGCAGGAAGGCAAG
1 ATCTACTATCTTCAACCTGCTCCACTG-CAACCG-AGGAAGGCAAG
* *
27422064 ATCTGCTATCTTTAACCTGCTCCACTGCAACC
1 ATCTACTATCTTCAACCTGCTCCACTGCAACC
27422096 AAGGGAGGTA
Statistics
Matches: 118, Mismatches: 38, Indels: 15
0.69 0.22 0.09
Matches are distributed among these distances:
43 39 0.33
44 40 0.34
45 39 0.33
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.25
Consensus pattern (44 bp):
ATCTACTATCTTCAACCTGCTCCACTGCAACCGAGGAAGGCAAG
Found at i:27422037 original size:88 final size:88
Alignment explanation
Indices: 27421888--27422608 Score: 1020
Period size: 88 Copynumber: 8.2 Consensus size: 88
27421878 GGGAGACAAT
*
27421888 ATCTACTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTT
1 ATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTT
* * **
27421953 CACCGTCGACACAGGAAGGCAAG
66 CGCTGTCGATGCAGGAAGGCAAG
* * * * * *
27421976 ATCTACTATCTTCAACCTACTCCACTGCAACCGAGGAAGGCAAGGCTGGTATCTTCGATCTGCTT
1 ATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTT
27422041 CGCTGTC-ATCGCAGGAAGGCAAG
66 CGCTGTCGAT-GCAGGAAGGCAAG
* * * * *
27422064 ATCTGCTATCTTTAACCTGCTCCACTGCAACCAAGGGAGGTAAGGCTGGTGTCTTCGATCTGC-T
1 ATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTT
27422128 CTGCTGTCGATGCAGGAAGGCAAG
66 C-GCTGTCGATGCAGGAAGGCAAG
* * *
27422152 AT-TCGTTATCTTCAACCTGCTTCACTACAACCGAGGGGGGCAAGGCTTGTGTCTTCGATCTGCT
1 ATCT-GCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCT
* *
27422216 TTGCTATCGATGCAGGAAGGCAAG
65 TCGCTGTCGATGCAGGAAGGCAAG
* * * * *
27422240 ATCCGCTATCTTCAACCTACTCTACTACTACAACCGAGAGAAGCAAGGCTTGTGTCTTTGATCTG
1 ATCTGCTATCTTCAACCTGCTC--C-ACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTG
* *
27422305 CTTTGCTTTCGATGCAGGAAGGCAAG
63 CTTCGCTGTCGATGCAGGAAGGCAAG
27422331 ATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTT
1 ATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTT
*
27422396 TGCTGTCGATGCAGGAAGGCAAG
66 CGCTGTCGATGCAGGAAGGCAAG
*
27422419 ATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTCGTGTCTTCGATCTGCTT
1 ATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGC-T
27422484 TC-CTGTCGATGCAGGAAGGCAAG
65 TCGCTGTCGATGCAGGAAGGCAAG
* * * *
27422507 ATCCT-CTATCTTCAACCTACTCTACTACAACCGAGAGAGGCAAGGCTTGTGTCTTCGATCTACT
1 AT-CTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCT
*
27422571 TTGCTGTCGATGCAGGAAGGCAAG
65 TCGCTGTCGATGCAGGAAGGCAAG
27422595 ATCTGCTATCTTCA
1 ATCTGCTATCTTCA
27422609 CTGATCTGTT
Statistics
Matches: 571, Mismatches: 49, Indels: 26
0.88 0.08 0.04
Matches are distributed among these distances:
87 8 0.01
88 474 0.83
89 8 0.01
90 1 0.00
91 80 0.14
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (88 bp):
ATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTT
CGCTGTCGATGCAGGAAGGCAAG
Found at i:27422562 original size:355 final size:352
Alignment explanation
Indices: 27421893--27422608 Score: 1078
Period size: 355 Copynumber: 2.0 Consensus size: 352
27421883 ACAATATCTA
* * *
27421893 CTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAGGCTTGTGTCTTCGATCTGCTTCACCG
1 CTATCTTCAACCTACTCCACTACAACCGAGAGAAGCAAGGCTTGTGTCTTCGATCTGCTTCACCG
*
27421958 TCGACACAGGAAGGCAAGATCTACTATCTTCAACCTACTCCACTGCAACCGAGGAAGGCAAGGCT
66 TCGACACAGGAAGGCAAGATCTACTATCTTCAACCTACTCCACTACAACCGAGGAAGGCAAGGCT
*
27422023 GGTATCTTCGATCTGCTTCGCTGTCATCGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCA
131 GGTATCTTCGATCTGCTTCGCTGTCATCGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCA
* * * *
27422088 CTGCAACCAAGGGAGGTAAGGCTGGTGTCTTCGATCTGCTCTGCTGTCGATGCAGGAAGGCAAGA
196 CTACAACCAAGGGAGGCAAGGCTCGTGTCTTCGATCTGCTCTCCTGTCGATGCAGGAAGGCAAGA
* * * * *
27422153 TTCGTTATCTTCAACCTGCTTCACTACAACCGAGGGGGGCAAGGCTTGTGTCTTCGATCTGCTTT
261 TTCCTTATCTTCAACCTACTTCACTACAACCGAGAGAGGCAAGGCTTGTGTCTTCGATCTACTTT
27422218 GCTATCGATGCAGGAAGGCAAGATCCG
326 GCTATCGATGCAGGAAGGCAAGATCCG
* **
27422245 CTATCTTCAACCTACTCTACTACTACAACCGAGAGAAGCAAGGCTTGTGTCTTTGATCTGCTTTG
1 CTATCTTCAACCTACTC--C-ACTACAACCGAGAGAAGCAAGGCTTGTGTCTTCGATCTGCTTCA
** ** * * *
27422310 CTTTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCGAGGGAGGCAAG
63 CCGTCGACACAGGAAGGCAAGATCTACTATCTTCAACCTACTCCACTACAACCGAGGAAGGCAAG
* * *
27422375 GCTTGTGTCTTCGATCTGCTTTGCTGTCGAT-GCAGGAAGGCAAGATCTGCTATCTTCAACCTGC
128 GCTGGTATCTTCGATCTGCTTCGCTGTC-ATCGCAGGAAGGCAAGATCTGCTATCTTCAACCTGC
* *
27422439 TCCACTACAACCGAGGGAGGCAAGGCTCGTGTCTTCGATCTGCTTTCCTGTCGATGCAGGAAGGC
192 TCCACTACAACCAAGGGAGGCAAGGCTCGTGTCTTCGATCTGCTCTCCTGTCGATGCAGGAAGGC
27422504 AAGA-TCCTCTATCTTCAACCTAC-TCTACTACAACCGAGAGAGGCAAGGCTTGTGTCTTCGATC
257 AAGATTCCT-TATCTTCAACCTACTTC-ACTACAACCGAGAGAGGCAAGGCTTGTGTCTTCGATC
* *
27422567 TACTTTGCTGTCGATGCAGGAAGGCAAGATCTG
320 TACTTTGCTATCGATGCAGGAAGGCAAGATCCG
27422600 CTATCTTCA
1 CTATCTTCA
27422609 CTGATCTGTT
Statistics
Matches: 327, Mismatches: 31, Indels: 9
0.89 0.08 0.02
Matches are distributed among these distances:
352 16 0.05
354 6 0.02
355 303 0.93
356 2 0.01
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (352 bp):
CTATCTTCAACCTACTCCACTACAACCGAGAGAAGCAAGGCTTGTGTCTTCGATCTGCTTCACCG
TCGACACAGGAAGGCAAGATCTACTATCTTCAACCTACTCCACTACAACCGAGGAAGGCAAGGCT
GGTATCTTCGATCTGCTTCGCTGTCATCGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCA
CTACAACCAAGGGAGGCAAGGCTCGTGTCTTCGATCTGCTCTCCTGTCGATGCAGGAAGGCAAGA
TTCCTTATCTTCAACCTACTTCACTACAACCGAGAGAGGCAAGGCTTGTGTCTTCGATCTACTTT
GCTATCGATGCAGGAAGGCAAGATCCG
Found at i:27422592 original size:44 final size:44
Alignment explanation
Indices: 27422105--27422594 Score: 137
Period size: 44 Copynumber: 11.1 Consensus size: 44
27422095 CAAGGGAGGT
* * *
27422105 AAGGCTGGTGTCTTCGATCTGCTCTGCTGTCGATGCAGGAAGGC
1 AAGGCTTGTGTCTTCGATCTGCTTTACTGTCGATGCAGGAAGGC
* * * * * * ** **
27422149 AA-GATTCGTTATCTTCAACCTGCTTCACT-AC-AACCGAGGGGGGC
1 AAGGCTT-G-TGTCTTCGATCTGCTTTACTGTCGATGC-AGGAAGGC
* *
27422193 AAGGCTTGTGTCTTCGATCTGCTTTGCTATCGATGCAGGAAGGC
1 AAGGCTTGTGTCTTCGATCTGCTTTACTGTCGATGCAGGAAGGC
* * * * * * * * **
27422237 AA-GATCCGCTATCTTCAACCTACTCTACTACTAC-AACCGAGAGAA-GC
1 AAGGCT-TG-TGTCTTCGATCTGCTTTACT-GT-CGATGC-AG-GAAGGC
* * *
27422284 AAGGCTTGTGTCTTTGATCTGCTTTGCTTTCGATGCAGGAAGGC
1 AAGGCTTGTGTCTTCGATCTGCTTTACTGTCGATGCAGGAAGGC
* * * * ** * ** *
27422328 AA-GATCTGCTATCTTCAACCTGCTCCACT-AC-AACCGAGGGAGGC
1 AAGGCT-TG-TGTCTTCGATCTGCTTTACTGTCGATGC-AGGAAGGC
*
27422372 AAGGCTTGTGTCTTCGATCTGCTTTGCTGTCGATGCAGGAAGGC
1 AAGGCTTGTGTCTTCGATCTGCTTTACTGTCGATGCAGGAAGGC
* * * * ** * ** *
27422416 AA-GATCTGCTATCTTCAACCTGCTCCACT-AC-AACCGAGGGAGGC
1 AAGGCT-TG-TGTCTTCGATCTGCTTTACTGTCGATGC-AGGAAGGC
* *
27422460 AAGGCTCGTGTCTTCGATCTGCTTTCCTGTCGATGCAGGAAGGC
1 AAGGCTTGTGTCTTCGATCTGCTTTACTGTCGATGCAGGAAGGC
* * * * * * * * * * *
27422504 AAGATCCTCTATCTTCAACCTACTCTACT-AC-A-ACCGAGAGAGGC
1 AAG-GCTTGTGTCTTCGATCTGCTTTACTGTCGATGCAG-GA-AGGC
* *
27422548 AAGGCTTGTGTCTTCGATCTACTTTGCTGTCGATGCAGGAAGGC
1 AAGGCTTGTGTCTTCGATCTGCTTTACTGTCGATGCAGGAAGGC
27422592 AAG
1 AAG
27422595 ATCTGCTATC
Statistics
Matches: 296, Mismatches: 117, Indels: 66
0.62 0.24 0.14
Matches are distributed among these distances:
42 2 0.01
43 80 0.27
44 94 0.32
45 89 0.30
46 18 0.06
47 8 0.03
48 5 0.02
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.27
Consensus pattern (44 bp):
AAGGCTTGTGTCTTCGATCTGCTTTACTGTCGATGCAGGAAGGC
Found at i:27423864 original size:22 final size:23
Alignment explanation
Indices: 27423839--27423891 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 23
27423829 TTGGCCTCTC
27423839 CATTTTTACTTTTTTTATT-TTT
1 CATTTTTACTTTTTTTATTCTTT
*
27423861 CATTTTT-CATTTTTTATTCTTT
1 CATTTTTACTTTTTTTATTCTTT
*
27423883 -TTTTTTACT
1 CATTTTTACT
27423892 CAAAGTGCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.75
Consensus pattern (23 bp):
CATTTTTACTTTTTTTATTCTTT
Found at i:27424918 original size:7 final size:7
Alignment explanation
Indices: 27424898--27424944 Score: 58
Period size: 7 Copynumber: 6.6 Consensus size: 7
27424888 TTGGCCTCTC
27424898 CATTTTT
1 CATTTTT
*
27424905 ACTTTTTT
1 -CATTTTT
*
27424913 TATTTTT
1 CATTTTT
27424920 CATTTTT
1 CATTTTT
27424927 CATTTTT
1 CATTTTT
*
27424934 TATTTTT
1 CATTTTT
27424941 CATT
1 CATT
27424945 CTTTTTTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
7 27 0.82
8 6 0.18
ACGTcount: A:0.15, C:0.11, G:0.00, T:0.74
Consensus pattern (7 bp):
CATTTTT
Found at i:27424925 original size:14 final size:14
Alignment explanation
Indices: 27424908--27424953 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
27424898 CATTTTTACT
* *
27424908 TTTTTTATTTTTCA
1 TTTTTCATTTTTTA
27424922 TTTTTCATTTTTTA
1 TTTTTCATTTTTTA
27424936 TTTTTCATTCTTTT-
1 TTTTTCATT-TTTTA
27424950 TTTT
1 TTTT
27424954 GACTCAAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 25 0.86
15 4 0.14
ACGTcount: A:0.11, C:0.09, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTCATTTTTTA
Found at i:27424953 original size:21 final size:21
Alignment explanation
Indices: 27424898--27424953 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
27424888 TTGGCCTCTC
27424898 CATTTTTACTTTTTTTATTTTT
1 CATTTTT-CTTTTTTTATTTTT
*
27424920 CATTTTTCATTTTTTATTTTT
1 CATTTTTCTTTTTTTATTTTT
*
27424941 CATTCTT-TTTTTT
1 CATTTTTCTTTTTT
27424954 GACTCAAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 5 0.16
21 19 0.61
22 7 0.23
ACGTcount: A:0.12, C:0.11, G:0.00, T:0.77
Consensus pattern (21 bp):
CATTTTTCTTTTTTTATTTTT
Found at i:27425991 original size:14 final size:14
Alignment explanation
Indices: 27425974--27426012 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
27425964 CATTTTTACT
27425974 TTTTTTATTTTTCA
1 TTTTTTATTTTTCA
27425988 TTTTTTATTTTTCA
1 TTTTTTATTTTTCA
*
27426002 -TTCTTATTTTT
1 TTTTTTATTTTT
27426013 TTGACTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.13, C:0.08, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTTATTTTTCA
Found at i:27426008 original size:13 final size:14
Alignment explanation
Indices: 27425978--27426012 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
27425968 TTTACTTTTT
*
27425978 TTATTTTTCATTTT
1 TTATTTTTCATTTC
27425992 TTATTTTTCA-TTC
1 TTATTTTTCATTTC
27426005 TTATTTTT
1 TTATTTTT
27426013 TTGACTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (14 bp):
TTATTTTTCATTTC
Found at i:27444284 original size:51 final size:51
Alignment explanation
Indices: 27444229--27444624 Score: 358
Period size: 51 Copynumber: 7.8 Consensus size: 51
27444219 AAAGTGATGG
* * * * * *
27444229 TCACGTATGTAGTACTATGTGTAGGCTACTATGCGTACCGAATAGCTTTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAAACTTTGA
* * * * *
27444280 TCACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAA-TAATGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAAACT-TTGA
* * * *
27444331 TCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACC-AAGAAGCTTTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAA-AAACTTTGA
* * * * ** * *
27444382 GCACGTGTGTAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACTATGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAAACTTTGA
* * * * * * * * *
27444433 TTACATGTGTAGTACTAAGTGAAGACTACAATGGGTA-CAAAAAAGCTTTGG
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAAA-CTTTGA
*
27444484 TCACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCC-ATAAAAC-TTGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGA-AAAACTTTGA
* * *
27444534 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGTAAAAC--TGA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAAACTTTGA
*
27444583 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAA
27444625 TGATAAAAAT
Statistics
Matches: 273, Mismatches: 62, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
49 41 0.15
50 50 0.18
51 176 0.64
52 6 0.02
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (51 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGAAAAACTTTGA
Found at i:27444369 original size:102 final size:102
Alignment explanation
Indices: 27444225--27444623 Score: 461
Period size: 102 Copynumber: 3.9 Consensus size: 102
27444215 AGTGAAAGTG
* * * * * *
27444225 ATGGTCACGTATGTAGTACTATGTGTAGGCTACTATGCGTACCGAATAGCTTTGATCACGTGTGT
1 ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGATCACGTGTGT
*
27444290 AGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA
66 AGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
*
27444327 ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACC-AAGAAGCTTTGAGCACGTGTG
1 ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAA-AAGCTTTGATCACGTGTG
* * *
27444391 TAGTACTGTGTGAATGCTACTACGTGTATCGGTAAACT-
65 TAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TA
* * * * ** * *
27444429 ATGGTTACATGTGTAGTACTAAGTGAAGACTACAATGGGTACAAAAAAGCTTTGGTCACGTATGT
1 ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGATCACGTGTGT
* *
27444494 AGTACTATGTGAAGGCTACTACGTG-AGCCATAAA-A
66 AGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
* * * * * * *
27444529 CTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGTAAAA-C--TGATCACGTGT
1 -ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AAAAGCTTTGATCACGTGT
27444591 GTAGTACTATGTGAAGGCTACTACGTGTATCGA
64 GTAGTACTATGTGAAGGCTACTACGTGTATCGA
27444624 ATGATAAAAA
Statistics
Matches: 252, Mismatches: 38, Indels: 16
0.82 0.12 0.05
Matches are distributed among these distances:
99 36 0.14
100 3 0.01
101 41 0.16
102 169 0.67
103 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (102 bp):
ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAAAAGCTTTGATCACGTGTGT
AGTACTATGTGAAGGCTACTACGTGTATCGATAAATA
Found at i:27448155 original size:16 final size:15
Alignment explanation
Indices: 27448112--27448165 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
27448102 AAATTCCGTC
*
27448112 TATTTATTTATTTTTA
1 TATTTA-TTATATTTA
27448128 TATTT-TTATATTTA
1 TATTTATTATATTTA
* *
27448142 TATTTATGTTTATTTT
1 TATTTAT-TATATTTA
27448158 TATTTATT
1 TATTTATT
27448166 CTCAAATTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 13 0.39
15 2 0.06
16 18 0.55
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (15 bp):
TATTTATTATATTTA
Found at i:27452801 original size:16 final size:16
Alignment explanation
Indices: 27452780--27452811 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
27452770 TGATTAAAAG
*
27452780 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
27452796 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
27452812 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:27453897 original size:77 final size:77
Alignment explanation
Indices: 27453798--27453954 Score: 278
Period size: 77 Copynumber: 2.0 Consensus size: 77
27453788 TAAAGGAGTG
*
27453798 TTTTATGGCATATCTTAAGTAATGGAATGTTATGAATTTTAAGATTAATTTTCTAGTCAAATGAA
1 TTTTATGGCATATCTTAAGTAATGGAATGTTATGAATTTTAAGATTAATTTGCTAGTCAAATGAA
27453863 TTTTGAGATTAA
66 TTTTGAGATTAA
* * *
27453875 TTTTTTGGCATATTTTAAGTAATGGAATGTTATGAATTTTGAGATTAATTTGCTAGTCAAATGAA
1 TTTTATGGCATATCTTAAGTAATGGAATGTTATGAATTTTAAGATTAATTTGCTAGTCAAATGAA
27453940 TTTTGAGATTAA
66 TTTTGAGATTAA
27453952 TTT
1 TTT
27453955 GCTAGTCAAA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.33, C:0.04, G:0.17, T:0.46
Consensus pattern (77 bp):
TTTTATGGCATATCTTAAGTAATGGAATGTTATGAATTTTAAGATTAATTTGCTAGTCAAATGAA
TTTTGAGATTAA
Found at i:27453939 original size:29 final size:29
Alignment explanation
Indices: 27453906--27453967 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
27453896 ATGGAATGTT
27453906 ATGAATTTTGAGATTAATTTGCTAGTCAA
1 ATGAATTTTGAGATTAATTTGCTAGTCAA
27453935 ATGAATTTTGAGATTAATTTGCTAGTCAA
1 ATGAATTTTGAGATTAATTTGCTAGTCAA
27453964 ATGA
1 ATGA
27453968 CAAATGAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.40
Consensus pattern (29 bp):
ATGAATTTTGAGATTAATTTGCTAGTCAA
Found at i:27460158 original size:47 final size:47
Alignment explanation
Indices: 27460104--27460700 Score: 855
Period size: 47 Copynumber: 12.6 Consensus size: 47
27460094 TATTTGAATA
* *
27460104 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27460151 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
27460200 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
27460247 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27460296 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
27460343 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27460392 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
27460439 AATGTGAACA-TGCACATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27460486 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
27460533 AATGTGAACA-TGTGTATGTGTGATAAGGCTGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27460580 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
27460627 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
27460674 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
27460701 TCCCGAAGGG
Statistics
Matches: 511, Mismatches: 29, Indels: 20
0.91 0.05 0.04
Matches are distributed among these distances:
46 2 0.00
47 372 0.73
49 135 0.26
50 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:27460390 original size:22 final size:22
Alignment explanation
Indices: 27460362--27460484 Score: 65
Period size: 22 Copynumber: 5.3 Consensus size: 22
27460352 GTGTATATAT
27460362 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
27460384 ATGTGATGAATG-TGAACATGTG-TA
1 ATGTGAT-AAGGCCG-A-ATG-GCCA
*
27460408 TGTGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* *
27460431 ATGTGATGAATG-TGAACAT-GCACA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
27460455 TATGAGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
27460478 ATGTGAT
1 ATGTGAT
27460485 GAATGTGAAC
Statistics
Matches: 73, Mismatches: 14, Indels: 28
0.63 0.12 0.24
Matches are distributed among these distances:
22 22 0.30
23 18 0.25
24 18 0.25
25 15 0.21
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:27460521 original size:94 final size:95
Alignment explanation
Indices: 27460104--27460700 Score: 877
Period size: 96 Copynumber: 6.3 Consensus size: 95
27460094 TATTTGAATA
* *
27460104 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATAT
* *
27460168 ATATGTGATAAGGCCTAATGGCCGATGTGATG
64 ATATGTGATAAGGCCGAATGGCCAATGTGATG
27460200 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATAT
27460264 ATATGTGATAAGGCCGAATGGCCAATGTGATG
64 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27460296 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATA
27460361 TATGTGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
27460392 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-CACA
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGATATA
*
27460455 TATGAGATAAGGCCGAATGGCCAATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
27460486 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG-TGTA
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGATATA
* *
27460549 TGTGTGATAAGGCTGAATGGCCAATGTGATG
65 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
27460580 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-TATAT
1 AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATAT
27460644 ATGTGATAAGGCCGAATGGCCAATGTGATG
66 ATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
27460674 GATGTGGAA-GTGTATAAATGTGATAAG
1 AATGT-GAACATGTATATATGTGATAAG
27460701 TCCCGAAGGG
Statistics
Matches: 470, Mismatches: 27, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
93 1 0.00
94 223 0.47
95 3 0.01
96 241 0.51
97 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (95 bp):
AATGTGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATAT
ATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:27463940 original size:17 final size:17
Alignment explanation
Indices: 27463918--27463953 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
27463908 CTTTTTTATT
27463918 TTAAATACCCACAAGAG
1 TTAAATACCCACAAGAG
27463935 TTAAATACCCACAAGAG
1 TTAAATACCCACAAGAG
27463952 TT
1 TT
27463954 TCCTTGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.22
Consensus pattern (17 bp):
TTAAATACCCACAAGAG
Found at i:27477314 original size:25 final size:26
Alignment explanation
Indices: 27477270--27477320 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
27477260 CCAAGTAAAG
27477270 AATGAAAAGAAAAATTGTATTTTCTT
1 AATGAAAAGAAAAATTGTATTTTCTT
27477296 AATGAAAAGAAAAA-TGTATTTTCTT
1 AATGAAAAGAAAAATTGTATTTTCTT
27477321 TTCATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.47, C:0.04, G:0.12, T:0.37
Consensus pattern (26 bp):
AATGAAAAGAAAAATTGTATTTTCTT
Found at i:27481356 original size:40 final size:40
Alignment explanation
Indices: 27481304--27481493 Score: 265
Period size: 40 Copynumber: 4.8 Consensus size: 40
27481294 ATAACCACAA
* * * *
27481304 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
27481344 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCATCTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
27481384 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
27481424 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
27481464 GCATAAATGCCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
27481494 GTATTCAAAT
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 132 0.97
41 4 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:27483262 original size:18 final size:15
Alignment explanation
Indices: 27483225--27483265 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 15
27483215 TTCATTACTT
27483225 TTTCTTTTTTTATTC
1 TTTCTTTTTTTATTC
27483240 TTTCTTTTATTTATTTCC
1 TTTCTTTT-TTTA-TT-C
27483258 TTTCTTTT
1 TTTCTTTT
27483266 GCATAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.35
16 4 0.17
17 2 0.09
18 9 0.39
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCTTTTTTTATTC
Found at i:27493312 original size:138 final size:138
Alignment explanation
Indices: 27493163--27493449 Score: 457
Period size: 138 Copynumber: 2.1 Consensus size: 138
27493153 AAGAACATAG
* *
27493163 ATATAATTAATATATGAATTTGGTTCATACAAAATATTAATTGTCTATATTTTACCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * * *
27493228 AATATAAATAATTATATTAATTAATTTCGGTCCAAATATAAAAGACATGAAAATTAATATTTTTT
66 AATATAAATAATTATATTAATTAACTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
**
27493293 TGGAAAGA
131 TAAAAAGA
**
27493301 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGGATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
*
27493366 AATATAAATAGTTATATTAATTAACTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
66 AATATAAATAATTATATTAATTAACTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
*
27493431 TAAAAATA
131 TAAAAAGA
*
27493439 ATCTAATTAAT
1 ATATAATTAAT
27493450 TTTTCTAACT
Statistics
Matches: 136, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
138 136 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
AATATAAATAATTATATTAATTAACTTCGATCAAAATATAAAAGACATGAAAATTAATATTCTTT
TAAAAAGA
Found at i:27495998 original size:15 final size:15
Alignment explanation
Indices: 27495980--27496008 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27495970 TCATTCTTTC
27495980 ATTTTTCATCCTTCT
1 ATTTTTCATCCTTCT
27495995 ATTTTTCATCCTTC
1 ATTTTTCATCCTTC
27496009 ATCTCCCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTTTCATCCTTCT
Found at i:27502489 original size:17 final size:17
Alignment explanation
Indices: 27502448--27502494 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
27502438 ATATAGATAT
*
27502448 TAATAATATATAAATGTA
1 TAATAATAT-TAAATGGA
* *
27502466 AAATAATATTATATGGA
1 TAATAATATTAAATGGA
27502483 TAATAATATTAA
1 TAATAATATTAA
27502495 TACTTTTCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
TAATAATATTAAATGGA
Found at i:27512535 original size:2 final size:2
Alignment explanation
Indices: 27512528--27512557 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
27512518 AGGTTTGTTG
27512528 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
27512558 GGTAGATTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:27520600 original size:11 final size:11
Alignment explanation
Indices: 27520584--27520614 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
27520574 ATCAATCCAA
*
27520584 CACAAGCTTGG
1 CACAAGCCTGG
27520595 CACAAGCCTGG
1 CACAAGCCTGG
27520606 CACAAGCCT
1 CACAAGCCT
27520615 AAGCATCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (11 bp):
CACAAGCCTGG
Found at i:27529187 original size:13 final size:13
Alignment explanation
Indices: 27529169--27529228 Score: 86
Period size: 13 Copynumber: 4.6 Consensus size: 13
27529159 AGTTTCTTTG
27529169 AAAAAAATTCGAA
1 AAAAAAATTCGAA
*
27529182 AAAAAAATTTGAA
1 AAAAAAATTCGAA
27529195 AAAAAAATTC-AGA
1 AAAAAAATTCGA-A
*
27529208 AAAAAAATTTGAA
1 AAAAAAATTCGAA
27529221 AAAAAAAT
1 AAAAAAAT
27529229 AGTTTCCATT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
12 1 0.02
13 40 0.95
14 1 0.02
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.18
Consensus pattern (13 bp):
AAAAAAATTCGAA
Found at i:27529210 original size:26 final size:26
Alignment explanation
Indices: 27529169--27529228 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
27529159 AGTTTCTTTG
27529169 AAAAAAATTCGAAAAAAAAATTTGAA
1 AAAAAAATTCGAAAAAAAAATTTGAA
27529195 AAAAAAATTC-AGAAAAAAAATTTGAA
1 AAAAAAATTCGA-AAAAAAAATTTGAA
27529221 AAAAAAAT
1 AAAAAAAT
27529229 AGTTTCCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 1 0.03
26 32 0.97
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.18
Consensus pattern (26 bp):
AAAAAAATTCGAAAAAAAAATTTGAA
Found at i:27538638 original size:9 final size:9
Alignment explanation
Indices: 27538621--27538661 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
27538611 TTAGGTTATT
*
27538621 TTAAGTTAA
1 TTAATTTAA
27538630 TTAATTTAA
1 TTAATTTAA
*
27538639 TTAGTTTAA
1 TTAATTTAA
*
27538648 TTAGTTTAA
1 TTAATTTAA
27538657 TTAAT
1 TTAAT
27538662 ATTTTAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (9 bp):
TTAATTTAA
Found at i:27541425 original size:28 final size:28
Alignment explanation
Indices: 27541385--27541440 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
27541375 ACATGTTAGT
27541385 GCATTCATACATAATTCACTTGAAGTAA
1 GCATTCATACATAATTCACTTGAAGTAA
27541413 GCATTCATACATAATTCACTTGAAGTAA
1 GCATTCATACATAATTCACTTGAAGTAA
27541441 ACATATGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (28 bp):
GCATTCATACATAATTCACTTGAAGTAA
Found at i:27545701 original size:22 final size:22
Alignment explanation
Indices: 27545673--27545782 Score: 98
Period size: 22 Copynumber: 4.9 Consensus size: 22
27545663 AAGGCAACAC
27545673 AATGCCACAAAAGCCAAATCAA
1 AATGCCACAAAAGCCAAATCAA
* *
27545695 AATGCCACAAAAGCCAAATTAG
1 AATGCCACAAAAGCCAAATCAA
*
27545717 AATACCAC-AAAGACCAAATCAGAA
1 AATGCCACAAAAG-CCAAATC--AA
* **
27545741 AATGCCTCAAGGGCC-AATGCAA
1 AATGCCACAAAAGCCAAAT-CAA
* *
27545763 AATACCACAAAGGCCAAATC
1 AATGCCACAAAAGCCAAATC
27545783 TGAATGTCAT
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
21 4 0.06
22 48 0.69
23 6 0.09
24 10 0.14
25 2 0.03
ACGTcount: A:0.50, C:0.26, G:0.13, T:0.11
Consensus pattern (22 bp):
AATGCCACAAAAGCCAAATCAA
Found at i:27557401 original size:103 final size:104
Alignment explanation
Indices: 27557157--27557422 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
27557147 GTTGTACATA
** *
27557157 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
27557222 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
27557261 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
27557325 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
27557364 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
27557423 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:27564891 original size:103 final size:104
Alignment explanation
Indices: 27564648--27564912 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
27564638 GTTGTACATA
** *
27564648 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
27564713 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
27564752 GAGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
27564816 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
27564854 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
27564913 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
102 55 0.37
103 70 0.47
104 24 0.16
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:27577332 original size:27 final size:26
Alignment explanation
Indices: 27577302--27577372 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
27577292 CGTTCCAAGC
* *
27577302 CACAACTCGTGTAAGCATGCC-CATTTT
1 CACAGCTCGTGTGAGCAT-CCTC-TTTT
*
27577329 CACAGCTCATGTGAGCATCCTCTTTT
1 CACAGCTCGTGTGAGCATCCTCTTTT
27577355 CACAGCTCGTGTGAGCAT
1 CACAGCTCGTGTGAGCAT
27577373 ATATGGAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 23 0.59
27 16 0.41
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.30
Consensus pattern (26 bp):
CACAGCTCGTGTGAGCATCCTCTTTT
Found at i:27580906 original size:39 final size:38
Alignment explanation
Indices: 27580863--27581155 Score: 327
Period size: 39 Copynumber: 7.5 Consensus size: 38
27580853 ATATTTTAAG
* *
27580863 TATTGTGATATATGCTTAAATGATATGAGATTATATGTA
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATG-A
** *
27580902 TATTGTGATATATGCTCGAATGTTATGTGATTATACGA
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATGA
* *
27580940 GTATTTTGATATATGCTTAAATGTTATGAGATTATATGTA
1 -TATTGTGATATATGCTTAAATGTTATGTGATTATATG-A
* * * *
27580980 CACTGTGATATATGCTTAAATGTTACGTGATTATATGGG
1 TATTGTGATATATGCTTAAATGTTATGTGATTATAT-GA
** * *
27581019 TATTGTGATATATGCTTGGATGTTAGGTGATTATACGA
1 TATTGTGATATATGCTTAAATGTTATGTGATTATATGA
27581057 GTATTGTGATATATGCTTAAATGTTATGTGATTATATGA
1 -TATTGTGATATATGCTTAAATGTTATGTGATTATATGA
** * *
27581096 GTATTGTGATATATGCTTGGATGTTAGGTGATTATATGTG
1 -TATTGTGATATATGCTTAAATGTTATGTGATTATATG-A
*
27581136 TAATAG-GATATATGCTTAAA
1 T-ATTGTGATATATGCTTAAA
27581156 AGTGAATATG
Statistics
Matches: 214, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
38 2 0.01
39 207 0.97
40 5 0.02
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (38 bp):
TATTGTGATATATGCTTAAATGTTATGTGATTATATGA
Found at i:27580951 original size:78 final size:78
Alignment explanation
Indices: 27580861--27581155 Score: 378
Period size: 78 Copynumber: 3.8 Consensus size: 78
27580851 AGATATTTTA
* **
27580861 AGTATTGTGATATATGCTTAAATGATATGAGATTATATGTATATTGTGATATATGCTCGAATGTT
1 AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTGATATATGCTTAAATGTT
*
27580926 ATGTGATTATACG
66 ATGTGATTATATG
* * *
27580939 AGTATTTTGATATATGCTTAAATGTTATGAGATTATATGTACACTGTGATATATGCTTAAATGTT
1 AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTGATATATGCTTAAATGTT
*
27581004 ACGTGATTATATG
66 ATGTGATTATATG
* ** * * *
27581017 GGTATTGTGATATATGCTTGGATGTTAGGTGATTATACG-AGTATTGTGATATATGCTTAAATGT
1 AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTA-TATTGTGATATATGCTTAAATGT
27581081 TATGTGATTATATG
65 TATGTGATTATATG
** * * * *
27581095 AGTATTGTGATATATGCTTGGATGTTAGGTGATTATATGTGTAATAG-GATATATGCTTAAA
1 AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTAT-ATTGTGATATATGCTTAAA
27581156 AGTGAATATG
Statistics
Matches: 192, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
77 1 0.01
78 188 0.98
79 3 0.02
ACGTcount: A:0.31, C:0.05, G:0.22, T:0.43
Consensus pattern (78 bp):
AGTATTGTGATATATGCTTAAATGTTATGAGATTATATGTATATTGTGATATATGCTTAAATGTT
ATGTGATTATATG
Found at i:27581072 original size:117 final size:117
Alignment explanation
Indices: 27580866--27581152 Score: 398
Period size: 117 Copynumber: 2.5 Consensus size: 117
27580856 TTTTAAGTAT
* * * * * *
27580866 TGTGATATATGCTTAAATGATATGAGATTATATGTATATTGTGATATATGCTCGAATGTTATGTG
1 TGTGATATATGCTTAAATGTTACGTGATTATATGTGTATTGTGATATATGCTTGAATGTTAGGTG
*
27580931 ATTATACGAGTATTTTGATATATGCTTAAATGTTATGAGATTATATGTA-CAC
66 ATTATACGAGTATTGTGATATATGCTTAAATGTTATGAGATTATATG-AGCAC
* *
27580983 TGTGATATATGCTTAAATGTTACGTGATTATATGGGTATTGTGATATATGCTTGGATGTTAGGTG
1 TGTGATATATGCTTAAATGTTACGTGATTATATGTGTATTGTGATATATGCTTGAATGTTAGGTG
* * *
27581048 ATTATACGAGTATTGTGATATATGCTTAAATGTTATGTGATTATATGAGTAT
66 ATTATACGAGTATTGTGATATATGCTTAAATGTTATGAGATTATATGAGCAC
** * *
27581100 TGTGATATATGCTTGGATGTTAGGTGATTATATGTGTAATAG-GATATATGCTT
1 TGTGATATATGCTTAAATGTTACGTGATTATATGTGT-ATTGTGATATATGCTT
27581153 AAAAGTGAAT
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
116 1 0.01
117 147 0.97
118 3 0.02
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (117 bp):
TGTGATATATGCTTAAATGTTACGTGATTATATGTGTATTGTGATATATGCTTGAATGTTAGGTG
ATTATACGAGTATTGTGATATATGCTTAAATGTTATGAGATTATATGAGCAC
Found at i:27591855 original size:50 final size:50
Alignment explanation
Indices: 27591797--27591903 Score: 162
Period size: 50 Copynumber: 2.1 Consensus size: 50
27591787 TTATTGAGGT
*
27591797 TATGAGAGGTC-CCACATAAGACCATGTCTGGGACATGGAATTGGCACCGA
1 TATGAGAGGTCTCC-CATAAGACCATGTCTGGGACATGGAATCGGCACCGA
* * *
27591847 TATGAGAGGTCTCCCGTAAGACCATGTCTGGGAGATGGCATCGGCACCGA
1 TATGAGAGGTCTCCCATAAGACCATGTCTGGGACATGGAATCGGCACCGA
27591897 TATGAGA
1 TATGAGA
27591904 ACTCCTATGT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 50 0.96
51 2 0.04
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (50 bp):
TATGAGAGGTCTCCCATAAGACCATGTCTGGGACATGGAATCGGCACCGA
Found at i:27592782 original size:17 final size:19
Alignment explanation
Indices: 27592760--27592796 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
27592750 AGGCAAAGAA
27592760 ATTTT-ATATTA-TGAGAT
1 ATTTTAATATTAGTGAGAT
*
27592777 ATTTTAATTTTAGTGAGAT
1 ATTTTAATATTAGTGAGAT
27592796 A
1 A
27592797 GGGTCCGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 5 0.29
18 5 0.29
19 7 0.41
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (19 bp):
ATTTTAATATTAGTGAGAT
Found at i:27599408 original size:50 final size:50
Alignment explanation
Indices: 27599313--27599457 Score: 155
Period size: 50 Copynumber: 2.9 Consensus size: 50
27599303 TATTGAGGTT
* * * ** *
27599313 ATGAGAGGTCTCACGTAAAACCATGTCTGGGACATGGTGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGATATGGCATTGGCACCAAG
* * *
27599363 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGATATGGCATGGGCACCAAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGATATGGCATTGGCACCAAG
* ** * * *
27599413 ATAAGAACTCCCATGTAAGACCATATCTAGGATATGGCATTGGCA
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGATATGGCATTGGCA
27599458 TGTTATTATC
Statistics
Matches: 78, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 78 1.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGATATGGCATTGGCACCAAG
Found at i:27599678 original size:12 final size:12
Alignment explanation
Indices: 27599661--27599699 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
27599651 ATGAGTTATT
27599661 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
27599673 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
27599685 TAAGAAAGTAAG
1 TAAGTAAGCAAG
27599697 TAA
1 TAA
27599700 AGAAGAAGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.56, C:0.05, G:0.21, T:0.18
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:27599687 original size:20 final size:20
Alignment explanation
Indices: 27599662--27599710 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
27599652 TGAGTTATTT
27599662 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
* *
27599682 AAGTAAGAAAGTAAGTAAAG
1 AAGTAAGCAAGTAAGTAAAC
27599702 AAG-AAGCAA
1 AAGTAAGCAA
27599711 AGACCATGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.59, C:0.06, G:0.22, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:27602148 original size:81 final size:80
Alignment explanation
Indices: 27602059--27602209 Score: 194
Period size: 81 Copynumber: 1.9 Consensus size: 80
27602049 CCTCAAAGGC
* * * *
27602059 TTTTCTTTCATGATTCGCCACAATGAATTTTCTTTCATACCTCACCATAATGGCTTTCCTTTCAT
1 TTTTCTTTCATGATTCACCACAAAGAATTTTCTTTCATACCTCACCACAAAGGCTTTCCTTTCAT
27602124 ATTTCACCACAATGG
66 ATTTCACCACAATGG
** ** ** *
27602139 TTTTCCTTTCATGATTCATTACAAAGGCTTTTCTTTCATATTTCACCACAAAGGCTTTCTTTTCA
1 TTTT-CTTTCATGATTCACCACAAAGAATTTTCTTTCATACCTCACCACAAAGGCTTTCCTTTCA
27602204 TATTTC
65 TATTTC
27602210 GCTACAAAGG
Statistics
Matches: 59, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
80 4 0.07
81 55 0.93
ACGTcount: A:0.23, C:0.25, G:0.08, T:0.44
Consensus pattern (80 bp):
TTTTCTTTCATGATTCACCACAAAGAATTTTCTTTCATACCTCACCACAAAGGCTTTCCTTTCAT
ATTTCACCACAATGG
Found at i:27602156 original size:27 final size:26
Alignment explanation
Indices: 27602059--27602209 Score: 126
Period size: 27 Copynumber: 5.6 Consensus size: 26
27602049 CCTCAAAGGC
* *
27602059 TTTTCTTTCATGA-TTCGCCACAATGAA
1 TTTTCTTTCAT-ATTTCACCACAATG-G
** *
27602086 TTTTCTTTCATACCTCACCATAATGG
1 TTTTCTTTCATATTTCACCACAATGG
*
27602112 CTTTCCTTTCATATTTCACCACAATGG
1 -TTTTCTTTCATATTTCACCACAATGG
** *
27602139 TTTTCCTTTCATGA-TTCATTACAAAGG
1 TTTT-CTTTCAT-ATTTCACCACAATGG
*
27602166 CTTTTCTTTCATATTTCACCACAAAGG
1 -TTTTCTTTCATATTTCACCACAATGG
*
27602193 CTTTCTTTTCATATTTC
1 TTTTC-TTTCATATTTC
27602210 GCTACAAAGG
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
26 9 0.09
27 88 0.86
28 5 0.05
ACGTcount: A:0.23, C:0.25, G:0.08, T:0.44
Consensus pattern (26 bp):
TTTTCTTTCATATTTCACCACAATGG
Found at i:27602168 original size:54 final size:54
Alignment explanation
Indices: 27602052--27602228 Score: 160
Period size: 54 Copynumber: 3.3 Consensus size: 54
27602042 TAATTCGCCT
* * * ** * ** *
27602052 CAAAGGCTTTTCTTTCATGA-TTCGCCACAATGAATTTTCTTTCATACCTCACCA
1 CAAAGGCTTTCCTTTCAT-ATTTCACCACAAAGGCTTTCCTTTCATATTTCACTA
* * * * *
27602106 TAATGGCTTTCCTTTCATATTTCACCACAATGGTTTTCCTTTCATGA-TTCATTA
1 CAAAGGCTTTCCTTTCATATTTCACCACAAAGGCTTTCCTTTCAT-ATTTCACTA
* * *
27602160 CAAAGGCTTTTCTTTCATATTTCACCACAAAGGCTTTCTTTTCATATTTCGCTA
1 CAAAGGCTTTCCTTTCATATTTCACCACAAAGGCTTTCCTTTCATATTTCACTA
*
27602214 CAAAGGCCTTCCTTT
1 CAAAGGCTTTCCTTT
27602229 TTTACATGTT
Statistics
Matches: 100, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
53 2 0.02
54 97 0.97
55 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.10, T:0.41
Consensus pattern (54 bp):
CAAAGGCTTTCCTTTCATATTTCACCACAAAGGCTTTCCTTTCATATTTCACTA
Found at i:27602216 original size:27 final size:27
Alignment explanation
Indices: 27602087--27602229 Score: 121
Period size: 27 Copynumber: 5.3 Consensus size: 27
27602077 CACAATGAAT
** * *
27602087 TTTC-TTTCATACCTCACCATAATGGC
1 TTTCTTTTCATATTTCACCACAAAGGC
* * *
27602113 TTTCCTTTCATATTTCACCACAATGGT
1 TTTCTTTTCATATTTCACCACAAAGGC
* **
27602140 TTTCCTTTCATGA-TTCATTACAAAGGC
1 TTTCTTTTCAT-ATTTCACCACAAAGGC
27602167 TTT-TCTTTCATATTTCACCACAAAGGC
1 TTTCT-TTTCATATTTCACCACAAAGGC
* *
27602194 TTTCTTTTCATATTTCGCTACAAAGGCC
1 TTTCTTTTCATATTTCACCACAAAGG-C
*
27602222 TTCCTTTT
1 TTTCTTTT
27602230 TTACATGTTT
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.05
27 82 0.85
28 10 0.10
ACGTcount: A:0.22, C:0.26, G:0.08, T:0.43
Consensus pattern (27 bp):
TTTCTTTTCATATTTCACCACAAAGGC
Found at i:27602546 original size:15 final size:15
Alignment explanation
Indices: 27602526--27602556 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
27602516 AAAAAGAAAA
27602526 AACACAACCTTAGGT
1 AACACAACCTTAGGT
27602541 AACACAACCTTAGGT
1 AACACAACCTTAGGT
27602556 A
1 A
27602557 TCCTTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.19
Consensus pattern (15 bp):
AACACAACCTTAGGT
Found at i:27611871 original size:23 final size:20
Alignment explanation
Indices: 27611845--27611888 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 20
27611835 CTGAGAAATA
27611845 TTAAATATATATATATTTTATTT
1 TTAAA-ATATA-ATATTTT-TTT
27611868 TTAAAATATAATATTTTTTT
1 TTAAAATATAATATTTTTTT
27611888 T
1 T
27611889 ATTTTAAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.19
21 7 0.33
22 5 0.24
23 5 0.24
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
TTAAAATATAATATTTTTTT
Found at i:27611876 original size:24 final size:25
Alignment explanation
Indices: 27611847--27611893 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
27611837 GAGAAATATT
27611847 AAATAT-ATATATATTTTATTTTTA
1 AAATATAATATATATTTTATTTTTA
* *
27611871 AAATATAATATTTTTTTTATTTT
1 AAATATAATATATATTTTATTTT
27611894 AAGTTCATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
AAATATAATATATATTTTATTTTTA
Found at i:27612023 original size:59 final size:59
Alignment explanation
Indices: 27611960--27612138 Score: 259
Period size: 68 Copynumber: 2.9 Consensus size: 59
27611950 TCAAGTTTGT
*
27611960 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATAATTTGATAAA
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
27612019 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATT---AC-----A-ACAATTAATACAATTAATAATTTGAT
27612084 AAA
57 AAA
*
27612087 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAACAATT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATT
27612139 AATAATTTGA
Statistics
Matches: 109, Mismatches: 2, Indels: 18
0.84 0.02 0.14
Matches are distributed among these distances:
59 47 0.43
60 1 0.01
62 2 0.02
65 2 0.02
67 1 0.01
68 56 0.51
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.40
Consensus pattern (59 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATAATTTGATAAA
Found at i:27612061 original size:9 final size:9
Alignment explanation
Indices: 27612049--27612076 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
27612039 TTTTATTACA
27612049 ACAATTAAT
1 ACAATTAAT
27612058 ACAATTAAT
1 ACAATTAAT
27612067 ACAATTAAT
1 ACAATTAAT
27612076 A
1 A
27612077 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:27612067 original size:68 final size:68
Alignment explanation
Indices: 27611990--27612160 Score: 319
Period size: 68 Copynumber: 2.5 Consensus size: 68
27611980 TTTTGTTACA
27611990 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
27612055 AAT
66 AAT
27612058 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
27612123 AAT
66 AAT
*
27612126 ACAATT-A-ACAATTAATAATTTGATAATTTTACTAA
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAA
27612161 CAATTAATTT
Statistics
Matches: 102, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
66 27 0.26
67 1 0.01
68 74 0.73
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (68 bp):
ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
AAT
Found at i:27612170 original size:16 final size:16
Alignment explanation
Indices: 27612149--27612190 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
27612139 AATAATTTGA
*
27612149 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
27612165 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
27612181 TAGTTTTAAT
1 TAATTTTAAT
27612191 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:27612174 original size:22 final size:21
Alignment explanation
Indices: 27612164--27612222 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
27612154 TTACTAACAA
* *
27612164 TTAATTTTAATAACAATTAGTT
1 TTAATTTTAATAA-AAATAATT
*
27612186 TTAATTTTATTAAAAATAATT
1 TTAATTTTAATAAAAATAATT
*
27612207 TTAATTTTAATTAAAA
1 TTAATTTTAATAAAAA
27612223 CGGGCCGGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 20 0.62
22 12 0.38
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TTAATTTTAATAAAAATAATT
Found at i:27612179 original size:59 final size:66
Alignment explanation
Indices: 27611990--27612182 Score: 283
Period size: 68 Copynumber: 3.0 Consensus size: 66
27611980 TTTTGTTACA
27611990 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA-GTTAGATTTTA-TACAACAATT
27612055 AAT
64 AAT
27612058 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAATGTTAGATTTTATTACAACAATT
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAA-GTTAGATTTTA-TACAACAATT
27612123 AAT
64 AAT
* *
27612126 ACAATT-A-ACAATTAATAATTTGATAATTTTACTAA-C-AA-TTA-ATTTTA-ATAACAATTA
1 ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAGTTAGATTTTATACAACAATTA
27612183 GTTTTAATTT
Statistics
Matches: 123, Mismatches: 2, Indels: 9
0.92 0.01 0.07
Matches are distributed among these distances:
59 9 0.07
61 6 0.05
62 3 0.02
64 2 0.02
65 1 0.01
66 27 0.22
67 1 0.01
68 74 0.60
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.40
Consensus pattern (66 bp):
ACAATTAATACAATTAATAATTTGATAAATTTACTAATCAAAGTTAGATTTTATACAACAATTAA
T
Found at i:27612210 original size:21 final size:21
Alignment explanation
Indices: 27612164--27612222 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
27612154 TTACTAACAA
* * *
27612164 TTAATTTTAATAACAATTAGTT
1 TTAATTTTATTAA-AAATAATT
27612186 TTAATTTTATTAAAAATAATT
1 TTAATTTTATTAAAAATAATT
27612207 TTAATTTTAATTAAAA
1 TTAATTTT-ATTAAAA
27612223 CGGGCCGGGC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 14 0.42
22 19 0.58
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TTAATTTTATTAAAAATAATT
Found at i:27614377 original size:25 final size:25
Alignment explanation
Indices: 27614333--27614398 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
27614323 AATAAATCAG
*
27614333 CATGCATGTTTCCTTGAATGCCATT
1 CATGCATGCTTCCTTGAATGCCATT
* * * *
27614358 CATGCATGCTTCTTTTAATGTCGTT
1 CATGCATGCTTCCTTGAATGCCATT
27614383 CATGCATGCTCTCCTT
1 CATGCATGCT-TCCTT
27614399 TGCCATTAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
25 30 0.88
26 4 0.12
ACGTcount: A:0.17, C:0.26, G:0.15, T:0.42
Consensus pattern (25 bp):
CATGCATGCTTCCTTGAATGCCATT
Found at i:27618717 original size:40 final size:40
Alignment explanation
Indices: 27618672--27618907 Score: 328
Period size: 40 Copynumber: 5.9 Consensus size: 40
27618662 CGAATACACG
* * * * *
27618672 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * ** * *
27618712 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
27618752 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
27618792 TCACTAGCATGAATGCTCCTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
27618832 TCACTAGCATGAATGCTCTTCGGGACTTAGCCTGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
27618872 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGA
27618908 CATCATTCAA
Statistics
Matches: 175, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:27619254 original size:29 final size:29
Alignment explanation
Indices: 27619220--27619291 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
27619210 ATCAACCACG
* *
27619220 CACACTTAGTGCCATGTACTTT-AAACTCA
1 CACACTTAGTGCCATGCA-TTTCAAACCCA
* *
27619249 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCA
27619278 CACACTTAGTGCCA
1 CACACTTAGTGCCA
27619292 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCA
Found at i:27619337 original size:43 final size:43
Alignment explanation
Indices: 27619278--27619375 Score: 178
Period size: 43 Copynumber: 2.3 Consensus size: 43
27619268 TTCAAGCCCG
27619278 CACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTCA
1 CACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTCA
* *
27619321 CACACTTAGTGCCAATCTTACAACCGTGAACACTTATTGCTCG
1 CACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTCA
27619364 CACACTTAGTGC
1 CACACTTAGTGC
27619376 TGAAAACCAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.29, C:0.32, G:0.13, T:0.27
Consensus pattern (43 bp):
CACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCTCA
Found at i:27621276 original size:37 final size:37
Alignment explanation
Indices: 27621226--27621304 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
27621216 TTATTACGAA
* * *
27621226 GTCTTACCAGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
* *
27621263 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
27621300 GTCTT
1 GTCTT
27621305 TAGAGCTCGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCAGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27621510 original size:47 final size:47
Alignment explanation
Indices: 27621423--27621945 Score: 776
Period size: 47 Copynumber: 11.1 Consensus size: 47
27621413 CCTTTCGGGA
* * * * * * * * *
27621423 CTTATCACATTTATGCACTTCCACATCCATTACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27621470 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
27621517 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27621564 CTTATCACACACATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
27621611 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27621658 CCTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27621705 CCTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
27621752 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27621799 CTTATCACGTATATACACTTTCACATTCATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
27621846 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
27621893 CCTATCACATATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
27621942 CTTA
1 CTTA
27621946 CTATCATTTC
Statistics
Matches: 443, Mismatches: 31, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
47 403 0.91
49 40 0.09
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:27630764 original size:41 final size:40
Alignment explanation
Indices: 27630698--27630900 Score: 217
Period size: 41 Copynumber: 5.0 Consensus size: 40
27630688 AAAATATTGT
* * *
27630698 TGAATTGCAAATACGTGCCTCTGTTTGTACTTCAGTACCCC
1 TGAATTGCACATACGTGCC-CTATTTGTACTTCGGTACCCC
* * * * * *
27630739 TGAATTGCACATATGTACCATTGTTTATACTTTGGTACCCC
1 TGAATTGCACATACGTGCC-CTATTTGTACTTCGGTACCCC
* *
27630780 TGAATTGCACATACGTGCCCTATTTGTATTTCGGTACCCT
1 TGAATTGCACATACGTGCCCTATTTGTACTTCGGTACCCC
* * *
27630820 TGAATTGCACATAGGTGCCCCTATTTGTACTTCGATACCTC
1 TGAATTGCACATACGTG-CCCTATTTGTACTTCGGTACCCC
* * *
27630861 TGAATTGCAGATACGTGCCCGTATTTATACTTCGATACCC
1 TGAATTGCACATACGTGCCC-TATTTGTACTTCGGTACCC
27630901 ATGTACTTAT
Statistics
Matches: 135, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
40 34 0.25
41 101 0.75
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (40 bp):
TGAATTGCACATACGTGCCCTATTTGTACTTCGGTACCCC
Found at i:27630825 original size:81 final size:81
Alignment explanation
Indices: 27630698--27630900 Score: 235
Period size: 81 Copynumber: 2.5 Consensus size: 81
27630688 AAAATATTGT
* * * * *
27630698 TGAATTGCAAATACGTGCCTCTGTTTGTACTTCAGTACCCCTGAATTGCACATATGTACCATTGT
1 TGAATTGCAAATACGTGCC-CTATTTGTACTTCGGTACCCCTGAATTGCACATAGGTACCACTAT
* *
27630763 TTATACTTTGGTACCCC
65 TTATACTTCGATACCCC
* * * * *
27630780 TGAATTGCACATACGTGCCCTATTTGTATTTCGGTACCCTTGAATTGCACATAGGTGCCCCTATT
1 TGAATTGCAAATACGTGCCCTATTTGTACTTCGGTACCCCTGAATTGCACATAGGTACCACTATT
* *
27630845 TGTACTTCGATACCTC
66 TATACTTCGATACCCC
* * *
27630861 TGAATTGCAGATACGTGCCCGTATTTATACTTCGATACCC
1 TGAATTGCAAATACGTGCCC-TATTTGTACTTCGGTACCC
27630901 ATGTACTTAT
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
81 68 0.67
82 34 0.33
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (81 bp):
TGAATTGCAAATACGTGCCCTATTTGTACTTCGGTACCCCTGAATTGCACATAGGTACCACTATT
TATACTTCGATACCCC
Done.