Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 95 of 211
Found at i:29799187 original size:47 final size:47
Alignment explanation
Indices: 29799130--29799386 Score: 356
Period size: 47 Copynumber: 5.4 Consensus size: 47
29799120 ATTGATGTAC
* * *
29799130 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
29799177 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
29799226 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
29799273 ACA-TGTGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
29799320 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
29799367 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
29799387 TCCCGAAGGG
Statistics
Matches: 194, Mismatches: 12, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
46 1 0.01
47 152 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:29802427 original size:15 final size:15
Alignment explanation
Indices: 29802382--29802489 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
29802372 CCAATATCTC
29802382 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
29802397 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
29802412 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
29802427 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
29802442 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
29802457 GACTTTCCAT-TATTT
1 GA-TACCCATATCTTT
29802472 GATACCCATATCTTT
1 GATACCCATATCTTT
29802487 GAT
1 GAT
29802490 TTTCCATAAA
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:29802496 original size:30 final size:30
Alignment explanation
Indices: 29802372--29802495 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
29802362 TTTTATTATG
*
29802372 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
29802403 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
29802433 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
29802463 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
29802493 CCA
1 CCA
29802496 TAAATATGGA
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
30 83 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.25, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:29807093 original size:30 final size:30
Alignment explanation
Indices: 29807047--29807140 Score: 143
Period size: 30 Copynumber: 3.1 Consensus size: 30
29807037 TTTTATTATG
*
29807047 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
29807078 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
29807108 CCATTATTTGATACCCATATATTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
29807138 CCA
1 CCA
29807141 TAAATATGGA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 52 0.88
31 7 0.12
ACGTcount: A:0.27, C:0.24, G:0.06, T:0.43
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:29807102 original size:15 final size:15
Alignment explanation
Indices: 29807057--29807134 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
29807047 CCAATATCTC
*
29807057 GATACCCATATCTTT
1 GATACCCATATATTT
**
29807072 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
29807087 GATACCCATATCTTT
1 GATACCCATATATTT
**
29807102 GACTTTCCAT-TATTT
1 GA-TACCCATATATTT
29807117 GATACCCATATATTT
1 GATACCCATATATTT
29807132 GAT
1 GAT
29807135 TTTCCATAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
14 9 0.19
15 30 0.62
16 9 0.19
ACGTcount: A:0.27, C:0.22, G:0.08, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:29809195 original size:40 final size:40
Alignment explanation
Indices: 29809149--29809333 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
29809139 GCTACTCATT
*
29809149 CAAATGCCTTCGGGACATAGCCCGG-TCATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-ATAGTAACTCGCA
* *
29809189 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
29809229 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
29809268 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
29809309 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
29809334 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.63
41 13 0.10
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:29809249 original size:79 final size:80
Alignment explanation
Indices: 29809151--29809333 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
29809141 TACTCATTCA
* *
29809151 AATGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGG-AATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
29809214 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* **
29809231 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
29809295 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
29809310 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
29809334 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 4 0.04
79 58 0.65
80 27 0.30
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:29821012 original size:78 final size:81
Alignment explanation
Indices: 29820869--29821052 Score: 209
Period size: 78 Copynumber: 2.3 Consensus size: 81
29820859 GCTACTCGTT
* * * *
29820869 CAAATGCCTTCGAGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCG-GGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
29820933 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
**
29820949 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGT-ACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
29821011 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
29821028 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
29821053 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
77 3 0.03
78 41 0.46
79 33 0.37
80 13 0.14
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:29821052 original size:40 final size:40
Alignment explanation
Indices: 29820850--29821052 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
29820840 CGGAATTTAA
** * *
29820850 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGAGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
29820890 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
29820930 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
29820969 CCGGA-ATTAGT-ACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
29821008 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
29821048 CCGGA
1 CCGGA
29821053 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
37 2 0.01
38 18 0.13
39 28 0.20
40 80 0.58
41 11 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:29823171 original size:27 final size:27
Alignment explanation
Indices: 29823152--29823542 Score: 432
Period size: 27 Copynumber: 14.5 Consensus size: 27
29823142 GGGTATAACA
*
29823152 ATCATTTTACCCTATGGGGGTATTTCA
1 ATCATTTTACCCTATGGGGGTATTTCG
*
29823179 ATCATTTTACCCTATTGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
*
29823206 ATCATTTTACCCTATAGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
*
29823233 GTCATTTTACCCTATGGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* *
29823260 ATCATTTTACCCTCTAGGGGTATTTC-
1 ATCATTTTACCCTATGGGGGTATTTCG
29823286 AGTCATTTTACCCTATGGGGGTATTTCG
1 A-TCATTTTACCCTATGGGGGTATTTCG
* * *
29823314 GTCATTTTACCCTATGAGGGTATTTCA
1 ATCATTTTACCCTATGGGGGTATTTCG
* * *
29823341 ATCATTTTACCTTATGGAGTTATTTCTG
1 ATCATTTTACCCTATGGGGGTATTTC-G
29823369 -TCATTTTACCCTATGGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* * * *
29823395 GTCATTTTACCCTATAGGCGTATTTTG
1 ATCATTTTACCCTATGGGGGTATTTCG
* * * * *
29823422 GTTATTCTACCTTATGTGGGTATTTC-
1 ATCATTTTACCCTATGGGGGTATTTCG
* * * *
29823448 AGTCCTTTTATCCTATCGGGGTATTTTG
1 A-TCATTTTACCCTATGGGGGTATTTCG
**
29823476 ATCATTTTACCCTCCGGGGGTATTTCG
1 ATCATTTTACCCTATGGGGGTATTTCG
* * *
29823503 ATCAGTTTACCCT-TCGGAGGTATTT-T
1 ATCATTTTACCCTAT-GGGGGTATTTCG
29823529 AGTCATTTTACCCT
1 A-TCATTTTACCCT
29823543 CCGAGGATAT
Statistics
Matches: 304, Mismatches: 52, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.01
27 300 0.99
28 1 0.00
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.43
Consensus pattern (27 bp):
ATCATTTTACCCTATGGGGGTATTTCG
Found at i:29823264 original size:81 final size:81
Alignment explanation
Indices: 29823153--29823562 Score: 486
Period size: 81 Copynumber: 5.1 Consensus size: 81
29823143 GGTATAACAA
*
29823153 TCATTTTACCCTATGGGGGTATTTCAATCATTTTACCCTATTGGGGTATTTC-GATCATTTTACC
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATTGGGGTATTTCAG-TCATTTTACC
*
29823217 CTATAGGGGTATTTCGG
65 CTATGGGGGTATTTCGG
* *
29823234 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTCTAGGGGTATTTCAGTCATTTTACCC
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATTGGGGTATTTCAGTCATTTTACCC
29823299 TATGGGGGTATTTCGG
66 TATGGGGGTATTTCGG
* * * * *
29823315 TCATTTTACCCTATGAGGGTATTTCAATCATTTTACCTTA-TGGAGTTATTTCTGTCATTTTACC
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATTGG-GGTATTTCAGTCATTTTACC
29823379 CTATGGGGGTATTTCGG
65 CTATGGGGGTATTTCGG
* * * * * * * * *
29823396 TCATTTTACCCTATAGGCGTATTTTGGTTATTCTACCTTA-TGTGGGTATTTCAGTCCTTTTATC
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATTG-GGGTATTTCAGTCATTTTACC
* * *
29823460 CTATCGGGGTATTTTGA
65 CTATGGGGGTATTTCGG
** * * *
29823477 TCATTTTACCCTCCGGGGGTATTTCGATCAGTTTACCCT-TCGGAGGTATTTTAGTCATTTTACC
1 TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATTGG-GGTATTTCAGTCATTTTACC
** * *
29823541 CTCCGAGGATATTTCGG
65 CTATGGGGGTATTTCGG
29823558 TCATT
1 TCATT
29823563 ATGTTGACCC
Statistics
Matches: 277, Mismatches: 47, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
80 3 0.01
81 272 0.98
82 2 0.01
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (81 bp):
TCATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATTGGGGTATTTCAGTCATTTTACCC
TATGGGGGTATTTCGG
Found at i:29823553 original size:27 final size:26
Alignment explanation
Indices: 29823467--29823554 Score: 97
Period size: 27 Copynumber: 3.3 Consensus size: 26
29823457 ATCCTATCGG
*
29823467 GGTATTTTGATCATTTTACCCTCCGGG
1 GGTATTTTGATCATTTTACCCTCC-GA
* * *
29823494 GGTATTTCGATCAGTTTACCCTTCGGA
1 GGTATTTTGATCATTTTACCC-TCCGA
29823521 GGTATTTT-AGTCATTTTACCCTCCGA
1 GGTATTTTGA-TCATTTTACCCTCCGA
29823547 GGATATTT
1 GG-TATTT
29823555 CGGTCATTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.14
27 42 0.82
28 2 0.04
ACGTcount: A:0.18, C:0.20, G:0.20, T:0.41
Consensus pattern (26 bp):
GGTATTTTGATCATTTTACCCTCCGA
Found at i:29826103 original size:39 final size:40
Alignment explanation
Indices: 29825995--29826104 Score: 125
Period size: 40 Copynumber: 2.8 Consensus size: 40
29825985 GGCGTTTGGA
* * *
29825995 TAAAAAACGCCGCTAAAAATCAAGCATTAGCAACGCTTTT
1 TAAAAAACGCCACTAAAAGTCGAGCATTAGCAACGCTTTT
* * ***
29826035 AAAAAAACGCCACT-AAAGATCGAGTATTAGTGGCGCTTTT
1 TAAAAAACGCCACTAAAAG-TCGAGCATTAGCAACGCTTTT
29826075 TAAAAAACGCCACTAAAAGT-GAGCATTAGC
1 TAAAAAACGCCACTAAAAGTCGAGCATTAGC
29826105 GGTATTTTCC
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
39 11 0.19
40 42 0.74
41 4 0.07
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (40 bp):
TAAAAAACGCCACTAAAAGTCGAGCATTAGCAACGCTTTT
Found at i:29826226 original size:41 final size:41
Alignment explanation
Indices: 29826181--29826286 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 41
29826171 CATTAGCAGT
*
29826181 ATTTTTGGAA-AAGCGCCGCTAATGCTCGGGACTTTAACGGC
1 ATTTTT-GAAGAAGCGCCGCTAATACTCGGGACTTTAACGGC
* * *
29826222 ATTTTTGAAGAAGCGCCGCTAATATTCGGGGCTTTAGCGGC
1 ATTTTTGAAGAAGCGCCGCTAATACTCGGGACTTTAACGGC
* * *
29826263 GTTTTTAAAGAAGCGCCTCTAATA
1 ATTTTTGAAGAAGCGCCGCTAATA
29826287 GTCTATTTTT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 3 0.05
41 54 0.95
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (41 bp):
ATTTTTGAAGAAGCGCCGCTAATACTCGGGACTTTAACGGC
Found at i:29829678 original size:23 final size:23
Alignment explanation
Indices: 29829626--29830037 Score: 242
Period size: 23 Copynumber: 18.0 Consensus size: 23
29829616 ATGGTGGATT
* * *
29829626 TGTAAATTTAAGTGTTTAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
29829649 TGTAAATTGAAGTGTTTAAGTGC
1 TGTAAATTGAAGTGTTTAAGTGC
* * *
29829672 TGCAAATTCAAGTATTT-AGTTGC
1 TGTAAATTGAAGTGTTTAAG-TGC
* *
29829695 TGAAAATTG-AGATGTTTTA-TCGC
1 TGTAAATTGAAG-TGTTTAAGT-GC
* * * * *
29829718 TAT-AATTGAGGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* * *
29829740 TGTTAATTGATA-TGTTAAATTGC
1 TGTAAATTGA-AGTGTTTAAGTGC
*
29829763 TGCAAATTGAAGTGTTTAAGTGC
1 TGTAAATTGAAGTGTTTAAGTGC
* *
29829786 TGCAAATTGAAGTGTTT-AGTTTC
1 TGTAAATTGAAGTGTTTAAG-TGC
**
29829809 TAG-AAATTG-AGATGTTT-TCTCGC
1 T-GTAAATTGAAG-TGTTTAAGT-GC
** * * *
29829832 TGT-AATTGATTTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
*
29829854 TGTTAATTGATA-TGTTTAAGTGC
1 TGTAAATTGA-AGTGTTTAAGTGC
* * *
29829877 TGCAAATTTAAGTGTTTAAATGC
1 TGTAAATTGAAGTGTTTAAGTGC
29829900 TGTAAATTGAAGTGTTTAAGTGC
1 TGTAAATTGAAGTGTTTAAGTGC
* *
29829923 TGCAAATTGAAGTGTTCT-A-TCGT
1 TGTAAATTGAAGTGTT-TAAGT-GC
* * * *
29829946 TGT-AATTGATGTGTATAAATGT
1 TGTAAATTGAAGTGTTTAAGTGC
* *
29829968 TGTTAATTGATA-TGTTAAAGTGC
1 TGTAAATTGA-AGTGTTTAAGTGC
*
29829991 TGTAAATTGAAGTGTTTAAATGC
1 TGTAAATTGAAGTGTTTAAGTGC
* *
29830014 TGTAAATTAAAGTGTTAAAGTGC
1 TGTAAATTGAAGTGTTTAAGTGC
29830037 T
1 T
29830038 ACTTTCCATT
Statistics
Matches: 301, Mismatches: 62, Indels: 52
0.73 0.15 0.13
Matches are distributed among these distances:
21 1 0.00
22 57 0.19
23 240 0.80
24 3 0.01
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (23 bp):
TGTAAATTGAAGTGTTTAAGTGC
Found at i:29829852 original size:114 final size:114
Alignment explanation
Indices: 29829652--29830029 Score: 537
Period size: 114 Copynumber: 3.3 Consensus size: 114
29829642 TAAATGTTGT
* * *
29829652 AAATTGAAGTGTTTAAGTGCTGCAAATTCAAGTATTTAGTTGCTGAAAATTGAGATGTTTTATCG
1 AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAGTTGCTGAAAATTGAGATGTTTTATCG
* * *
29829717 CTATAATTGAGGTGTATAAATGTTGTTAATTGATATGTTAAATTGCTGC
66 CTGTAATTGATGTGTATAAATGTTGTTAATTGATATGTTAAAGTGCTGC
* * *
29829766 AAATTGAAGTGTTTAAGTGCTGCAAATTGAAGTGTTTAGTTTCT-AGAAATTGAGATGTTTTCTC
1 AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAGTTGCTGA-AAATTGAGATGTTTTATC
* *
29829830 GCTGTAATTGATTTGTATAAATGTTGTTAATTGATATGTTTAAGTGCTGC
65 GCTGTAATTGATGTGTATAAATGTTGTTAATTGATATGTTAAAGTGCTGC
* * * *
29829880 AAATTTAAGTGTTTAAATGCTGTAAATTGAAGTGTTTAAG-TGCTGCAAATTGA-AGTGTTCTAT
1 AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTT-AGTTGCTGAAAATTGAGA-TGTTTTAT
* *
29829943 CGTTGTAATTGATGTGTATAAATGTTGTTAATTGATATGTTAAAGTGCTGT
64 CGCTGTAATTGATGTGTATAAATGTTGTTAATTGATATGTTAAAGTGCTGC
* *
29829994 AAATTGAAGTGTTTAAATGCTGTAAATTAAAGTGTT
1 AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTT
29830030 AAAGTGCTAC
Statistics
Matches: 238, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
113 2 0.01
114 234 0.98
115 2 0.01
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (114 bp):
AAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAGTTGCTGAAAATTGAGATGTTTTATCG
CTGTAATTGATGTGTATAAATGTTGTTAATTGATATGTTAAAGTGCTGC
Found at i:29829952 original size:91 final size:92
Alignment explanation
Indices: 29829852--29830029 Score: 227
Period size: 91 Copynumber: 1.9 Consensus size: 92
29829842 TTGTATAAAT
* * *
29829852 GTTGTTAATTGATATGTTTAAGTGCTGCAAATTTA-AGTGTTTAAA-TGCTGTAAATTGAAGTGT
1 GTTGTTAATTGATATGTATAAATGCTGCAAATTGATA-TG-TTAAAGTGCTGTAAATTGAAGTGT
* *
29829915 TTAAGTGCTGCAAATTGAAGTGTTCTATC
64 TTAAATGCTGCAAATTAAAGTGTTCTATC
* * **
29829944 GTTG-TAATTGATGTGTATAAATGTTGTTAATTGATATGTTAAAGTGCTGTAAATTGAAGTGTTT
1 GTTGTTAATTGATATGTATAAATGCTGCAAATTGATATGTTAAAGTGCTGTAAATTGAAGTGTTT
*
29830008 AAATGCTGTAAATTAAAGTGTT
66 AAATGCTGCAAATTAAAGTGTT
29830030 AAAGTGCTAC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
90 5 0.07
91 64 0.86
92 5 0.07
ACGTcount: A:0.31, C:0.05, G:0.22, T:0.42
Consensus pattern (92 bp):
GTTGTTAATTGATATGTATAAATGCTGCAAATTGATATGTTAAAGTGCTGTAAATTGAAGTGTTT
AAATGCTGCAAATTAAAGTGTTCTATC
Found at i:29830946 original size:43 final size:43
Alignment explanation
Indices: 29830898--29831164 Score: 333
Period size: 43 Copynumber: 6.2 Consensus size: 43
29830888 GACCTTTAGT
* *
29830898 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGGAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCACCGC
* * * *
29830941 TAAAGGT-ATTTTTCTTTAGCGGCGATTTTGGGGAAAGCGCCGC
1 TAAAGGTCA-TGTTCTTTAGCGGCGTTTTTGGGAAAAGCACCGC
* * * * *
29830984 TAAATGTCTTGTTCTTTAGTGACGTTTTTAGGAAAAGCACCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCACCGC
* *
29831027 TAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCACCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCACCGC
* * * *
29831070 TAAAGATTATGTTCTTTCA-CGACGTTTTTGGGGAAAGCACCGC
1 TAAAGGTCATGTTCTTT-AGCGGCGTTTTTGGGAAAAGCACCGC
29831113 TAAAGGTCATGTTCTTTAGCGGCGTTTGTT-GGAAAAGCACCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTT-TTGGGAAAAGCACCGC
29831156 TAAAGGTCA
1 TAAAGGTCA
29831165 CAACCTTTAG
Statistics
Matches: 193, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
42 2 0.01
43 188 0.97
44 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGAAAAGCACCGC
Found at i:29831128 original size:129 final size:129
Alignment explanation
Indices: 29830898--29831164 Score: 371
Period size: 129 Copynumber: 2.1 Consensus size: 129
29830888 GACCTTTAGT
* ** * *
29830898 TAAAGGTCATGTTCTTTAGCGGCGTTTTTGGGGAAAGCGCCGCTAAAGGTATTTTTCTTTAGCGG
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCACCGCTAAAGGTATTTTTCTTTAGCGA
* * * *
29830963 CGATTTTGGGGAAAGCGCCGCTAAATGTCTTGTTCTTTAGTGACGTTT-TTAGGAAAAGCACCGC
66 CGATTTTGGGGAAAGCACCGCTAAAGGTCATGTTCTTTAGCGACGTTTGTT-GGAAAAGCACCGC
29831027 TAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCACCGCTAAA-G-ATTATGTTCTTTCA-
1 TAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCACCGCTAAAGGTATT-T-TTCTTT-AG
* *
29831089 CGACGTTTTTGGGGAAAGCACCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTTGGAAAAGCACC
63 CGACGATTTTGGGGAAAGCACCGCTAAAGGTCATGTTCTTTAGCGACGTTTGTTGGAAAAGCACC
29831154 GC
128 GC
29831156 TAAAGGTCA
1 TAAAGGTCA
29831165 CAACCTTTAG
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
127 3 0.02
128 2 0.02
129 115 0.93
130 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (129 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTTTAGAAAAAGCACCGCTAAAGGTATTTTTCTTTAGCGA
CGATTTTGGGGAAAGCACCGCTAAAGGTCATGTTCTTTAGCGACGTTTGTTGGAAAAGCACCGC
Found at i:29831185 original size:43 final size:43
Alignment explanation
Indices: 29831103--29831185 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
29831093 GTTTTTGGGG
**** * *
29831103 AAAGCACCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTTGGA
1 AAAGCACCGCTAAAGGTCACAACCTTTAGCGACGCTTGTTGGA
*
29831146 AAAGCACCGCTAAAGGTCACAACCTTTAGTGACGCTTGTT
1 AAAGCACCGCTAAAGGTCACAACCTTTAGCGACGCTTGTT
29831186 TTTAAAAACG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (43 bp):
AAAGCACCGCTAAAGGTCACAACCTTTAGCGACGCTTGTTGGA
Found at i:29846359 original size:39 final size:40
Alignment explanation
Indices: 29846155--29846377 Score: 238
Period size: 40 Copynumber: 5.6 Consensus size: 40
29846145 TTGAATGCTG
* * * * * *
29846155 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
** * * *
29846195 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATA-CAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
29846234 TTCTGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
29846275 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
29846315 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
29846354 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
29846378 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 18, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
39 37 0.23
40 112 0.70
41 11 0.07
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:29846397 original size:79 final size:80
Alignment explanation
Indices: 29846238--29846412 Score: 212
Period size: 79 Copynumber: 2.2 Consensus size: 80
29846228 TACAAATTCT
* * * **
29846238 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
1 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAA
* *
29846303 CGAGTTATTAAATCC
66 CGAGTGACTAAATCC
* * *
29846318 GGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAA
1 GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAA
*
29846382 CGAG-GAGCTATATCC
66 CGAGTGA-CTAAATCC
*
29846397 -GGTTAAATCCCGAAGG
1 GGGTTAAGTCCCGAAGG
29846413 TACGTGATTT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 16 0.20
79 45 0.55
80 21 0.26
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (80 bp):
GGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAA
CGAGTGACTAAATCC
Found at i:29852682 original size:47 final size:47
Alignment explanation
Indices: 29852613--29852860 Score: 469
Period size: 47 Copynumber: 5.3 Consensus size: 47
29852603 GTGTGTATAC
* *
29852613 GTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
29852660 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29852707 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCTGATGTGATGAAT
1 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
29852754 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
29852801 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
29852848 GTGAAAGTGTATG
1 GTGAAAGTGTATG
29852861 CCGATGTGAT
Statistics
Matches: 197, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 197 1.00
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (47 bp):
GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:29852863 original size:27 final size:27
Alignment explanation
Indices: 29852833--29852935 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 27
29852823 AGGCCTAATG
*
29852833 GCCGATGTGATGAATGTGAAAGTGTAT
1 GCCGATGTGATGAATGCGAAAGTGTAT
29852860 GCCGATGTGATGAATGCGAAAGTGTAT
1 GCCGATGTGATGAATGCGAAAGTGTAT
**** * **
29852887 ATATATGTGAT-AAGGCCTAA-TG---
1 GCCGATGTGATGAATGCGAAAGTGTAT
29852909 GCCGATGTGATGAATGCGAAAGTGTAT
1 GCCGATGTGATGAATGCGAAAGTGTAT
29852936 ATATTTGTGA
Statistics
Matches: 56, Mismatches: 15, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
22 7 0.12
23 6 0.11
24 2 0.04
25 2 0.04
26 6 0.11
27 33 0.59
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (27 bp):
GCCGATGTGATGAATGCGAAAGTGTAT
Found at i:29852915 original size:76 final size:74
Alignment explanation
Indices: 29852645--29852935 Score: 260
Period size: 76 Copynumber: 4.0 Consensus size: 74
29852635 AGGCCTAATG
* * *
29852645 GCCGATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCG
29852710 AAAGTGTAT
66 AAAGTGTAT
* * ** ** * * *** *** *
29852719 G--TATGTGAT-AAGGCCTAA-TGGCT-GATGTGATGAATGTGAAAGTGTATGTATGTGAT-AAG
1 GCCGATGTGATGAATGCGAAAGTGTATATATGTGAT-AAGGCCTAA-TGGCCG-ATGTGATGAAT
**
29852778 GCCTAA-TG---
63 GCGAAAGTGTAT
* * *
29852786 GCCGATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCG
29852851 AAAGTGTAT
66 AAAGTGTAT
29852860 GCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGCGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
29852925 CGAAAGTGTAT
64 CGAAAGTGTAT
29852936 ATATTTGTGA
Statistics
Matches: 161, Mismatches: 41, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
67 1 0.01
69 21 0.13
70 23 0.14
71 23 0.14
72 21 0.13
74 24 0.15
76 48 0.30
ACGTcount: A:0.30, C:0.09, G:0.32, T:0.30
Consensus pattern (74 bp):
GCCGATGTGATGAATGCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCG
AAAGTGTAT
Found at i:29853004 original size:47 final size:47
Alignment explanation
Indices: 29852860--29853233 Score: 658
Period size: 47 Copynumber: 7.8 Consensus size: 47
29852850 GAAAGTGTAT
*
29852860 GCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
*
29852909 GCCGATGTGATGAATGCGAAAGTGTATATATTTGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATA--TGTGATAAGGCCTAATG
29852958 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
29853005 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
29853052 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
29853099 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG
*
29853148 GCCGATGTGATGAATGTGAAAGTGTAAATATGTGATAAGGCCTAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
*
29853195 GCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
29853234 TCCCGAAGGG
Statistics
Matches: 317, Mismatches: 4, Indels: 10
0.96 0.01 0.03
Matches are distributed among these distances:
47 200 0.63
49 117 0.37
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
Found at i:29853026 original size:96 final size:95
Alignment explanation
Indices: 29852860--29853233 Score: 662
Period size: 96 Copynumber: 3.9 Consensus size: 95
29852850 GAAAGTGTAT
*
29852860 GCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
29852925 CGAAAGTGTATATATTTGTGATAAGGCCTAATG
64 TGAAAGTGTATATA-TTGTGATAAGGCCTAATG
29852958 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
29853023 AAAGTGTATATA-TGTGATAAGGCCTAATG
66 AAAGTGTATATATTGTGATAAGGCCTAATG
29853052 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
29853117 AAAGTGTATATATATGTGATAAGGCCTAATG
66 AAAGTGTATATAT-TGTGATAAGGCCTAATG
*
29853148 GCCGATGTGATGAATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
29853213 AAAGTGTATA-AATGTGATAAG
66 AAAGTGTATATATTGTGATAAG
29853234 TCCCGAAGGG
Statistics
Matches: 270, Mismatches: 4, Indels: 8
0.96 0.01 0.03
Matches are distributed among these distances:
94 103 0.38
95 1 0.00
96 143 0.53
98 23 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (95 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATTGTGATAAGGCCTAATG
Found at i:29853064 original size:143 final size:142
Alignment explanation
Indices: 29852860--29853233 Score: 660
Period size: 143 Copynumber: 2.6 Consensus size: 142
29852850 GAAAGTGTAT
*
29852860 GCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
*
29852925 CGAAAGTGTATATATTTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATAT
64 TGAAAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATAT
29852989 GTGATAAGGCCTAATG
127 GTGATAAGGCCTAATG
29853005 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
29853070 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
66 AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTG
29853135 ATAAGGCCTAATG
130 ATAAGGCCTAATG
*
29853148 GCCGATGTGATGAATGTGAAAGTGTAAATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
29853213 AAAGTGTATAAATGTGATAAG
66 AAAGTGTATATATGTGATAAG
29853234 TCCCGAAGGG
Statistics
Matches: 223, Mismatches: 4, Indels: 6
0.96 0.02 0.03
Matches are distributed among these distances:
141 41 0.18
143 159 0.71
145 23 0.10
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (142 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGA
TAAGGCCTAATG
Found at i:29853136 original size:266 final size:262
Alignment explanation
Indices: 29852615--29853136 Score: 918
Period size: 266 Copynumber: 2.0 Consensus size: 262
29852605 GTGTATACGT
* *
29852615 GAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTGA
1 GAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGA
* *
29852680 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCTAATGGCTGAT
66 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
29852745 GTGATGAATGTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
131 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * *
29852810 TATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGCCGATGTGATGAAT
196 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACAGATGTGATGAAT
29852875 GC
261 GC
29852877 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATTT
1 GAAAGT-T-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATA--T
29852942 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
62 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
29853007 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
127 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
29853072 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
192 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACAGATGTGAT
29853137 AAGGCCTAAT
Statistics
Matches: 246, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
262 6 0.02
263 1 0.00
264 51 0.21
266 188 0.76
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (262 bp):
GAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATACAGATGTGATGAAT
GC
Found at i:29855305 original size:40 final size:39
Alignment explanation
Indices: 29855261--29855337 Score: 118
Period size: 39 Copynumber: 1.9 Consensus size: 39
29855251 AGTGACCATA
*
29855261 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAGAT-CGAAGGCATTGGTGCGAGTTACTAAT
* *
29855301 TCCGGGCTAAGCTCGAAGGCATTGGTGCGAGTTACTA
1 TCCGGACTAAGATCGAAGGCATTGGTGCGAGTTACTA
29855338 TAACCGGGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 23 0.68
40 11 0.32
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
TCCGGACTAAGATCGAAGGCATTGGTGCGAGTTACTAAT
Found at i:29855385 original size:40 final size:40
Alignment explanation
Indices: 29855221--29855535 Score: 266
Period size: 40 Copynumber: 7.9 Consensus size: 40
29855211 TCGAATGATG
* *
29855221 TCCGGGCTAAGTCCCGAAG-GC-TTTATGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * *
29855261 TCCGGACTAAGAT-CCGAAG-GCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* ** * *
29855300 TTCCGGGCTAAG-CTCGAAG-GCATTGGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
29855340 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
29855380 TCCGGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* **
29855420 TCCGGGCTAAGTTCCGAAGAGCATTTGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * *
29855460 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
29855500 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
29855536 CGTGTATTCG
Statistics
Matches: 232, Mismatches: 36, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.15
40 179 0.77
41 19 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:29858963 original size:47 final size:47
Alignment explanation
Indices: 29858894--29859587 Score: 1084
Period size: 47 Copynumber: 14.5 Consensus size: 47
29858884 GTGTGTATAC
* *
29858894 GTGAAAGTTTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
29858941 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29858988 GTGAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
29859035 GTAAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29859082 GCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
**
29859131 GCAAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29859180 GCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29859229 GCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29859278 GCGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29859327 GCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29859374 GCGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
29859421 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
29859470 GTGAAAGTGTATATATGTGATAAGGCATAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * * * *
29859517 GTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCAACGTGATTG-AT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGA-TGAAT
*
29859564 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
29859588 TCCCGAAGGG
Statistics
Matches: 623, Mismatches: 19, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
47 334 0.54
48 2 0.00
49 287 0.46
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:29858983 original size:22 final size:22
Alignment explanation
Indices: 29858955--29859077 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
29858945 AAGTGTATAT
29858955 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* *** ***
29858977 ATGTGATGAATGTGAAAGTGTATG
1 ATGTGAT-AAGGCCTAA-TGGCCG
29859001 TATGTGATAAGGCCTAATGGCCG
1 -ATGTGATAAGGCCTAATGGCCG
* *** ***
29859024 ATGTGATGAATGTAAAAGTGTATG
1 ATGTGAT-AAGGCCTAA-TGGCCG
29859048 TATGTGATAAGGCCTAATGGCCG
1 -ATGTGATAAGGCCTAATGGCCG
29859071 ATGTGAT
1 ATGTGAT
29859078 GAATGCGAAA
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 21 0.31
23 16 0.24
24 16 0.24
25 14 0.21
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:29859052 original size:25 final size:25
Alignment explanation
Indices: 29858977--29859055 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
29858967 CTAATGGCCG
*
29858977 ATGTGATGAATGTGAAAGTGTATGT
1 ATGTGATGAATGTAAAAGTGTATGT
* *** ***
29859002 ATGTGAT-AAGGCCTAA-TGGCCG-
1 ATGTGATGAATGTAAAAGTGTATGT
29859024 ATGTGATGAATGTAAAAGTGTATGT
1 ATGTGATGAATGTAAAAGTGTATGT
29859049 ATGTGAT
1 ATGTGAT
29859056 AAGGCCTAAT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.32, C:0.05, G:0.30, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTAAAAGTGTATGT
Found at i:29859242 original size:143 final size:142
Alignment explanation
Indices: 29858896--29859587 Score: 1079
Period size: 143 Copynumber: 4.8 Consensus size: 142
29858886 GTGTATACGT
* * *
29858896 GAAAGTTTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTG-ATATATGTGA
*
29858961 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATGTATGTGATAAGGCCTAATGGCCG
65 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
29859024 ATGTGATGAATGT
130 ATGTGATGAATGC
* *
29859037 AAAAGTGTATGTATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTG---ATATATGT
**
29859102 GATAAGGCCTAATGGCCGATGTGATGAATGCAAAAGTGTATATATATGTGATAAGGCCTAATGGC
63 GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
29859167 CGATGTGATGAATGC
128 CGATGTGATGAATGC
29859182 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATAT
1 GAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTG---ATATAT
*
29859247 GTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATATGTGATAAGGCCTAATG
61 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
29859312 GCCGATGTGATGAATGC
126 GCCGATGTGATGAATGC
29859329 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTG-ATATATGTGA
29859394 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
65 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
29859459 ATGTGATGAATGT
130 ATGTGATGAATGC
* *
29859472 GAAAGTGTATATATGTGATAAGGCATAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTG-ATATATGTGA
* * * * *
29859537 CAAGGCCGAGTGGCCAACGTGATTG-ATGTGAAAGTGTATA-A-ATGTGATAAG
65 TAAGGCCTAATGGCCGATGTGA-TGAATGTGAAAGTGTATATATATGTGATAAG
29859588 TCCCGAAGGG
Statistics
Matches: 523, Mismatches: 21, Indels: 14
0.94 0.04 0.03
Matches are distributed among these distances:
141 59 0.11
142 1 0.00
143 227 0.43
144 2 0.00
145 91 0.17
147 143 0.27
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (142 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGATATATGTGAT
AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
TGTGATGAATGC
Found at i:29859322 original size:22 final size:22
Alignment explanation
Indices: 29859294--29859416 Score: 66
Period size: 22 Copynumber: 5.3 Consensus size: 22
29859284 GTGTATATAT
29859294 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* ** ****
29859316 ATGTGATGAATGCGAAAGTGTATAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
29859341 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
* ** ****
29859363 ATGTGATGAATGCGAAAGTGTATAT
1 ATGTGAT-AAGGCCTAA-TG-GCCG
29859388 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGGCCG
29859410 ATGTGAT
1 ATGTGAT
29859417 GAATGTGAAA
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
22 21 0.31
23 16 0.24
24 16 0.24
25 14 0.21
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGGCCG
Found at i:29863178 original size:18 final size:18
Alignment explanation
Indices: 29863152--29863186 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
29863142 AACCCTAGCT
29863152 TTTTATTTAATCTGATTA
1 TTTTATTTAATCTGATTA
*
29863170 TTTTCTTTAATCTGATT
1 TTTTATTTAATCTGATT
29863187 TTTAATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.09, G:0.06, T:0.63
Consensus pattern (18 bp):
TTTTATTTAATCTGATTA
Found at i:29863196 original size:16 final size:17
Alignment explanation
Indices: 29863151--29863189 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 17
29863141 AAACCCTAGC
29863151 TTTTTATTTAATCTGAT
1 TTTTTATTTAATCTGAT
*
29863168 TATTTTCTTTAATCTGAT
1 T-TTTTATTTAATCTGAT
29863186 TTTT
1 TTTT
29863190 AATTAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 16 0.80
ACGTcount: A:0.21, C:0.08, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTTTATTTAATCTGAT
Found at i:29872347 original size:47 final size:47
Alignment explanation
Indices: 29872296--29872767 Score: 678
Period size: 49 Copynumber: 9.7 Consensus size: 47
29872286 TTAGGATTCT
* * *
29872296 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCC-----G
29872348 ATGTGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 A--TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
29872397 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
29872444 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
29872493 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
29872540 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
29872589 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
29872638 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * *
29872687 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
29872733 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
29872768 TCCCGAAGGG
Statistics
Matches: 399, Mismatches: 13, Indels: 21
0.92 0.03 0.05
Matches are distributed among these distances:
46 39 0.10
47 126 0.32
49 192 0.48
52 1 0.00
53 1 0.00
54 40 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:29872470 original size:49 final size:49
Alignment explanation
Indices: 29872351--29872767 Score: 685
Period size: 49 Copynumber: 8.7 Consensus size: 49
29872341 CGATGTGATG
29872351 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
29872398 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
29872445 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
29872494 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
*
29872541 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
*
29872590 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
29872639 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
* * * *
29872688 TGTGATGAATGTGAAAGTG--TATATATGTGA-CAGGCCGAGTGGCCAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
* *
29872734 CGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAG
29872768 TCCCGAAGGG
Statistics
Matches: 354, Mismatches: 9, Indels: 14
0.94 0.02 0.04
Matches are distributed among these distances:
46 35 0.10
47 127 0.36
48 2 0.01
49 190 0.54
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGA
Found at i:29872505 original size:96 final size:96
Alignment explanation
Indices: 29872351--29872767 Score: 709
Period size: 96 Copynumber: 4.4 Consensus size: 96
29872341 CGATGTGATG
29872351 TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
29872414 GTGTATATATGTGATAAGGCCTAATGGCCGA
66 GTGTATATATGTGATAAGGCCGAATGGCCGA
29872445 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
29872510 GTGTATATATGTGATAAGGCCTAATGGCCGA
66 GTGTATATATGTGATAAGGCCGAATGGCCGA
*
29872541 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
29872606 GTGTATATATATGTGATAAGGCCGAATGGCCGA
66 GTG--TATATATGTGATAAGGCCGAATGGCCGA
29872639 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * *
29872704 GTGTATATATGTGA-CAGGCCGAGTGGCCAA
66 GTGTATATATGTGATAAGGCCGAATGGCCGA
* *
29872734 CGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TGTGATGAATGTGAAAGTGTATATATATGTGATAAG
29872768 TCCCGAAGGG
Statistics
Matches: 311, Mismatches: 8, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
93 10 0.03
94 20 0.06
95 34 0.11
96 153 0.49
98 94 0.30
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
TGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCGAATGGCCGA
Found at i:29872942 original size:37 final size:37
Alignment explanation
Indices: 29872886--29872964 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
29872876 CCGAGCTCTA
* * * *
29872886 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
*
29872923 AAGACCCAATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
29872960 AAGAC
1 AAGAC
29872965 TTTGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:29879476 original size:33 final size:33
Alignment explanation
Indices: 29879427--29879492 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
29879417 TCCTCAAGGT
* *
29879427 TATTTCGACATCGTAAGCAAAGTTAGGATGGTG
1 TATTTCAACATCGTAAGAAAAGTTAGGATGGTG
* *
29879460 TATTTCAACATTGTAAGAAAATTTAGGATGGTG
1 TATTTCAACATCGTAAGAAAAGTTAGGATGGTG
29879493 GAAGCCTCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (33 bp):
TATTTCAACATCGTAAGAAAAGTTAGGATGGTG
Found at i:29890584 original size:23 final size:25
Alignment explanation
Indices: 29890535--29890584 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
29890525 TCTGACCCAA
**
29890535 AGCTCGTGTGAGCATACCGATTTAT
1 AGCTCGTGTGAGCATACCGATGCAT
*
29890560 AGCTTGTGTGAGCATA-C-ATGCAT
1 AGCTCGTGTGAGCATACCGATGCAT
29890583 AG
1 AG
29890585 GATTTGATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 6 0.27
24 1 0.05
25 15 0.68
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACCGATGCAT
Found at i:29892952 original size:11 final size:11
Alignment explanation
Indices: 29892920--29892978 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
29892910 AGAAAAGAGA
*
29892920 GAATGATGAAT
1 GAATGAGGAAT
29892931 G-ATGA-GAAT
1 GAATGAGGAAT
29892940 GAATGAGGAAT
1 GAATGAGGAAT
*
29892951 GATTGAGGGATGAT
1 GAATGA-GGA--AT
29892965 GAATGAAGGAAT
1 GAATG-AGGAAT
29892977 GA
1 GA
29892979 GAGGGTGCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
9 5 0.12
10 8 0.20
11 10 0.25
12 7 0.17
14 9 0.22
15 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.36, T:0.22
Consensus pattern (11 bp):
GAATGAGGAAT
Found at i:29893111 original size:15 final size:15
Alignment explanation
Indices: 29893082--29893111 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
29893072 GCTTAGTGGC
29893082 TTTTGACTTGATTTT
1 TTTTGACTTGATTTT
29893097 TTTTG-CTTGATTTT
1 TTTTGACTTGATTTT
29893111 T
1 T
29893112 AAGCAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.13, T:0.70
Consensus pattern (15 bp):
TTTTGACTTGATTTT
Found at i:29900761 original size:21 final size:20
Alignment explanation
Indices: 29900736--29900774 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
29900726 TCTTGTCGAA
*
29900736 AATTATATAATACTATAAAAT
1 AATTAAATAATACT-TAAAAT
*
29900757 AATTAAATTATACTTAAA
1 AATTAAATAATACTTAAA
29900775 TTATTAACAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTAAATAATACTTAAAAT
Found at i:29914351 original size:19 final size:19
Alignment explanation
Indices: 29914311--29914351 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
29914301 TTTAATTTTT
*
29914311 TTTATTTTTAATTCTTTGA
1 TTTATTTTTAATTCTTTAA
29914330 TTTATTTTTAATT-TTTCAA
1 TTTATTTTTAATTCTTT-AA
29914349 TTT
1 TTT
29914352 GTTTATGACC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 3 0.15
19 17 0.85
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTATTTTTAATTCTTTAA
Found at i:29916357 original size:16 final size:17
Alignment explanation
Indices: 29916330--29916365 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
29916320 AGAGAGTTGA
29916330 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
29916347 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
29916363 GAG
1 GAG
29916366 GGATAAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.53, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:29920446 original size:19 final size:20
Alignment explanation
Indices: 29920390--29920446 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 20
29920380 ACCCCCTTTA
*
29920390 TTAACATAA-AATTTAAAAC
1 TTAACAAAATAATTTAAAAC
29920409 TTAACAAAATAATTT-AAAC
1 TTAACAAAATAATTTAAAAC
*
29920428 -TAGA-AAAATATTTTAAAAC
1 TTA-ACAAAATAATTTAAAAC
29920447 CTAATTAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 11 0.33
19 17 0.52
20 5 0.15
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.32
Consensus pattern (20 bp):
TTAACAAAATAATTTAAAAC
Found at i:29924175 original size:42 final size:42
Alignment explanation
Indices: 29924113--29924212 Score: 173
Period size: 42 Copynumber: 2.3 Consensus size: 42
29924103 TAAGTCACAC
*
29924113 AAAGCTTTACTAGAGTAAGATTCATCAATGTTACAGGGTATAGT
1 AAAGC-TTCCTAG-GTAAGATTCATCAATGTTACAGGGTATAGT
29924157 AAAGCTTCCTAGGTAAGATTCATCAATGTTACAGGGTATAGT
1 AAAGCTTCCTAGGTAAGATTCATCAATGTTACAGGGTATAGT
29924199 AAAGCTTCCTAGGT
1 AAAGCTTCCTAGGT
29924213 CTTTCAATTT
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
42 44 0.80
43 6 0.11
44 5 0.09
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (42 bp):
AAAGCTTCCTAGGTAAGATTCATCAATGTTACAGGGTATAGT
Found at i:29932315 original size:102 final size:103
Alignment explanation
Indices: 29932079--29932343 Score: 410
Period size: 102 Copynumber: 2.6 Consensus size: 103
29932069 ATTGCATATA
* * *
29932079 AAGGGGTTGCTGTGCGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCCTATT
1 AAGGGGTTGCTGTGTGCTGATTCCCTGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCCTATC
*
29932144 TTAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
66 TGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* **
29932182 GAGGGGTTGCTAAGTGCTGATTCCCCT-ATTCATTGGTGGTTGCTAAGTGCTGATTCCACCGC-A
1 AAGGGGTTGCTGTGTGCTGATT-CCCTGATTCATTGGTGGTTGCTAAGTGCTGATTCCACC-CTA
29932245 TCTGAAATGTG-AAGGGGGTTGCTAAGTGCTGATTCCCCC
64 TCTGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
* *
29932284 AAGGGGTTGCTGTGTGCTGATTCCCTGATTCATTGGTGGTTGCTAAGTGCGGAATCCACC
1 AAGGGGTTGCTGTGTGCTGATTCCCTGATTCATTGGTGGTTGCTAAGTGCTGATTCCACC
29932344 AATAACGGTT
Statistics
Matches: 147, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
101 4 0.03
102 78 0.53
103 61 0.41
104 4 0.03
ACGTcount: A:0.18, C:0.21, G:0.29, T:0.31
Consensus pattern (103 bp):
AAGGGGTTGCTGTGTGCTGATTCCCTGATTCATTGGTGGTTGCTAAGTGCTGATTCCACCCTATC
TGAAATGTGAAAGGGGGTTGCTAAGTGCTGATTCCCCC
Found at i:29938565 original size:27 final size:26
Alignment explanation
Indices: 29938535--29938591 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
29938525 TAAAACAGTA
* *
29938535 ATTTTAACCCCTAGGGGTATTTTGGTC
1 ATTTT-ACCCCTAGAGGTATTTCGGTC
* *
29938562 ATTTTACCCTTCGAGGTATTTCGGTC
1 ATTTTACCCCTAGAGGTATTTCGGTC
29938588 ATTT
1 ATTT
29938592 AACAACCTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.18, C:0.19, G:0.19, T:0.44
Consensus pattern (26 bp):
ATTTTACCCCTAGAGGTATTTCGGTC
Found at i:29946453 original size:40 final size:40
Alignment explanation
Indices: 29946277--29946499 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
29946267 TCCTCGTTCA
* * * * *
29946277 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
29946316 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
29946356 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
29946396 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
29946436 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
29946476 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
29946500 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:29953718 original size:40 final size:40
Alignment explanation
Indices: 29953542--29953764 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
29953532 TCCTCGTTCA
* * * * *
29953542 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
29953581 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
29953621 ACTGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
29953661 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
29953701 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
29953741 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
29953765 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 37 0.23
40 113 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:29976291 original size:51 final size:50
Alignment explanation
Indices: 29976172--29976356 Score: 169
Period size: 51 Copynumber: 3.7 Consensus size: 50
29976162 AAAGTGATGG
* * * * *
29976172 TCACATGTGTAGTACTATGTACAGGCTACTACGTGTACTAGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGACAGT-AT-GA
* * * *
29976222 TCGCACGTGTAGTACTATGTGCAGGCAACTATGCGTACCAGATAGCT-TCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGACAG-TAT-GA
* * * * * *
29976273 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGACAGTGATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGACAGT-ATGA
29976324 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
29976357 TGAACCGGTA
Statistics
Matches: 109, Mismatches: 21, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
50 36 0.33
51 71 0.65
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGACAGTATGA
Found at i:29976305 original size:101 final size:102
Alignment explanation
Indices: 29976172--29976356 Score: 277
Period size: 101 Copynumber: 1.8 Consensus size: 102
29976162 AAAGTGATGG
*
29976172 TCACATGTGTAGTACTATGTACAGGCTACTACGTGTA-CTAGA-A-TGATAGGTCGCACGTGTAG
1 TCACATGTGTAGTACTATGTACAGGCTACTACGTGTATC-AGACAGTGAT-GGTCACACGTGTAG
29976234 TACTATGTGCAGGCAACTATGCGTACCAGATAGCTTCGA
64 TACTATGTGCAGGCAACTATGCGTACCAGATAGCTTCGA
* * * *
29976273 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGACAGTGATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTACAGGCTACTACGTGTATCAGACAGTGATGGTCACACGTGTAGTA
*
29976338 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCAACTATG
29976357 TGAACCGGTA
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
101 37 0.49
102 34 0.45
103 4 0.05
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTACAGGCTACTACGTGTATCAGACAGTGATGGTCACACGTGTAGTA
CTATGTGCAGGCAACTATGCGTACCAGATAGCTTCGA
Found at i:29976441 original size:46 final size:43
Alignment explanation
Indices: 29976360--29976458 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 43
29976350 TACTATGTGA
* *
29976360 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTACTATGTGCTGAAT-CC
* *
29976403 ACCGGATATCATTGATTACAAAGGGTGGTTACTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTACTATGTGCTGAATCC
29976449 ACCGTGTATC
1 ACCG-GTATC
29976459 TGTTATTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 2 0.04
46 26 0.55
47 3 0.06
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTACTATGTGCTGAATCC
Found at i:29976603 original size:16 final size:16
Alignment explanation
Indices: 29976582--29976613 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
29976572 TGATTGAAAG
*
29976582 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
29976598 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
29976614 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:29981034 original size:39 final size:40
Alignment explanation
Indices: 29980957--29981103 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
29980947 TAGCTCCTCG
* * *
29980957 TTCAAGTGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTCAA-TGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
* *
29980997 TTCAATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCG
1 TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** * * * *
29981036 CACGAATGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCG
1 TTC-AATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
** *
29981076 CACAAAGGCCTTCGGGACTTAACCCGGA
1 TTC-AATGCCTTCGGGACTTAACCCGGA
29981104 ATTAATAACT
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTCAATGCCTTCGGGACTTAACCCGGATTATAGAAACTCA
Found at i:29981114 original size:80 final size:80
Alignment explanation
Indices: 29981003--29981183 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
29980993 CTCATTCAAT
* * *
29981003 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
29981066 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
29981082 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
29981146 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
29981163 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
29981184 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:29981143 original size:40 final size:40
Alignment explanation
Indices: 29981000--29981183 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
29980990 TAACTCATTC
* *
29981000 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
29981040 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
29981080 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
29981120 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
29981161 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
29981184 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:29987579 original size:26 final size:28
Alignment explanation
Indices: 29987499--29987595 Score: 126
Period size: 29 Copynumber: 3.5 Consensus size: 28
29987489 ATGAGAATTG
* * * *
29987499 GCACTAAGTGTGCGGGTTTAATTGTACA
1 GCACTAAGTGTGCGAGTTTGATTATATA
29987527 GCACTAAGTGGTGCGAGTTTGATTATATA
1 GCACTAAGT-GTGCGAGTTTGATTATATA
29987556 GCACT-AGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
29987582 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
29987596 GACTTAATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
26 16 0.25
27 15 0.24
28 12 0.19
29 20 0.32
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:29987606 original size:27 final size:26
Alignment explanation
Indices: 29987526--29987608 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 26
29987516 TTAATTGTAC
* *
29987526 AGCACTAAGTGGTGCGAGTTTGATTATAT
1 AGCACT-AGT-GTGCGA-CTTGAATATAT
* *
29987555 AGCACTAGTGTGCGAGTTGATTATAT
1 AGCACTAGTGTGCGACTTGAATATAT
29987581 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACT-AGTGTGC-GACTTGAATATAT
29987608 A
1 A
29987609 TTTTTTTAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
26 16 0.33
27 20 0.41
28 7 0.14
29 6 0.12
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (26 bp):
AGCACTAGTGTGCGACTTGAATATAT
Found at i:30005707 original size:27 final size:28
Alignment explanation
Indices: 30005623--30005720 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
30005613 CATGAGATTG
* * * *
30005623 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
30005652 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
30005680 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
30005707 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
30005721 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:30005731 original size:27 final size:27
Alignment explanation
Indices: 30005651--30005733 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
30005641 TAAATTGTAC
* *
30005651 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
30005679 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
30005706 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
30005733 A
1 A
30005734 TTTTTTAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:30005734 original size:29 final size:27
Alignment explanation
Indices: 30005623--30005734 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
30005613 CATGAGATTG
** * *
30005623 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
30005652 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
30005680 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
30005707 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
30005735 TTTTTAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:30008049 original size:20 final size:20
Alignment explanation
Indices: 30007999--30008054 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
30007989 AGACGATGAA
30007999 CCATTCCATTTACTTACTTT
1 CCATTCCATTTACTTACTTT
*
30008019 CCACTT-AATTTACTTACTTT
1 CCA-TTCCATTTACTTACTTT
*
30008039 TCATTCCATTTACTTA
1 CCATTCCATTTACTTA
30008055 GTATAAGCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 2 0.06
20 27 0.87
21 2 0.06
ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50
Consensus pattern (20 bp):
CCATTCCATTTACTTACTTT
Found at i:30010811 original size:43 final size:43
Alignment explanation
Indices: 30010748--30010857 Score: 161
Period size: 43 Copynumber: 2.6 Consensus size: 43
30010738 ATCCATTATT
*
30010748 CGGTGGATTCAGCA-TATAGCAAACCCTTTCACAATAAAAGATA
1 CGGTGGAATCAGCACT-TAGCAAACCCTTTCACAATAAAAGATA
* * *
30010791 CGGTGGAATCAGCACTTAGCAACCCCTTTCACAATCAAATATA
1 CGGTGGAATCAGCACTTAGCAAACCCTTTCACAATAAAAGATA
30010834 CGGTGGAATCAGCACTTAG-AAACC
1 CGGTGGAATCAGCACTTAGCAAACC
30010858 ACCTTTAGAA
Statistics
Matches: 61, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
42 4 0.07
43 56 0.92
44 1 0.02
ACGTcount: A:0.36, C:0.25, G:0.17, T:0.22
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAAACCCTTTCACAATAAAAGATA
Found at i:30010870 original size:43 final size:43
Alignment explanation
Indices: 30010748--30010871 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
30010738 ATCCATTATT
* * *
30010748 CGGTGGATTCAGCA-TATAGCAAA-CCCTTTCACAATAAAAGATA
1 CGGTGGAATCAGCACT-TAG-AAACCCCTTTCACAATCAAATATA
*
30010791 CGGTGGAATCAGCACTTAGCAACCCCTTTCACAATCAAATATA
1 CGGTGGAATCAGCACTTAGAAACCCCTTTCACAATCAAATATA
*
30010834 CGGTGGAATCAGCACTTAGAAACCACCTTT-AGAATCAA
1 CGGTGGAATCAGCACTTAGAAACC-CCTTTCACAATCAA
30010872 TAATTCATGG
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
42 2 0.03
43 64 0.89
44 6 0.08
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGAAACCCCTTTCACAATCAAATATA
Found at i:30011300 original size:30 final size:30
Alignment explanation
Indices: 30011266--30011324 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
30011256 TCCTTAACTC
30011266 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * * *
30011296 AAACTTTTGCATATTTACACTTTTTCCCC
1 AAACTTTTGCAAAATTACAATTTTGCCCC
30011325 AAAGCTCGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:30014244 original size:41 final size:42
Alignment explanation
Indices: 30014165--30014245 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 42
30014155 CGTTTTCCCT
**
30014165 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
* *
30014207 ATGCCATAG-CCAGCTATGGTCTTACATAGTA-GCACATAT
1 ATGCCATAGTCCAACTATGGTCTTACACA-TATGCACATAT
30014246 CACACCAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 23 0.68
42 11 0.32
ACGTcount: A:0.31, C:0.22, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
Found at i:30017083 original size:795 final size:797
Alignment explanation
Indices: 30015282--30019757 Score: 7451
Period size: 797 Copynumber: 5.6 Consensus size: 797
30015272 GAATATTTAA
* * **
30015282 TGATCCGTATCATTAAATATTCTCATATCGTCAAATATTCCTTTTTAACTATTACAGTATATCAA
1 TGATCCGTATCATTACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
*
30015347 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCTCATACACCTA
66 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACACCTA
* * * *
30015412 ACAAAATTCGCCACAAAGATAGTACAAATTTTCTCTATTCGATATAAACCAAAACATATTATTTC
131 ACAAAATTAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCTGTTATTTC
*
30015477 TTTTCCAACAAACCTTACTAAATGTACACTTTATACTAACCCAAGTATTTAACCATTCACCCATG
196 TTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTATTTAACCATTCACCCATG
* *
30015542 ACATAAATGTATTTTATCCATTATTGA-TGAATGTAGATATGCTTCACAAATCATAATTCACCTC
261 ACATAAATGTATTTTATCCATTATT-ACCGAATATAGATATGCTTCACAAATCATAATTCACCTC
* *
30015606 ACATAGTAACCGAATTAATTTTCATCATTTGTCAAATAGATTACAAAATAATTTATATAACAAAA
325 ACATAGTAACCGAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAAAA
*
30015671 TATAGATATATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATATC
390 TATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATATC
30015736 AAAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAACCACTAAATGTAACACCCCAAACCC
455 AAAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAACCACTAAATGTAACACCCCAAACCC
* * *
30015801 GGCCTAAACATTAGGGCGGAATTTGGTGATGTCACACTGTAACACCTCTTACCCGTATCAACGCT
520 GGCCTAAACATTAGGGCGGAATCTGGTGATGTCACATTGTAACACCTCTTACCCATATCAACGCT
* * * *
30015866 GGAATAGGGTATGAGGCATTGCCAGAATAAATAAACTTATAGACATAGTAATCCGAGTTATAAAA
585 GGAATAGGGTACGAGGCATTACCAGAATAAATACACTTATAGACATATTAATCCGAGTTATAAAA
*
30015931 TTTTATCCAAATTAAAACTTTTCAATTGTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGCTAA
650 TTTTATCCAAATTAAAACTTTCCAATTGTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGCTAA
* * *
30015996 ATATACTCACAATCTTTCACTTCCTCATCGTATCAATTTATAAATTTTCACTTGCTTGTTGAATT
715 ATATACTCACAATCTTTCACTTCCTCGTCGTATGAATTTATAAATTTTCACTTACTTGTTGAATT
*
30016061 CGTCCTGAGTACCTGAAT
780 CGTCCTGAGTACCTAAAT
*
30016079 TGATCCTTATCATTACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
1 TGATCCGTATCATTACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
* *
30016144 TAATTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACAGCTA
66 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACACCTA
* *
30016209 ACAAAATAAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCTGGTATTTC
131 ACAAAATTAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCTGTTATTTC
*
30016274 TTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTGTTTAACCATTCACCCATG
196 TTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTATTTAACCATTCACCCATG
30016339 ACATAAATGTATTTTATCCATTATTACCGAATATAGATATGCTTCACAAATCATAATTCACCTCA
261 ACATAAATGTATTTTATCCATTATTACCGAATATAGATATGCTTCACAAATCATAATTCACCTCA
** * * *
30016404 CATAAAAACCGAATTAATTTTTATCATTTATCAAATAGATTAAAAAATAAGTTATATAACAAAGT
326 CATAGTAACCGAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAAAAT
*
30016469 ATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCATATATCA
391 ATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATATCA
* *
30016534 AAGACAAATGTTCGTGACATTTCCATCACCTAAATCGAACCACTAAATGTAACACCCCAAA-CCG
456 AAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAACCACTAAATGTAACACCCCAAACCCG
* *
30016598 GCCTAAACATTAGGGCGGAATCTGGTGATGTCACATTGTAATACCTCTTACCCATATGAACGCTG
521 GCCTAAACATTAGGGCGGAATCTGGTGATGTCACATTGTAACACCTCTTACCCATATCAACGCTG
* * *
30016663 GAATAGGGTACGAGGCTTTACCAGAATAAATACACCTATAGACATATTAAACCGAGTTAT-AAAT
586 GAATAGGGTACGAGGCATTACCAGAATAAATACACTTATAGACATATTAATCCGAGTTATAAAAT
* * *
30016727 TTTATCCAAATTCAAACTTTCCAATTTTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGCTGAA
651 TTTATCCAAATTAAAACTTTCCAATTGTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGCTAAA
* * * *
30016792 TATAATCATAATCTTTCACTTCCTCGTCGTATGAATTTACAAATTTTCACTTACATGTTGAATTC
716 TATACTCACAATCTTTCACTTCCTCGTCGTATGAATTTATAAATTTTCACTTACTTGTTGAATTC
30016857 GTCCTGAGTACCTAAAT
781 GTCCTGAGTACCTAAAT
*
30016874 TGATCCGTATCATTACATATTCTTATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
1 TGATCCGTATCATTACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
*
30016939 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCTATACACCTA
66 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACACCTA
*
30017004 ACAAAATTACCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCTAG-TATTT
131 ACAAAATTAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCT-GTTATTT
* * *
30017068 CTTTTCCAACAAACCTTACTAAATGTACACTTTACACTAACCCAAGTGTTTAACCATTCACCCAT
195 CTTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTATTTAACCATTCACCCAT
* *
30017133 GACATAAATGTATTATATCCATTATTGCCGAATATAGATATGCTTCACAAATCATAATTCACCTC
260 GACATAAATGTATTTTATCCATTATTACCGAATATAGATATGCTTCACAAATCATAATTCACCTC
* *
30017198 ACATAGTCACCAAAAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAA
325 ACATAGTAACC--GAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAA
**
30017263 AATATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATTGTCACATA
388 AATATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATA
*
30017328 TCAAAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAACAACTAAATGTAACACCCCAAAC
453 TCAAAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAACCACTAAATGTAACACCCCAAAC
** *
30017393 CCGGCCTAAACATTAGGGCCAAATCTGGTAATGTCACATTGTAACACCTCTTACCCGA-ATCAAC
518 CCGGCCTAAACATTAGGGCGGAATCTGGTGATGTCACATTGTAACACCTCTTACCC-ATATCAAC
* * *
30017457 GCTAGACTAGGGTACAAGGCATTACCAGAATAAATACACTTATAGACATATTAATCCGAGTTATA
582 GCTGGAATAGGGTACGAGGCATTACCAGAATAAATACACTTATAGACATATTAATCCGAGTTATA
30017522 AAATTTTATCCAAATTAAAACTTTCCAATTGTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGC
647 AAATTTTATCCAAATTAAAACTTTCCAATTGTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGC
* *
30017587 TAAATATACTCACAATCTTTCACTTCCTCGTTGTATGAATTTATAAATTTTCACTTACTTGTTCA
712 TAAATATACTCACAATCTTTCACTTCCTCGTCGTATGAATTTATAAATTTTCACTTACTTGTTGA
*
30017652 ATTCGTCCTGAGTACCTTAAT
777 ATTCGTCCTGAGTACCTAAAT
*
30017673 TGATCCGTATCATAACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
1 TGATCCGTATCATTACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
* * *
30017738 TAGTTCACTATCTCGTAAGCTAATTGTCACATACATTCATTAACCATTCATCTCCCATACAGCTA
66 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACACCTA
* *
30017803 A-AAAATTTAGCCACAAAGATAATACAAATTTTCTCGGTTCGATATAAACCAAAACCTGTTATTT
131 ACAAAA-TTAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCTGTTATTT
*
30017867 CTTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTATTTAACCATTCACCCAC
195 CTTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTATTTAACCATTCACCCAT
*
30017932 GACATAAATGTATTTTATCCATTATTACCGAATATAGATATGCTTCACAAATCATAATTCACTTC
260 GACATAAATGTATTTTATCCATTATTACCGAATATAGATATGCTTCACAAATCATAATTCACCTC
** * * * * *
30017997 ACATAAAAACCAAATTATTTTTTATCATTTGTCAAATAGATTAAAAAATAAGTAATATAACAAAG
325 ACATAGTAACCGAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAAAA
30018062 TATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATATC
390 TATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATATC
* * * * *
30018127 AAAGACAAATGTTCGTGACATTTCCATCACCTAAACTGAACCATTAAATGTAACACCCCAAATCA
455 AAAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAACCACTAAATGTAACACCCCAAACCC
30018192 GGCCTAAACATTAGGGCGGAATCTGGTGATGTCACATTGTAACACCTCTTACCCATATCAACGCT
520 GGCCTAAACATTAGGGCGGAATCTGGTGATGTCACATTGTAACACCTCTTACCCATATCAACGCT
* *
30018257 AGAATAAGGTACGAGGCATTACCAGAATAAATACACTTATAGAC--ATTAATCCGAGTTATAAAA
585 GGAATAGGGTACGAGGCATTACCAGAATAAATACACTTATAGACATATTAATCCGAGTTATAAAA
* *
30018320 TTTTATCCAAATTAAAACTTTCAAATTGTTATTCTTGGGTCGTTAATTAGGG-TTACTTGGCTGA
650 TTTTATCCAAATTAAAACTTTCCAATTGTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGCTAA
* *
30018384 ATATAGTCACAATCTTTCACTTCCTCGTCGTATGAATTTACAAATTTTCACTTACTTGTTGAATT
715 ATATACTCACAATCTTTCACTTCCTCGTCGTATGAATTTATAAATTTTCACTTACTTGTTGAATT
*
30018449 TGTCCTGAGTACCTAAAT
780 CGTCCTGAGTACCTAAAT
* * * *
30018467 TGATCTGTATCATTACATATTCTCATATCATCAAATATTCCTTTTTAACTATTTTAGTATATCAA
1 TGATCCGTATCATTACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
30018532 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACACCTA
66 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACACCTA
*
30018597 ACAAAATTAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATGTAAACCAAAACCTGTTATTTC
131 ACAAAATTAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCTGTTATTTC
*
30018662 TTTTCCAACAAACCTTACTAAATGTACACTTTATACTAACCCAAGTATTTAACCATTCACCCATG
196 TTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTATTTAACCATTCACCCATG
* * *
30018727 ACATAAATGTATTTTATCCATTATTGA-CGAATGTAGATATGCTCCACAAATCATAATTCACCTT
261 ACATAAATGTATTTTATCCATTATT-ACCGAATATAGATATGCTTCACAAATCATAATTCACCTC
* *
30018791 AGATAGTAACCGAATTAACTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAAAA
325 ACATAGTAACCGAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAAAA
*
30018856 TATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATAATCACATATC
390 TATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATATC
* *
30018921 ATAGACAAATGTTCTTGACATTTCCATCACCTAAACTGAACCACTAAATGTAACACCCCAAACCC
455 AAAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAACCACTAAATGTAACACCCCAAACCC
* * * *
30018986 AGCCTAAACATTAGGGCCGAATCTTGTGATGTCACATTGTAACACCTCTTACCCGTATCAACGCT
520 GGCCTAAACATTAGGGCGGAATCTGGTGATGTCACATTGTAACACCTCTTACCCATATCAACGCT
* * *
30019051 GGAATAGAGTACGAGGCATTACCAGAATAAATACATTTATGGACATATTAATCCGAGTTATAAAA
585 GGAATAGGGTACGAGGCATTACCAGAATAAATACACTTATAGACATATTAATCCGAGTTATAAAA
* *
30019116 TTTTATCCAAATTAAAACTTTCCAATTCTTATTCTTGGTTCGTTAATTAGGGTTTACTTGGCTAA
650 TTTTATCCAAATTAAAACTTTCCAATTGTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGCTAA
* *
30019181 ATATACTCACAATCTTTCATTTCCTCATCGTATGAATTTATAAATTTTCACTTACTTGTTGAATT
715 ATATACTCACAATCTTTCACTTCCTCGTCGTATGAATTTATAAATTTTCACTTACTTGTTGAATT
* *
30019246 CGTCCTCAGTACCTGAAT
780 CGTCCTGAGTACCTAAAT
* * *
30019264 TGATCCGTATCATTACATATTCTCATATCGTCAGATTTTCCATTTTAACTATTTTAGTATATCAA
1 TGATCCGTATCATTACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
** * * *
30019329 TAGTTCACTATCTGGTAAGCTAATTCACACATACATACATTACCCATTCATCTCCTATACAGCTA
66 TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACACCTA
* * *
30019394 ACAAAATTAGCCACAAAGATATTACAAATTTTCTCTATTCGATATAAACCAAAACCTGATATTTC
131 ACAAAATTAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCTGTTATTTC
* * * *
30019459 TTTTCCAACAAACCTTACTAAATATAAAATTTTTACTAACCCAAGTGTTTAACCATTCACCCATG
196 TTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTATTTAACCATTCACCCATG
* *
30019524 ACATAAATGTATTTTATCCATTATTGCCGAATATTGATATGCTTCACAAATCATAATTCACCTCA
261 ACATAAATGTATTTTATCCATTATTACCGAATATAGATATGCTTCACAAATCATAATTCACCTCA
* * *
30019589 TATAGTAACCGAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAGGTTACATAACAAAAT
326 CATAGTAACCGAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAAAAT
** *
30019654 ATAGATACATTTTAAACCACACAATTAAACATTTTTTCTTGGCATTACATGATCATCACATATCA
391 ATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATATCA
30019719 AAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAA
456 AAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAA
30019758 TTAATCAATG
Statistics
Matches: 3434, Mismatches: 229, Indels: 32
0.93 0.06 0.01
Matches are distributed among these distances:
794 668 0.19
795 533 0.16
796 187 0.05
797 1475 0.43
798 120 0.03
799 451 0.13
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.34
Consensus pattern (797 bp):
TGATCCGTATCATTACATATTCTCATATCGTCAAATTTTCCTTTTTAACTATTGTAGTATATCAA
TAGTTCACTATCTGGTAAGCTAATTGTCACATACATACATTAACCATTCATCTCCCATACACCTA
ACAAAATTAGCCACAAAGATAGTACAAATTTTCTCTGTTCGATATAAACCAAAACCTGTTATTTC
TTTTCCAACAAACCTTACTAAATATACACTTTATACTAACCCAAGTATTTAACCATTCACCCATG
ACATAAATGTATTTTATCCATTATTACCGAATATAGATATGCTTCACAAATCATAATTCACCTCA
CATAGTAACCGAATTAATTTTTATCATTTGTCAAATAGATTACAAAATAAGTTATATAACAAAAT
ATAGATACATTTTAAACCACACAATTAAACAAATTTTCATGGCATTACATGATCATCACATATCA
AAGACAAATGTTCTTGACATTTCCATCACCTAAACCGAACCACTAAATGTAACACCCCAAACCCG
GCCTAAACATTAGGGCGGAATCTGGTGATGTCACATTGTAACACCTCTTACCCATATCAACGCTG
GAATAGGGTACGAGGCATTACCAGAATAAATACACTTATAGACATATTAATCCGAGTTATAAAAT
TTTATCCAAATTAAAACTTTCCAATTGTTATTCTTGGGTCGTTAATTAGGGTTTACTTGGCTAAA
TATACTCACAATCTTTCACTTCCTCGTCGTATGAATTTATAAATTTTCACTTACTTGTTGAATTC
GTCCTGAGTACCTAAAT
Found at i:30036540 original size:40 final size:40
Alignment explanation
Indices: 30036496--30036721 Score: 243
Period size: 40 Copynumber: 5.7 Consensus size: 40
30036486 GCTCCTCGTT
*
30036496 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAATTCGCA
*
30036536 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTT-GCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAA-TTCGCA
*
30036576 CAAATGCCTTCGGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAT-TCGCA
*
30036616 CAAATGCCTTCGGATCTTAGTCCGGATTTAGT-ATCTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAT-TCGCA
* * * * *
30036656 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGT-AATTCGCA
30036697 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
30036722 CATCATTCAA
Statistics
Matches: 169, Mismatches: 9, Indels: 16
0.87 0.05 0.08
Matches are distributed among these distances:
38 1 0.01
39 5 0.03
40 147 0.87
41 15 0.09
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAATTCGCA
Found at i:30036608 original size:80 final size:80
Alignment explanation
Indices: 30036496--30036721 Score: 282
Period size: 80 Copynumber: 2.8 Consensus size: 80
30036486 GCTCCTCGTT
* * *
30036496 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCC
*
30036559 GGATTTAGTAACTTGCA
64 GGATTTAGTAACTCGCA
*
30036576 CAAATGCCTTCGGATCTTAGTCCGGATTTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAGCCC
*
30036639 GGATTTAGTATCTCGCA
64 GGATTTAGTAACTCGCA
* * * *
30036656 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
30036720 GA
65 GA
30036722 CATCATTCAA
Statistics
Matches: 128, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
79 8 0.06
80 106 0.83
81 13 0.10
82 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (80 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATTTAGTAACTCGCA
Found at i:30036705 original size:120 final size:120
Alignment explanation
Indices: 30036496--30036721 Score: 284
Period size: 120 Copynumber: 1.9 Consensus size: 120
30036486 GCTCCTCGTT
30036496 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
30036561 ATTTAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
66 ATATAGTAACTTGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTATCTCGCA
* * **
30036616 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAAC
* *
30036677 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAACTT-GCACAAATGCCTTCGGGACTTAGCCCGGA
30036722 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
119 8 0.09
120 72 0.78
121 12 0.13
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
Found at i:30039005 original size:50 final size:50
Alignment explanation
Indices: 30038919--30039057 Score: 127
Period size: 50 Copynumber: 2.8 Consensus size: 50
30038909 TACTGCAAAT
* * * ** * * *
30038919 GCCATATCCCAGATATGGTCTTACATGA-GAGTTCTCATATAGGTGCCCAT
1 GCCATGTCCCAAACATGGTCTTACA-GAGGACCTCTCATATAGGTACCAAC
* * * * * *
30038969 GCTATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTACCAAC
1 GCCATGTCCCAAACATGGTCTTACAGAGGACCTCTCATATAGGTACCAAC
*
30039019 GCCATGTCCCAAACATGGTCTTACATAGGACCTCTCATA
1 GCCATGTCCCAAACATGGTCTTACAGAGGACCTCTCATA
30039058 AACTCAATAA
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
49 1 0.01
50 69 0.99
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACAGAGGACCTCTCATATAGGTACCAAC
Found at i:30044331 original size:20 final size:21
Alignment explanation
Indices: 30044306--30044344 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
30044296 GATTTTTGAA
30044306 AAAAAAATCGAAAA-AAAATC
1 AAAAAAATCGAAAAGAAAATC
*
30044326 AAAAAAATTGAAAAGAAAA
1 AAAAAAATCGAAAAGAAAA
30044345 AAAAATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.77, C:0.05, G:0.08, T:0.10
Consensus pattern (21 bp):
AAAAAAATCGAAAAGAAAATC
Found at i:30044339 original size:16 final size:15
Alignment explanation
Indices: 30044326--30044366 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 15
30044316 AAAAAAAATC
30044326 AAAAAAATTGAAAAGAA
1 AAAAAAATTG-AAA-AA
*
30044343 AAAAAAATTGAAAAG
1 AAAAAAATTGAAAAA
30044358 AAAAAAATT
1 AAAAAAATT
30044367 TTTATACGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.43
16 3 0.13
17 10 0.43
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.15
Consensus pattern (15 bp):
AAAAAAATTGAAAAA
Found at i:30044339 original size:17 final size:17
Alignment explanation
Indices: 30044303--30044364 Score: 79
Period size: 17 Copynumber: 3.5 Consensus size: 17
30044293 GTAGATTTTT
*
30044303 GAAAAAAAAATCGAAAAA
1 GAAAAAAAAATTG-AAAA
*
30044321 AAATCAAAAAAATTGAAAA
1 GAA--AAAAAAATTGAAAA
30044340 GAAAAAAAAATTGAAAA
1 GAAAAAAAAATTGAAAA
30044357 GAAAAAAA
1 GAAAAAAA
30044365 TTTTTATACG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
17 22 0.56
18 2 0.05
19 6 0.15
20 9 0.23
ACGTcount: A:0.77, C:0.03, G:0.10, T:0.10
Consensus pattern (17 bp):
GAAAAAAAAATTGAAAA
Found at i:30046651 original size:13 final size:14
Alignment explanation
Indices: 30046633--30046663 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
30046623 AATCGAACAA
30046633 AAAAAGAG-AAAAG
1 AAAAAGAGCAAAAG
30046646 AAAAAGAGCAAAAG
1 AAAAAGAGCAAAAG
30046660 AAAA
1 AAAA
30046664 TGAGTGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.77, C:0.03, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAAAGAGCAAAAG
Found at i:30058874 original size:78 final size:80
Alignment explanation
Indices: 30058732--30058915 Score: 234
Period size: 78 Copynumber: 2.3 Consensus size: 80
30058722 TTGAATGATG
*
30058732 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
30058796 TGTGCGAGATACTA-A
65 TGTGCGAGATACTATA
* * **
30058811 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-AGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
30058873 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
30058890 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
30058916 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
77 1 0.01
78 49 0.53
79 24 0.26
80 18 0.20
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:30058929 original size:40 final size:40
Alignment explanation
Indices: 30058733--30058915 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
30058723 TGAATGATGT
* * * *
30058733 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
30058773 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
30058813 CCGGGCTAAG-CCCGAAGGCATTTGTGC-AGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
30058850 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
30058891 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
30058916 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
38 17 0.14
39 34 0.27
40 63 0.51
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:30067008 original size:40 final size:39
Alignment explanation
Indices: 30066924--30067108 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
30066914 TTGAATGATG
* * * *
30066924 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
30066964 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
30067004 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
30067043 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
30067084 -CCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
30067109 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30067060 original size:79 final size:81
Alignment explanation
Indices: 30066924--30067108 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
30066914 TTGAATGATG
*
30066924 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
30066988 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
30067003 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
30067065 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* * *
30067083 ACCAGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
30067109 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:30067130 original size:79 final size:79
Alignment explanation
Indices: 30066977--30067141 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
30066967 GGACTAAGAT
* * **
30066977 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
30067042 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
30067056 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
30067119 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
30067135 CCGAAGG
1 CCGAAGG
30067142 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:30070310 original size:20 final size:20
Alignment explanation
Indices: 30070275--30070323 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
30070265 ATCATGGTCT
*
30070275 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
30070294 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
30070314 TTGCTTACTT
1 TTGCTTACTT
30070324 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:30070650 original size:50 final size:50
Alignment explanation
Indices: 30070577--30070705 Score: 141
Period size: 50 Copynumber: 2.6 Consensus size: 50
30070567 TCCTGTACTA
* * * * **
30070577 CCAATGTCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGTCATGTCCCAGACATGGTCTTACAGGGGACATCTCATATCGGTG
* * *
30070627 CCCATGTCATGTCCCAGACATGGTCTTACGGGGGACATCTCATCTCGGTG
1 CCAATGTCATGTCCCAGACATGGTCTTACAGGGGACATCTCATATCGGTG
* * * *
30070677 CCAACGCCATGTCTCAGGCATGGTCTTAC
1 CCAATGTCATGTCCCAGACATGGTCTTAC
30070706 GTAGGACCTC
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 65 1.00
ACGTcount: A:0.21, C:0.27, G:0.23, T:0.29
Consensus pattern (50 bp):
CCAATGTCATGTCCCAGACATGGTCTTACAGGGGACATCTCATATCGGTG
Found at i:30070706 original size:50 final size:50
Alignment explanation
Indices: 30070596--30070720 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 50
30070586 TATCCTAGAT
** ** * * *
30070596 ATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGTCATGTCCCAGAC
1 ATGGTCTTACGGGGGACATCTCATATCGGTGCCAACGCCATGTCCCAGAC
* * *
30070646 ATGGTCTTACGGGGGACATCTCATCTCGGTGCCAACGCCATGTCTCAGGC
1 ATGGTCTTACGGGGGACATCTCATATCGGTGCCAACGCCATGTCCCAGAC
** *
30070696 ATGGTCTTACGTAGGACCTCTCATA
1 ATGGTCTTACGGGGGACATCTCATA
30070721 ACCTCAATAA
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 61 1.00
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACGGGGGACATCTCATATCGGTGCCAACGCCATGTCCCAGAC
Found at i:30071495 original size:10 final size:11
Alignment explanation
Indices: 30071472--30071496 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
30071462 CGAGGACTTC
30071472 AAAAACATTAA
1 AAAAACATTAA
30071483 AAAAACATTAA
1 AAAAACATTAA
30071494 AAA
1 AAA
30071497 CAGGGCTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAACATTAA
Found at i:30082894 original size:50 final size:50
Alignment explanation
Indices: 30082767--30083064 Score: 278
Period size: 50 Copynumber: 5.9 Consensus size: 50
30082757 TGATAATAAC
* * ** * *
30082767 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGCATGTTTCATGT--
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * * * **
30082815 ACTACCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCG
1 A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * * *
30082866 ATGCCCATACCATGTCCCAGACATGGTCTTACGA-GAGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATATCG
* * ** *
30082916 GTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTGTCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * *
30082966 GTGCCAACGCCATGTCCCAGACATGGTCTTACATTGGACCTCTCATGATCTCAAGG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---G
*
30083022 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
30083065 TTACCCAAAT
Statistics
Matches: 204, Mismatches: 35, Indels: 14
0.81 0.14 0.06
Matches are distributed among these distances:
48 1 0.00
49 38 0.19
50 121 0.59
51 2 0.01
53 2 0.01
56 40 0.20
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
Found at i:30084396 original size:15 final size:15
Alignment explanation
Indices: 30084376--30084408 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
30084366 AAATGAGTTA
30084376 GAAAAAGA-GGTAAGT
1 GAAAAAGATGG-AAGT
30084391 GAAAAAGATGGAAGT
1 GAAAAAGATGGAAGT
30084406 GAA
1 GAA
30084409 CAAGCAAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.55, C:0.00, G:0.33, T:0.12
Consensus pattern (15 bp):
GAAAAAGATGGAAGT
Found at i:30086379 original size:23 final size:24
Alignment explanation
Indices: 30086353--30086405 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 24
30086343 TAATACATGT
30086353 TTTTAATATGTC-T-AGCTACAACA
1 TTTTAATATGTCTTAAGCT-CAACA
* * *
30086376 TTTTGATGTGTCTTAAGCTGAACA
1 TTTTAATATGTCTTAAGCTCAACA
30086400 TTTTAA
1 TTTTAA
30086406 GTGCAGATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 10 0.42
24 10 0.42
25 4 0.17
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (24 bp):
TTTTAATATGTCTTAAGCTCAACA
Found at i:30096193 original size:59 final size:59
Alignment explanation
Indices: 30096101--30096227 Score: 211
Period size: 59 Copynumber: 2.2 Consensus size: 59
30096091 TGTCCTAGAA
*
30096101 AAATTCATGAGTGATTCAAGAAAAAAAATTCTAACAATTGAAAATATCAGATAAGTCTT
1 AAATTCATGAGTGATTCAAGAAAAAAAATTCTAACAATTGAAAAGATCAGATAAGTCTT
* *
30096160 AAATTCATGAGTGATTCAAGAGAAAAAATTCTAACAGTTGAAAAGATCAGATAAGTCTT
1 AAATTCATGAGTGATTCAAGAAAAAAAATTCTAACAATTGAAAAGATCAGATAAGTCTT
*
30096219 ACATT-ATGA
1 AAATTCATGA
30096228 ACGAACCCTC
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
58 4 0.06
59 60 0.94
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.28
Consensus pattern (59 bp):
AAATTCATGAGTGATTCAAGAAAAAAAATTCTAACAATTGAAAAGATCAGATAAGTCTT
Found at i:30097035 original size:21 final size:21
Alignment explanation
Indices: 30097011--30097051 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
30097001 AGATTGATTA
* *
30097011 TATAGATATATCCAACTTTTC
1 TATAGAGATATACAACTTTTC
*
30097032 TATAGAGATATAGAACTTTT
1 TATAGAGATATACAACTTTT
30097052 ATCAGTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (21 bp):
TATAGAGATATACAACTTTTC
Found at i:30097083 original size:21 final size:21
Alignment explanation
Indices: 30097059--30097098 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
30097049 TTTATCAGTA
*
30097059 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
30097080 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
30097099 TTTAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:30097428 original size:20 final size:19
Alignment explanation
Indices: 30097382--30097419 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
30097372 AAAATATTAT
30097382 TTCTA-TTCTTTTTCTTTC
1 TTCTATTTCTTTTTCTTTC
30097400 TTCCTATTTCTTTTTCTTTC
1 TT-CTATTTCTTTTTCTTTC
30097420 CATTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.11
19 3 0.17
20 13 0.72
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (19 bp):
TTCTATTTCTTTTTCTTTC
Found at i:30097689 original size:11 final size:11
Alignment explanation
Indices: 30097673--30097697 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
30097663 GGGTCCATTT
30097673 ATATACAATAA
1 ATATACAATAA
30097684 ATATACAATAA
1 ATATACAATAA
30097695 ATA
1 ATA
30097698 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:30098396 original size:9 final size:9
Alignment explanation
Indices: 30098350--30098397 Score: 53
Period size: 11 Copynumber: 5.0 Consensus size: 9
30098340 CGTTCCTGCC
30098350 TTATATTTAT
1 TTAT-TTTAT
30098360 CTTATTTATAT
1 -TTATTT-TAT
30098371 TCTATTTTAT
1 T-TATTTTAT
30098381 TTA-TTTAT
1 TTATTTTAT
30098389 TTATTTTAT
1 TTATTTTAT
30098398 CCATCTTCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
8 8 0.24
9 7 0.21
10 7 0.21
11 12 0.35
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (9 bp):
TTATTTTAT
Found at i:30101312 original size:56 final size:56
Alignment explanation
Indices: 30101226--30101345 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
30101216 ACAAGGGATG
30101226 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
30101282 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
30101338 ATGGGCAA
1 ATGGGCAA
30101346 TAAACTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:30102611 original size:78 final size:80
Alignment explanation
Indices: 30102470--30102692 Score: 276
Period size: 78 Copynumber: 2.8 Consensus size: 80
30102460 TCGAATGATG
* * * * * *
30102470 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
30102533 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
30102550 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
*
30102613 -TGCGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
30102627 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
30102692 G
66 G
30102693 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
77 23 0.19
78 45 0.37
79 38 0.31
80 17 0.14
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:30102706 original size:40 final size:39
Alignment explanation
Indices: 30102471--30102692 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 39
30102461 CGAATGATGT
* * * *
30102471 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
30102511 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
30102551 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
30102589 TCGGGTTAAGTCCCGAAGGCATTT-TGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
30102627 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
30102668 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
30102693 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 15, Indels: 16
0.84 0.08 0.08
Matches are distributed among these distances:
38 22 0.14
39 60 0.38
40 67 0.42
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30102723 original size:79 final size:78
Alignment explanation
Indices: 30102523--30102725 Score: 234
Period size: 78 Copynumber: 2.6 Consensus size: 78
30102513 GGACTAAGAT
* * * *
30102523 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTGGTGCGAGTTACTA
1 CCGAAGGCATTT-TGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA
* *
30102587 AATCGGGTTAAGTC
65 AACCGGGCTAAGTC
* *
30102601 CCGAAGGCATTTTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
1 CCGAAGGCATTTTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA-
*
30102666 AACCGGGCTATGTC
65 AACCGGGCTAAGTC
* *
30102680 CCGAAGGCA-TTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTTG--CGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
30102726 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
77 19 0.18
78 42 0.39
79 36 0.33
80 11 0.10
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTAA
ACCGGGCTAAGTC
Found at i:30109252 original size:56 final size:56
Alignment explanation
Indices: 30109166--30109290 Score: 241
Period size: 56 Copynumber: 2.2 Consensus size: 56
30109156 ACAAGGGATG
30109166 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
30109222 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
30109278 ATGGGCAAAACAT
1 ATGGGCAAAACAT
30109291 ATGAACATGT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 68 1.00
ACGTcount: A:0.46, C:0.10, G:0.22, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:30110722 original size:40 final size:40
Alignment explanation
Indices: 30110484--30110708 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
30110474 TCGAATGATG
* * * *
30110484 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
30110524 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
30110564 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
30110603 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
30110643 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
30110684 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
30110709 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30110730 original size:119 final size:119
Alignment explanation
Indices: 30110484--30110741 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
30110474 TCGAATGATG
* *
30110484 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
30110549 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * * **
30110603 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
30110666 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
30110723 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
30110742 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:30114305 original size:19 final size:19
Alignment explanation
Indices: 30114276--30114324 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
30114266 TCTTCTGACC
30114276 AAAATAGAAAA-TAT-ATCAA
1 AAAATA-AAAAGTATAAT-AA
30114295 AAAACTAAAAAGTATAATAA
1 AAAA-TAAAAAGTATAATAA
30114315 AAAATAAAAA
1 AAAATAAAAA
30114325 ATAAAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
19 14 0.52
20 11 0.41
21 2 0.07
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.18
Consensus pattern (19 bp):
AAAATAAAAAGTATAATAA
Found at i:30114325 original size:20 final size:19
Alignment explanation
Indices: 30114276--30114327 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
30114266 TCTTCTGACC
*
30114276 AAAATAGAAAATATATCAA
1 AAAATAAAAAATATATCAA
*
30114295 AAAACTAAAAAGTATAAT-AA
1 AAAA-TAAAAAATAT-ATCAA
30114315 AAAATAAAAAATA
1 AAAATAAAAAATA
30114328 AAAATTTTAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 12 0.43
20 14 0.50
21 2 0.07
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (19 bp):
AAAATAAAAAATATATCAA
Found at i:30118255 original size:4 final size:4
Alignment explanation
Indices: 30118229--30118281 Score: 70
Period size: 4 Copynumber: 13.2 Consensus size: 4
30118219 TGTTTTCACT
* * * *
30118229 TCTC TCCC TCCC TCCC TCCC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
30118277 TCTC T
1 TCTC T
30118282 TTAAGTAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (4 bp):
TCTC
Found at i:30120488 original size:23 final size:23
Alignment explanation
Indices: 30120458--30120506 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
30120448 TTTCTTCCTA
30120458 TTTTTTTGATACAGTCTCATATT
1 TTTTTTTGATACAGTCTCATATT
* ***
30120481 TTTTTTTGTTATTTTCTCATATT
1 TTTTTTTGATACAGTCTCATATT
30120504 TTT
1 TTT
30120507 AATATTGCGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.16, C:0.10, G:0.06, T:0.67
Consensus pattern (23 bp):
TTTTTTTGATACAGTCTCATATT
Found at i:30120505 original size:21 final size:19
Alignment explanation
Indices: 30120423--30120506 Score: 53
Period size: 23 Copynumber: 4.1 Consensus size: 19
30120413 TTTCATGTTA
*
30120423 TTTGATATTT-TCATAATTT
1 TTTG-TATTTCTCATATTTT
*
30120442 TTTGTATTTCTTCCTATTTT
1 TTTGTATTTC-TCATATTTT
**
30120462 TTTGATACAGTCTCATATTTTTT
1 TTTG-TA-TTTCTCATA--TTTT
30120485 TTTGTTATTTTCTCATATTTT
1 TTTG-TA-TTTCTCATATTTT
30120506 T
1 T
30120507 AATATTGCGT
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
18 5 0.10
19 4 0.08
20 11 0.22
21 11 0.22
22 2 0.04
23 17 0.34
ACGTcount: A:0.18, C:0.11, G:0.06, T:0.65
Consensus pattern (19 bp):
TTTGTATTTCTCATATTTT
Found at i:30120654 original size:21 final size:20
Alignment explanation
Indices: 30120620--30120673 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
30120610 ACTTTCTCAT
*
30120620 TTTTTTG-TAC-TTCTTCCGA
1 TTTTTTGATACTTTCTT-AGA
*
30120639 TTTTTTGATACTTTCTTATA
1 TTTTTTGATACTTTCTTAGA
*
30120659 TTTTTTTATACTTTC
1 TTTTTTGATACTTTC
30120674 CCATGTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.23
20 18 0.60
21 5 0.17
ACGTcount: A:0.15, C:0.15, G:0.06, T:0.65
Consensus pattern (20 bp):
TTTTTTGATACTTTCTTAGA
Found at i:30120682 original size:20 final size:20
Alignment explanation
Indices: 30120638--30120685 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
30120628 ACTTCTTCCG
* **
30120638 ATTTTTTGATACTTTCTTAT
1 ATTTTTTTATACTTTCCCAT
30120658 ATTTTTTTATACTTTCCCAT
1 ATTTTTTTATACTTTCCCAT
*
30120678 GTTTTTTT
1 ATTTTTTT
30120686 TTAGTTCCTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.17, C:0.12, G:0.04, T:0.67
Consensus pattern (20 bp):
ATTTTTTTATACTTTCCCAT
Found at i:30120817 original size:20 final size:20
Alignment explanation
Indices: 30120794--30120833 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
30120784 TATTTTTATG
* *
30120794 TATTCTCTCATAATTTTTTA
1 TATTCCCTCAAAATTTTTTA
30120814 TATTCCCTCAAAATTTTTTA
1 TATTCCCTCAAAATTTTTTA
30120834 CTCTCTCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTCCCTCAAAATTTTTTA
Found at i:30121718 original size:7 final size:7
Alignment explanation
Indices: 30121706--30121731 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
30121696 TGATTTTGAC
30121706 AATTATA
1 AATTATA
30121713 AATTATA
1 AATTATA
30121720 AATTATA
1 AATTATA
30121727 AATTA
1 AATTA
30121732 ATATTGATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
AATTATA
Found at i:30125306 original size:27 final size:27
Alignment explanation
Indices: 30125260--30125335 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
30125250 ACGACCAATA
* *
30125260 TAGTCCATTGGGACAGTAAACACAGGG
1 TAGTCCACTGGGATAGTAAACACAGGG
* ***
30125287 TATTCTGGTGGGATAGTAAACACAGGG
1 TAGTCCACTGGGATAGTAAACACAGGG
30125314 TAGTCCACTGGGATAGTAAACA
1 TAGTCCACTGGGATAGTAAACA
30125336 TGAGGATTAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (27 bp):
TAGTCCACTGGGATAGTAAACACAGGG
Found at i:30130358 original size:28 final size:27
Alignment explanation
Indices: 30130327--30130617 Score: 237
Period size: 28 Copynumber: 10.4 Consensus size: 27
30130317 AAATTTCCAC
* *
30130327 AAAGGCTTTTCTTCTAGAGGTTCACCAT
1 AAAGGCTTTCCTT-TAGAGGTTCGCCAT
*
30130355 AAAGGCTTTCCCTTCAGAGGTTCGCCCA-
1 AAAGGCTTT-CCTTTAGAGGTTCG-CCAT
* *
30130383 AAAGGCTTTCCTTTCAAAGGTTTGCCAT
1 AAAGGCTTTCCTTT-AGAGGTTCGCCAT
30130411 AAAGGCTTTCCTTTCAGAGGTTCGACCA-
1 AAAGGCTTTCCTTT-AGAGGTTCG-CCAT
* * * * *
30130439 AAAGGATTTCCTTTCAAAGTTTTGCCAC
1 AAAGGCTTTCCTTT-AGAGGTTCGCCAT
* * * *
30130467 AACGACTTTCCTTTTAAAGGTTTGCCAT
1 AAAGGCTTTCC-TTTAGAGGTTCGCCAT
*
30130495 AAAGGCTTTCCTTTTAGAGGTTTGCCAT
1 AAAGGCTTTCC-TTTAGAGGTTCGCCAT
*
30130523 AAAGGCTTTCCTTTTAGAGGTTCTCCAT
1 AAAGGCTTTCC-TTTAGAGGTTCGCCAT
* * *
30130551 AAAGGTTTTCCTTTCAGAGGTTAGTCAT
1 AAAGGCTTTCCTTT-AGAGGTTCGCCAT
* * *
30130579 AAAAGGTTTTTCTTTCAGAGGTTTGCC-T
1 -AAAGGCTTTCCTTT-AGAGGTTCGCCAT
30130607 CAAAGGCTTTC
1 -AAAGGCTTTC
30130618 AGTTTTCTAG
Statistics
Matches: 222, Mismatches: 32, Indels: 18
0.82 0.12 0.07
Matches are distributed among these distances:
27 13 0.06
28 174 0.78
29 35 0.16
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
AAAGGCTTTCCTTTAGAGGTTCGCCAT
Found at i:30130387 original size:56 final size:55
Alignment explanation
Indices: 30130351--30130617 Score: 291
Period size: 56 Copynumber: 4.7 Consensus size: 55
30130341 TAGAGGTTCA
*
30130351 CCATAAAGGCTTTCCCTTCAGAGGTTCGCCCAAAAGGCTTTCCTTTCAAAGGTTTG
1 CCATAAAGGCTTTCCTTTCAGAGGTTCG-CCAAAAGGCTTTCCTTTCAAAGGTTTG
* *
30130407 CCATAAAGGCTTTCCTTTCAGAGGTTCGACCAAAAGGATTTCCTTTCAAAGTTTTG
1 CCATAAAGGCTTTCCTTTCAGAGGTTCG-CCAAAAGGCTTTCCTTTCAAAGGTTTG
* * * * * * * *
30130463 CCACAACGACTTTCCTTTTAAAGGTTTGCCATAAAGGCTTTCCTTTTAGAGGTTTG
1 CCATAAAGGCTTTCCTTTCAGAGGTTCGCCA-AAAGGCTTTCCTTTCAAAGGTTTG
* * * * *
30130519 CCATAAAGGCTTTCCTTTTAGAGGTTCTCCATAAAGGTTTTCCTTTCAGAGGTTAG
1 CCATAAAGGCTTTCCTTTCAGAGGTTCGCCA-AAAGGCTTTCCTTTCAAAGGTTTG
* * * * *
30130575 TCATAAAAGGTTTTTCTTTCAGAGGTTTGCCTCAAAGGCTTTC
1 CCAT-AAAGGCTTTCCTTTCAGAGGTTCGCC-AAAAGGCTTTC
30130618 AGTTTTCTAG
Statistics
Matches: 177, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
55 3 0.02
56 144 0.81
57 30 0.17
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.36
Consensus pattern (55 bp):
CCATAAAGGCTTTCCTTTCAGAGGTTCGCCAAAAGGCTTTCCTTTCAAAGGTTTG
Found at i:30130415 original size:84 final size:84
Alignment explanation
Indices: 30130327--30130601 Score: 304
Period size: 84 Copynumber: 3.3 Consensus size: 84
30130317 AAATTTCCAC
* *
30130327 AAAGGCTTTTC-TTCTAGAGGTTCACCATAAAGGCTTTCCCTTCAGAGGTTCGCC-CAAAAGGCT
1 AAAGGCTTTCCTTTC-AGAGGTTCACCATAAAGGCTTTCCTTTCAGAGGTTCGCCAC-AAAGGCT
30130390 TTCCTTTCAAAGGTTTGCCAT
64 TTCCTTTCAAAGGTTTGCCAT
* * * * * *
30130411 AAAGGCTTTCCTTTCAGAGGTTCGACCA-AAAGGATTTCCTTTCAAAGTTTTGCCACAACGACTT
1 AAAGGCTTTCCTTTCAGAGGTTC-ACCATAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTT
*
30130475 TCCTTTTAAAGGTTTGCCAT
65 TCCTTTCAAAGGTTTGCCAT
* ** * * * *
30130495 AAAGGCTTTCCTTTTAGAGGTTTGCCATAAAGGCTTTCCTTTTAGAGGTTCTCCATAAAGGTTTT
1 AAAGGCTTTCCTTTCAGAGGTTCACCATAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTT
* * *
30130560 CCTTTCAGAGGTTAGTCAT
66 CCTTTCAAAGGTTTGCCAT
* *
30130579 AAAAGGTTTTTCTTTCAGAGGTT
1 -AAAGGCTTTCCTTTCAGAGGTT
30130602 TGCCTCAAAG
Statistics
Matches: 157, Mismatches: 29, Indels: 9
0.81 0.15 0.05
Matches are distributed among these distances:
83 3 0.02
84 127 0.81
85 27 0.17
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (84 bp):
AAAGGCTTTCCTTTCAGAGGTTCACCATAAAGGCTTTCCTTTCAGAGGTTCGCCACAAAGGCTTT
CCTTTCAAAGGTTTGCCAT
Found at i:30133237 original size:6 final size:6
Alignment explanation
Indices: 30133226--30133252 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
30133216 CTAGAAAGAA
30133226 AAAAAT AAAAAT AAAAAT AAAAAT AAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAA
30133253 TGAAAGTCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Done.