Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D08
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65987480
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 223646 characters in sequence are not A, C, G, or T
File 97 of 211
Found at i:30415898 original size:22 final size:23
Alignment explanation
Indices: 30415864--30415912 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
30415854 ATAAAAATGA
*
30415864 AAATAAAATAAAATAGTAAAATT
1 AAATAAAATAAAATAGGAAAATT
*
30415887 AAATAATA-AAAATAGGAAAATT
1 AAATAAAATAAAATAGGAAAATT
30415909 AAAT
1 AAAT
30415913 TTTTTTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 17 0.71
23 7 0.29
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.24
Consensus pattern (23 bp):
AAATAAAATAAAATAGGAAAATT
Found at i:30420416 original size:23 final size:23
Alignment explanation
Indices: 30420383--30420465 Score: 130
Period size: 23 Copynumber: 3.6 Consensus size: 23
30420373 CTTTTAATCA
* *
30420383 CACTGATATGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGTAGCTAC
*
30420406 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGTAGCTAC
*
30420429 CACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGTAGCTAC
30420452 CACTGAAATGTAGC
1 CACTGAAATGTAGC
30420466 GAAAGCTACC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (23 bp):
CACTGAAATGTAGCCGTAGCTAC
Found at i:30420450 original size:46 final size:46
Alignment explanation
Indices: 30420383--30420481 Score: 164
Period size: 46 Copynumber: 2.2 Consensus size: 46
30420373 CTTTTAATCA
*
30420383 CACTGATATGTAGTCGTAGCTACCACTGAAATGTAGCCG-AAGCTAC
1 CACTGATATGTAGCCGTAGCTACCACTGAAATGTAG-CGAAAGCTAC
30420429 CACTGATATGTAGCCGTAGCTACCACTGAAATGTAGCGAAAGCTAC
1 CACTGATATGTAGCCGTAGCTACCACTGAAATGTAGCGAAAGCTAC
*
30420475 CATTGAT
1 CACTGAT
30420482 CAATAACACT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
45 2 0.04
46 48 0.96
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (46 bp):
CACTGATATGTAGCCGTAGCTACCACTGAAATGTAGCGAAAGCTAC
Found at i:30420472 original size:23 final size:23
Alignment explanation
Indices: 30420383--30420476 Score: 127
Period size: 23 Copynumber: 4.1 Consensus size: 23
30420373 CTTTTAATCA
* * *
30420383 CACTGATATGTAGTCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
30420406 CACTGAAATGTAGCCGAAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
* *
30420429 CACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTAC
30420452 CACTGAAATGTAG-CGAAAGCTAC
1 CACTGAAATGTAGCCG-AAGCTAC
30420475 CA
1 CA
30420477 TTGATCAATA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
22 2 0.03
23 61 0.97
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (23 bp):
CACTGAAATGTAGCCGAAGCTAC
Found at i:30420725 original size:18 final size:17
Alignment explanation
Indices: 30420699--30420737 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
30420689 ATTTTCCTTC
30420699 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
30420716 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
30420734 CACA
1 CACA
30420738 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:30420952 original size:30 final size:30
Alignment explanation
Indices: 30420918--30420976 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
30420908 TTCTTGACTC
30420918 AAACTTTGGCAAAATTACGA-TTTTGCCCCT
1 AAACTTTGGCAAAATTAC-ACTTTTGCCCCT
* * *
30420948 AAACTTTTGCATATTTACACTTTTGCCCC
1 AAACTTTGGCAAAATTACACTTTTGCCCC
30420977 AAAGCTCGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.37
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACACTTTTGCCCCT
Found at i:30422661 original size:7 final size:7
Alignment explanation
Indices: 30422649--30422674 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
30422639 TAGTCGATTG
30422649 GTATTTA
1 GTATTTA
30422656 GTATTTA
1 GTATTTA
30422663 GTATTTA
1 GTATTTA
30422670 GTATT
1 GTATT
30422675 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:30423328 original size:18 final size:18
Alignment explanation
Indices: 30423292--30423334 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
30423282 TGCCAGGTGC
* *
30423292 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
*
30423310 GTATCCTAACGCTTATAT
1 GTATCCTAACCCTTATAT
*
30423328 GTTTCCT
1 GTATCCT
30423335 TTTCTAGTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:30426800 original size:37 final size:37
Alignment explanation
Indices: 30426759--30426830 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
30426749 CTAATCCTTA
30426759 TATGTTTCCTTTTTCCTTCTCTCCTATACTCTTTTTG
1 TATGTTTCCTTTTTCCTTCTCTCCTATACTCTTTTTG
30426796 TATGTTTCCTTTTTCCTTCTCTCCTATACTCTTTT
1 TATGTTTCCTTTTTCCTTCTCTCCTATACTCTTTT
30426831 AATAAATTTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.08, C:0.28, G:0.04, T:0.60
Consensus pattern (37 bp):
TATGTTTCCTTTTTCCTTCTCTCCTATACTCTTTTTG
Found at i:30440488 original size:26 final size:26
Alignment explanation
Indices: 30440458--30440508 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
30440448 CACCAATGAA
*
30440458 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
30440484 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
30440509 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:30440534 original size:102 final size:103
Alignment explanation
Indices: 30440321--30440685 Score: 616
Period size: 102 Copynumber: 3.6 Consensus size: 103
30440311 TAACCGTTAT
* *
30440321 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
30440386 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
30440426 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
30440490 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
30440528 TGGTGGATATCGCACTTAGCACCACCAATGAA-CGGGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
30440592 ATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
30440629 TGGTGGATCA-CGCACATAGCACCACC-AT-AATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
30440686 TTTATATACA
Statistics
Matches: 253, Mismatches: 5, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
99 2 0.01
100 26 0.10
101 45 0.18
102 98 0.39
103 25 0.10
104 27 0.11
105 30 0.12
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:30440590 original size:26 final size:26
Alignment explanation
Indices: 30440560--30440611 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
30440550 CACCAATGAA
*
30440560 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
30440586 CGGGGAATCAGCACATAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
30440612 TTCACATTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:30448152 original size:105 final size:105
Alignment explanation
Indices: 30447902--30448273 Score: 642
Period size: 104 Copynumber: 3.6 Consensus size: 105
30447892 TAACCGTTAT
* * *
30447902 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
30447967 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* *
30448006 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
30448070 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
30448111 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
30448175 AATCAACACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
**
30448215 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
30448274 TTTATATACA
Statistics
Matches: 257, Mismatches: 8, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
104 182 0.71
105 74 0.29
106 1 0.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (105 bp):
TGGTGGATCACGCACATAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:30448173 original size:26 final size:26
Alignment explanation
Indices: 30448143--30448194 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
30448133 CACCAATGAA
* *
30448143 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAACACATAGCAACCCC
30448169 TCGGGGAATCAACACATAGCAACCCC
1 TCGGGGAATCAACACATAGCAACCCC
30448195 CTTTTCACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.35, G:0.21, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAACACATAGCAACCCC
Found at i:30458571 original size:23 final size:20
Alignment explanation
Indices: 30458522--30458571 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
30458512 ATGACATTAG
*
30458522 ACAAGTAAATAAATTAATGC
1 ACAAATAAATAAATTAATGC
*
30458542 ACGAATAAATAAATCTAATATGC
1 ACAAATAAATAAAT-T-A-ATGC
30458565 ACAAATA
1 ACAAATA
30458572 CTAAAAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 12 0.50
21 1 0.04
22 1 0.04
23 10 0.42
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (20 bp):
ACAAATAAATAAATTAATGC
Found at i:30483607 original size:27 final size:28
Alignment explanation
Indices: 30483539--30483601 Score: 110
Period size: 27 Copynumber: 2.3 Consensus size: 28
30483529 AAAAAATAAT
*
30483539 CAAAATATTATAACTTTCTTTTATTTAC
1 CAAAATATTATAAATTTCTTTTATTTAC
30483567 CAAAATATTATAAATTT-TTTTATTTAC
1 CAAAATATTATAAATTTCTTTTATTTAC
30483594 CAAAATAT
1 CAAAATAT
30483602 ACTAAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 18 0.53
28 16 0.47
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (28 bp):
CAAAATATTATAAATTTCTTTTATTTAC
Found at i:30483683 original size:27 final size:27
Alignment explanation
Indices: 30483653--30483704 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
30483643 GGCCAATCAC
30483653 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAAAGGTGCCAAAGAG
*
30483680 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAAAGGTGCCAAAG
30483705 GACTAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.23, G:0.33, T:0.13
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAGAG
Found at i:30484046 original size:15 final size:15
Alignment explanation
Indices: 30484026--30484058 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
30484016 GTATAAACTA
30484026 ATTCGCATTTTATGT
1 ATTCGCATTTTATGT
30484041 ATTCGCATTTTATGT
1 ATTCGCATTTTATGT
30484056 ATT
1 ATT
30484059 ATTTTGGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.55
Consensus pattern (15 bp):
ATTCGCATTTTATGT
Found at i:30484743 original size:27 final size:27
Alignment explanation
Indices: 30484686--30484744 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
30484676 TTTTAGTCTT
*
30484686 TTGGCACCATTGGTGCCGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * *
30484713 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
30484740 TTGGC
1 TTGGC
30484745 CTGATCATGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.29, G:0.27, T:0.31
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:30484834 original size:28 final size:28
Alignment explanation
Indices: 30484798--30484863 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
30484788 TTTTTGTGGT
* *
30484798 ATATTTTGGTAAATAAAAAACATTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
30484826 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
30484854 ATATTTTGGT
1 ATATTTTGGT
30484864 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.41
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:30485234 original size:25 final size:23
Alignment explanation
Indices: 30485197--30485245 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 23
30485187 AGCGCAAGTA
30485197 ATTTTTATCAATATATTCTTTTCTT
1 ATTTTTAT-AA-ATATTCTTTTCTT
*
30485222 ATTTTTGTAAATATTCTTTTCTT
1 ATTTTTATAAATATTCTTTTCTT
30485245 A
1 A
30485246 GTTTCCAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.61
24 2 0.09
25 7 0.30
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.63
Consensus pattern (23 bp):
ATTTTTATAAATATTCTTTTCTT
Found at i:30499487 original size:28 final size:29
Alignment explanation
Indices: 30499455--30499511 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 29
30499445 TTCCCCCTAA
* *
30499455 TTTTTAT-GGCTTAACTTAAACCTTTTAG
1 TTTTTATAGGCTTAACTAAAACCCTTTAG
30499483 TTTTTATGAGGCTTAACTAAAACCCTTTA
1 TTTTTAT-AGGCTTAACTAAAACCCTTTA
30499512 CAAATTACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.28
30 18 0.72
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.46
Consensus pattern (29 bp):
TTTTTATAGGCTTAACTAAAACCCTTTAG
Found at i:30499994 original size:22 final size:21
Alignment explanation
Indices: 30499968--30500022 Score: 83
Period size: 22 Copynumber: 2.6 Consensus size: 21
30499958 CAGTTGGAAG
*
30499968 GGTGTTGTACTTTTTGAGTAAA
1 GGTGTTGTACTTCTTGAG-AAA
*
30499990 GGTGTTGTACCTCTTGAGAAA
1 GGTGTTGTACTTCTTGAGAAA
30500011 GGTGTTGTACTT
1 GGTGTTGTACTT
30500023 AGACGGAAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 14 0.47
22 16 0.53
ACGTcount: A:0.20, C:0.09, G:0.29, T:0.42
Consensus pattern (21 bp):
GGTGTTGTACTTCTTGAGAAA
Found at i:30500013 original size:21 final size:21
Alignment explanation
Indices: 30499968--30500064 Score: 92
Period size: 21 Copynumber: 4.6 Consensus size: 21
30499958 CAGTTGGAAG
* *
30499968 GGTGTTGTACTTTTTGAGTAAA
1 GGTGTTGTACCTCTTGAG-AAA
30499990 GGTGTTGTACCTCTTGAGAAA
1 GGTGTTGTACCTCTTGAGAAA
*
30500011 GGTGTTGTA-CT-TAGACGGAAA
1 GGTGTTGTACCTCTTGA--GAAA
*
30500032 GGTGTTGTACCACTTGAG-AA
1 GGTGTTGTACCTCTTGAGAAA
*
30500052 GTGTGATGTACCT
1 G-GTGTTGTACCT
30500065 TTCAGTAGGG
Statistics
Matches: 63, Mismatches: 7, Indels: 11
0.78 0.09 0.14
Matches are distributed among these distances:
19 3 0.05
20 5 0.08
21 35 0.56
22 17 0.27
23 3 0.05
ACGTcount: A:0.24, C:0.11, G:0.30, T:0.35
Consensus pattern (21 bp):
GGTGTTGTACCTCTTGAGAAA
Found at i:30507457 original size:30 final size:31
Alignment explanation
Indices: 30507418--30507476 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
30507408 AGAGGTGGGA
*
30507418 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
*
30507449 TGGG-AGGGAGTAAAAATTTTAGGGGAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAA
30507477 GTAAAAGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.39, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:30508774 original size:47 final size:50
Alignment explanation
Indices: 30508684--30508777 Score: 140
Period size: 47 Copynumber: 1.9 Consensus size: 50
30508674 AAACCATGCC
*
30508684 TACTATTTCTGTTAATAAAAATCGGATTCGCATGTTAAGCATGCCCATTA
1 TACTATTTCTGTTAATAAAAATCGGATTCGCATGTTAAACATGCCCATTA
* *
30508734 TACTATTTCTG-TAA-CAAAATCTGA-TCGCATGTTAAACATGCCCA
1 TACTATTTCTGTTAATAAAAATCGGATTCGCATGTTAAACATGCCCA
30508778 CTGAAATGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
47 19 0.46
48 8 0.20
49 3 0.07
50 11 0.27
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (50 bp):
TACTATTTCTGTTAATAAAAATCGGATTCGCATGTTAAACATGCCCATTA
Found at i:30526786 original size:50 final size:50
Alignment explanation
Indices: 30526713--30526836 Score: 131
Period size: 50 Copynumber: 2.5 Consensus size: 50
30526703 CATTGAGATT
* * * * *
30526713 ATGAAAGGTCCCAGGTAAGACCATGTCTGCAACATGGCGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAAACCATGTCTGCAACATGGCATGGGCACCGAG
* ** *
30526763 ATGAGAGGTCCCTCGTAAAACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAAACCATGTCTGCAACATGGCATGGGCACCGAG
** * *
30526813 ATGAGAACTCCCATGTAAGACCAT
1 ATGAGAGGTCCCACGTAAAACCAT
30526837 ATCTAGGATA
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.19
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAAACCATGTCTGCAACATGGCATGGGCACCGAG
Found at i:30537049 original size:17 final size:18
Alignment explanation
Indices: 30537012--30537049 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
30537002 GATTGAGAGT
* *
30537012 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
30537030 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
30537047 GAA
1 GAA
30537050 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:30537062 original size:13 final size:12
Alignment explanation
Indices: 30537031--30537085 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
30537021 TGTGAAACAG
*
30537031 AAAAGAAATTGA
1 AAAAGAAGTTGA
30537043 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
30537055 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
30537067 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
30537079 AAAAGAA
1 AAAAGAA
30537086 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:30543215 original size:40 final size:40
Alignment explanation
Indices: 30543154--30543461 Score: 431
Period size: 40 Copynumber: 7.7 Consensus size: 40
30543144 AGGTCTCGAC
30543154 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
30543193 GATGTACCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
30543233 GATGTACCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
30543273 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
30543313 GATGTATTCGGACTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
30543353 GATGTATCCAGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * * *
30543393 AATATATCCGTGCTAA-ACCTCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCTAGT
* * *
30543433 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
30543462 ATCATGCTGG
Statistics
Matches: 240, Mismatches: 26, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
39 5 0.02
40 233 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:30546817 original size:49 final size:47
Alignment explanation
Indices: 30546757--30547248 Score: 786
Period size: 47 Copynumber: 10.3 Consensus size: 47
30546747 ATACATGATA
* *
30546757 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
30546806 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
30546853 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
30546900 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
30546949 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
30546998 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
30547045 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
30547094 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
30547141 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
30547188 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
30547235 ATAAATGTGATAAG
1 ATATATGTGATAAG
30547249 TCCCGAAGGG
Statistics
Matches: 419, Mismatches: 20, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
47 235 0.56
49 184 0.44
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:30546952 original size:96 final size:95
Alignment explanation
Indices: 30546757--30547248 Score: 799
Period size: 96 Copynumber: 5.1 Consensus size: 95
30546747 ATACATGATA
* *
30546757 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGC
30546822 CTAATGGCCGATGTGATGAATGTGAAAGTGT
65 CTAATGGCCGATGTGATGAATGTGAAAGTGT
30546853 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
* *
30546917 GAATGGCCAATGTGATGAATGTGAAAGTGTAT
66 TAATGGCCGATGTGATGAATGTGAAAGTG--T
30546949 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGC
30547014 CTAATGGCCGATGTGATGAATGTGAAAGTGT
65 CTAATGGCCGATGTGATGAATGTGAAAGTGT
*
30547045 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGC
30547110 CTAATGGCCGATGTGATGAATGTGAAAGTGT
65 CTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
30547141 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGACAGGGCC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
* * * * *
30547205 GAGTGGCCAACGTGATGGATGTGAAAGTGT
66 TAATGGCCGATGTGATGAATGTGAAAGTGT
*
30547235 ATAAATGTGATAAG
1 ATATATGTGATAAG
30547249 TCCCGAAGGG
Statistics
Matches: 374, Mismatches: 18, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
94 98 0.26
96 231 0.62
98 45 0.12
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (95 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:30553979 original size:24 final size:24
Alignment explanation
Indices: 30553952--30554002 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
30553942 AATTTTTATT
*
30553952 TTTATTTTATTTAACTTGGTTAAA
1 TTTATTTTATTTAACTTAGTTAAA
*
30553976 TTTATTTTATTTTACTTAGTTAAA
1 TTTATTTTATTTAACTTAGTTAAA
30554000 TTT
1 TTT
30554003 TAGTTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.63
Consensus pattern (24 bp):
TTTATTTTATTTAACTTAGTTAAA
Found at i:30556362 original size:17 final size:17
Alignment explanation
Indices: 30556336--30556369 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
30556326 ATAGTTTATA
30556336 TATTATAATTAA-ATTT
1 TATTATAATTAATATTT
30556352 TATTAATAATTAATATTT
1 TATT-ATAATTAATATTT
30556370 ATTGCTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 8 0.50
18 4 0.25
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TATTATAATTAATATTT
Found at i:30556606 original size:13 final size:13
Alignment explanation
Indices: 30556590--30556640 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
30556580 TTTAAACCAA
30556590 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
30556603 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
* *
30556616 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
30556629 ACTTTTCAAAAG
1 ACTTTTCAAAAG
30556641 TAATGAAGAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.31
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:30556629 original size:26 final size:26
Alignment explanation
Indices: 30556590--30556642 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30556580 TTTAAACCAA
30556590 ACTTTTCAAAAGCACTTCTCAAAAGT
1 ACTTTTCAAAAGCACTTCTCAAAAGT
* * *
30556616 ACTTTTCCACAGCACTTTTCAAAAGT
1 ACTTTTCAAAAGCACTTCTCAAAAGT
30556642 A
1 A
30556643 ATGAAGAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.25, G:0.08, T:0.32
Consensus pattern (26 bp):
ACTTTTCAAAAGCACTTCTCAAAAGT
Found at i:30561497 original size:50 final size:50
Alignment explanation
Indices: 30561381--30561714 Score: 343
Period size: 50 Copynumber: 6.6 Consensus size: 50
30561371 GAATATAACA
* * * * ** * * *
30561381 TGCCAAAGCTATGTCCC-GACATAGTCTTACATGAGATGTTTCATGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * * ** *
30561429 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
** *
30561479 TGCTC-ATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGC-CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* *
30561529 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTCA-G
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AGG
* * *
30561579 TGCCAACGCCATGTCCCAGACATGGTCCTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* *
30561629 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATATCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-----ATCTA-GG
30561685 TGCCAATGCCATGTCCCAGACATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
30561715 TTTGGGATCT
Statistics
Matches: 242, Mismatches: 32, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
48 14 0.06
49 25 0.10
50 168 0.69
51 1 0.00
55 3 0.01
56 31 0.13
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
Found at i:30575825 original size:25 final size:25
Alignment explanation
Indices: 30575791--30575918 Score: 143
Period size: 25 Copynumber: 5.1 Consensus size: 25
30575781 TCATGTACAA
* *
30575791 GTATGCTCATACGAGCTGTGAATCG
1 GTATGCTCATACGAGCTATAAATCG
** *
30575816 GTATGCTCATTTGAGCTA-AAGATCA
1 GTATGCTCATACGAGCTATAA-ATCG
30575841 GTATGCTC-TCACGAGCTATAAATCG
1 GTATGCTCAT-ACGAGCTATAAATCG
* *
30575866 GTATACTCTTACGAGCTATAAATCG
1 GTATGCTCATACGAGCTATAAATCG
* *
30575891 GTATGCTCTTACGAGCTATAAATTG
1 GTATGCTCATACGAGCTATAAATCG
30575916 GTA
1 GTA
30575919 ACCCTAATGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
24 2 0.02
25 83 0.94
26 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATAAATCG
Found at i:30581499 original size:17 final size:16
Alignment explanation
Indices: 30581472--30581505 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
30581462 TTATTAACCC
30581472 AAATTAAATTAGATAT
1 AAATTAAATTAGATAT
*
30581488 AAATTAAAATTAGTTAT
1 AAATT-AAATTAGATAT
30581505 A
1 A
30581506 TTATGAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (16 bp):
AAATTAAATTAGATAT
Found at i:30584328 original size:21 final size:22
Alignment explanation
Indices: 30584282--30584329 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
30584272 CTCTATCGGA
*
30584282 AAATTAGGAAAAGTTAGAAATG
1 AAATTAGGAAAAGTTAGAAATC
30584304 AAATTA-GACAAAGTTA-AAATC
1 AAATTAGGA-AAAGTTAGAAATC
30584325 AAATT
1 AAATT
30584330 CTGGTTGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.56, C:0.04, G:0.15, T:0.25
Consensus pattern (22 bp):
AAATTAGGAAAAGTTAGAAATC
Found at i:30598124 original size:41 final size:40
Alignment explanation
Indices: 30598021--30598140 Score: 123
Period size: 41 Copynumber: 3.0 Consensus size: 40
30598011 ATATCAATGA
* * * * *
30598021 TATCAAGGCTATATGCCTAGCATGCTTTAAGCCGGTGGAAG
1 TATC-AGGCTTTATGCCTAGCAGGCTTTATGCCGGTGTAAC
* * *
30598062 TATCAAGCGTTATGCCTAGCAGGCTTTATGCCGGTGTACTC
1 TATCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGTA-AC
* **
30598103 TATTAGGCTTTATGCCTAGCAGGCTTGGTGCCGGTGTA
1 TATCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGTA
30598141 TCATTTTTGG
Statistics
Matches: 65, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 28 0.43
41 37 0.57
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (40 bp):
TATCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGTAAC
Found at i:30600374 original size:20 final size:21
Alignment explanation
Indices: 30600335--30600374 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
30600325 AAAAAAGTAT
*
30600335 AAAAAGAACTAAAATGAAAAG
1 AAAAAGAACTAAAATAAAAAG
*
30600356 AAAAA-AACTAAACTAAAAA
1 AAAAAGAACTAAAATAAAAA
30600375 CCCTAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.75, C:0.07, G:0.07, T:0.10
Consensus pattern (21 bp):
AAAAAGAACTAAAATAAAAAG
Found at i:30604746 original size:103 final size:104
Alignment explanation
Indices: 30604502--30604767 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
30604492 GTTGTACATA
** *
30604502 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
30604567 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
30604606 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
30604670 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
30604709 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
30604768 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:30612209 original size:103 final size:104
Alignment explanation
Indices: 30611965--30612230 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
30611955 GTTGTACATA
** *
30611965 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
30612030 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
30612069 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
30612133 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
30612172 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
30612231 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:30623578 original size:24 final size:24
Alignment explanation
Indices: 30623536--30623581 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
30623526 TTTTAATTCA
*
30623536 TAGTTTATTTTATTTTATTTTATG
1 TAGTTTATTTTATTCTATTTTATG
30623560 TAGTTTA-TTTATTGCTATTTTA
1 TAGTTTATTTTATT-CTATTTTA
30623582 ATTCTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.09, T:0.67
Consensus pattern (24 bp):
TAGTTTATTTTATTCTATTTTATG
Found at i:30626950 original size:37 final size:37
Alignment explanation
Indices: 30626900--30627044 Score: 227
Period size: 37 Copynumber: 3.9 Consensus size: 37
30626890 ACCTTTAGCT
* * * *
30626900 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTTCC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
30626937 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
30626974 CGGGCAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
* *
30627011 CGGACATACTCTCCACACGTAGTCATCGGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTT
30627045 TAGAGCTCGG
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 100 1.00
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:30627241 original size:47 final size:47
Alignment explanation
Indices: 30627163--30627715 Score: 917
Period size: 47 Copynumber: 11.6 Consensus size: 47
30627153 CCCTTCGGGA
* * * * * *
30627163 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30627210 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30627257 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30627304 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30627351 CTTATCACATATACACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30627398 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30627445 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30627494 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30627541 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
30627588 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30627635 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30627682 CTTATCACATATATATATACACTTTCACATTCAT
1 CTTATCAC----ATATATACACTTTCACATTCAT
30627716 TCAAATATAC
Statistics
Matches: 476, Mismatches: 24, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
47 409 0.86
49 45 0.09
51 22 0.05
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30631637 original size:39 final size:40
Alignment explanation
Indices: 30631562--30631906 Score: 551
Period size: 39 Copynumber: 8.8 Consensus size: 40
30631552 CCAGCATGAT
* * *
30631562 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
30631602 TGCTCTTCGGG-TTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
30631641 TGCTC-TCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
30631680 TGCTCCTCGGGACTTAGCCCGGATACAT-ACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
30631719 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
30631759 TGCTC-TCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
30631798 TGCTCCTCGGGACTTAGCCC-GATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
30631837 TGCTC--CGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
30631875 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
30631907 CTCAATTCTC
Statistics
Matches: 284, Mismatches: 14, Indels: 14
0.91 0.04 0.04
Matches are distributed among these distances:
37 13 0.05
38 28 0.10
39 157 0.55
40 86 0.30
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:30631770 original size:118 final size:118
Alignment explanation
Indices: 30631562--30631906 Score: 545
Period size: 118 Copynumber: 2.9 Consensus size: 118
30631552 CCAGCATGAT
* * * * * *
30631562 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGG-TTTAGCACGGATA
1 TGCTCCTCGGGACTTAGCCCGGATA-AATACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
30631626 TATCACTAGCACGAATGCTCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
65 TATCACTAGCACGAATGCTCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
30631680 TGCTCCTCGGGACTTAGCCCGGATACATACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 TGCTCCTCGGGACTTAGCCCGGATAAATACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
30631745 ATCACTAGCACGAATGCTCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
66 ATCACTAGCACGAATGCTCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
30631798 TGCTCCTCGGGACTTAGCCC-GATATATCACTAGCACGAATGCTC--CGGGACTTAGCCCGGATA
1 TGCTCCTCGGGACTTAGCCCGGATAAAT-ACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
*
30631860 CATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
65 TATCACTAGCACGAATGCTC-TCGGGACTTAGCCCGGATATATCACT
30631907 CTCAATTCTC
Statistics
Matches: 213, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
116 37 0.17
117 53 0.25
118 123 0.58
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (118 bp):
TGCTCCTCGGGACTTAGCCCGGATAAATACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
ATCACTAGCACGAATGCTCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:30633208 original size:34 final size:35
Alignment explanation
Indices: 30633164--30633301 Score: 149
Period size: 34 Copynumber: 3.9 Consensus size: 35
30633154 GACTTTAGCT
* * *
30633164 CGGACGAAATCTCCACACGAAGTTATCGGTCTT-C
1 CGGACAAAATCTCCACACGTAGTCATCGGTCTTAC
30633198 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATC-GGTCTTA-C
*
30633235 CGG-GAAAATCTCCACACGTAGTCA--GGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGTCTTA-C
* * *
30633268 CGGACATACTCTCCACACGTAGTCACCGGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATC-GGTCTT
30633302 GAAAGCTCGG
Statistics
Matches: 90, Mismatches: 7, Indels: 11
0.83 0.06 0.10
Matches are distributed among these distances:
33 12 0.13
34 42 0.47
35 6 0.07
36 20 0.22
37 10 0.11
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.22
Consensus pattern (35 bp):
CGGACAAAATCTCCACACGTAGTCATCGGTCTTAC
Found at i:30633283 original size:70 final size:69
Alignment explanation
Indices: 30633170--30633301 Score: 185
Period size: 70 Copynumber: 1.9 Consensus size: 69
30633160 AGCTCGGACG
* *
30633170 AAATCTCCACACGAAGTTATCGGTCTTCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 AAATCTCCACACGAAGTCA-CGGTCTTCCGGACAAAATCTCCACACGTAGTCACCGGGTCTTACC
30633235 CGGGA
65 CGGGA
* * *
30633240 AAATCTCCACACGTAGTCA-GGTCTTACCCGGACATACTCTCCACACGTAGTCACCGGGTCTT
1 AAATCTCCACACGAAGTCACGGTCTT--CCGGACAAAATCTCCACACGTAGTCACCGGGTCTT
30633302 GAAAGCTCGG
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
68 6 0.11
70 49 0.89
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (69 bp):
AAATCTCCACACGAAGTCACGGTCTTCCGGACAAAATCTCCACACGTAGTCACCGGGTCTTACCC
GGGA
Found at i:30633537 original size:47 final size:47
Alignment explanation
Indices: 30633420--30633968 Score: 958
Period size: 47 Copynumber: 11.6 Consensus size: 47
30633410 CCGTTCGGGA
* * * * * *
30633420 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30633467 C-TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30633513 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30633560 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30633607 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30633653 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30633700 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30633749 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30633796 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30633843 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30633890 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30633937 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
30633969 TCAAATATAC
Statistics
Matches: 482, Mismatches: 14, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
46 85 0.18
47 329 0.68
49 68 0.14
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30633994 original size:283 final size:280
Alignment explanation
Indices: 30633431--30633995 Score: 920
Period size: 283 Copynumber: 2.0 Consensus size: 280
30633421 TTATCACATT
* * *
30633431 TATACACTTTCACATCCATCACGTTGGCCACTCGGCCTGTCACATATATACACTTTCACATTCAT
1 TATACACTTTCACATCCATCACATTGGCCACTAGGCCTATCACATATATACACTTTCACATTCAT
30633496 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
66 CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
30633561 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
131 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
* *
30633626 TTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGG
196 TTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCAAATCAG
* * *
30633691 CCATTAGGCCTTATCACATATA
261 ACATTA-G-CATACCACATATA
* *
30633713 TATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCA
1 TATACACTTTCACATCCATCACATTGGCCACTAGGCC-TATCACATATATACACTTTCACATTCA
30633778 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
65 TCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30633843 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
130 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
30633908 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATTCAA
195 TTTCACATTCATCACATCGG-CATTAGGCCTTATCAC--ATATATACACTTTCACATTCA-TCAA
*
30633973 AT-ATAC-TTCA-CATACCACATATA
256 ATCAGACATT-AGCATACCACATATA
30633996 CTATCATGTA
Statistics
Matches: 264, Mismatches: 13, Indels: 11
0.92 0.05 0.04
Matches are distributed among these distances:
282 33 0.12
283 185 0.70
284 16 0.06
285 2 0.01
286 23 0.09
287 5 0.02
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (280 bp):
TATACACTTTCACATCCATCACATTGGCCACTAGGCCTATCACATATATACACTTTCACATTCAT
CACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCAAATCAG
ACATTAGCATACCACATATA
Found at i:30637675 original size:39 final size:39
Alignment explanation
Indices: 30637621--30637698 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
30637611 CCCTTTTCAG
*
30637621 CCAAATCCCTAAGTCTTTCTGCGATTTCCCCTCATCCTT
1 CCAAATCCCTAAGTCTTTCTGCGATTTCCCCCCATCCTT
*
30637660 CCAAATCCCTAAGTCTTTCTTCGATTTCCCCCCATCCTT
1 CCAAATCCCTAAGTCTTTCTGCGATTTCCCCCCATCCTT
30637699 TCTGATTTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.18, C:0.40, G:0.06, T:0.36
Consensus pattern (39 bp):
CCAAATCCCTAAGTCTTTCTGCGATTTCCCCCCATCCTT
Found at i:30637707 original size:20 final size:20
Alignment explanation
Indices: 30637682--30637721 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
30637672 GTCTTTCTTC
30637682 GATTTCCCCCCATCCTTTCT
1 GATTTCCCCCCATCCTTTCT
*
30637702 GATTTCCCCTCATCCTTTCT
1 GATTTCCCCCCATCCTTTCT
30637722 TCATCTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.42, G:0.05, T:0.42
Consensus pattern (20 bp):
GATTTCCCCCCATCCTTTCT
Found at i:30639385 original size:17 final size:17
Alignment explanation
Indices: 30639363--30639395 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
30639353 TTATTTTCTA
30639363 TATAAGTTTTCTAAATT
1 TATAAGTTTTCTAAATT
*
30639380 TATAAGTTTTGTAAAT
1 TATAAGTTTTCTAAAT
30639396 AATTATTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (17 bp):
TATAAGTTTTCTAAATT
Found at i:30639441 original size:15 final size:16
Alignment explanation
Indices: 30639404--30639442 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
30639394 ATAATTATTC
*
30639404 TAAATTTATTAGTATA
1 TAAATTTAGTAGTATA
*
30639420 AAAATTTAGTAGTAT-
1 TAAATTTAGTAGTATA
30639435 TAAATTTA
1 TAAATTTA
30639443 TAAGTTTTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (16 bp):
TAAATTTAGTAGTATA
Found at i:30639443 original size:61 final size:61
Alignment explanation
Indices: 30639374--30639523 Score: 178
Period size: 61 Copynumber: 2.5 Consensus size: 61
30639364 ATAAGTTTTC
30639374 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGT-ATAAAAATTTAGT-AGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAAT-AAAATTTA-TAAGTAT
* * * * * *
30639435 TAAATTTATAAGTTTTCTAAAAAAGTGTTCTAGATTTATTATTAATAAAATTTATAAGTAT
1 TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
* * * *
30639496 CAATTTTACACGTTTTGTAAATAATTAT
1 TAAATTTATAAGTTTTGTAAATAATTAT
30639524 ATATTTTTTA
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
60 1 0.01
61 70 0.96
62 2 0.03
ACGTcount: A:0.41, C:0.04, G:0.08, T:0.47
Consensus pattern (61 bp):
TAAATTTATAAGTTTTGTAAATAATTATTCTAAATTTATTAGTAATAAAATTTATAAGTAT
Found at i:30639535 original size:19 final size:19
Alignment explanation
Indices: 30639508--30639549 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
30639498 ATTTTACACG
*
30639508 TTTTGTAAATAA-TTATATA
1 TTTTGTAAA-AATTTAAATA
*
30639527 TTTTTTAAAAATTTAAATA
1 TTTTGTAAAAATTTAAATA
30639546 TTTT
1 TTTT
30639550 ATTTATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (19 bp):
TTTTGTAAAAATTTAAATA
Found at i:30639668 original size:8 final size:7
Alignment explanation
Indices: 30639655--30639700 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
30639645 TAACGTATAT
30639655 ATAATAAC
1 ATAAT-AC
30639663 ATAATA-
1 ATAATAC
*
30639669 A-ATTAC
1 ATAATAC
30639675 ATAATAC
1 ATAATAC
30639682 ATAATAGC
1 ATAATA-C
30639690 ATAATAC
1 ATAATAC
30639697 ATAA
1 ATAA
30639701 CTTATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 3 0.09
6 2 0.06
7 16 0.48
8 12 0.36
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.28
Consensus pattern (7 bp):
ATAATAC
Found at i:30639722 original size:21 final size:20
Alignment explanation
Indices: 30639696--30639753 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 20
30639686 TAGCATAATA
30639696 CATAACTTATATATAAGCTTGT
1 CATAACTTATATATAA-CTT-T
*
30639718 -ATAACTTACATAATAACTTT
1 CATAACTTATAT-ATAACTTT
30639738 CATAACTTATATATAA
1 CATAACTTATATATAA
30639754 TCTGATAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 5 0.16
21 23 0.72
22 4 0.12
ACGTcount: A:0.43, C:0.14, G:0.03, T:0.40
Consensus pattern (20 bp):
CATAACTTATATATAACTTT
Found at i:30639749 original size:95 final size:96
Alignment explanation
Indices: 30639643--30639842 Score: 303
Period size: 95 Copynumber: 2.1 Consensus size: 96
30639633 TTACAGCATA
* *
30639643 CATAACGTATATATAATAACATAATAAATTACATAATACATAATAGCATAATACATAACTTATA-
1 CATAACTTATATATAATAACATAATAAATTACATAATACATAATAACATAATACATAACTTATAT
* *
30639707 TATAAGCTTGTATAACTTACATAATAACTTT
66 TATAAGCTTGCATAACTTACATAATAACTTC
*** *
30639738 CATAACTTATATATAATCTGATAATACATTACATAATACATAATAACATAATACATAACTTATAT
1 CATAACTTATATATAATAACATAATAAATTACATAATACATAATAACATAATACATAACTTATAT
*
30639803 TATAATCTTGCATAACTTACATAATAACTTC
66 TATAAGCTTGCATAACTTACATAATAACTTC
*
30639834 CATAGCTTA
1 CATAACTTA
30639843 ATACACCACG
Statistics
Matches: 94, Mismatches: 10, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
95 58 0.62
96 36 0.38
ACGTcount: A:0.47, C:0.14, G:0.04, T:0.35
Consensus pattern (96 bp):
CATAACTTATATATAATAACATAATAAATTACATAATACATAATAACATAATACATAACTTATAT
TATAAGCTTGCATAACTTACATAATAACTTC
Found at i:30639775 original size:12 final size:14
Alignment explanation
Indices: 30639758--30639794 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
30639748 ATATAATCTG
30639758 ATAATACAT-T-AC
1 ATAATACATATAAC
30639770 ATAATACATAATAAC
1 ATAATACAT-ATAAC
30639785 ATAATACATA
1 ATAATACATA
30639795 ACTTATATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.41
14 2 0.09
15 11 0.50
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.30
Consensus pattern (14 bp):
ATAATACATATAAC
Found at i:30639788 original size:8 final size:7
Alignment explanation
Indices: 30639758--30639795 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
30639748 ATATAATCTG
30639758 ATAATAC
1 ATAATAC
30639765 AT--TAC
1 ATAATAC
30639770 ATAATAC
1 ATAATAC
30639777 ATAATAAC
1 ATAAT-AC
30639785 ATAATAC
1 ATAATAC
30639792 ATAA
1 ATAA
30639796 CTTATATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (7 bp):
ATAATAC
Found at i:30639807 original size:27 final size:27
Alignment explanation
Indices: 30639738--30639808 Score: 65
Period size: 27 Copynumber: 2.7 Consensus size: 27
30639728 TAATAACTTT
***
30639738 CATAACTTATA-TATAATCTGATAATA
1 CATAACTTATATTATAATAACATAATA
* * *
30639764 CATTACATA-ATACATAATAACATAATA
1 CATAACTTATAT-TATAATAACATAATA
30639791 CATAACTTATATTATAAT
1 CATAACTTATATTATAAT
30639809 CTTGCATAAC
Statistics
Matches: 33, Mismatches: 9, Indels: 5
0.70 0.19 0.11
Matches are distributed among these distances:
25 1 0.03
26 7 0.21
27 23 0.70
28 2 0.06
ACGTcount: A:0.49, C:0.13, G:0.01, T:0.37
Consensus pattern (27 bp):
CATAACTTATATTATAATAACATAATA
Found at i:30639829 original size:22 final size:21
Alignment explanation
Indices: 30639791--30639842 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
30639781 TAACATAATA
* * *
30639791 CATAACTTATATTATAATCTTG
1 CATAACTTACATAATAA-CTTC
30639813 CATAACTTACATAATAACTTC
1 CATAACTTACATAATAACTTC
*
30639834 CATAGCTTA
1 CATAACTTA
30639843 ATACACCACG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 11 0.42
22 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.04, T:0.38
Consensus pattern (21 bp):
CATAACTTACATAATAACTTC
Found at i:30639930 original size:9 final size:9
Alignment explanation
Indices: 30639902--30640667 Score: 682
Period size: 9 Copynumber: 86.2 Consensus size: 9
30639892 CATATATAGA
*
30639902 AACTGACAT
1 AACTTACAT
* *
30639911 AAATTAAAT
1 AACTTACAT
30639920 AACTTACAT
1 AACTTACAT
30639929 AACTTACAT
1 AACTTACAT
* *
30639938 AAATTAAAT
1 AACTTACAT
30639947 AACTTACAT
1 AACTTACAT
*
30639956 AACTTACAA
1 AACTTACAT
*
30639965 AAATTA-AGT
1 AACTTACA-T
30639974 AACTTACAT
1 AACTTACAT
30639983 AACTTACAT
1 AACTTACAT
*
30639992 AAACTTGCAT
1 -AACTTACAT
* *
30640002 AAATTAAAT
1 AACTTACAT
30640011 AACTTACAT
1 AACTTACAT
30640020 AACTTACAT
1 AACTTACAT
*
30640029 AACCTACAT
1 AACTTACAT
* *
30640038 AAATTAAAT
1 AACTTACAT
30640047 AACTTACAT
1 AACTTACAT
*
30640056 AACTAACAT
1 AACTTACAT
* *
30640065 AAATTAAAT
1 AACTTACAT
30640074 AACTTACAT
1 AACTTACAT
30640083 AACTTACAT
1 AACTTACAT
* * *
30640092 AAATTCCGT
1 AACTTACAT
*
30640101 GGACTTACAT
1 -AACTTACAT
*
30640111 AACCTACAT
1 AACTTACAT
* *
30640120 AAATTAAAT
1 AACTTACAT
30640129 AACTTACAT
1 AACTTACAT
*
30640138 AACCTACAT
1 AACTTACAT
* *
30640147 AAATTAAAT
1 AACTTACAT
*
30640156 AACTTACGT
1 AACTTACAT
30640165 AACTTACAT
1 AACTTACAT
* *
30640174 AAATTAAAT
1 AACTTACAT
30640183 AACTTACAT
1 AACTTACAT
* *
30640192 AAATTAAAT
1 AACTTACAT
* *
30640201 AACTGAAAT
1 AACTTACAT
30640210 AACTTACAT
1 AACTTACAT
30640219 AACTTACAT
1 AACTTACAT
30640228 AACTTACAT
1 AACTTACAT
* *
30640237 AACCTACAC
1 AACTTACAT
* *
30640246 AAATTAAAT
1 AACTTACAT
30640255 AACTTACAT
1 AACTTACAT
30640264 AACTTACAT
1 AACTTACAT
30640273 AACTTACAT
1 AACTTACAT
* *
30640282 AAATTAAAT
1 AACTTACAT
30640291 AACTTACAT
1 AACTTACAT
* *
30640300 AAATTAAAT
1 AACTTACAT
30640309 AACTTACAT
1 AACTTACAT
30640318 AACTTACAT
1 AACTTACAT
* *
30640327 AACCTACAC
1 AACTTACAT
* *
30640336 AAATTAAAT
1 AACTTACAT
30640345 AACTTACAT
1 AACTTACAT
*
30640354 AACTTATAT
1 AACTTACAT
*
30640363 AACCTACAT
1 AACTTACAT
* * *
30640372 AAATTAAAC
1 AACTTACAT
30640381 AACTTACAT
1 AACTTACAT
30640390 AACTTACAT
1 AACTTACAT
* *
30640399 AAATTAAAT
1 AACTTACAT
*
30640408 AACTTAAAT
1 AACTTACAT
30640417 AACTTACAT
1 AACTTACAT
*
30640426 AACTCACAT
1 AACTTACAT
* *
30640435 AACCTACAC
1 AACTTACAT
* *
30640444 AAATTAAAT
1 AACTTACAT
30640453 AACTTACAT
1 AACTTACAT
*
30640462 AACTTGCAT
1 AACTTACAT
* *
30640471 AAATTAAAT
1 AACTTACAT
30640480 AACTTACAT
1 AACTTACAT
30640489 AACTTACAT
1 AACTTACAT
* *
30640498 AAATTAAAT
1 AACTTACAT
*
30640507 TACTTACAT
1 AACTTACAT
30640516 AACTTACAT
1 AACTTACAT
*
30640525 TA--TACAT
1 AACTTACAT
*
30640532 AACCTT-CTT
1 AA-CTTACAT
30640541 AACTTACAT
1 AACTTACAT
* *
30640550 TA--TACAC
1 AACTTACAT
* *
30640557 GACTCACAT
1 AACTTACAT
30640566 AA-TTA-AT
1 AACTTACAT
*
30640573 -ATTATACAT
1 AACT-TACAT
30640582 AACTTACAT
1 AACTTACAT
*
30640591 AA-TAAC-T
1 AACTTACAT
**
30640598 TTCTTACAT
1 AACTTACAT
30640607 AACTTACAT
1 AACTTACAT
*
30640616 TACTTACAGT
1 AACTTACA-T
30640626 -ACTTACA-
1 AACTTACAT
*
30640633 AA-ATACAT
1 AACTTACAT
30640641 AA--TACAT
1 AACTTACAT
30640648 AACTTACAT
1 AACTTACAT
30640657 AACTTACAT
1 AACTTACAT
30640666 AA
1 AA
30640668 TACATAAAAA
Statistics
Matches: 593, Mismatches: 143, Indels: 42
0.76 0.18 0.05
Matches are distributed among these distances:
6 1 0.00
7 26 0.04
8 17 0.03
9 531 0.90
10 18 0.03
ACGTcount: A:0.49, C:0.18, G:0.01, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:30640590 original size:25 final size:26
Alignment explanation
Indices: 30640451--30640621 Score: 94
Period size: 25 Copynumber: 6.7 Consensus size: 26
30640441 CACAAATTAA
*
30640451 ATAACTTACATAACTTGCATAAATTA-A-
1 ATAACTTACATAACTT--A-ATATTATAC
30640478 ATAACTTACATAACTTACATAAATTA-A-
1 ATAACTTACATAACTTA-AT--ATTATAC
* *
30640505 ATTACTTACATAACTT-ACATTATAC
1 ATAACTTACATAACTTAATATTATAC
* *
30640530 ATAACCTT-CTTAACTT-ACATTATAC
1 ATAA-CTTACATAACTTAATATTATAC
** *
30640555 ACGACTCACATAA-TTAATATTATAC
1 ATAACTTACATAACTTAATATTATAC
*
30640580 ATAACTTACATAA--TAACT-TTCTTAC
1 ATAACTTACATAACTTAA-TATT-ATAC
*
30640605 ATAACTTACATTACTTA
1 ATAACTTACATAACTTA
30640622 CAGTACTTAC
Statistics
Matches: 117, Mismatches: 16, Indels: 22
0.75 0.10 0.14
Matches are distributed among these distances:
23 4 0.03
24 10 0.09
25 62 0.53
26 3 0.03
27 38 0.32
ACGTcount: A:0.43, C:0.19, G:0.01, T:0.37
Consensus pattern (26 bp):
ATAACTTACATAACTTAATATTATAC
Found at i:30640653 original size:32 final size:33
Alignment explanation
Indices: 30640602--30640674 Score: 96
Period size: 32 Copynumber: 2.2 Consensus size: 33
30640592 ATAACTTTCT
*
30640602 TACATAACTTACATTACTTACAGT-ACTTACAAAA
1 TACATAAC-TACATAACTTACA-TAACTTACAAAA
*
30640636 TACATAA-TACATAACTTACATAACTTACATAA
1 TACATAACTACATAACTTACATAACTTACAAAA
30640668 TACATAA
1 TACATAA
30640675 AAATATATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
31 1 0.03
32 28 0.78
34 7 0.19
ACGTcount: A:0.48, C:0.19, G:0.01, T:0.32
Consensus pattern (33 bp):
TACATAACTACATAACTTACATAACTTACAAAA
Found at i:30645317 original size:21 final size:21
Alignment explanation
Indices: 30645288--30645340 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
30645278 CTACAACTTA
*
30645288 AAGCTGAAGCAGCAGCGACG-G
1 AAGCAGAAGCAGCAGCGA-GAG
*
30645309 AAGCAGAAGCTGCAGCGAGAG
1 AAGCAGAAGCAGCAGCGAGAG
30645330 AAGCAG-AGCAG
1 AAGCAGAAGCAG
30645341 TCCAAAAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 5 0.18
21 23 0.82
ACGTcount: A:0.38, C:0.21, G:0.38, T:0.04
Consensus pattern (21 bp):
AAGCAGAAGCAGCAGCGAGAG
Found at i:30645788 original size:42 final size:42
Alignment explanation
Indices: 30645738--30645940 Score: 352
Period size: 42 Copynumber: 4.8 Consensus size: 42
30645728 TAAGAATAAA
*
30645738 CGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
30645780 CGCTGCTAAAGTACATGGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* *
30645822 CGCCGCTAAAGAACATTGTCTTTAGCGGCGCTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
*
30645864 CGCCGCTAAAGAACATGGTCTTTAGAGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
30645906 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
30645941 GTTTGTAAAC
Statistics
Matches: 150, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 150 1.00
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:30645802 original size:126 final size:126
Alignment explanation
Indices: 30645655--30645939 Score: 310
Period size: 126 Copynumber: 2.3 Consensus size: 126
30645645 TTTTGTATAA
* *****
30645655 AAGCGCCGCTAAAG-A-AT--TCTTTAGCGGGGTTTTAAAAAAAACGCCACTATTTTTCA-TGTT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTAAAAAAAACGCCACTAAAGAACATTG-T
*
30645715 CTTTAGCGGCACTTAAGAATAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
65 CTTTAGCGGCACTTAAGAATAAACGCCGCTAAAGAACATGATCTTTAGAGGCGTTTTTTTCT
* * ***** * *
30645777 AAGCGCTGCTAAAGTACATGGTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATTGTC
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTAAAAAAAACGCCACTAAAGAACATTGTC
* ***** * *
30645842 TTTAGCGGCGCTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTTTAGAGGCGTTTTTTTCT
66 TTTAGCGGCACTTAAGAATAAACGCCGCTAAAGAACATGATCTTTAGAGGCGTTTTTTTCT
30645903 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTT
1 AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTT
30645940 TGTTTGTAAA
Statistics
Matches: 133, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
122 13 0.10
123 1 0.01
124 2 0.02
126 115 0.86
127 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (126 bp):
AAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTAAAAAAAACGCCACTAAAGAACATTGTC
TTTAGCGGCACTTAAGAATAAACGCCGCTAAAGAACATGATCTTTAGAGGCGTTTTTTTCT
Found at i:30648342 original size:7 final size:6
Alignment explanation
Indices: 30648326--30648376 Score: 50
Period size: 6 Copynumber: 8.2 Consensus size: 6
30648316 TCTTTCCTGC
* *
30648326 AAAAAT AAAAAT GAAAAT -AAAAT AAAATAGT AAAAAT AAATAAT AATAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAA-A-T AAAAAT AAA-AAT AAAAAT
30648376 A
1 A
30648377 GGAAAATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 5 0.13
6 22 0.56
7 7 0.18
8 5 0.13
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.22
Consensus pattern (6 bp):
AAAAAT
Found at i:30649657 original size:30 final size:30
Alignment explanation
Indices: 30649621--30649680 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
30649611 TCTACATATT
30649621 TTTTTCTAGAATTTTTGGTCGGGCCAATTA
1 TTTTTCTAGAATTTTTGGTCGGGCCAATTA
30649651 TTTTTCTAGAATTTTTGGTCGGGCCAATTA
1 TTTTTCTAGAATTTTTGGTCGGGCCAATTA
30649681 GTACAGTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.20, C:0.13, G:0.20, T:0.47
Consensus pattern (30 bp):
TTTTTCTAGAATTTTTGGTCGGGCCAATTA
Found at i:30653214 original size:17 final size:18
Alignment explanation
Indices: 30653177--30653214 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
30653167 GATTGAGAGT
* *
30653177 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
30653195 GAAAAGAAAT-TGAAAAA
1 GAAAAGAAATGTGAAAAA
30653212 GAA
1 GAA
30653215 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.63, C:0.03, G:0.24, T:0.11
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:30653227 original size:13 final size:12
Alignment explanation
Indices: 30653196--30653250 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
30653186 TGTGAAACAG
*
30653196 AAAAGAAATTGA
1 AAAAGAAGTTGA
30653208 AAAAGAAGTTGA
1 AAAAGAAGTTGA
*
30653220 AGAAAGAAG-AGA
1 A-AAAGAAGTTGA
*
30653232 AAATG-AGTTAGA
1 AAAAGAAGTT-GA
30653244 AAAAGAA
1 AAAAGAA
30653251 ACAAAAGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 21 0.62
13 8 0.24
ACGTcount: A:0.64, C:0.00, G:0.24, T:0.13
Consensus pattern (12 bp):
AAAAGAAGTTGA
Found at i:30655843 original size:47 final size:47
Alignment explanation
Indices: 30655765--30656362 Score: 953
Period size: 47 Copynumber: 12.6 Consensus size: 47
30655755 CCCTTCGGGA
* * * * * *
30655765 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30655812 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30655859 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30655906 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30655955 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30656004 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30656051 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30656098 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30656145 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30656192 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
30656241 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30656290 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30656337 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
30656363 CACAATTATC
Statistics
Matches: 519, Mismatches: 28, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 331 0.64
49 188 0.36
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30656103 original size:192 final size:190
Alignment explanation
Indices: 30655765--30656362 Score: 983
Period size: 192 Copynumber: 3.1 Consensus size: 190
30655755 CCCTTCGGGA
* * * * * *
30655765 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
*
30655828 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* * *
30655893 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
131 TTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30655955 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
30656020 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
30656085 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30656145 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCAC--ATATAT
30656208 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
*
30656273 CACATTGGCCATTCGGTCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
127 CACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30656337 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
30656363 CACAATTATC
Statistics
Matches: 386, Mismatches: 14, Indels: 14
0.93 0.03 0.03
Matches are distributed among these distances:
188 46 0.12
190 102 0.26
191 1 0.00
192 228 0.59
194 9 0.02
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30656277 original size:286 final size:286
Alignment explanation
Indices: 30655765--30656363 Score: 1081
Period size: 286 Copynumber: 2.1 Consensus size: 286
30655755 CCCTTCGGGA
* * *
30655765 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
30655830 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
*
30655895 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTAT
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
30655960 CACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTT
196 CACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTT
30656025 CACATTCATCACATCGGCCATTAGGC
261 CACATTCATCACATCGGCCATTAGGC
* * *
30656051 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
* *
30656116 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
30656181 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
30656246 CACATATATATACACTTTCACATTCATCACATTGGCCATTCGGTCTTATCACATATATACACTTT
196 CACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTT
30656311 CACATTCATCACATCGGCCATTAGGC
261 CACATTCATCACATCGGCCATTAGGC
* *
30656337 CTTATCACATATATATACATTCACATC
1 CTTATCACATATATACACTTTCACATC
30656364 ACAATTATCC
Statistics
Matches: 299, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
286 299 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (286 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGC
Found at i:30659957 original size:40 final size:40
Alignment explanation
Indices: 30659925--30660311 Score: 582
Period size: 40 Copynumber: 9.7 Consensus size: 40
30659915 CCAGCATGAT
* * * *
30659925 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
30659965 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
30660005 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
30660045 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
30660085 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
30660125 TGCTCTTC-GGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
30660164 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* **
30660204 TGCTCTTCGGGACTTAGCCCGGGTACATTTCTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
30660244 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
30660284 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
30660312 GTCGAGACCT
Statistics
Matches: 315, Mismatches: 29, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
39 42 0.13
40 271 0.86
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:30660215 original size:159 final size:158
Alignment explanation
Indices: 30659925--30660311 Score: 596
Period size: 159 Copynumber: 2.4 Consensus size: 158
30659915 CCAGCATGAT
* * * * * **
30659925 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGAGGTTTAGCACGGATA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCG-GACTTAGC-CGGATA
* *
30659990 TATTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
64 CATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGG
*
30660055 GACTTAGTCCGGATACATCACTAGCACGAA
129 GACTTAGCCCGGATACATCACTAGCACGAA
30660085 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACTTAGTCCGGATAC
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACTTAG-CCGGATAC
*
30660150 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGG
65 ATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGG
* **
30660215 ACTTAGCCCGGGTACATTTCTAGCACGAA
130 ACTTAGCCCGGATACATCACTAGCACGAA
30660244 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT-
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTC-GGACTTAG-CCGGATA
30660308 CATC
64 CATC
30660312 GTCGAGACCT
Statistics
Matches: 210, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
159 151 0.72
160 59 0.28
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (158 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGACTTAGCCGGATACA
TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGA
CTTAGCCCGGATACATCACTAGCACGAA
Found at i:30664527 original size:47 final size:47
Alignment explanation
Indices: 30664473--30665153 Score: 1076
Period size: 47 Copynumber: 14.6 Consensus size: 47
30664463 ATATATTTGA
* *
30664473 ATGAATGTGAAAGCGTATATATATTGATAAGGCCTAATGG-CGATGTG
1 ATGAATGTGAAAGTGTATATAT-GTGATAAGGCCTAATGGCCGATGTG
* *
30664520 ATGAATGTGAAAGTGTATATATGTGAT-AGG-CGAATGGCC-A-ATG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
30664563 -TG-ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
*
30664610 ATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
30664656 A-GAATGTGAAAGTGTATATATTTGATAAGGCCTAATAGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
30664702 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
30664749 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
30664796 ATGAATGTGAAAGTGTATATATGTGATAAGGCCCAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
30664843 ATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
30664890 ATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
30664936 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
30664983 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
30665030 ATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * *
30665077 ATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
30665124 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
30665154 TCCCGAAGGG
Statistics
Matches: 593, Mismatches: 29, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
41 11 0.02
42 2 0.00
43 14 0.02
44 10 0.02
45 33 0.06
46 93 0.16
47 417 0.70
48 2 0.00
49 11 0.02
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Found at i:30664938 original size:234 final size:235
Alignment explanation
Indices: 30664473--30665153 Score: 1094
Period size: 234 Copynumber: 2.9 Consensus size: 235
30664463 ATATATTTGA
* *
30664473 ATGAATGTGAAAGCGTATATATATTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTA
1 ATGAATGTGAAAGTGTATATAT-GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
30664537 TATATGTGAT-AGG-CGAATGGCC-A-ATG-TG-ATGTGAAAGTGTATATATATGTGATAAGGCC
65 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
30664596 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATAGCCGATGTGA-GA
128 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATGTGATGA
*
30664659 ATGTGAAAGTGTATATATTTGATAAGGCCTAATAGCCAATGTG
193 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
30664702 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
30664767 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCCAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
*
30664832 TAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATGTGATGAATG
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATGTGATGAATG
* *
30664897 TG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
196 TGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
*
30664936 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
30665001 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAA
66 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
* * * * * *
30665066 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATG
131 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATGTGATGAATG
*
30665131 TGAAAGTGTATAAATGTGATAAG
196 TGAAAGTGTATATATGTGATAAG
30665154 TCCCGAAGGG
Statistics
Matches: 421, Mismatches: 21, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
228 16 0.04
229 55 0.13
230 3 0.01
231 8 0.02
232 1 0.00
233 56 0.13
234 245 0.58
235 37 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (235 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCGATGTGATGAATG
TGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTG
Found at i:30665356 original size:73 final size:74
Alignment explanation
Indices: 30665271--30665408 Score: 233
Period size: 73 Copynumber: 1.9 Consensus size: 74
30665261 CCGAGCTCTA
*
30665271 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGA-CCGATGACTACGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
30665335 TGCCCGGGT
66 TGCCCGGGT
* * *
30665344 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
30665409 CGTCTTGAGC
Statistics
Matches: 60, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
73 39 0.65
74 21 0.35
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (74 bp):
AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
TGCCCGGGT
Found at i:30665362 original size:37 final size:37
Alignment explanation
Indices: 30665271--30665408 Score: 224
Period size: 37 Copynumber: 3.8 Consensus size: 37
30665261 CCGAGCTCTA
* *
30665271 AAGACCCGATGACTACGTGTGGAGAGTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
*
30665308 AAGA-CCGATGACTACGTGTGGAGATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
30665344 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
30665381 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
30665409 CGTCTTGAGC
Statistics
Matches: 94, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 33 0.35
37 61 0.65
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:30666751 original size:46 final size:46
Alignment explanation
Indices: 30666683--30667013 Score: 269
Period size: 46 Copynumber: 7.1 Consensus size: 46
30666673 TTCGGGACTT
* * * * *
30666683 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGCCCT-
1 ATCACATATATACACTTTCACATTCATCAC-ATCGCCACTAGCCCTC
* * *
30666729 GTCACATATATACACTTTCACATTCATCACATCGCCATTAGGCCTC
1 ATCACATATATACACTTTCACATTCATCACATCGCCACTAGCCCTC
* * * * *
30666775 ATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCTTT
1 ATCACATATATACACTTTCACATTCATCACATC-GCCACTAGCCCTC
* * * *
30666822 ATCACAATATATACAATTTCACATTCATCACAT-GCCATTAGGCCTT
1 ATCAC-ATATATACACTTTCACATTCATCACATCGCCACTAGCCCTC
* * *
30666868 ATCACATATATATACACTTTCACATTCATCACATCGGCCATTAG-GCTT
1 ATCAC--ATATATACACTTTCACATTCATCACATC-GCCACTAGCCCTC
* * * * * *
30666916 ATCACATATATATATCCTTTCAAATT-ATCACATCGGCATTCG-CCTT
1 ATCACATATATACA--CTTTCACATTCATCACATCGCCACTAGCCCTC
* * *
30666962 ATCACATATATACACTTTCACATAT-ATCACATCGGCCATTAGGCCTT
1 ATCACATATATACACTTTCACAT-TCATCACATC-GCCACTAGCCCTC
30667009 ATCAC
1 ATCAC
30667014 TTTCACATTC
Statistics
Matches: 247, Mismatches: 27, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
44 8 0.03
45 19 0.08
46 111 0.45
47 58 0.23
48 43 0.17
49 8 0.03
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (46 bp):
ATCACATATATACACTTTCACATTCATCACATCGCCACTAGCCCTC
Found at i:30666973 original size:141 final size:141
Alignment explanation
Indices: 30666734--30667013 Score: 410
Period size: 141 Copynumber: 2.0 Consensus size: 141
30666724 GCCCTGTCAC
*
30666734 ATATATACACTTTCACATTCATCACATCGCCATTAGGCCTCATCACATATATACACTTTCACATT
1 ATATATACACTTTCACATTCATCACATCGCCATTAGGCCTCATCACATATATACACTTTCAAATT
* *
30666799 CATCACATCGGCTATTAGGCTTTATCACAATATATACAATTTCACAT-TCATCACAT-GCCATTA
66 CATCACATCGGCTATTACGCCTTATCAC-ATATATACAATTTCACATAT-ATCACATCGCCATTA
30666862 GGCCTTATCACAT
129 GGCCTTATCACAT
* *
30666875 ATATATACACTTTCACATTCATCACATCGGCCATTAGG-CTTATCACATATATATATCCTTTCAA
1 ATATATACACTTTCACATTCATCACATC-GCCATTAGGCCTCATCACATATATACA--CTTTCAA
*
30666939 ATT-ATCACATCGGC-ATT-CGCCTTATCACATATATACACTTTCACATATATCACATCGGCCAT
63 ATTCATCACATCGGCTATTACGCCTTATCACATATATACAATTTCACATATATCACATC-GCCAT
30667001 TAGGCCTTATCAC
127 TAGGCCTTATCAC
30667014 TTTCACATTC
Statistics
Matches: 127, Mismatches: 6, Indels: 12
0.88 0.04 0.08
Matches are distributed among these distances:
139 24 0.19
140 10 0.08
141 64 0.50
142 20 0.16
143 9 0.07
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (141 bp):
ATATATACACTTTCACATTCATCACATCGCCATTAGGCCTCATCACATATATACACTTTCAAATT
CATCACATCGGCTATTACGCCTTATCACATATATACAATTTCACATATATCACATCGCCATTAGG
CCTTATCACAT
Found at i:30667016 original size:37 final size:37
Alignment explanation
Indices: 30666974--30667050 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
30666964 CACATATATA
*
30666974 CACTTTCACATAT-ATCACATCGGCCATTAGGCCTT-AT
1 CACTTTCACAT-TCATCACATCGG-CATTAGGACTTAAT
30667011 CACTTTCACATTCATCACATCGGCATTAGGACTTAAT
1 CACTTTCACATTCATCACATCGGCATTAGGACTTAAT
30667048 CAC
1 CAC
30667051 ATAATTATAC
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
36 11 0.30
37 26 0.70
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (37 bp):
CACTTTCACATTCATCACATCGGCATTAGGACTTAAT
Found at i:30667179 original size:51 final size:54
Alignment explanation
Indices: 30667107--30667234 Score: 158
Period size: 51 Copynumber: 2.4 Consensus size: 54
30667097 CCTTACACAG
*
30667107 TATATACACTTTCAACATTCATCACCATTCGG-CAG-TAGGCCTTA-TCACATA
1 TATATACACTTTCAACATTCATCACCAATCGGCCAGATAGGCCTTATTCACATA
* *
30667158 TATATACA-TCTTC-ACATTTCATCATCAATCGGCCTGTATAGGCCTTATTCACATA
1 TATATACACT-TTCAACA-TTCATCACCAATCGGCCAG-ATAGGCCTTATTCACATA
30667213 TATATAACACTTTCAACATTCA
1 TATAT-ACACTTTCAACATTCA
30667235 CACATTCAGG
Statistics
Matches: 65, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
50 4 0.06
51 24 0.37
52 2 0.03
54 9 0.14
55 12 0.18
56 10 0.15
57 4 0.06
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (54 bp):
TATATACACTTTCAACATTCATCACCAATCGGCCAGATAGGCCTTATTCACATA
Found at i:30669531 original size:39 final size:40
Alignment explanation
Indices: 30669456--30669582 Score: 154
Period size: 39 Copynumber: 3.3 Consensus size: 40
30669446 TAACTCATTC
* * *
30669456 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
** *
30669496 AATGCCTTC-GGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
*
30669535 AAGGCCTTCGGGACTTAACCCGGAATT---AACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
*
30669572 AATACCTTCGG
1 AATGCCTTCGG
30669583 ATCTTAGTCC
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
37 18 0.24
39 32 0.42
40 26 0.34
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTGAAAACTCGCACA
Found at i:30669595 original size:37 final size:38
Alignment explanation
Indices: 30669456--30669635 Score: 152
Period size: 40 Copynumber: 4.6 Consensus size: 38
30669446 TAACTCATTC
* *
30669456 AATGCCTTCGGGACTTAACCCGG-ATTTTAAAACTCGCACG
1 AATGCCTTC-GGACTTAACCCGGAATTGT--AACTCGCACA
*
30669496 AATGCCTTCGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGACTTAACCCGGAATT-GTAACTCGCACA
*
30669535 AAGGCCTTCGGGACTTAACCCGGAA-T-TAACTCGCACA
1 AATGCCTTC-GGACTTAACCCGGAATTGTAACTCGCACA
* ** * * *
30669572 AATACCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACA
1 AATGCCTTCGGA-CTTAACCCGGA-ATTGTAAC-TCGCACA
*
30669613 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTC-GGACTTAACCCGGA
30669636 CAGCATTCAA
Statistics
Matches: 117, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
36 3 0.03
37 26 0.22
38 1 0.01
39 30 0.26
40 45 0.38
41 12 0.10
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (38 bp):
AATGCCTTCGGACTTAACCCGGAATTGTAACTCGCACA
Found at i:30677400 original size:40 final size:40
Alignment explanation
Indices: 30677348--30677476 Score: 158
Period size: 39 Copynumber: 3.3 Consensus size: 40
30677338 TAACTCATTC
*
30677348 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACA
* *
30677388 AATGCCTTCGGGACTTAACCCGGAATTGT--ATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTTAAAACTCGCACA
* *
30677427 AAGGCCTTC-GGACTTAACCCGGA-ATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACA
*
30677466 AATACCTTCGG
1 AATGCCTTCGG
30677477 ATCTTAGTCC
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
36 1 0.01
37 1 0.01
38 13 0.17
39 32 0.43
40 24 0.32
41 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACA
Found at i:30677410 original size:79 final size:78
Alignment explanation
Indices: 30677311--30677529 Score: 185
Period size: 78 Copynumber: 2.8 Consensus size: 78
30677301 CTCGTTCAAG
* * ** * *
30677311 TGCCTTCGGGACATAGCCCGGTCATAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATTT
1 TGCCTTCGGGACATAACCCGG-AATAGTAACTCACACAAAGGCCTTC-GGACTTAACCCGGA-AT
*
30677375 TAA-AACTCGCACGAA
63 TAATAACTCGCACAAA
* * * *
30677390 TGCCTTCGGGACTTAACCCGGAATTGTATCTCGCACAAAGGCCTTCGGACTTAACCCGGAATTAA
1 TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGACTTAACCCGGAATTAA
30677455 TAACTCGCACAAA
66 TAACTCGCACAAA
* * ** * * *
30677468 TACCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGA-ATAGTAACTCA-CACAAAGGCCTTC-GGACTTAACCCGGA
30677530 CAGCATTCAA
Statistics
Matches: 114, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
77 7 0.06
78 49 0.43
79 39 0.34
80 19 0.17
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (78 bp):
TGCCTTCGGGACATAACCCGGAATAGTAACTCACACAAAGGCCTTCGGACTTAACCCGGAATTAA
TAACTCGCACAAA
Found at i:30677489 original size:78 final size:80
Alignment explanation
Indices: 30677351--30677529 Score: 208
Period size: 78 Copynumber: 2.3 Consensus size: 80
30677341 CTCATTCAAT
* * * *
30677351 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
*
30677415 GT-A-TCTCGCACAAA
66 GTCACT-TAGCACAAA
**
30677429 GGCCTTC-GGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
30677491 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
*
30677509 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
30677530 CAGCATTCAA
Statistics
Matches: 86, Mismatches: 8, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
77 7 0.08
78 40 0.47
79 16 0.19
80 22 0.26
81 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:30679394 original size:194 final size:194
Alignment explanation
Indices: 30679062--30696259 Score: 32737
Period size: 194 Copynumber: 89.0 Consensus size: 194
30679052 GGCTGTCACA
* *
30679062 AATAATAAGTTGCTAGTAATTTTCTTAGGCAGCCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
*
30679127 TGAGCTTGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
* * * *
30679192 GGTGATACATGTGCTTTTAAAATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30679256 AATAATAAGTTGCTAAAAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
* * *
30679321 TGAGCTAGTTGGGCTCGCTATAGTGGAGTTACAGTTTGTAAAATGAATTAAGCTTTTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
* *
30679386 GATGATACATGTGCATATAACATGGTTTCAATGCTCCAAGACTGAAACTTGTCTTATGACCCTT-
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGA-CCTTC
* *
30679450 AATAATAAGTTGCTAATAATTTTCTTCGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTCCAAT
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTAC-AT
* *
30679515 G-GAGCTAGTTGGGCTCGCTATAGTGGAGTCACTATTTGTAAAATGAATTAAGATTCTTTGATGG
65 GTGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGG
*
30679579 TGATGATACATGTGCATATAACATGGTTTCCATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
130 TGATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
* * ** *
30679644 AATAATAAGTTGCTAGTAATTTTCTTAGGCAGCCTTCTAGGGGTGTAAACAAGTCAAGAAACATA
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
* *
30679709 TGAGCTTGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAGTTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGG-
* * *
30679774 TG-TGACACATGCGCATATAACATGGTTTCAATGCCCCAAGACTCGAACTTGTCTTATGACCTTC
130 TGATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30679838 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTTA-GGGTGTAAACAAGTCAAGTTCCAT
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTC-TAGGGGTGTAAACAAGTCAAGTTACAT
* * * *
30679902 GTGAGCTAGTTGGGCTCGCTACAGTGGAGTTACTGTTTGTAAAACGAATTAAGCTTTTTTGATGG
65 GTGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGG
*
30679967 TGATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTGAAACTTGTCTTATGACCCTT
130 TGATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGA-CCTT
30680032 -
194 C
*
30680032 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTGCATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30680097 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30680162 GATGATACTTGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
* * *
30680226 AATAATAAGTTGCTAATAATTTTCTTAGGCTGACTTCTA-GGGTGTAAACAAGTCAAGTTCCATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
*
30680290 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATTAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30680355 GATGATACATGTGCATATAACATGGTTTCCATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
* *
30680419 AATAATAAGTTGCTAGTAATTTTCTTAGGCAGCCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
*
30680484 TGAGCTTGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30680549 GGTGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30680613 AATAATAAGTTGCTAAAAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
*
30680678 TGAGCTAGTTGGGCTCGCTATAGTGGAGTAACTGTTT-TAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
* *
30680742 GATGATACATGTGCATATAACATGGTTTCAATGCTCCAAGACTGAAACTTGTCTTATGACCCTT-
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGA-CCTTC
30680806 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
*
30680871 TGAGCTAGTTGGGCTCGCTATAGT-GAGTCACAGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30680935 GATGATACATGTGCATATAACATGGTTTC-ATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
* * ** *
30680997 AATAATAAGTTGCTAGTAATTTTCTTAGGCAGCCTTCTAGGGGTGTAAACAAGTCAAGAAACATA
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
* *
30681062 TGAGCTTGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAGTTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30681127 GGTGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30681191 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTCCATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
* *
30681256 TGAGCTAGTTGGGCTCGCTATAGTGGAGTTACTGTTTGTAAAATGAATTAAGCTTTTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30681321 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTGAAACTTGTCTTATGACCCTT-
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGA-CCTTC
30681385 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTA-GGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30681449 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30681514 GATGATAC-T-TGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
** *
30681576 AATAATAAGTTGCTAATAATTTTCTTAGGTTGACTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30681641 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30681706 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30681770 AATAATAAGTTGCTAATAATTTTCTTAGGCAATCTTCTA-GGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30681834 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30681899 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30681963 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
* *
30682028 TGAGCTAGTTGGGCTCGCTATAGTGGAGTTACTGTTTGTAAAATGAATTAAGCTTTTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30682093 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTGAAACTTGTCTTATGACCCTT-
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGA-CCTTC
30682157 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30682222 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30682287 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30682351 AATAATAAGTTGCTAATAATTTTCTTAGGC--TCTTCTA-GGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30682413 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30682478 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30682541 AATAATAAGTTGCTAATAATTTTCTTAGGCAGCCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30682606 TGAGCTAGTTGGGCTCGCTATAGT-GAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
* *
30682670 G-GGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTGAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30682733 AATAATAAGTTGCTAAAAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30682798 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTT-TTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30682862 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCTT-
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30682924 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30682989 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30683054 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30683118 AATAATAAGTTGCTAATAATTTCCTTAGGCAG-CGTTCTAGGGGTGTAAACAAGTCAAGTTACAT
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTC-TTCTAGGGGTGTAAACAAGTCAAGTTACAT
* *
30683182 GTGAGCTAGTCGGGCTCGCTATAGTGGAGTTACTGTTTGTAAAATGAATTAAGCTT-TTTGATGG
65 GTGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGG
*
30683246 TGATGATACATGTGCATATAACATGGTTTCAATGCTCCAAGACTCAAACTTGTCTTATGACCCTT
130 TGATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGA-CCTT
30683311 -
194 C
30683311 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30683376 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30683441 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
* * *
30683505 AATAATAAGTTGCTAATAATTTTCTTAGGCTGACTTCTAGGGGTGTAAACAAGTCAAGTTCCATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30683570 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30683635 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30683699 AATAATAAGTTGCTAATAATTTCCTTAGGCAG-CGTTCTAGGGGTGTAAACAAGTCAAGTTACAT
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTC-TTCTAGGGGTGTAAACAAGTCAAGTTACAT
30683763 GTGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGG
65 GTGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGG
30683828 TGATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
130 TGATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30683893 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30683958 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30684023 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGTCCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30684086 AATAATAAGCTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30684151 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30684216 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30684280 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30684345 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30684410 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30684474 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30684539 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30684604 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30684668 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30684733 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30684798 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30684862 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30684927 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30684992 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30685055 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30685120 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30685185 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30685249 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30685314 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30685379 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30685443 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30685508 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30685573 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30685637 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30685702 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30685767 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30685831 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30685896 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30685961 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30686025 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30686090 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30686155 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30686219 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30686284 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30686349 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30686413 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30686478 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30686543 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30686607 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30686672 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30686737 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30686801 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30686866 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30686931 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30686995 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30687060 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30687125 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30687189 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30687254 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30687319 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30687383 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30687448 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30687513 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30687577 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30687642 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30687707 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30687770 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30687835 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30687900 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30687964 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30688029 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30688094 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30688158 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30688223 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30688288 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30688352 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30688417 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30688482 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30688546 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30688611 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30688676 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30688740 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30688805 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30688870 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30688934 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30688999 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30689064 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30689127 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30689192 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30689257 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30689321 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30689386 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30689451 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30689515 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30689580 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30689645 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30689709 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30689774 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30689839 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30689903 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30689968 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30690033 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30690097 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30690162 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30690227 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30690291 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30690356 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30690421 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30690485 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30690550 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30690615 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30690679 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30690744 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30690809 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30690873 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30690938 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30691003 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30691067 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30691132 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30691197 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30691261 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30691326 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30691391 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30691455 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30691520 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30691585 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30691649 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30691714 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30691779 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30691843 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30691908 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30691973 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30692037 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30692102 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30692167 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30692231 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30692296 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30692361 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30692425 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30692490 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30692555 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30692619 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30692684 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30692749 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30692812 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30692877 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30692942 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30693006 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30693071 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30693136 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30693200 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30693265 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30693330 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30693394 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30693459 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30693524 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30693588 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30693653 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30693718 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30693782 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30693847 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30693912 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30693975 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30694040 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30694105 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCCTT-
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGA-CCTTC
30694168 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30694233 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30694298 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30694362 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTCCATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
*
30694427 TGAGCTAGTTGGCCTCGCTATAGTGGAGTCACTG--TGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30694490 GATGATACATGTGCATATAACATGGTTTC-ATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
* *
30694552 AATAATAAGTTGCTAATAATTTTCTTAGGCTGACTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
* *
30694617 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTGGATGTT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30694682 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30694746 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
*
30694811 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTTTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30694876 GATGATACATGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30694939 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30695004 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30695069 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30695133 AATAATAAGTTGCTAGTAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
* *
30695198 TGAGCTAGTTGGG-TCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTTATGAT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30695262 GATGATACTTGTGCATATAACATGGTTTC-ATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30695325 AATAATAAGTTGCT-A-AATTTTCTTAGGCAG---TCTAGGGGTGTAAACAAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30695385 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30695450 GATGATAC-TGTGCATATAACATGGTTTCAATG-CCCAAGACTCAAACTTGTC-TATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30695511 AATAATAAGTTGCTAATAATTTTCTTAGGCAG-CTTCTAGGGGTGT-AACAAGTCAAGTTA-ATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
*
30695573 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATTAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
* * * *
30695638 GATGATACATGTGCATATAAGATGGTTTCCATGCCCCAAGACTCAAACTTGTCTAAGGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
* * *
30695702 AATAATATGTTGCTAGTAATTTTCTTAGGCA--CTTCTAGGGGTGTAAACAAGTCAAGTTCCATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
* *
30695765 TGAGCTAGTTGGGCTCGCTACAGTGGAGTCACTGTTTGTAAAATTAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
*
30695830 GATGATACATGTGCATATAAGATGGTTTCAATG-CCCAAGACTCAAACTTGTC-TATGA-CTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30695891 AATAATAAGTTGCTAATAATTTTCTTA-G--GT-TT-TAGGGGTGTAAACTAGTCAAGTT-CATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30695950 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTG-TTGT-AAATGAA-TAA-----TTT--T--T
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30696003 GATG-----TGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
*
30696062 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACCAGTCAAGTTACATG
1 AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
30696127 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
66 TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
30696192 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
131 GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
30696256 AATA
1 AATA
30696260 GAGTCATGTT
Statistics
Matches: 16716, Mismatches: 195, Indels: 186
0.98 0.01 0.01
Matches are distributed among these distances:
168 23 0.00
169 19 0.00
170 5 0.00
171 31 0.00
172 1 0.00
173 5 0.00
174 2 0.00
175 3 0.00
176 22 0.00
177 41 0.00
178 4 0.00
179 7 0.00
180 3 0.00
182 3 0.00
183 6 0.00
184 4 0.00
185 40 0.00
186 46 0.00
187 86 0.01
188 151 0.01
189 70 0.00
190 254 0.02
191 533 0.03
192 689 0.04
193 2668 0.16
194 11976 0.72
195 24 0.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (194 bp):
AATAATAAGTTGCTAATAATTTTCTTAGGCAGTCTTCTAGGGGTGTAAACAAGTCAAGTTACATG
TGAGCTAGTTGGGCTCGCTATAGTGGAGTCACTGTTTGTAAAATGAATTAAGCTTCTTTGATGGT
GATGATACATGTGCATATAACATGGTTTCAATGCCCCAAGACTCAAACTTGTCTTATGACCTTC
Found at i:30704594 original size:21 final size:21
Alignment explanation
Indices: 30704569--30704619 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
30704559 TTCTTTTCAG
30704569 CAACTTCTTCTTCTTA-AGCAAT
1 CAACTTCTTCTTC-TACAGC-AT
30704591 -AACTTCTTCTTCTACAGCAT
1 CAACTTCTTCTTCTACAGCAT
30704611 CAACTTCTT
1 CAACTTCTT
30704620 TCTTAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.25, C:0.29, G:0.04, T:0.41
Consensus pattern (21 bp):
CAACTTCTTCTTCTACAGCAT
Found at i:30712087 original size:25 final size:25
Alignment explanation
Indices: 30712055--30712123 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
30712045 TGCCCATTTC
30712055 ACAGCTCGTGTGAGCATTTACA-ATT
1 ACAGCTCGTGTGAGCATTTACAGA-T
30712080 ACAGCTCGTGTGAGCATTTACAGAT
1 ACAGCTCGTGTGAGCATTTACAGAT
* *
30712105 ACAACTCGTGTGAACATTT
1 ACAGCTCGTGTGAGCATTT
30712124 TTCCATGTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 40 0.98
26 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATTTACAGAT
Found at i:30719389 original size:30 final size:30
Alignment explanation
Indices: 30719332--30719393 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
30719322 GCTTTTTAAA
* * *
30719332 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAACAGGCACCAAATTTTT
30719362 AATATTTACAAAAACA-GCAACCAAATTTTT
1 AATATTTACAAAAACAGGC-ACCAAATTTTT
30719392 AA
1 AA
30719394 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAACAGGCACCAAATTTTT
Found at i:30729494 original size:20 final size:20
Alignment explanation
Indices: 30729469--30729536 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
30729459 GAGTGTATAA
30729469 CAGG-GCACAAATGTGCAAT
1 CAGGAGCACAAATGTGCAAT
* ** *
30729488 CAGGGGCAC-TGTAGTGCAAA
1 CAGGAGCACAAAT-GTGCAAT
* *
30729508 CAAGAGCACAAATGTGCTAT
1 CAGGAGCACAAATGTGCAAT
30729528 CAGGAGCAC
1 CAGGAGCAC
30729537 TATAGTGCTA
Statistics
Matches: 36, Mismatches: 10, Indels: 5
0.71 0.20 0.10
Matches are distributed among these distances:
19 5 0.14
20 30 0.83
21 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.28, T:0.15
Consensus pattern (20 bp):
CAGGAGCACAAATGTGCAAT
Found at i:30729517 original size:40 final size:40
Alignment explanation
Indices: 30729473--30729584 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 40
30729463 GTATAACAGG
* *
30729473 GCACAAATGTGCAATCAGGGGCACTGTAGTGCAAACAAGA
1 GCACAAATGTGCTATCAGGAGCACTGTAGTGCAAACAAGA
* *
30729513 GCACAAATGTGCTATCAGGAGCACTATAGTGCTAACAAGA
1 GCACAAATGTGCTATCAGGAGCACTGTAGTGCAAACAAGA
* * *
30729553 GTACGAAA-GTACTATCAGGAGCACCGTAGTGC
1 GCAC-AAATGTGCTATCAGGAGCACTGTAGTGC
30729585 TAATAGGATA
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 60 0.95
41 3 0.05
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.18
Consensus pattern (40 bp):
GCACAAATGTGCTATCAGGAGCACTGTAGTGCAAACAAGA
Found at i:30729544 original size:20 final size:20
Alignment explanation
Indices: 30729481--30729586 Score: 61
Period size: 20 Copynumber: 5.3 Consensus size: 20
30729471 GGGCACAAAT
* * *
30729481 GTGCAATCAGGGGCACTGTA
1 GTGCTATCAGGAGCACTATA
* * * *
30729501 GTGCAAACAAGAGCAC-AAA
1 GTGCTATCAGGAGCACTATA
30729520 TGTGCTATCAGGAGCACTATA
1 -GTGCTATCAGGAGCACTATA
* * * * *
30729541 GTGCTAACAAGAGTACGAAA
1 GTGCTATCAGGAGCACTATA
* **
30729561 GTACTATCAGGAGCACCGTA
1 GTGCTATCAGGAGCACTATA
30729581 GTGCTA
1 GTGCTA
30729587 ATAGGATAAG
Statistics
Matches: 62, Mismatches: 22, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
19 1 0.02
20 59 0.95
21 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (20 bp):
GTGCTATCAGGAGCACTATA
Found at i:30734038 original size:19 final size:19
Alignment explanation
Indices: 30734014--30734053 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
30734004 ATAAAAGAAA
30734014 ATTATATTAAGTGGTTTTG
1 ATTATATTAAGTGGTTTTG
30734033 ATTATATTAAGTGGTTTTG
1 ATTATATTAAGTGGTTTTG
30734052 AT
1 AT
30734054 CATCATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.20, T:0.53
Consensus pattern (19 bp):
ATTATATTAAGTGGTTTTG
Found at i:30740897 original size:57 final size:58
Alignment explanation
Indices: 30740786--30740900 Score: 151
Period size: 57 Copynumber: 2.0 Consensus size: 58
30740776 ATTTAGCTTA
* * * ** *
30740786 TTAACTAAAATTAATTACGAGTCCAAGTTATATACGTGGGCCTTACGGTTACTCAAGT
1 TTAACTAAAATTAATTAAGAGTCCAAGATACATACGTGGGCCTTAAAGTGACTCAAGT
* *
30740844 TTAA-TAAAATTAATTAAGAGTCCAAGATACATATGTGGGTCTTAAAGTGACTCAAGT
1 TTAACTAAAATTAATTAAGAGTCCAAGATACATACGTGGGCCTTAAAGTGACTCAAGT
30740901 AGGGCAAAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
57 45 0.92
58 4 0.08
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (58 bp):
TTAACTAAAATTAATTAAGAGTCCAAGATACATACGTGGGCCTTAAAGTGACTCAAGT
Found at i:30749732 original size:169 final size:169
Alignment explanation
Indices: 30749453--30749786 Score: 623
Period size: 169 Copynumber: 2.0 Consensus size: 169
30749443 GGTTGTACAC
*
30749453 TTTACTATATTACAATTTGACCTGTATGCTTGCGGACACCGCCTATTTAATTTAATATATTTTTG
1 TTTACTATATTACAATTTGACCTGTATGCTTGCAGACACCGCCTATTTAATTTAATATATTTTTG
*
30749518 GTGTGGTATTTTACTATAAATGATAACACGTTTATAGGCGGTCAACAACGACACCAACAACTTGA
66 GTGTGATATTTTACTATAAATGATAACACGTTTATAGGCGGTCAACAACGACACCAACAACTTGA
*
30749583 CCACCTCCAAACGTGTTAACGTTTGACTAGAAATATATT
131 CCACCTCCAAACGTGCTAACGTTTGACTAGAAATATATT
*
30749622 TTTACTATATTACAATTTGACCTGTATGCTTGTAGACACCGCCTATTTAATTTAATATATTTTTG
1 TTTACTATATTACAATTTGACCTGTATGCTTGCAGACACCGCCTATTTAATTTAATATATTTTTG
30749687 GTGTGATATTTTACTATAAATGATAACACGTTTATAGGCGGTCAACAACGACACCAACAACTTGA
66 GTGTGATATTTTACTATAAATGATAACACGTTTATAGGCGGTCAACAACGACACCAACAACTTGA
*
30749752 CCACCTCCAAACGTGCTAATGTTTGACTAGAAATA
131 CCACCTCCAAACGTGCTAACGTTTGACTAGAAATA
30749787 ACTACACCAA
Statistics
Matches: 160, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
169 160 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (169 bp):
TTTACTATATTACAATTTGACCTGTATGCTTGCAGACACCGCCTATTTAATTTAATATATTTTTG
GTGTGATATTTTACTATAAATGATAACACGTTTATAGGCGGTCAACAACGACACCAACAACTTGA
CCACCTCCAAACGTGCTAACGTTTGACTAGAAATATATT
Found at i:30750691 original size:45 final size:45
Alignment explanation
Indices: 30750641--30750754 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
30750631 TTAGTTAGGG
* * ** *
30750641 AATGGTATTGGTTTTGGTATGAAATGGGGTTTGGTATAGATACGA
1 AATGGTATAGGTTTTGGTACGAAATGAAGTTTGGTATAGACACGA
* * * *
30750686 AATGGTATAGGTTTTGGTACAAAATGAATTTTGGTGTAGGCACGA
1 AATGGTATAGGTTTTGGTACGAAATGAAGTTTGGTATAGACACGA
*
30750731 AAGGGTATAGGTTTTGGTACGAAA
1 AATGGTATAGGTTTTGGTACGAAA
30750755 ATGGATCAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 58 1.00
ACGTcount: A:0.30, C:0.04, G:0.32, T:0.34
Consensus pattern (45 bp):
AATGGTATAGGTTTTGGTACGAAATGAAGTTTGGTATAGACACGA
Found at i:30751417 original size:20 final size:20
Alignment explanation
Indices: 30751392--30751436 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
30751382 TAAATTCACA
30751392 TAATTAAAACT-AGACACAAT
1 TAATT-AAACTAAGACACAAT
**
30751412 TAATTAAGTTAAGACACAAT
1 TAATTAAACTAAGACACAAT
30751432 TAATT
1 TAATT
30751437 CGGTTAGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (20 bp):
TAATTAAACTAAGACACAAT
Found at i:30756082 original size:26 final size:27
Alignment explanation
Indices: 30756053--30756103 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
30756043 TTTGCCTCTT
*
30756053 TTTTCTCAATTTTCTTTT-CTTTTTGA
1 TTTTCACAATTTTCTTTTGCTTTTTGA
**
30756079 TTTTCACTCTTTTCTTTTGCTTTTT
1 TTTTCACAATTTTCTTTTGCTTTTT
30756104 CTCTTGATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.08, C:0.18, G:0.04, T:0.71
Consensus pattern (27 bp):
TTTTCACAATTTTCTTTTGCTTTTTGA
Found at i:30758229 original size:12 final size:12
Alignment explanation
Indices: 30758209--30758250 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
30758199 TTTTTTTTAA
30758209 TTTCAAATTTTT
1 TTTCAAATTTTT
*
30758221 TTTCGAATTTTT
1 TTTCAAATTTTT
*
30758233 TTGTTAAATTTTT
1 TT-TCAAATTTTT
30758246 TTTCA
1 TTTCA
30758251 CATACCTATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.67
Consensus pattern (12 bp):
TTTCAAATTTTT
Found at i:30758476 original size:22 final size:22
Alignment explanation
Indices: 30758451--30758564 Score: 102
Period size: 22 Copynumber: 5.1 Consensus size: 22
30758441 TTAGTTAGGG
30758451 AATGGTATTGGTTTTGGTACGA
1 AATGGTATTGGTTTTGGTACGA
** * * *
30758473 AATGGGGCTTGGTATAGGTACAA
1 AAT-GGTATTGGTTTTGGTACGA
*
30758496 AATGGTATAGGTTTTGGTACGA
1 AATGGTATTGGTTTTGGTACGA
* * * *
30758518 AATGGATTTTGGTGTAGGCACGA
1 AATGG-TATTGGTTTTGGTACGA
* *
30758541 AAGGGTATAGGTTTTGGTACGA
1 AATGGTATTGGTTTTGGTACGA
30758563 AA
1 AA
30758565 ATGTATCAAA
Statistics
Matches: 68, Mismatches: 22, Indels: 4
0.72 0.23 0.04
Matches are distributed among these distances:
22 35 0.51
23 33 0.49
ACGTcount: A:0.28, C:0.06, G:0.33, T:0.32
Consensus pattern (22 bp):
AATGGTATTGGTTTTGGTACGA
Found at i:30758501 original size:45 final size:45
Alignment explanation
Indices: 30758451--30758564 Score: 156
Period size: 45 Copynumber: 2.5 Consensus size: 45
30758441 TTAGTTAGGG
* * *
30758451 AATGGTATTGGTTTTGGTACGAAATGGGGCTTGGTATAGGTACAA
1 AATGGTATAGGTTTTGGTACGAAATGGAGCTTGGTATAGGCACAA
** * *
30758496 AATGGTATAGGTTTTGGTACGAAATGGATTTTGGTGTAGGCACGA
1 AATGGTATAGGTTTTGGTACGAAATGGAGCTTGGTATAGGCACAA
*
30758541 AAGGGTATAGGTTTTGGTACGAAA
1 AATGGTATAGGTTTTGGTACGAAA
30758565 ATGTATCAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 61 1.00
ACGTcount: A:0.28, C:0.06, G:0.33, T:0.32
Consensus pattern (45 bp):
AATGGTATAGGTTTTGGTACGAAATGGAGCTTGGTATAGGCACAA
Found at i:30758570 original size:22 final size:23
Alignment explanation
Indices: 30758451--30758567 Score: 80
Period size: 23 Copynumber: 5.2 Consensus size: 23
30758441 TTAGTTAGGG
*
30758451 AATGGTATTGGTTTTGGTACG-A
1 AATGGTATAGGTTTTGGTACGAA
** * * *
30758473 AATGGGGCTTGGTATAGGTAC-AA
1 AAT-GGTATAGGTTTTGGTACGAA
30758496 AATGGTATAGGTTTTGGTACG-A
1 AATGGTATAGGTTTTGGTACGAA
* * * * *
30758518 AATGGATTTTGGTGTAGGCACG-A
1 AATGG-TATAGGTTTTGGTACGAA
*
30758541 AAGGGTATAGGTTTTGGTACGAA
1 AATGGTATAGGTTTTGGTACGAA
30758564 AATG
1 AATG
30758568 TATCAAAAAG
Statistics
Matches: 69, Mismatches: 21, Indels: 9
0.70 0.21 0.09
Matches are distributed among these distances:
22 32 0.46
23 37 0.54
ACGTcount: A:0.28, C:0.06, G:0.33, T:0.32
Consensus pattern (23 bp):
AATGGTATAGGTTTTGGTACGAA
Found at i:30759481 original size:20 final size:20
Alignment explanation
Indices: 30759456--30759500 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
30759446 TAAATTCACA
30759456 TAATTAAAACT-AGACACAAT
1 TAATT-AAACTAAGACACAAT
**
30759476 TAATTAAGTTAAGACACAAT
1 TAATTAAACTAAGACACAAT
30759496 TAATT
1 TAATT
30759501 CGGTTAGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.51, C:0.11, G:0.07, T:0.31
Consensus pattern (20 bp):
TAATTAAACTAAGACACAAT
Found at i:30767177 original size:172 final size:172
Alignment explanation
Indices: 30766669--30767190 Score: 873
Period size: 174 Copynumber: 3.0 Consensus size: 172
30766659 GAGAAATACT
* * *
30766669 TGATCCATGCTAATTTGGGAGGTCAAAATCATATCTTTGATCCTGGAGATAGTTTTGGCGCACAA
1 TGATGCATGCTGATTTGGGAGGTCAAAATCATATATTTGATCCTGGAGATAGTTTTGGCGCACAA
* **
30766734 GAAAGCTTAGGTAAGTATTTTATTTATTTTATTGTTATTTAATATAATCTTTTTTCTTTCTGTGC
66 GAAAGCTTAGGTAAGTATTTTATTTATTTTATTGTTATTTAATCTAATCCCTTTTCTTTCTGTGC
30766799 AACTGAAGATTTGAGGATGAATCTTCTTGAGGAATGGAGGAA
131 AACTGAAGATTTGAGGATGAATCTTCTTGAGGAATGGAGGAA
* *
30766841 TGATGCATGCTGATTTGGGAGGTCAAAATCATATATTTGATCCTAGAGATAGTTTTTTGGTGCAC
1 TGATGCATGCTGATTTGGGAGGTCAAAATCATATATTTGATCCTGGAGATAG--TTTTGGCGCAC
*
30766906 AAGAAAGCTTAGGTAAGTATGTTATTTATTTTATTGTTATTTAATCTAATCCCTTTTCTTTCTGT
64 AAGAAAGCTTAGGTAAGTATTTTATTTATTTTATTGTTATTTAATCTAATCCCTTTTCTTTCTGT
*
30766971 GCAACTGAAGATTTAAGGATGAATCTTCTTGAGGAATGGAGGAA
129 GCAACTGAAGATTTGAGGATGAATCTTCTTGAGGAATGGAGGAA
30767015 TGATGCATGCTGATTTGGGAGGTCAAAATCATATATTTGATCCTGGAGATAGTTTTGGCGCACAA
1 TGATGCATGCTGATTTGGGAGGTCAAAATCATATATTTGATCCTGGAGATAGTTTTGGCGCACAA
* *
30767080 GAAAGCTTAGGTAAGTATTTTATTCATTTTATTGTTATTTAATCTAATCCCTTTTCTTTCTATGC
66 GAAAGCTTAGGTAAGTATTTTATTTATTTTATTGTTATTTAATCTAATCCCTTTTCTTTCTGTGC
* * * * *
30767145 AACTGACGGTTCGAGGATGAATCTTTTTGAGGAATGGGGGAA
131 AACTGAAGATTTGAGGATGAATCTTCTTGAGGAATGGAGGAA
30767187 TGAT
1 TGAT
30767191 ACGAGTCTCA
Statistics
Matches: 327, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
172 162 0.50
174 165 0.50
ACGTcount: A:0.28, C:0.11, G:0.22, T:0.39
Consensus pattern (172 bp):
TGATGCATGCTGATTTGGGAGGTCAAAATCATATATTTGATCCTGGAGATAGTTTTGGCGCACAA
GAAAGCTTAGGTAAGTATTTTATTTATTTTATTGTTATTTAATCTAATCCCTTTTCTTTCTGTGC
AACTGAAGATTTGAGGATGAATCTTCTTGAGGAATGGAGGAA
Found at i:30767953 original size:29 final size:29
Alignment explanation
Indices: 30767921--30767976 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
30767911 CTTTTTTGAG
*
30767921 TTTATAAA-TTCTCTTTGAGTTTTTTTTCT
1 TTTATAAATTTCTC-TTGAGTTTCTTTTCT
*
30767950 TTTATGAATTTCTCTTGAGTTTCTTTT
1 TTTATAAATTTCTCTTGAGTTTCTTTT
30767977 AGAATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.16, C:0.11, G:0.09, T:0.64
Consensus pattern (29 bp):
TTTATAAATTTCTCTTGAGTTTCTTTTCT
Found at i:30771679 original size:25 final size:25
Alignment explanation
Indices: 30771615--30771679 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
30771605 TAGACAACCA
* ****
30771615 CAATGGTAATTTTTTTGAATGTTGG
1 CAATGGTAATTTTTTTGAAGGGCCC
**
30771640 CAATGGTAAAATTTTTGAAGGGCCC
1 CAATGGTAATTTTTTTGAAGGGCCC
30771665 CAATGGTAATTTTTT
1 CAATGGTAATTTTTT
30771680 CCTATAAATA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.42
Consensus pattern (25 bp):
CAATGGTAATTTTTTTGAAGGGCCC
Found at i:30773265 original size:16 final size:17
Alignment explanation
Indices: 30773231--30773274 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
30773221 TTAAAATTTA
30773231 TAAAATATTAAATAAAAT
1 TAAAA-ATTAAATAAAAT
30773249 TAAAAATTAAA-AAAAT
1 TAAAAATTAAATAAAAT
*
30773265 TAATAATTAA
1 TAAAAATTAA
30773275 TAATCATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 14 0.56
17 6 0.24
18 5 0.20
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
TAAAAATTAAATAAAAT
Found at i:30773564 original size:37 final size:37
Alignment explanation
Indices: 30773511--30773591 Score: 117
Period size: 37 Copynumber: 2.2 Consensus size: 37
30773501 ATCCAATTAA
*
30773511 AAAATGTGTATCAATTATTTTATTACATGTGTAACCT
1 AAAAGGTGTATCAATTATTTTATTACATGTGTAACCT
* * * *
30773548 AAAAGGTGTATTAATTATTTTCTTACATGTGTAGCTT
1 AAAAGGTGTATCAATTATTTTATTACATGTGTAACCT
30773585 AAAAGGT
1 AAAAGGT
30773592 TTAAATAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.42
Consensus pattern (37 bp):
AAAAGGTGTATCAATTATTTTATTACATGTGTAACCT
Found at i:30773945 original size:20 final size:20
Alignment explanation
Indices: 30773901--30773946 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
30773891 TTTTCTTGAA
* *
30773901 ATTTTTTAATTTTATTTACT
1 ATTTTTTAATTTTATATAAT
*
30773921 ATTTTATAATTTTA-ATAAT
1 ATTTTTTAATTTTATATAAT
30773940 ATTTTTT
1 ATTTTTT
30773947 TACAAATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTTTTAATTTTATATAAT
Found at i:30774664 original size:28 final size:30
Alignment explanation
Indices: 30774606--30774682 Score: 122
Period size: 28 Copynumber: 2.6 Consensus size: 30
30774596 AAAATGCTTT
30774606 TAAAATTATTAAAATTATTTTTTTGAAATA
1 TAAAATTATTAAAATTATTTTTTTGAAATA
*
30774636 TAAAATTATT-GAATTA-TTTTTTGAAATA
1 TAAAATTATTAAAATTATTTTTTTGAAATA
*
30774664 TAAAATTAATAAAATTATT
1 TAAAATTATTAAAATTATT
30774683 AAATTATTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 21 0.50
29 10 0.24
30 11 0.26
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (30 bp):
TAAAATTATTAAAATTATTTTTTTGAAATA
Found at i:30774899 original size:28 final size:28
Alignment explanation
Indices: 30774868--30774930 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
30774858 ATCAAACTTA
30774868 AAAAATTGGGTTTTCGAAACCTATTATT
1 AAAAATTGGGTTTTCGAAACCTATTATT
* * * * *
30774896 AAAACA-CGGGTTTTTGAAACTTGTTTTT
1 AAAA-ATTGGGTTTTCGAAACCTATTATT
30774924 AAAAATT
1 AAAAATT
30774931 AGCCTTCACC
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
27 1 0.04
28 25 0.93
29 1 0.04
ACGTcount: A:0.37, C:0.10, G:0.14, T:0.40
Consensus pattern (28 bp):
AAAAATTGGGTTTTCGAAACCTATTATT
Done.