Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2002
Parameters: 2 7 7 80 10 50 1000
Length:  31460

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1665--1694
15
1.9
16
93
6
53
66
3
23
6
1.30
2186--2215
16
1.9
15
93
6
51
20
3
33
43
1.68
3098--3152
20
2.8
20
88
0
83
25
29
16
29
1.97
5017--5063
23
2.1
23
84
7
62
51
12
4
31
1.59
5898--5932
18
1.9
18
88
0
52
17
25
0
57
1.40
5913--5967
24
2.3
23
81
3
65
10
21
0
67
1.21
6492--6545
20
2.7
20
82
0
63
24
20
18
37
1.94
6492--6565
30
2.5
30
86
8
98
21
20
18
39
1.93
6492--6556
20
3.2
20
71
16
53
23
21
16
38
1.93
12892--12932
17
2.4
18
80
8
50
14
24
4
56
1.58
15168--15203
12
2.8
13
87
4
56
13
11
2
72
1.23
22255--22350
30
3.2
30
72
10
99
28
26
17
28
1.98
25007--25068
5
12.0
5
76
19
56
75
1
19
3
1.02
25007--25068
26
2.4
26
81
5
81
75
1
19
3
1.02
24995--25070
31
2.5
30
73
23
77
73
2
19
3
1.11
25116--25146
12
2.6
12
100
0
62
45
12
16
25
1.83
27289--27385
30
3.2
30
75
2
106
27
26
16
28
1.97
29873--29906
12
2.7
13
90
4
52
8
5
5
79
1.05

Tables:   1

The End!