genome.fa.s2128.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3188
Parameters: 2 7 7 80 10 50 1000
Length:  35448

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--93	45	2.0	47	87	8	136	33	8	27	30	1.87
71--116	22	2.0	23	95	4	85	32	8	32	26	1.87
74--116	23	1.9	22	95	4	68	34	4	32	27	1.78
25--162	68	2.0	69	88	6	210	33	8	28	28	1.87
93--410	93	3.4	93	90	3	489	32	8	30	28	1.87
93--410	46	6.8	47	90	5	493	32	8	30	28	1.87
1800--2140	40	8.6	40	88	4	494	23	21	28	26	1.99
1800--2140	79	4.3	79	88	4	483	23	21	28	26	1.99
5990--6660	47	13.6	47	78	12	555	32	8	29	29	1.86
5990--6194	96	2.2	94	87	1	284	33	8	27	29	1.87
6171--6218	24	2.0	24	95	0	87	31	8	33	27	1.86
6122--6265	71	2.0	71	86	2	200	31	9	31	28	1.88
6073--6314	120	2.0	119	87	3	342	32	8	29	29	1.87
6026--6361	167	2.0	167	94	0	591	32	8	28	30	1.86
6195--6660	143	3.3	142	94	0	756	32	8	29	29	1.86
6193--6660	94	4.9	94	92	1	729	32	8	29	29	1.86
10520--10695	51	3.5	51	86	6	225	26	15	30	27	1.96
26184--26282	42	2.3	42	82	5	128	34	23	16	26	1.95
26173--26321	43	3.5	42	79	8	142	33	25	16	24	1.95
29405--29922	47	11.1	47	93	2	767	31	9	30	28	1.89
29405--29878	139	3.4	140	92	2	776	31	9	29	28	1.89
30040--30118	37	2.1	37	90	0	122	24	18	31	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31954--32056	43	2.4	43	98	0	197	23	15	34	26	1.94
32038--32111	29	2.6	29	89	4	105	25	16	32	25	1.96
32421--32572	39	3.9	40	80	9	170	22	23	29	25	1.99

Tables:   1

The End!