Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1475
Parameters: 2 7 7 80 10 50 1000
Length:  48706

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4798--4832
15
2.2
16
90
5
54
0
60
8
31
1.27
5256--5653
48
8.2
47
80
13
434
3
37
29
30
1.73
5252--5631
149
2.6
143
80
14
413
3
36
29
30
1.74
7800--8082
41
7.0
40
78
15
271
4
39
30
25
1.75
7801--8039
83
3.0
78
83
13
292
3
41
29
25
1.71
8042--8113
36
1.9
38
86
5
103
12
27
31
27
1.93
11698--12421
47
15.4
47
96
2
1280
31
8
29
29
1.87
11698--12421
143
5.1
141
96
2
1280
31
8
29
29
1.87
12539--12616
36
2.1
37
90
2
122
24
19
30
25
1.98
15038--15295
120
2.2
120
81
8
287
26
21
26
25
1.99
15038--15262
40
5.7
40
89
4
289
25
21
26
26
2.00
26985--27034
23
2.2
23
86
13
68
42
20
14
24
1.88
28223--28248
10
2.6
10
100
0
52
42
23
0
34
1.54
30676--30858
79
2.3
81
84
7
232
24
22
27
25
2.00
30677--30860
40
4.6
40
83
9
216
23
22
28
25
2.00
30729--30893
79
2.1
79
84
6
210
25
21
27
25
1.99
38316--38497
40
4.6
39
82
9
199
24
22
28
24
1.99
38366--38530
79
2.1
79
83
6
201
25
21
27
24
1.99
40335--40512
27
6.6
27
82
3
115
29
28
15
26
1.96
40356--40511
82
1.9
81
88
3
233
29
28
15
26
1.96
40335--40511
54
3.3
54
81
6
205
29
28
15
26
1.96

Tables:   1

The End!