genome.fa.s2188.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2929
Parameters: 2 7 7 80 10 50 1000
Length:  48495

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1682--1936	39	6.7	37	85	8	286	24	21	28	25	1.99
9671--9893	39	5.7	40	85	8	266	25	22	27	24	2.00
9671--9893	79	2.8	81	84	9	282	25	22	27	24	2.00
9671--9926	79	3.3	79	81	10	217	26	21	27	24	1.99
13502--13546	13	3.4	13	81	6	63	15	11	4	68	1.34
13429--13810	100	3.9	98	80	11	412	26	16	17	38	1.91
13736--14297	73	7.6	73	84	5	691	31	16	19	31	1.94
13716--14327	148	4.1	147	86	3	725	30	16	19	33	1.94
13716--14327	75	8.3	75	83	4	733	30	16	19	33	1.94
13736--14327	221	2.7	222	89	2	872	30	16	19	32	1.95
14296--14773	91	5.3	88	80	7	457	26	16	18	38	1.92
14398--14430	14	2.4	14	100	0	66	18	9	6	66	1.40
14254--14773	180	2.9	177	81	8	565	27	16	18	36	1.93
15455--15523	30	2.3	30	92	0	120	26	50	5	17	1.68
16065--16137	25	2.8	26	79	6	85	36	6	2	53	1.42
16153--16260	22	4.9	22	70	15	71	30	6	5	57	1.47
16159--16245	24	3.5	24	77	12	70	31	5	5	57	1.46
16202--16260	23	2.8	20	72	16	57	32	6	5	55	1.48
16375--16409	16	2.3	15	90	5	52	31	2	2	62	1.24
18003--18029	13	2.1	13	100	0	54	29	22	11	37	1.89
20275--20308	10	3.3	11	88	12	54	29	0	23	47	1.52
23546--23619	29	2.6	29	89	4	105	25	16	32	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26579--26636	26	2.2	27	90	3	91	29	15	27	27	1.96
28266--28343	29	2.7	28	84	11	104	25	15	30	28	1.96
28296--28797	174	2.9	174	95	0	923	29	14	24	31	1.95
30212--30426	48	4.5	48	87	0	295	25	18	26	30	1.98
30382--30469	42	2.1	42	83	8	108	26	17	25	31	1.97
33755--33799	20	2.3	20	88	3	65	28	17	28	24	1.97
39818--39900	42	2.0	42	80	4	96	28	26	18	26	1.98

Tables:   1

The End!