genome.fa.s2196.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1646
Parameters: 2 7 7 80 10 50 1000
Length:  18810

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271--647	193	2.0	192	84	4	492	25	15	19	38	1.92
461--1789	301	4.6	290	82	7	1356	26	16	22	34	1.95
929--1776	282	3.0	283	84	4	1088	25	18	22	33	1.97
1825--3117	285	4.4	288	83	5	1374	27	17	22	33	1.96
3176--4471	303	4.4	289	81	8	1250	27	17	22	33	1.96
3647--4488	282	3.0	281	83	5	1006	26	18	21	33	1.97
5002--5853	284	3.0	283	83	2	1019	26	18	21	33	1.96
5707--6087	195	2.0	195	84	2	498	26	15	19	38	1.91
5900--7248	283	4.6	300	82	6	1429	27	17	21	33	1.95
7267--8614	302	4.6	300	82	6	1423	27	17	21	33	1.95
8443--8808	194	1.9	194	85	2	511	25	16	18	38	1.92
8633--9983	304	4.6	301	83	5	1474	27	17	21	34	1.95
8801--9948	283	4.0	281	82	7	1235	26	17	22	33	1.96
10002--11349	284	4.6	301	80	7	1395	27	17	21	33	1.95
11367--12710	301	4.6	299	81	8	1405	27	16	21	34	1.95
11836--12668	282	2.9	280	84	4	1057	26	18	22	32	1.97
12731--14076	281	4.6	299	82	7	1409	27	16	21	33	1.95
14097--15408	302	4.5	282	80	7	1300	27	17	21	33	1.96
15464--16807	302	4.6	299	81	6	1345	27	17	21	34	1.95
15932--16772	285	3.0	279	84	3	1024	26	18	21	33	1.97
16633--17014	195	2.0	195	86	3	536	25	16	19	38	1.92
16828--18179	282	4.6	300	80	8	1339	27	16	21	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18591--18731	72	2.0	72	92	0	237	36	8	14	41	1.76

Tables:   1

The End!