Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 111 of 172
Found at i:31897446 original size:22 final size:22
Alignment explanation
Indices: 31897420--31897467 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
31897410 TATAGCATTA
*
31897420 TATATTATG-ATTTTAGTAAAT
1 TATATTAAGAATTTTAGTAAAT
*
31897441 TCATA-TAAGAATTTTATTAAAT
1 T-ATATTAAGAATTTTAGTAAAT
31897463 TATAT
1 TATAT
31897468 ATAATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (22 bp):
TATATTAAGAATTTTAGTAAAT
Found at i:31897705 original size:45 final size:44
Alignment explanation
Indices: 31897617--31897711 Score: 129
Period size: 45 Copynumber: 2.1 Consensus size: 44
31897607 ATTACAACAT
* *
31897617 CATTCCATTCAACCAAACACAAGAATACTGTTACGCCTCTATTC
1 CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
* *
31897661 CATTACATTCAACCAAACA-ATTGAATTGCTATTACGCCTCTATTC
1 CATTACATTCAACCAAACACA-AGAA-TACTATTACGCCTCTATTC
31897706 CATTAC
1 CATTAC
31897712 GCATCTATTC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 21 0.47
45 23 0.51
ACGTcount: A:0.34, C:0.29, G:0.06, T:0.31
Consensus pattern (44 bp):
CATTACATTCAACCAAACACAAGAATACTATTACGCCTCTATTC
Found at i:31897712 original size:16 final size:16
Alignment explanation
Indices: 31897691--31897727 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
31897681 TTGAATTGCT
*
31897691 ATTACGCCTCTATTCC
1 ATTACGCATCTATTCC
31897707 ATTACGCATCTATTCC
1 ATTACGCATCTATTCC
31897723 ATTAC
1 ATTAC
31897728 ATCGAACCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.24, C:0.32, G:0.05, T:0.38
Consensus pattern (16 bp):
ATTACGCATCTATTCC
Found at i:31897765 original size:14 final size:14
Alignment explanation
Indices: 31897746--31897776 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
31897736 AAACGTGCCC
31897746 TTATAAATAGATTT
1 TTATAAATAGATTT
*
31897760 TTATAAGTAGATTT
1 TTATAAATAGATTT
31897774 TTA
1 TTA
31897777 AAAGAAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.52
Consensus pattern (14 bp):
TTATAAATAGATTT
Found at i:31906603 original size:3 final size:3
Alignment explanation
Indices: 31906595--31906653 Score: 70
Period size: 3 Copynumber: 20.3 Consensus size: 3
31906585 GTGCATCAAT
* *
31906595 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TCTA TTG TTC TT- TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T-TC TTC TTC TTC TTC
31906640 TTC -TC TTC -TC TTC T
1 TTC TTC TTC TTC TTC T
31906654 CTAATGGTAC
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
2 6 0.12
3 41 0.84
4 2 0.04
ACGTcount: A:0.02, C:0.31, G:0.02, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:31910269 original size:28 final size:28
Alignment explanation
Indices: 31910238--31910299 Score: 124
Period size: 28 Copynumber: 2.2 Consensus size: 28
31910228 GATAAAGTAT
31910238 AATTTTAATTTTATCTATACTAATTTAA
1 AATTTTAATTTTATCTATACTAATTTAA
31910266 AATTTTAATTTTATCTATACTAATTTAA
1 AATTTTAATTTTATCTATACTAATTTAA
31910294 AATTTT
1 AATTTT
31910300 TATAAAGGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (28 bp):
AATTTTAATTTTATCTATACTAATTTAA
Found at i:31912830 original size:22 final size:21
Alignment explanation
Indices: 31912796--31912836 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
31912786 AGTTACAAAC
31912796 AATTATAGCATTTTTTATAAAT
1 AATTATAGCA-TTTTTATAAAT
**
31912818 AATTATATTATTTTTATAA
1 AATTATAGCATTTTTATAA
31912837 TATATAGCAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
AATTATAGCATTTTTATAAAT
Found at i:31913615 original size:24 final size:24
Alignment explanation
Indices: 31913573--31913624 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
31913563 AATCAAAGTC
* * *
31913573 AAATATATTGTGCTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
31913597 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
31913621 AAAT
1 AAAT
31913625 CTTATAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:31918937 original size:24 final size:25
Alignment explanation
Indices: 31918905--31918951 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
31918895 TTATTTATTT
31918905 ATTTCATAATATAATAA-TTAATATA
1 ATTTCATAAT-TAATAATTTAATATA
*
31918930 ATTT-ATAATTTATAATTTAATA
1 ATTTCATAATTAATAATTTAATA
31918952 ATAAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 5 0.25
24 11 0.55
25 4 0.20
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTTCATAATTAATAATTTAATATA
Found at i:31918945 original size:14 final size:15
Alignment explanation
Indices: 31918905--31918953 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
31918895 TTATTTATTT
*
31918905 ATTTCATAATATAATA
1 ATTT-ATAATTTAATA
31918921 ATTAATATAATTT-ATA
1 ATT--TATAATTTAATA
31918937 ATTTATAATTTAATA
1 ATTTATAATTTAATA
31918952 AT
1 AT
31918954 AAATAAAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 8 0.28
15 5 0.17
16 9 0.31
17 6 0.21
18 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (15 bp):
ATTTATAATTTAATA
Found at i:31920933 original size:24 final size:24
Alignment explanation
Indices: 31920891--31920942 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
31920881 AATCAAAGTC
** *
31920891 AAATATATTATGTTAATAAATGCT
1 AAATATATTATACTAATAAATACT
*
31920915 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
31920939 AAAT
1 AAAT
31920943 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:31922773 original size:16 final size:16
Alignment explanation
Indices: 31922754--31922792 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
31922744 CGTATACATA
31922754 TATATATACATACTTT
1 TATATATACATACTTT
*
31922770 TATATATACATGCTTT
1 TATATATACATACTTT
*
31922786 CATATAT
1 TATATAT
31922793 CTCCATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.03, T:0.49
Consensus pattern (16 bp):
TATATATACATACTTT
Found at i:31922825 original size:34 final size:33
Alignment explanation
Indices: 31922751--31922829 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 33
31922741 TAACGTATAC
*
31922751 ATATATATATACATACTTTTATATATACATGCT
1 ATATATATATACATAATTTTATATATACATGCT
* * * * *
31922784 TTCATATATCTCCATAATTTTATGTATATATGCAT
1 AT-ATATATATACATAATTTTATATATACATGC-T
31922819 ATATATATATA
1 ATATATATATA
31922830 TCTTTTACAT
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
33 1 0.03
34 32 0.91
35 2 0.06
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (33 bp):
ATATATATATACATAATTTTATATATACATGCT
Found at i:31928107 original size:71 final size:71
Alignment explanation
Indices: 31927991--31928126 Score: 186
Period size: 71 Copynumber: 1.9 Consensus size: 71
31927981 ATGATTTCAT
* * * *
31927991 ACATATTTTTCGGTTTTATCGACTAGCGTAGAGCGCATCTATTGTCGGTTATACCGA-TCAGTGC
1 ACATATTTTTCGGTTCTACCGACCAGCGTAGAGCGCATCTATTGTCAGTTATACCGACT-AGTGC
31928055 TGGACAG
65 TGGACAG
* *
31928062 ACATATTTGTT-GGTTCTACCGACCAGCGTAGGGCGCATTTATTGTCAGTTATACCGACTAGTGC
1 ACATATTT-TTCGGTTCTACCGACCAGCGTAGAGCGCATCTATTGTCAGTTATACCGACTAGTGC
31928126 T
65 T
31928127 AGGCATACTC
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
71 54 0.95
72 3 0.05
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (71 bp):
ACATATTTTTCGGTTCTACCGACCAGCGTAGAGCGCATCTATTGTCAGTTATACCGACTAGTGCT
GGACAG
Found at i:31931835 original size:40 final size:40
Alignment explanation
Indices: 31931787--31932102 Score: 289
Period size: 40 Copynumber: 7.8 Consensus size: 40
31931777 GTGGTTTTAG
31931787 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* * *
31931827 TCTACTCCACTACTGCTTAGGG-GAATAAGATCTGTGGTTCTG-
1 TCTGCTCCACTACTGCTTAGGGAG-ATAAGA-CT-T-GATGTGA
* * * *
31931869 TCTGCTCCACTATTGCTTGGGGAGATAAGACTTGAAGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* * *
31931909 TCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTGGTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGTGA
* * *
31931951 TCCGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
* * * * *
31931991 TCCGCTCCACTATTGCTTAGGGATATAAGATCTGTGGTTTTG-
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-T-GATGTGA
* ** * **
31932033 TCCGCTCTGCTACTACTTAGGGAGATAAGACTTGATACGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
*
31932073 TCTGCTCCACTATTGCTTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
31932103 TCTGTGGTTT
Statistics
Matches: 222, Mismatches: 40, Indels: 28
0.77 0.14 0.10
Matches are distributed among these distances:
39 9 0.04
40 111 0.50
41 12 0.05
42 80 0.36
43 10 0.05
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGA
Found at i:31931874 original size:82 final size:82
Alignment explanation
Indices: 31931771--31932113 Score: 508
Period size: 82 Copynumber: 4.2 Consensus size: 82
31931761 CATGGGGATG
* * * *
31931771 AGATTTGTGGTTTTAGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATCTACTCCA
1 AGATCTGTGGTTTT-GTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCA
*
31931836 CTACTGCTTAGGG-GAATA
65 CTATTGCTTAGGGAG-ATA
* * * * *
31931854 AGATCTGTGGTTCTGTCTGCTCCACTATTGCTTGGGGAGATAAGACTTGAAGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
31931919 TATTGCTTAGGGAGATA
66 TATTGCTTAGGGAGATA
* *
31931936 AGATCTGTGGTTTTGTCCGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCCGCTCCAC
1 AGATCTGTGGTTTTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
*
31932001 TATTGCTTAGGGATATA
66 TATTGCTTAGGGAGATA
** * *
31932018 AGATCTGTGGTTTTGTCCGCTCTGCTACTACTTAGGGAGATAAGACTTGATACGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
31932083 TATTGCTTAGGGAGATA
66 TATTGCTTAGGGAGATA
31932100 AGATCTGTGGTTTT
1 AGATCTGTGGTTTT
31932114 CACTCTATTC
Statistics
Matches: 238, Mismatches: 21, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
82 225 0.95
83 13 0.05
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (82 bp):
AGATCTGTGGTTTTGTCCGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
TATTGCTTAGGGAGATA
Found at i:31932423 original size:44 final size:45
Alignment explanation
Indices: 31932274--31932783 Score: 491
Period size: 44 Copynumber: 11.6 Consensus size: 45
31932264 CAAATACATG
* * * *
31932274 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * *
31932319 GACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * *
31932364 GACAAGATCTG-TATCTTGGATCCACTTC-CTATCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
31932407 GATAGGACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
31932451 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGTA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* *
31932496 GACAAGATCTGC-ATCGTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
** * * * *
31932539 GACCGGACCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * *
31932583 GACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAA-ATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
*
31932627 GACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
31932670 GATAGGATCTGCTACCTTCGATCTACTTCAC-GCCAATACATGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* * * * * *
31932714 GATAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAA
1 GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
* *
31932759 GACAAGATCTGCAATCTTCAATCTA
1 GACAAGATCTGCTATCTTCGATCTA
31932784 TTCCACTGCC
Statistics
Matches: 377, Mismatches: 78, Indels: 20
0.79 0.16 0.04
Matches are distributed among these distances:
42 6 0.02
43 69 0.18
44 190 0.50
45 112 0.30
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (45 bp):
GACAAGATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAA
Found at i:31932473 original size:132 final size:132
Alignment explanation
Indices: 31932282--31932777 Score: 796
Period size: 132 Copynumber: 3.8 Consensus size: 132
31932272 TGGACAAGAT
* * * *** *
31932282 CTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCTTTCTTCGATCTACTT
1 CTGCTATCTTCGATCTACTTCA-CGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTT
* * * * *
31932347 CACCACCAGTATGGGAAGACAAGATCTGTATCTTGGATCCACTTCCTATCAATATAGGAAGATAG
65 CGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
31932412 GAC
130 GAC
31932415 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
* * **
31932480 GCCACCAATATGGGTAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACCGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
31932545 AC
131 AC
31932547 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
31932612 GCCACCAA-ATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
66 GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
*
31932676 AT
131 AC
* *
31932678 CTGCTACCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTC
1 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
31932743 GCCACCAATATGGGAAGACAAGATCTGCAATCTTC
66 GCCACCAATATGGGAAGACAAGATCTGC-ATCTTC
31932778 AATCTATTCC
Statistics
Matches: 338, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
131 124 0.37
132 187 0.55
133 27 0.08
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.27
Consensus pattern (132 bp):
CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTC
GCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAGG
AC
Found at i:31932914 original size:136 final size:134
Alignment explanation
Indices: 31932755--31933049 Score: 493
Period size: 136 Copynumber: 2.2 Consensus size: 134
31932745 CACCAATATG
*
31932755 GGAAGACAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGC
1 GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGC
*
31932820 TTCAATCTACTCCACTGTAGTCATAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCAA
66 TTCAATCTACTCCACTGTAGTC--AGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCAA
31932885 AATACA
129 AATACA
*
31932891 GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAGATACAGGGAGATAGAGTTATCGGC
1 GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGC
* * *
31932956 TTCAATGTACTCCACTGTTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAA
66 TTCAATCTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCAAAA
31933021 TACA
131 TACA
*
31933025 GGAAAGCAAGATCTG-ATATCTTCAA
1 GGAAGGCAAGATCTGCA-ATCTTCAA
31933050 CCAGCTCTGC
Statistics
Matches: 151, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
133 1 0.01
134 67 0.44
136 83 0.55
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (134 bp):
GGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGC
TTCAATCTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCAAAA
TACA
Found at i:31932936 original size:46 final size:46
Alignment explanation
Indices: 31932214--31932938 Score: 114
Period size: 44 Copynumber: 16.3 Consensus size: 46
31932204 ATCTGCTTCG
* * *
31932214 CTGCCCAATACAGGAAGGCAAGATCTGCAATCCTCAATCTATTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTATTCCA
* * ** *
31932260 CTGTCAAATACATG--GACAAGATCTGCTTTCTTCGATCTACTT-CA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTCCA
** * ** ** *
31932304 CCACC-AGTATGGGAAGACAAGATCTGCTTTCTTCGATCTACTT-CA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTCCA
** * ** * ** *
31932349 CCACC-AGTATGGGAAGACAAGATCTG-TATCTTGGATCCACTTCCTA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTCC-A
* * * * * *
31932395 -T--C-AATATAGGAAGATAGGACCTGCTATCTTCGATCTACTT-CA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTCCA
* ** * *
31932437 C-GCC-AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGC-
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTC-CA
* ** * * * *
31932482 C-ACC-AATATGGGTAGACAAGATCTGC-ATCGTCGATCCACTT-C-
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTCCA
* * ** * * *
31932524 CTACC-AATATAGGAAGACCGGACCTGCTATCTTCGATCTACTT-CA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTCCA
* ** * *
31932569 C-GCC-AATACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGC-
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTC-CA
* * * *
31932614 C-ACCAAAT--GGGAAGACAAGATCTGC-ATCTTCGATCCACTT-C-
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTCCA
* * * * * * *
31932655 CTACC-AATATAGGAAGATAGGATCTGCTACCTTCGATCTACTT-CA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTCCA
* * ** * *
31932700 C-GCC-AATACATGAAGATAAGATCTGCTTTCTGCGATCTACTTCGC-
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTA-TTC-CA
* **
31932745 C-ACC-AATATGGGAAGACAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTATTCCA
* * * * ** *
31932789 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATCTACTCCA
1 CTGCCAAATACAGGAAGACA-AGATCTGCAATCTTCAATCTATTCCA
* * * * ** * * ** * *
31932834 CTG--TAGTCATAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAAT-ACAGGAAGACAAGATCTGCAATCTTCAATCT-ATTCCA
* *
31932879 CTGCAAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTATTCCA
*
31932925 CTGCCAGATACAGG
1 CTGCCAAATACAGG
31932939 GAGATAGAGT
Statistics
Matches: 523, Mismatches: 121, Indels: 70
0.73 0.17 0.10
Matches are distributed among these distances:
41 5 0.01
42 6 0.01
43 74 0.14
44 218 0.42
45 147 0.28
46 67 0.13
47 6 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCTATTCCA
Found at i:31933131 original size:86 final size:86
Alignment explanation
Indices: 31932997--31933346 Score: 547
Period size: 86 Copynumber: 4.1 Consensus size: 86
31932987 AAATCTGCCA
* * * *
31932997 TCTTCGATCTGCTTCGCTGCCAAATACAGGAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTA
*
31933062 CAAACGAGGGAGGCAAGGTTTG
65 CAAACGAGAGAGGCAAGGTTTG
* * *
31933084 TCTTCGATCTGCTTCGCTGTCAGTGCAGGAATGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
31933149 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
*
31933170 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
*
31933235 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGAGGCAAGGTTTG
* *
31933256 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
* * *
31933321 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGAGGCAAGGTTTG
31933342 TCTTC
1 TCTTC
31933347 AATTTTTACT
Statistics
Matches: 246, Mismatches: 17, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
86 226 0.92
87 20 0.08
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTACTAC
AAACGAGAGAGGCAAGGTTTG
Found at i:31933174 original size:41 final size:41
Alignment explanation
Indices: 31933129--31933260 Score: 99
Period size: 41 Copynumber: 3.1 Consensus size: 41
31933119 AGATCTGCTA
31933129 TCTTCAACCAGCTCTACTACAAACGAGAGTGGCAAGGTTTG
1 TCTTCAACCAGCTCTACTACAAACGAGAGTGGCAAGGTTTG
* * * * * * * * *
31933170 TCTTCGATCTGCT-TCGCTGTC-AATGCAG-GAAGGCAAGATCTGCTA
1 TCTTCAACCAGCTCT-ACT-ACAAACG-AGAG-TGGCAAGGT-T--TG
31933215 TCTTCAACCAGCTCTACTACAAACGAGAGTGGCAAGGTTTG
1 TCTTCAACCAGCTCTACTACAAACGAGAGTGGCAAGGTTTG
31933256 TCTTC
1 TCTTC
31933261 GATCTGCTTC
Statistics
Matches: 63, Mismatches: 18, Indels: 20
0.62 0.18 0.20
Matches are distributed among these distances:
40 1 0.02
41 22 0.35
42 10 0.16
43 2 0.03
44 10 0.16
45 17 0.27
46 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (41 bp):
TCTTCAACCAGCTCTACTACAAACGAGAGTGGCAAGGTTTG
Found at i:31933205 original size:42 final size:42
Alignment explanation
Indices: 31933159--31933292 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 42
31933149 AAACGAGAGT
31933159 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
1 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
* * * * * * * * *
31933201 GGCAAGATCTGCTATCTTCAACCAGC-TCTACT-ACAA-AC-GAGAGT
1 GGCAAGGT-T--TGTCTTCGATCTGCTTC-GCTGTCAATGCAG-GA-A
31933245 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
1 GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
31933287 GGCAAG
1 GGCAAG
31933293 ATCTGATAAC
Statistics
Matches: 64, Mismatches: 18, Indels: 20
0.63 0.18 0.20
Matches are distributed among these distances:
41 12 0.19
42 19 0.30
43 8 0.12
44 13 0.20
45 12 0.19
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (42 bp):
GGCAAGGTTTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAA
Found at i:31937482 original size:19 final size:20
Alignment explanation
Indices: 31937458--31937501 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
31937448 CGTGAAAGTC
* *
31937458 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
31937477 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
31937497 -AATGC
1 TAATGC
31937502 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:31941761 original size:133 final size:131
Alignment explanation
Indices: 31941588--31941887 Score: 322
Period size: 133 Copynumber: 2.3 Consensus size: 131
31941578 ATTAGTTATT
* * * **
31941588 TGGTTAGATAGTTGCAATTACATCTTTGAATCTTAAGTTTGATTCCTCTTTTAC-T-CA-TATTT
1 TGGTTAGATAGTTGCAATTACATCATTGAGTCTCAAGTTTGATTCCTCTACTACTTGCATTATTT
* * **
31941650 TTT-TTTCATGTTGCTTCAAGCTTTTTAAATTTTTAATTAGTGATTTTAAACATATTAG-TTTTT
66 TTTATTTCACGTTGCTTCAAG---TTT---TTTTTAATTAAT-ATTTTAAACATATTAGCTCCTT
*
31941713 TTGTTAGA
124 TCGTTAGA
* * * *
31941721 TGGTTAGATAGTTGTAATTACATCCTTGAGTCTCGAGTTTGATTCTTCTACTACTTGCATTTGTA
1 TGGTTAGATAGTTGCAATTACATCATTGAGTCTCAAGTTTGATTCCTCTACTACTTGCA--T-TA
*
31941786 TTTTTTATTTCACGTTGCTTCAAGTTTTTTTTAATTAATATTTTTAACATATTAGCTCCTTTCGT
63 TTTTTTATTTCACGTTGCTTCAAGTTTTTTTTAATTAATATTTTAAACATATTAGCTCCTTTCGT
31941851 TAGA
128 TAGA
* *
31941855 TGGTTAGATAATTGCGATTACATCATTGAGTCT
1 TGGTTAGATAGTTGCAATTACATCATTGAGTCT
31941888 GAGGTTCCAT
Statistics
Matches: 141, Mismatches: 18, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
133 61 0.43
134 51 0.36
135 2 0.01
137 3 0.02
139 8 0.06
140 16 0.11
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (131 bp):
TGGTTAGATAGTTGCAATTACATCATTGAGTCTCAAGTTTGATTCCTCTACTACTTGCATTATTT
TTTATTTCACGTTGCTTCAAGTTTTTTTTAATTAATATTTTAAACATATTAGCTCCTTTCGTTAG
A
Found at i:31941990 original size:39 final size:37
Alignment explanation
Indices: 31941947--31942029 Score: 132
Period size: 39 Copynumber: 2.2 Consensus size: 37
31941937 TGTTTCAAAT
31941947 TTTTTATTTTTAATTAATGT-TTTGTTGATTTTTTAATTA
1 TTTTTATTTTTAATTAATGTATTT-TT-A-TTTTTAATTA
31941986 TTTTTATTTTTAATTAATGTATTTTTATTTTTAATTA
1 TTTTTATTTTTAATTAATGTATTTTTATTTTTAATTA
31942023 TTTTTAT
1 TTTTTAT
31942030 AATCATATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
37 17 0.40
38 1 0.02
39 22 0.51
40 3 0.07
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (37 bp):
TTTTTATTTTTAATTAATGTATTTTTATTTTTAATTA
Found at i:31941997 original size:16 final size:16
Alignment explanation
Indices: 31941976--31942029 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 16
31941966 TTTTGTTGAT
31941976 TTTTTAATTATTTTTA
1 TTTTTAATTATTTTTA
31941992 TTTTTAATTAATGTATTTTTA
1 --TTT--TTAAT-TATTTTTA
31942013 TTTTTAATTATTTTTA
1 TTTTTAATTATTTTTA
31942029 T
1 T
31942030 AATCATATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
16 9 0.27
17 5 0.15
18 3 0.09
19 3 0.09
20 5 0.15
21 8 0.24
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (16 bp):
TTTTTAATTATTTTTA
Found at i:31942008 original size:21 final size:21
Alignment explanation
Indices: 31941947--31942022 Score: 99
Period size: 21 Copynumber: 3.8 Consensus size: 21
31941937 TGTTTCAAAT
31941947 TTTTTATTTTTAATTAATGT-
1 TTTTTATTTTTAATTAATGTA
31941967 TTTGTTGA-TTTT--TTAAT-TA
1 TTT-TT-ATTTTTAATTAATGTA
31941986 TTTTTATTTTTAATTAATGTA
1 TTTTTATTTTTAATTAATGTA
31942007 TTTTTATTTTTAATTA
1 TTTTTATTTTTAATTA
31942023 TTTTTATAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
17 1 0.02
18 7 0.14
19 8 0.16
20 8 0.16
21 24 0.49
22 1 0.02
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTTTATTTTTAATTAATGTA
Found at i:31942314 original size:4 final size:4
Alignment explanation
Indices: 31942305--31942401 Score: 185
Period size: 4 Copynumber: 24.2 Consensus size: 4
31942295 CAAAGAAAAC
*
31942305 ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
31942353 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
31942401 A
1 A
31942402 TCCTTAATTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
4 91 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:31948418 original size:17 final size:17
Alignment explanation
Indices: 31948353--31948421 Score: 54
Period size: 17 Copynumber: 4.0 Consensus size: 17
31948343 ATGCAACGGA
31948353 TGATTC-GA-TTAAT-T
1 TGATTCGGATTTAATAT
*
31948367 TGAATTCGGATTTAGATAG
1 TG-ATTCGGATTTA-ATAT
* *
31948386 TAATACTCGAATTTAATAT
1 TGAT--TCGGATTTAATAT
31948405 TGATTCGGATTTAATAT
1 TGATTCGGATTTAATAT
31948422 ATATTTATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
14 2 0.05
15 4 0.10
16 2 0.05
17 15 0.36
18 4 0.10
19 7 0.17
20 8 0.19
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.43
Consensus pattern (17 bp):
TGATTCGGATTTAATAT
Found at i:31951141 original size:25 final size:25
Alignment explanation
Indices: 31951088--31951142 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
31951078 CGATTTGATC
* *
31951088 AAATAAATTATTTAAAAAATTCATAA
1 AAATAAAATATTTAAAAAA-TCAGAA
31951114 AAATAAAATATTTAAAAAA-CAGAGA
1 AAATAAAATATTTAAAAAATCAGA-A
31951139 AAAT
1 AAAT
31951143 CGATTCAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 3 0.12
25 5 0.19
26 18 0.69
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (25 bp):
AAATAAAATATTTAAAAAATCAGAA
Found at i:31952030 original size:20 final size:23
Alignment explanation
Indices: 31952007--31952049 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
31951997 TACTTTTTTT
31952007 AATAATT-TT-TA-ATTTTTAAA
1 AATAATTATTATATATTTTTAAA
31952027 AATAATTATTATATATTTTTAAA
1 AATAATTATTATATATTTTTAAA
31952050 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 2 0.10
22 2 0.10
23 9 0.45
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AATAATTATTATATATTTTTAAA
Found at i:31952442 original size:6 final size:6
Alignment explanation
Indices: 31952431--31952455 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
31952421 ATATTTTCTA
31952431 TAAATT TAAATT TAAATT TAAATT T
1 TAAATT TAAATT TAAATT TAAATT T
31952456 TTTATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAAATT
Found at i:31954371 original size:10 final size:10
Alignment explanation
Indices: 31954356--31954422 Score: 50
Period size: 10 Copynumber: 6.6 Consensus size: 10
31954346 AACAAATAAT
31954356 TAAAAAATTA
1 TAAAAAATTA
31954366 TAAAAATATT-
1 TAAAAA-ATTA
31954376 TAAATAAA--A
1 TAAA-AAATTA
*
31954385 TAAAATAATTT
1 TAAAA-AATTA
31954396 TAAAAAATATA
1 TAAAAAAT-TA
**
31954407 TAAAAGTTTA
1 TAAAAAATTA
31954417 TAAAAA
1 TAAAAA
31954423 TTAGCATGGA
Statistics
Matches: 45, Mismatches: 5, Indels: 14
0.70 0.08 0.22
Matches are distributed among these distances:
8 1 0.02
9 6 0.13
10 21 0.47
11 17 0.38
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.33
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:31954378 original size:20 final size:20
Alignment explanation
Indices: 31954349--31954411 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
31954339 TCACGTCAAC
*
31954349 AAATAATTAAAAAATTATAA
1 AAATATTTAAAAAATTATAA
*
31954369 AAATATTTAAATAAAATA-AA
1 AAATATTTAAA-AAATTATAA
31954389 ATAAT-TTTAAAAAATATATAA
1 A-AATATTTAAAAAAT-TATAA
31954410 AA
1 AA
31954412 GTTTATAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
19 3 0.08
20 22 0.61
21 11 0.31
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATATTTAAAAAATTATAA
Found at i:31954391 original size:18 final size:18
Alignment explanation
Indices: 31954349--31954404 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 18
31954339 TCACGTCAAC
31954349 AAATAA-TTAAAAAATTATA
1 AAATAATTTAAAAAA--ATA
31954368 AAA-ATATTTAAATAAAATA
1 AAATA-ATTTAAA-AAAATA
*
31954387 AAATAATTTTAAAAAATA
1 AAATAATTTAAAAAAATA
31954405 TATAAAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
18 7 0.22
19 16 0.50
20 6 0.19
21 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATAATTTAAAAAAATA
Found at i:31956798 original size:24 final size:23
Alignment explanation
Indices: 31956763--31956807 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
31956753 AATTTTGATT
* *
31956763 AAATAAATTATTAAAATTTTAAA
1 AAATAAAATATTAAAAATTTAAA
31956786 AAATAAAAATATTAAAAATTTA
1 AAAT-AAAATATTAAAAATTTA
31956808 GTTCAATTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
AAATAAAATATTAAAAATTTAAA
Found at i:31971591 original size:35 final size:35
Alignment explanation
Indices: 31971544--31971675 Score: 176
Period size: 35 Copynumber: 3.7 Consensus size: 35
31971534 GATTGGAGTT
* * *
31971544 GCTCTTATGAGCATTAGTGTATTTCGGAGGGATTA
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
31971579 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
* **
31971614 GCTCTTACGAGCATTGGTGTGTTTCAGATAGATT-
1 GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
*
31971648 GACTCTTATGAGCATATGGTGTGTTTCG
1 G-CTCTTACGAGCAT-TGGTGTGTTTCG
31971676 ATTGGATTGT
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
34 1 0.01
35 75 0.86
36 11 0.13
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.37
Consensus pattern (35 bp):
GCTCTTACGAGCATTGGTGTGTTTCGGAGGGATTA
Found at i:31979600 original size:40 final size:40
Alignment explanation
Indices: 31979544--31979619 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
31979534 TGTTTAAAAT
* *
31979544 AAATATTTAATTAGATAAACATAAAATTTAAAAATTAGAA
1 AAATATTTAATCAGATAAACAGAAAATTTAAAAATTAGAA
* * *
31979584 AAATGTTTAATCAGATAAATAGAAATTTTAAAAATT
1 AAATATTTAATCAGATAAACAGAAAATTTAAAAATT
31979620 TTATTTTTCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.34
Consensus pattern (40 bp):
AAATATTTAATCAGATAAACAGAAAATTTAAAAATTAGAA
Found at i:31980346 original size:14 final size:14
Alignment explanation
Indices: 31980282--31980336 Score: 58
Period size: 14 Copynumber: 3.8 Consensus size: 14
31980272 TAATTTAATC
31980282 ATATTTTAATTT-AA
1 ATATTTT-ATTTCAA
* *
31980296 TTATTTATATATTAAA
1 ATATTT-TAT-TTCAA
31980312 ATATTTTATTTCAA
1 ATATTTTATTTCAA
31980326 ATATTTTATTT
1 ATATTTTATTT
31980337 TTTATATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 22 0.63
15 6 0.17
16 7 0.20
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (14 bp):
ATATTTTATTTCAA
Found at i:31982516 original size:40 final size:40
Alignment explanation
Indices: 31982430--31982523 Score: 100
Period size: 40 Copynumber: 2.4 Consensus size: 40
31982420 CAGGGGACGT
* *
31982430 GTCAGCAAATCGCGTCCACGTCAGCGCAGTTTGCTGACAT
1 GTCAGCAAATCGCGTCCACGTAAGCGCAGTTTGCTGACAC
* * * * *
31982470 GGCAGCAAATTGCTTCCACGTAAGCGCGGTTTG-TGTCCAC
1 GTCAGCAAATCGCGTCCACGTAAGCGCAGTTTGCTG-ACAC
*
31982510 GTCAGCAAAGCGCG
1 GTCAGCAAATCGCG
31982524 CTGACGTGCA
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
39 2 0.05
40 40 0.95
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (40 bp):
GTCAGCAAATCGCGTCCACGTAAGCGCAGTTTGCTGACAC
Found at i:31982709 original size:22 final size:23
Alignment explanation
Indices: 31982679--31982754 Score: 86
Period size: 22 Copynumber: 3.4 Consensus size: 23
31982669 AACTAATCCT
*
31982679 CTCTCAAATTTTCTCTAAATTTC
1 CTCTCAAATTTCCTCTAAATTTC
* *
31982702 CTCT-AAATTTCCTCTCAATTTG
1 CTCTCAAATTTCCTCTAAATTTC
*
31982724 CTCTCAAA-TTCCTTCCAAATTT-
1 CTCTCAAATTTCC-TCTAAATTTC
31982746 CTCTCAAAT
1 CTCTCAAAT
31982755 CCATATTTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
22 31 0.69
23 14 0.31
ACGTcount: A:0.26, C:0.29, G:0.01, T:0.43
Consensus pattern (23 bp):
CTCTCAAATTTCCTCTAAATTTC
Found at i:31982736 original size:33 final size:33
Alignment explanation
Indices: 31982678--31982752 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 33
31982668 AAACTAATCC
* *
31982678 TCTCTCAAATTTTCTCTAAATTTCC-TCTAAATT
1 TCTCTC-AATTTGCTCTAAATTTCCTTCCAAATT
31982711 TCCTCTCAATTTGCTCTCAAA-TTCCTTCCAAATT
1 T-CTCTCAATTTGCTCT-AAATTTCCTTCCAAATT
31982745 TCTCTCAA
1 TCTCTCAA
31982753 ATCCATATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
33 21 0.57
34 16 0.43
ACGTcount: A:0.25, C:0.29, G:0.01, T:0.44
Consensus pattern (33 bp):
TCTCTCAATTTGCTCTAAATTTCCTTCCAAATT
Found at i:31982753 original size:11 final size:11
Alignment explanation
Indices: 31982678--31982754 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
31982668 AAACTAATCC
31982678 TCTCTCAAATT
1 TCTCTCAAATT
31982689 T-TCTCTAAATT
1 TCTCTC-AAATT
31982700 TC-CTCTAAATT
1 TCTCTC-AAATT
31982711 TCCTCTC-AATT
1 T-CTCTCAAATT
31982722 TGCTCTCAAATT
1 T-CTCTCAAATT
*
31982734 CCT-TCCAAATT
1 TCTCT-CAAATT
31982745 TCTCTCAAAT
1 TCTCTCAAAT
31982755 CCATATTTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 14
0.77 0.04 0.19
Matches are distributed among these distances:
10 5 0.09
11 42 0.75
12 6 0.11
13 3 0.05
ACGTcount: A:0.26, C:0.29, G:0.01, T:0.44
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:31982771 original size:51 final size:51
Alignment explanation
Indices: 31982714--31982813 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
31982704 CTAAATTTCC
31982714 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTGCTCTCAAATTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
31982765 TCTCAATTTGCTCTCAAGTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTT
31982814 TTAAATAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.03, T:0.44
Consensus pattern (51 bp):
TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:31983788 original size:21 final size:20
Alignment explanation
Indices: 31983749--31983786 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
31983739 TAACGAGATA
31983749 AATTTTATATTAGATTTTAT
1 AATTTTATATTAGATTTTAT
31983769 AATTATTATA-TAGATTTT
1 AATT-TTATATTAGATTTT
31983787 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (20 bp):
AATTTTATATTAGATTTTAT
Found at i:31983967 original size:7 final size:7
Alignment explanation
Indices: 31983955--31983980 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
31983945 TAGTCGATTG
31983955 GTATTTA
1 GTATTTA
31983962 GTATTTA
1 GTATTTA
31983969 GTATTTA
1 GTATTTA
31983976 GTATT
1 GTATT
31983981 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:31985293 original size:22 final size:21
Alignment explanation
Indices: 31985252--31985708 Score: 509
Period size: 22 Copynumber: 21.2 Consensus size: 21
31985242 ACCCTAACTT
*
31985252 TAACCCTTAACTTAAAACCCC
1 TAACCCTTAACTTAAAAACCC
*
31985273 TAACCCTTAAATTAAAAACCC
1 TAACCCTTAACTTAAAAACCC
* * *
31985294 TAAACCCTTAACCTAAAAAACA
1 T-AACCCTTAACTTAAAAACCC
31985316 TAACCCTTAACTTAAAAACCC
1 TAACCCTTAACTTAAAAACCC
* *
31985337 TAGCCCCTTAACTTAAAAACGC
1 TA-ACCCTTAACTTAAAAACCC
** * *
31985359 TAAACATTTCACTTAAAAACCT
1 T-AACCCTTAACTTAAAAACCC
31985381 TAACCCTTAACTTAAAAACCC
1 TAACCCTTAACTTAAAAACCC
31985402 TAAACCCTTAACTTAAAAACCC
1 T-AACCCTTAACTTAAAAACCC
* *
31985424 TAACCCCTTAAATTAAAAACCA
1 TAA-CCCTTAACTTAAAAACCC
31985446 TAAACCCTTAACTTAAAAACCC
1 T-AACCCTTAACTTAAAAACCC
31985468 TAACCCTTAACTTAAAAACCC
1 TAACCCTTAACTTAAAAACCC
*
31985489 TAACCCTTTAAATTAAAAACCC
1 TAACCC-TTAACTTAAAAACCC
* *
31985511 TAAACCCTTAAATTAAAAACCT
1 T-AACCCTTAACTTAAAAACCC
* *
31985533 TAAACCCATAAATTAAAAACCC
1 T-AACCCTTAACTTAAAAACCC
*
31985555 TAAGCCTTTAACTTAAAAACCC
1 TAA-CCCTTAACTTAAAAACCC
* *
31985577 TAACCCTTAACTTTAAAATCC
1 TAACCCTTAACTTAAAAACCC
* * * *
31985598 TAATCCCTTAATTTTAAAATCG
1 TAA-CCCTTAACTTAAAAACCC
* * *
31985620 TAACCTTTAAATTAAAAACCA
1 TAACCCTTAACTTAAAAACCC
* *
31985641 TAAACCCTTAACTTTAAAACCG
1 T-AACCCTTAACTTAAAAACCC
* *
31985663 TAACCCTTAAATAAAAAACCC
1 TAACCCTTAACTTAAAAACCC
*
31985684 TAACACTTAACTTAAAAACCC
1 TAACCCTTAACTTAAAAACCC
31985705 TAAC
1 TAAC
31985709 TTAAATATAA
Statistics
Matches: 372, Mismatches: 53, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
21 156 0.42
22 208 0.56
23 8 0.02
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.25
Consensus pattern (21 bp):
TAACCCTTAACTTAAAAACCC
Found at i:31985311 original size:43 final size:43
Alignment explanation
Indices: 31985253--31985708 Score: 513
Period size: 43 Copynumber: 10.6 Consensus size: 43
31985243 CCCTAACTTT
*
31985253 AACCCTTAACTTAAAACCCCTAACCCTTAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTA
* * * *
31985296 AACCCTTAACCTAAAAAACATAACCCTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTA
** * ** * * *
31985339 GCCCCTTAACTTAAAAACGCTAAACATTTCACTTAAAAA-CCTT
1 AACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCCTA
*
31985382 AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCCTA
* * * *
31985426 ACCCCTTAAATTAAAAACCATAAACCCTTAACTTAAAAACCCT-
1 AACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCCTA
31985469 AACCCTTAACTTAAAAACCCTAACCCTTTAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCTAACCC-TTAAATTAAAAACCCTA
* * *
31985513 AACCCTTAAATTAAAAACCTTAAACCCATAAATTAAAAACCCTA
1 AACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCCTA
* * * * *
31985557 AGCCTTTAACTTAAAAACCCTAACCCTTAACTTTAAAATCCTA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTA
* * * * * * *
31985600 ATCCCTTAATTTTAAAATCGTAACCTTTAAATTAAAAACCATA
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTA
* * *
31985643 AACCCTTAACTTTAAAACCGTAACCCTTAAATAAAAAACCCT-
1 AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTA
*
31985685 AACACTTAACTTAAAAACCCTAAC
1 AACCCTTAACTTAAAAACCCTAAC
31985709 TTAAATATAA
Statistics
Matches: 348, Mismatches: 60, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
42 26 0.07
43 208 0.60
44 109 0.31
45 5 0.01
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.25
Consensus pattern (43 bp):
AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTA
Found at i:31985356 original size:65 final size:64
Alignment explanation
Indices: 31985252--31985708 Score: 506
Period size: 65 Copynumber: 7.1 Consensus size: 64
31985242 ACCCTAACTT
* * *
31985252 TAACCCTTAACTTAAAACCCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACCTAAAAAACA
1 TAACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCA
* * * ** * *
31985316 TAACCCTTAACTTAAAAACCCTAGCCCCTTAACTTAAAAACGCTAAACATTTCACTTAAAAACCT
1 TAACCCTTAACTTAAAAACCCTA-ACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCA
* * *
31985381 TAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAAAACCCTAACCCCTTAAATTAAAAACCA
1 TAACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCA
* *
31985446 TAAACCCTTAACTTAAAAACCCTAACCCTTAACTTAAAAACCCT-AACCCTTTAAATTAAAAACC
1 T-AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCC-TTAACTTAAAAACC
*
31985510 C
64 A
* * * * *
31985511 TAAACCCTTAAATTAAAAACCTTAAACCCATAAATTAAAAACCCTAAGCCTTTAACTTAAAAACC
1 T-AACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACC
*
31985576 C
64 A
* * * * * * * *
31985577 TAACCCTTAACTTTAAAATCCTAATCCCTTAATTTTAAAATCGT-AACCTTTAAATTAAAAACCA
1 TAACCCTTAACTTAAAAACCCTAA-CCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCA
* * * * *
31985641 TAAACCCTTAACTTTAAAACCGTAACCCTTAAATAAAAAACCCT-AACACTTAACTTAAAAACCC
1 T-AACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCA
31985705 TAAC
1 TAAC
31985709 TTAAATATAA
Statistics
Matches: 335, Mismatches: 50, Indels: 17
0.83 0.12 0.04
Matches are distributed among these distances:
63 3 0.01
64 77 0.23
65 196 0.59
66 56 0.17
67 3 0.01
ACGTcount: A:0.45, C:0.28, G:0.01, T:0.25
Consensus pattern (64 bp):
TAACCCTTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACTTAAAAACCA
Found at i:31989207 original size:125 final size:127
Alignment explanation
Indices: 31988889--31989207 Score: 471
Period size: 127 Copynumber: 2.5 Consensus size: 127
31988879 CCCAAACATG
*
31988889 CTACTGTAGCAAAAGTGCGTCCACGTGGGAGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
31988954 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
66 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
* * * * *
31989016 CAACTGTAGCAAAAGTGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCATAAAGCATCTTGC
1 CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
* **
31989081 TTGAAGCG-TTTTTTAAACTATTTGCTCAGAAACGTCAACTTGAAATTATTT-TTCCAAGAC
66 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
* * * * * * * *
31989141 CTACTGTAGCAAAAGCGCGTACATGTGGGCGCAACTTCAAAAATCCTTCTGATAAATCATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
31989206 TT
66 TT
31989208 TGATTTTATC
Statistics
Matches: 170, Mismatches: 22, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
125 63 0.37
126 40 0.24
127 67 0.39
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (127 bp):
CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
Found at i:31989222 original size:125 final size:125
Alignment explanation
Indices: 31988889--31989207 Score: 442
Period size: 125 Copynumber: 2.5 Consensus size: 125
31988879 CCCAAACATG
*
31988889 CTACTGTAGCAAAAGTGCGTCCACGTGGGAGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
31988954 TTGAAGCGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
66 TTGAA--GTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
* * * * *
31989016 CAACTGTAGCAAAAGTGCGTCCACGAGGGCACGATTTCACAAATTCTTCTCATAAAGCATCTTGC
1 CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * **
31989081 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTTGAAATTATTT-TTCCAAGAC
66 TTGAAG-TTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
* * * * * * * *
31989141 CTACTGTAGCAAAAGCGCGTACATGTGGGCGCAACTTCAAAAATCCTTCTGATAAATCATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
31989206 TT
66 TT
31989208 TGATTTTATC
Statistics
Matches: 168, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
125 64 0.38
126 40 0.24
127 64 0.38
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGTGCGTCCACGTGGGCGCAATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGTTTTTTTAAACTATTTGCTCAGAAACCTCAACTCAAAATTATTTCTTCCAAGAC
Found at i:31989333 original size:9 final size:9
Alignment explanation
Indices: 31989319--31989352 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
31989309 TTATTTTTTT
31989319 CTAAAAACC
1 CTAAAAACC
*
31989328 CTAAAAATC
1 CTAAAAACC
*
31989337 CTAAAACCC
1 CTAAAAACC
31989346 CTAAAAA
1 CTAAAAA
31989353 TCATAATGTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (9 bp):
CTAAAAACC
Found at i:31989342 original size:18 final size:18
Alignment explanation
Indices: 31989319--31989354 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
31989309 TTATTTTTTT
31989319 CTAAAAACCCTAAAAATC
1 CTAAAAACCCTAAAAATC
*
31989337 CTAAAACCCCTAAAAATC
1 CTAAAAACCCTAAAAATC
31989355 ATAATGTGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.53, C:0.31, G:0.00, T:0.17
Consensus pattern (18 bp):
CTAAAAACCCTAAAAATC
Found at i:31989550 original size:42 final size:40
Alignment explanation
Indices: 31989448--31989556 Score: 112
Period size: 40 Copynumber: 2.7 Consensus size: 40
31989438 GACGTCGACA
* * **
31989448 CAAACCGCGCTTACGTGGACGCGATTTGCTGCCACGTCAG
1 CAAATCGCGCTAACGTGGACGCGATTTGCTAACACGTCAG
* * *
31989488 CAAATCGCGCTGACATGGACGCGATTTGCTAACACGTTC-C
1 CAAATCGCGCTAACGTGGACGCGATTTGCTAACACG-TCAG
*
31989528 CTGACATCGCGCTAACGTGGACGCGATTT
1 C--AAATCGCGCTAACGTGGACGCGATTT
31989557 AGGGGAAAAG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
40 32 0.56
41 2 0.04
42 23 0.40
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (40 bp):
CAAATCGCGCTAACGTGGACGCGATTTGCTAACACGTCAG
Found at i:31997316 original size:23 final size:25
Alignment explanation
Indices: 31997272--31997335 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 25
31997262 ATACAATTGG
31997272 ATTTCATATTTTTTTGTTTTTA-GTA
1 ATTTCA-ATTTTTTTGTTTTTATGTA
*
31997297 ATTT-AATTTTTTCTG-TTTTATGTT
1 ATTTCAATTTTTT-TGTTTTTATGTA
31997321 ATTTCAACTTTTTTT
1 ATTTCAA-TTTTTTT
31997336 TTCTCTCTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
23 12 0.35
24 9 0.26
25 7 0.21
26 6 0.18
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.69
Consensus pattern (25 bp):
ATTTCAATTTTTTTGTTTTTATGTA
Found at i:32001000 original size:51 final size:51
Alignment explanation
Indices: 32000894--32001011 Score: 123
Period size: 51 Copynumber: 2.3 Consensus size: 51
32000884 TGTGTAAATG
* * * * ** *
32000894 TTGACAG-ATGTGTAAATTTTGCAGGTTAAATTTGTTAAATCAGGATCAAG
1 TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATAAAAATCAAA
*
32000944 CTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATTAAAAAT-AAA
1 TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAA-TAAAAATCAAA
* *
32000995 TTGACAAAAGGTGTAAA
1 TTGACAGAATGTGTAAA
32001012 CTTTGAGGGT
Statistics
Matches: 55, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
50 6 0.11
51 45 0.82
52 4 0.07
ACGTcount: A:0.41, C:0.08, G:0.19, T:0.32
Consensus pattern (51 bp):
TTGACAGAATGTGTAAATGTTGCAGGCTAAATTTATTAAATAAAAATCAAA
Found at i:32003860 original size:27 final size:27
Alignment explanation
Indices: 32003797--32003859 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
32003787 TTGGTTTAAG
**
32003797 AAAATATTTTATATTTTTAATCTTCAA
1 AAAATATTTTATATTTTTAAAATTCAA
*
32003824 AAAATATTTTCTATTTTTAAAATT-AA
1 AAAATATTTTATATTTTTAAAATTCAA
*
32003850 AAAATCTTTT
1 AAAATATTTT
32003860 TTCAAAGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 11 0.34
27 21 0.66
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (27 bp):
AAAATATTTTATATTTTTAAAATTCAA
Found at i:32009162 original size:21 final size:21
Alignment explanation
Indices: 32009136--32009177 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
32009126 TTATATATAC
32009136 AATATAATGTAAATATTTAAA
1 AATATAATGTAAATATTTAAA
* *
32009157 AATATATTGTATATATTTAAA
1 AATATAATGTAAATATTTAAA
32009178 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
AATATAATGTAAATATTTAAA
Found at i:32009415 original size:17 final size:19
Alignment explanation
Indices: 32009373--32009415 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
32009363 TTCAATCTAT
* *
32009373 TCAATTGTTGATTTTTGTC
1 TCAATTTTTGATTTTTGAC
32009392 TCAATTTTTGATTTTT-AC
1 TCAATTTTTGATTTTTGAC
32009410 -CAATTT
1 TCAATTT
32009416 CAAACAGTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (19 bp):
TCAATTTTTGATTTTTGAC
Found at i:32016611 original size:18 final size:20
Alignment explanation
Indices: 32016588--32016630 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
32016578 CATATACATG
32016588 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
32016606 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
32016626 CATAC
1 CATAC
32016631 TTATACATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
19 1 0.04
20 12 0.52
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:32018955 original size:19 final size:19
Alignment explanation
Indices: 32018931--32018975 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
32018921 TTTTTCTTTT
*
32018931 TGCATT-CATTTCATACATA
1 TGCATTACATTGCAT-CATA
32018950 TGCATTACATTGCATCATA
1 TGCATTACATTGCATCATA
32018969 TGCATTA
1 TGCATTA
32018976 GATTTTCACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.31, C:0.20, G:0.09, T:0.40
Consensus pattern (19 bp):
TGCATTACATTGCATCATA
Found at i:32023035 original size:24 final size:24
Alignment explanation
Indices: 32022996--32023053 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
32022986 ATGTCTCTAA
* *
32022996 ATTACAGTAGACTGAACCTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
* *
32023020 ATTATAGTGGATTGAACTTTGAAG
1 ATTACAGTGGATTGAACCTTGAAG
32023044 ATTACAGTGG
1 ATTACAGTGG
32023054 GGCAGTCCGG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (24 bp):
ATTACAGTGGATTGAACCTTGAAG
Found at i:32023428 original size:50 final size:50
Alignment explanation
Indices: 32023362--32023735 Score: 243
Period size: 50 Copynumber: 7.5 Consensus size: 50
32023352 GAGCAGATGA
* * *
32023362 AAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTG
1 AAGCTGCAACGGCGAATCTTACTTCCCCGACATTGCAATTGAAAAGATTG
* * ** * * * ** *
32023412 AAGCCGCAACGACGAATCTTACTTCCATGGCGA-TGCAGTGGAGCAGATTA
1 AAGCTGCAACGGCGAATCTTACTTCCCCGAC-ATTGCAATTGAAAAGATTG
* * * *
32023462 AAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTG
1 AAGCTGCAACGGCGAATCTTACTTCCCCGACATTGCAATTGAAAAGATTG
* * * * ** * * * **
32023512 AAGCCGCAATGGCGAATCTTACTTCCCTGGCGGTACAGTGGATCAGATTG
1 AAGCTGCAACGGCGAATCTTACTTCCCCGACATTGCAATTGAAAAGATTG
* ** ** *
32023562 AAGCTACAACGGTAAAT-TTTGTT-CCCGACATTGCAATTAAAAAGATTG
1 AAGCTGCAACGGCGAATCTTACTTCCCCGACATTGCAATTGAAAAGATTG
* * * ** * * ** *
32023610 AAGCTGCAAAGGTGAATCTTACTTCCCTGGTGA-TGCAGTGGAGCAGATTA
1 AAGCTGCAACGGCGAATCTTACTTCCC-CGACATTGCAATTGAAAAGATTG
* * * *
32023660 AAGCTACGACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTG
1 AAGCTGCAACGGCGAATCTTACTTCCCCGACATTGCAATTGAAAAGATTG
* * *
32023710 AAGCCGGAACGGTGAATCTTACTTCC
1 AAGCTGCAACGGCGAATCTTACTTCC
32023736 TTGGTGGTGC
Statistics
Matches: 225, Mismatches: 93, Indels: 12
0.68 0.28 0.04
Matches are distributed among these distances:
48 29 0.13
49 11 0.05
50 182 0.81
51 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (50 bp):
AAGCTGCAACGGCGAATCTTACTTCCCCGACATTGCAATTGAAAAGATTG
Found at i:32023507 original size:100 final size:100
Alignment explanation
Indices: 32023333--32023794 Score: 624
Period size: 100 Copynumber: 4.6 Consensus size: 100
32023323 ATGAAGTTAC
*
32023333 CTTCCCTGGC-AGTGCAGTGGAGCAGATGAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTG
1 CTTCCCTGGCGA-TGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTG
* *
32023397 CAATTTAAAAGATTGAAGCCGCAACGACGAATCTTA
65 CAATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* *
32023433 CTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
*
32023498 AATTAAAAAGATTGAAGCCGCAATGGCGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* * * * ** *
32023533 CTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACGGTAAATTTTG-TT-CCCGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
* * *
32023596 AATTAAAAAGATTGAAGCTGCAAAGGTGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* *
32023631 CTTCCCTGGTGATGCAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCCGACATTGC
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
* * *
32023696 AATTTAAAAGATTGAAGCCGGAACGGTGAATCTTA
66 AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
* * * * * * ** *
32023731 CTTCCTTGGTGGTGCAGCGGAACTGATTAAAGCTACAACAACAAATCTTGCTTCCCCGACATTG
1 CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTG
32023795 TAGTTAATCA
Statistics
Matches: 321, Mismatches: 38, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
98 84 0.26
99 4 0.01
100 232 0.72
101 1 0.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (100 bp):
CTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGC
AATTAAAAAGATTGAAGCCGCAACGGCGAATCTTA
Found at i:32023679 original size:198 final size:200
Alignment explanation
Indices: 32023333--32023794 Score: 651
Period size: 198 Copynumber: 2.3 Consensus size: 200
32023323 ATGAAGTTAC
* * *
32023333 CTTCCCTGGCAGTGCAGTGGAGCAGA-TGAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTG
1 CTTCCCTGGCGGTGCAGTGGAACAGATTG-AAGCTACAACGGCAAATCTTGCTTCCCCGACATTG
* *
32023397 CAATTTAAAAGATTGAAGCCGCAACGACGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTA
65 CAATTAAAAAGATTGAAGCCGCAAAGACGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTA
* *
32023462 AAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAATGGCGA
130 AAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGA
32023527 ATCTTA
195 ATCTTA
* * * *
32023533 CTTCCCTGGCGGTACAGTGGATCAGATTGAAGCTACAACGGTAAATTTTG-TT-CCCGACATTGC
1 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGC
* ** * *
32023596 AATTAAAAAGATTGAAGCTGCAAAGGTGAATCTTACTTCCCTGGTGATGCAGTGGAGCAGATTAA
66 AATTAAAAAGATTGAAGCCGCAAAGACGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAA
* * * *
32023661 AGCTACGACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGGAACGGTGAA
131 AGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAA
32023726 TCTTA
196 TCTTA
* * * * * **
32023731 CTTCCTTGGTGGTGCAGCGGAACTGATTAAAGCTACAACAACAAATCTTGCTTCCCCGACATTG
1 CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTG
32023795 TAGTTAATCA
Statistics
Matches: 229, Mismatches: 30, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
198 172 0.75
199 4 0.02
200 51 0.22
201 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (200 bp):
CTTCCCTGGCGGTGCAGTGGAACAGATTGAAGCTACAACGGCAAATCTTGCTTCCCCGACATTGC
AATTAAAAAGATTGAAGCCGCAAAGACGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAA
AGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCAACGGCGAA
TCTTA
Found at i:32023968 original size:87 final size:87
Alignment explanation
Indices: 32023857--32024231 Score: 267
Period size: 87 Copynumber: 4.4 Consensus size: 87
32023847 CCGATCGCTT
32023857 CCAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGT
1 CCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCT-AAGT
*
32023921 TCCAGTGGAGTGGATTAAAACCA
65 TGCAGTGGAGTGGATTAAAACCA
* * * * * * * *
32023944 -CAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATTG----CATCTAGTCTTATCTCCCTAAGC
1 CCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAAAAACCAATCCTATCTCCCTAAGT
* * ** ** **
32024004 AGTAGTGGAGCAGACGAAAAAAA
65 TGCAGTGGAGTGGATTAAAACCA
* ** *** ** ** *
32024027 CCA-ATCCTATCTCCCTGAAGTTGTAGTGGAATGGATTAAAACCA-CAGATCTTATCTCCCTAA-
1 CCAGATCTTATCTCCCT-AAGCAGTAGTGGAGCAGACGAAAAAAACCA-ATCCTATCTCCCTAAG
** * *
32024089 --GCAGT--AGTGGAGCAGATCGCA
64 TTGCAGTGGAGTGGATTAAAAC-CA
* * *
32024110 TCTAG-TCTTATCTCCCTAAGCAGTAGTTGAGCAGACGAAAAAAATCAATCCTATCTCCCTGAAG
1 -CCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCT-AAG
32024174 TTGCAGTGGAGTGGATTAAAACCA
64 TTGCAGTGGAGTGGATTAAAACCA
32024198 -CAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 CCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
32024232 TCGCATCCAG
Statistics
Matches: 213, Mismatches: 55, Indels: 40
0.69 0.18 0.13
Matches are distributed among these distances:
82 6 0.03
83 60 0.28
84 51 0.24
86 6 0.03
87 78 0.37
88 3 0.01
89 9 0.04
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (87 bp):
CCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTAAGTT
GCAGTGGAGTGGATTAAAACCA
Found at i:32023996 original size:40 final size:40
Alignment explanation
Indices: 32023948--32024386 Score: 220
Period size: 40 Copynumber: 10.4 Consensus size: 40
32023938 AAACCACAGA
* * * *
32023948 TCTTATCTCCCTAAGTAGTAGTGGAGCAGATTGCATCTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCCAG
* *
32023988 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAAAAACCAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG----AATCCAG
* ** *** ** *
32024031 TCCTATCTCCCTGAAGTTGTAGTGGAATGGATTAAAACCACAG
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGAATC-CAG
* *
32024074 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCCAG
* *
32024115 TCTTATCTCCCTAAGCAGTAGTTGAGCAGA-CGAAAAAAAT-CAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-----AATCCAG
* ** * ** ** *
32024158 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAG
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGAATC-CAG
*
32024201 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCCAG
* * *
32024242 TCTTATCTCCCTAAGCAGTAGCGGAGCAGA-CGAAAAAAAACCAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-----AATCCAG
* ** * ** ** *
32024286 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACAG
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGAATC-CAG
* *
32024329 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCCAG
*
32024370 TCTTATCTCTCTAAGCA
1 TCTTATCTCCCTAAGCA
32024387 TCCAGTGTTA
Statistics
Matches: 291, Mismatches: 78, Indels: 60
0.68 0.18 0.14
Matches are distributed among these distances:
39 5 0.02
40 102 0.35
41 10 0.03
42 15 0.05
43 72 0.25
44 75 0.26
45 12 0.04
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.25
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATCCAG
Found at i:32024034 original size:127 final size:127
Alignment explanation
Indices: 32023816--32024729 Score: 1078
Period size: 127 Copynumber: 7.0 Consensus size: 127
32023806 ACTTAAAATA
* * *
32023816 ACAGATATTATCTCCCTAAGCAGTAGTGGAGCCGATCGCTTCCAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
*
32023881 GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTCCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* * *
32023943 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATTGCATCTAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
32024008 GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAATGGATTAAAACC
66 GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
*
32024070 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
32024135 GTTGAGCAGACGAAAAAAATCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
32024197 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
*
32024262 GCGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
66 GTGGAGCAGACG-AAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* *
32024325 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCTCTAAGCA-TC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGT-
* * ** ** * * ** ***** *
32024389 CAGTGTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATC-CTATCTCCCTGAAGTT
65 -AGTG----------GAGCAG-A--CGA--A-AAAAACCAATCCTATCTCCCTGAAGTTGCAG-T
* *
32024453 GCAATGGAGTGGATTAAAACC
112 GGAGTGGA-----TTAAAACC
32024474 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
* *
32024539 GTGGAGGAGACAGAAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC
66 GTGGAGCAGAC-G--AAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
* ** * * * ** *
32024604 ATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCATATCAAGCCTTATCTTCCTGAAGTTGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCT-AAGCAGT
** * * * * *
32024669 AGCAGAGCAGGCTG-AAGAAACCAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAA
65 AGTGGAGCAGAC-GAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAA
32024730 TGATGGATCT
Statistics
Matches: 677, Mismatches: 79, Indels: 61
0.83 0.10 0.07
Matches are distributed among these distances:
127 314 0.46
128 153 0.23
129 3 0.00
130 59 0.09
131 13 0.02
135 16 0.02
136 8 0.01
137 1 0.00
138 5 0.01
139 5 0.01
140 1 0.00
141 1 0.00
142 1 0.00
143 7 0.01
144 17 0.03
148 4 0.01
149 68 0.10
150 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (127 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTA
GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
Found at i:32024038 original size:43 final size:43
Alignment explanation
Indices: 32023823--32024359 Score: 286
Period size: 44 Copynumber: 12.7 Consensus size: 43
32023813 ATAACAGATA
* ** *
32023823 TTATCTCCCTAAGCAGTAGTGGAGCCGATCG----CTTCCAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAACAACCAATC
*
32023863 TTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAACAACCAATC
* **** ** ** *
32023906 CTATCTCCCTGAAGTTCCAGTGGAGTGGATTAAAACCA-CAGATC
1 TTATCTCCCT-AAGCAGTAGTGGAGCAGACGAAAACAACCA-ATC
* * * * *
32023950 TTATCTCCCTAAGTAGTAGTGGAGCAGATTG----CATCTAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAACAACCAATC
*
32023990 TTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAACAACCAATC
* ** *** ** *
32024033 CTATCTCCCTGAAGTTGTAGTGGAATGGATTAAAACCA-CAGATC
1 TTATCTCCCT-AAGCAGTAGTGGAGCAGACGAAAACAACCA-ATC
* * *
32024077 TTATCTCCCTAAGCAGTAGTGGAGCAGATCG----CATCTAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAACAACCAATC
* * *
32024117 TTATCTCCCTAAGCAGTAGTTGAGCAGACGAAAAAAATCAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAACAACCAATC
* ** * ** ** *
32024160 CTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCA-CAGATC
1 TTATCTCCCT-AAGCAGTAGTGGAGCAGACGAAAACAACCA-ATC
* *
32024204 TTATCTCCCTAAGCAGTAGTGGAGCAGATCG----CATCCAGTC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAACAACCAATC
* *
32024244 TTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAAACCAATC
1 TTATCTCCCTAAGCAGTAGTGGAGCAGACG-AAAACAACCAATC
* ** * ** ** *
32024288 CTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCA-CAGATC
1 TTATCTCCCT-AAGCAGTAGTGGAGCAGACGAAAACAACCA-ATC
*
32024332 TTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TTATCTCCCTAAGCAGTAGTGGAGCAGA
32024360 TCGCATCCAG
Statistics
Matches: 363, Mismatches: 103, Indels: 59
0.69 0.20 0.11
Matches are distributed among these distances:
39 7 0.02
40 117 0.32
41 4 0.01
43 102 0.28
44 121 0.33
45 12 0.03
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (43 bp):
TTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAACAACCAATC
Found at i:32024272 original size:254 final size:255
Alignment explanation
Indices: 32023816--32024729 Score: 1283
Period size: 254 Copynumber: 3.5 Consensus size: 255
32023806 ACTTAAAATA
* * * *
32023816 ACAGATATTATCTCCCTAAGCAGTAGTGGAGCCGATCGCTTCCAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTCTTATCTCCCTAAGCAGTA
*
32023881 GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTCCAGTGGAGTGGATTAAAACCACA
66 GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACA
* * *
32023946 GATCTTATCTCCCTAAGTAGTAGTGGAGCAGATTGCATCTAGTCTTATCTCCCTAAGCAGTAGTG
131 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGTG
* *
32024011 GAGCAGACG-AAAAAAACCAATCCTATCTCCCTGAAGTTGTAGTGGAATGGATTAAAACC
196 GAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
32024070 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTCTTATCTCCCTAAGCAGTA
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTCTTATCTCCCTAAGCAGTA
* *
32024135 GTTGAGCAGACGAAAAAAATCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACA
66 GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACA
*
32024200 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGCG
131 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGTG
32024265 GAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
196 GAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
*
32024325 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCTCTAAGCATCC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGC--A--G-AT-C-G-C--A----TCT-AG--T-C
32024390 AGTGTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGC
48 ----TTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGC
*
32024455 AATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGT
109 AGTGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGT
*
32024520 CTTATCTCCCTAAGCAGTAGTGGAGGAGACAGAAAAAAAAACCAATCCTATCTCCCTGAAGTTGC
174 CTTATCTCCCTAAGCAGTAGTGGAGCAGAC-G-AAAAAAAACCAATCCTATCTCCCTGAAGTTGC
*
32024585 AGTGGAGCGGATTAAAACC
237 AGTGGAGTGGATTAAAACC
* ** * * * ** *
32024604 ATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCATATCAAGCCTTATCTTCCTGAAGTTGC
1 ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTCTTATCTCCCT-AAGCAGT
** * * * * *
32024669 AGCAGAGCAGGCTG-AAGAAACCAATCCTATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAA
65 AGTGGAGCAGAC-GAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAA
32024730 TGATGGATCT
Statistics
Matches: 595, Mismatches: 38, Indels: 50
0.87 0.06 0.07
Matches are distributed among these distances:
254 193 0.32
255 79 0.13
257 10 0.02
258 55 0.09
259 2 0.00
260 2 0.00
261 2 0.00
262 1 0.00
263 1 0.00
264 2 0.00
265 3 0.01
269 4 0.01
270 2 0.00
272 1 0.00
273 2 0.00
274 2 0.00
275 1 0.00
277 152 0.26
278 1 0.00
279 80 0.13
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (255 bp):
ACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCTAGTCTTATCTCCCTAAGCAGTA
GTGGAGCAGACGAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACCACA
GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACGAAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAACC
Found at i:32024390 original size:22 final size:22
Alignment explanation
Indices: 32024362--32024408 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
32024352 GGAGCAGATC
*
32024362 GCATCCAGTCTTATCTCTCTAA
1 GCATCCAGTCTTATCTCCCTAA
*
32024384 GCATCCAGTGTTATCTCCCTAA
1 GCATCCAGTCTTATCTCCCTAA
32024406 GCA
1 GCA
32024409 GTAGTGGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.32
Consensus pattern (22 bp):
GCATCCAGTCTTATCTCCCTAA
Found at i:32024505 original size:149 final size:150
Alignment explanation
Indices: 32024234--32024535 Score: 552
Period size: 149 Copynumber: 2.0 Consensus size: 150
32024224 GGAGCAGATC
32024234 GCATCCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTG
1 GCATCCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTG
* *
32024299 AAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGC
66 AAGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGC
*
32024364 ATCCAGTCTTATCTCTCTAA
131 ATCCAGTCTTATCTCCCTAA
* *
32024384 GCATCCAGTGTTATCTCCCTAAGCAGTAGTGGAGCAGACG-AAAAAAACCAATCCTATCTCCCTG
1 GCATCCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTG
32024448 AAGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGC
66 AAGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGC
32024513 ATCCAGTCTTATCTCCCTAA
131 ATCCAGTCTTATCTCCCTAA
32024533 GCA
1 GCA
32024536 GTAGTGGAGG
Statistics
Matches: 147, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
149 109 0.74
150 38 0.26
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (150 bp):
GCATCCAGTCTTATCTCCCTAAGCAGTAGCGGAGCAGACGAAAAAAAACCAATCCTATCTCCCTG
AAGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGC
ATCCAGTCTTATCTCCCTAA
Found at i:32024614 original size:130 final size:128
Alignment explanation
Indices: 32024384--32024745 Score: 476
Period size: 130 Copynumber: 2.8 Consensus size: 128
32024374 ATCTCTCTAA
*
32024384 GCATCCAGTGTTATCTCCCTAAGCAGTAGTGGAGCAGAC-GAAAAAAACCAATCCTATCTCCCTG
1 GCATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTG
* * *
32024448 AAGTTGCAATGGAGTGGATTAAAACCACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
66 AAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
32024511 GCATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGGAGACAGAAAAAAAAACCAATCCTATCTCCC
1 GCATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAG--AAAAAAACCAATCCTATCTCCC
32024576 TGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
64 TGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
** * * * ** * ** * * * *
32024641 ATATCAAGCCTTATCTTCCTGAAGTTGCAGCAGAGCAGGCTG-AAGAAACCAATCCTATCTTCCT
1 GCATCCAGTCTTATCTCCCT-AAGCAGTAGTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCT
* ** *
32024705 GAAGTTGCAGTGAAGCGGATTAAAATGATGGATCTTATCTC
65 GAAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTC
32024746 TCTGAAGTTG
Statistics
Matches: 207, Mismatches: 24, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
127 37 0.18
128 58 0.28
130 99 0.48
131 13 0.06
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.24
Consensus pattern (128 bp):
GCATCCAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAAAAAAACCAATCCTATCTCCCTG
AAGTTGCAGTGGAGCGGATTAAAACCATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
Found at i:32024620 original size:44 final size:43
Alignment explanation
Indices: 32024438--32024764 Score: 127
Period size: 44 Copynumber: 7.6 Consensus size: 43
32024428 AAACCAATCC
* *
32024438 TATCTCCCTGAAGTTGCAATGGAGTGGATTAAAACCACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
** * * *** *
32024482 TATCTCCCT-AAGCAGTAGTGGAGCAGATCGCATCC-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
** * * ** *
32024522 TATCTCCCT-AAGCAGTAGTGGAGGAGACAGAAAAAAAAACC-A-ATCC
1 TATCTCCCTGAAGTTGCAGT---GGAG-C-G-GATTAAAACCAAGATCT
32024568 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
** * * * * * *
32024612 TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCATATCAAG-CCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
* ** * * *
32024652 TATCTTCCTGAAGTTGCAGCAGAGCAGGCTGAAGAAACC-A-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGC-GGAT-TA-AAACCAAGATCT
* * ** *
32024696 TATCTTCCTGAAGTTGCAGTGAAGCGGATTAAAATGATGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCA-AGATCT
* *
32024740 TATCTCTCTGAAGTTGCAGTAGAGC
1 TATCTCCCTGAAGTTGCAGTGGAGC
32024765 AGATCACATC
Statistics
Matches: 203, Mismatches: 60, Indels: 40
0.67 0.20 0.13
Matches are distributed among these distances:
40 32 0.16
41 24 0.12
42 8 0.04
43 39 0.19
44 74 0.36
45 3 0.01
46 16 0.08
47 7 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAAGATCT
Found at i:32024654 original size:40 final size:40
Alignment explanation
Indices: 32024480--32024656 Score: 104
Period size: 40 Copynumber: 4.2 Consensus size: 40
32024470 AACCACAGAT
** * *
32024480 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCCAGT
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
* ** *
32024520 CTTATCTCCCTAAGCAGTAGTGGAGGAGA-CAGAAAAAAAAAC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATC---AAATCAAGC
** * * * * *
32024562 CAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCATAGAT
1 C--T--TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCAAATCA-AG-C
*
32024610 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCATATCAAGC
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
32024650 CTTATCT
1 CTTATCT
32024657 TCCTGAAGTT
Statistics
Matches: 99, Mismatches: 26, Indels: 24
0.66 0.17 0.16
Matches are distributed among these distances:
39 1 0.01
40 35 0.35
41 2 0.02
42 8 0.08
43 14 0.14
44 10 0.10
46 14 0.14
47 14 0.14
48 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (40 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAATCAAGC
Found at i:32026415 original size:18 final size:20
Alignment explanation
Indices: 32026392--32026434 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
32026382 CATATACATG
32026392 CATACATTTT-A-TAATACA
1 CATACATTTTAATTAATACA
32026410 CATACATTTTAATTAATACA
1 CATACATTTTAATTAATACA
32026430 CATAC
1 CATAC
32026435 TTATACATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.43
19 1 0.04
20 12 0.52
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.37
Consensus pattern (20 bp):
CATACATTTTAATTAATACA
Found at i:32028591 original size:111 final size:110
Alignment explanation
Indices: 32028428--32028645 Score: 364
Period size: 111 Copynumber: 2.0 Consensus size: 110
32028418 GAAATTCGAG
* *
32028428 AGGATATTTGGCTATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* * *
32028493 AAATTTCTCAAATGCAAAACATTGTCTTATTTCGAAAATTTTTAAA
66 AAATTTCCCAAACGCAAAACATTGCCTTATTT-GAAAATTTTTAAA
*
32028539 AGGATATTTAGCCATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
1 AGGATATTTAGCCATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
*
32028604 GAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
66 AAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTT
32028646 GTTTTTGATA
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
110 10 0.10
111 90 0.90
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (110 bp):
AGGATATTTAGCCATTTGGTTAAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
AAATTTCCCAAACGCAAAACATTGCCTTATTTGAAAATTTTTAAA
Found at i:32028784 original size:18 final size:17
Alignment explanation
Indices: 32028753--32028788 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
32028743 ATATATAATG
*
32028753 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
32028770 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
32028788 A
1 A
32028789 TAAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.72, C:0.08, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:32029131 original size:25 final size:25
Alignment explanation
Indices: 32029074--32029131 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
32029064 GTAAGTGTAC
* *
32029074 ATATATAT-TACAAAAAGTATGTGT
1 ATATATATATACAAAAAATATATGT
*
32029098 GTA-AGTATATACAAAAAATATATGT
1 ATATA-TATATACAAAAAATATATGT
32029123 ATATATATA
1 ATATATATA
32029132 AAAAAACGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
23 1 0.04
24 5 0.19
25 20 0.74
26 1 0.04
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.36
Consensus pattern (25 bp):
ATATATATATACAAAAAATATATGT
Found at i:32029147 original size:22 final size:23
Alignment explanation
Indices: 32029103--32029147 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
32029093 TGTGTGTAAG
* *
32029103 TATATACAAAAAATATATGTATA
1 TATATACAAAAAACATATATATA
*
32029126 TATATA-AAAAAACGTATATATA
1 TATATACAAAAAACATATATATA
32029148 AGGGCAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (23 bp):
TATATACAAAAAACATATATATA
Found at i:32029221 original size:3 final size:3
Alignment explanation
Indices: 32029157--32029204 Score: 69
Period size: 3 Copynumber: 16.0 Consensus size: 3
32029147 AAGGGCAATT
* * *
32029157 ATA ATA ATG ATA ATG ATA ATA ATA ATA ATA ATA ACA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32029205 TTATTAAAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:32031445 original size:20 final size:20
Alignment explanation
Indices: 32031420--32031466 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
32031410 AAAAAAAAAA
*
32031420 TCAAAATAATTT-TCAAAATT
1 TCAAAAT-ATTTATAAAAATT
*
32031440 TTAAAATATTTATAAAAATT
1 TCAAAATATTTATAAAAATT
32031460 TCAAAAT
1 TCAAAAT
32031467 TTATATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.40
Consensus pattern (20 bp):
TCAAAATATTTATAAAAATT
Found at i:32035515 original size:17 final size:18
Alignment explanation
Indices: 32035493--32035526 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32035483 TTTTCAAGTT
32035493 TATAATATATAT-ATATA
1 TATAATATATATGATATA
*
32035510 TATAATCTATATGATAT
1 TATAATATATATGATAT
32035527 GAAAAGAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (18 bp):
TATAATATATATGATATA
Found at i:32036899 original size:21 final size:21
Alignment explanation
Indices: 32036857--32036899 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
32036847 TTTAAAAAAA
* * * *
32036857 TAAATTTTATTTTATGACTTT
1 TAAATATTATTTGATAAATTT
32036878 TAAATATTATTTGATAAATTT
1 TAAATATTATTTGATAAATTT
32036899 T
1 T
32036900 TAATGTCTTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (21 bp):
TAAATATTATTTGATAAATTT
Found at i:32039177 original size:19 final size:19
Alignment explanation
Indices: 32039153--32039191 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
32039143 TCTGCATTGT
*
32039153 TGAATA-ATAAGTTTTTAAA
1 TGAATAGATAA-TTTATAAA
32039172 TGAATAGATAATTTATAAA
1 TGAATAGATAATTTATAAA
32039191 T
1 T
32039192 CAACCGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (19 bp):
TGAATAGATAATTTATAAA
Found at i:32041838 original size:27 final size:27
Alignment explanation
Indices: 32041808--32041861 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
32041798 CATGAAAGAA
32041808 ATGGAAATTGTAAATTAATAAAGTATG
1 ATGGAAATTGTAAATTAATAAAGTATG
32041835 ATGGAAATTGTAAATTAATAAAGTATG
1 ATGGAAATTGTAAATTAATAAAGTATG
32041862 TACAAGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.33
Consensus pattern (27 bp):
ATGGAAATTGTAAATTAATAAAGTATG
Found at i:32045052 original size:11 final size:10
Alignment explanation
Indices: 32045018--32045051 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
32045008 TAAAGTATTT
*
32045018 AAAAGTTCAA
1 AAAATTTCAA
*
32045028 CAAATTTCAA
1 AAAATTTCAA
32045038 AAAATTTCAA
1 AAAATTTCAA
32045048 AAAA
1 AAAA
32045052 ACTTATTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.24
Consensus pattern (10 bp):
AAAATTTCAA
Found at i:32047362 original size:3 final size:3
Alignment explanation
Indices: 32047356--32047389 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
32047346 GGAAAAAAAT
32047356 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
32047390 AGGAGGTGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:32059938 original size:15 final size:15
Alignment explanation
Indices: 32059920--32059961 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
32059910 TTGAAAATTC
32059920 AATATACAAATTTTG
1 AATATACAAATTTTG
* *
32059935 AATATTCAATTTTTG
1 AATATACAAATTTTG
32059950 AA-ATAC-AATTTT
1 AATATACAAATTTT
32059962 ACAATAGGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 5 0.22
14 3 0.13
15 15 0.65
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (15 bp):
AATATACAAATTTTG
Found at i:32064859 original size:24 final size:24
Alignment explanation
Indices: 32064832--32064877 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
32064822 GCAGCAAACA
*
32064832 AAAATCAAAG-AAGAAGGAAAAAAG
1 AAAATAAAAGAAAGAA-GAAAAAAG
32064856 AAAATAAAAGAAAGAAGAAAAA
1 AAAATAAAAGAAAGAAGAAAAA
32064878 TGAAGAAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (24 bp):
AAAATAAAAGAAAGAAGAAAAAAG
Found at i:32077929 original size:98 final size:98
Alignment explanation
Indices: 32077760--32077954 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
32077750 ATACAATAAA
32077760 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATC
32077825 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* * *
32077858 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATC
*
32077923 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
32077955 CATGATTTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:32079948 original size:44 final size:45
Alignment explanation
Indices: 32079885--32080487 Score: 328
Period size: 45 Copynumber: 13.7 Consensus size: 45
32079875 GATCTACCAG
* *
32079885 TCTGCTCTACTGCAACTTCAGGGAGATAGGA-TTGTCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCGGCTTTAA
* * ** * *
32079929 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCGGCTTTAA
* ** *
32079974 TCTGC-CTCACTGCAACTTCA-GGAGGATAAGATTTGTTTTGC-TTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTG-TCGGCTTTAA
* *
32080019 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGAT--GC---GA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TCGGCTTTAA
* * * * *
32080060 TCTACT-CTCTGCAACTTCAGGGAGTTAAGA-TCTG-AGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGTCGGCTTTAA
** * * * * *
32080103 TCCACTCTACTGTAACTTTAGGGAGATAGGA-TTATCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCGGCTTTAA
* * * * ** * *
32080147 TTTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCGGCTTTAA
** *
32080192 TCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTTGC-TTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTG-TCGGCTTTAA
* * * * *
32080237 TCTGCTTCACTGCAACTTTAGGGAGATAAGACTAGAT-GCGATCT-A
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TCG-GCTTTAA
* *
32080282 T-T-CT---CTGCAACTTCAGGGAGATAAGA-TCTG-AGGTTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-TGTCGGCTTTAA
** * *
32080321 TCCACTCCACTGTAACTTCAGGGAGATAGGA-TTGTCGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCGGCTTTAA
* * * ** *
32080365 TCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCGGCTTTAA
* * * ** *
32080410 CCTGC-CTCACTGCAACTTCA-GGAGGATAAAACTCGCTTTG-TTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTG-TCGGCTTTAA
*
32080455 TCTGCTTCACTGCAACTTCAGGGAGATAAGACT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT
32080488 AGATGCGATC
Statistics
Matches: 433, Mismatches: 89, Indels: 73
0.73 0.15 0.12
Matches are distributed among these distances:
38 3 0.01
39 5 0.01
40 46 0.11
41 7 0.02
43 13 0.03
44 149 0.34
45 197 0.45
46 13 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTCGGCTTTAA
Found at i:32080267 original size:218 final size:218
Alignment explanation
Indices: 32079893--32080569 Score: 1156
Period size: 218 Copynumber: 3.1 Consensus size: 218
32079883 AGTCTGCTCT
* *
32079893 ACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
1 ACTGTAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
* *
32079958 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGATTTGTTTTGCTTAGTCTG
66 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTG
* *
32080023 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAGTTAA
131 CTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAGATAA
*
32080088 GATCTGAGGTTTTAATCCACTCT
196 GATCTGAGGTTTTAATCCACTCC
* * *
32080111 ACTGTAACTTTAGGGAGATAGGATTATCGGCTTTAATTTGCTCCACTGTAACTTCAGGGAGATAA
1 ACTGTAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
32080176 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTG
66 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTG
* *
32080241 CTTCACTGCAACTTTAGGGAGATAAGACTAGATGCGATCTATTCTCTGCAACTTCAGGGAGATAA
131 CTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAGATAA
32080306 GATCTGAGGTTTTAATCCACTCC
196 GATCTGAGGTTTTAATCCACTCC
32080329 ACTGTAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
1 ACTGTAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
* * * * *
32080394 GATTTGCCATCTTTAGCCTGCCTCACTGCAACTTCAGGAGGATAAAACTCGCTTTGTTTAGTCTG
66 GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTG
* *
32080459 CTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
131 CTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAGATAA
*
32080524 GATCTGAGGTTTTAATCCGCTCC
196 GATCTGAGGTTTTAATCCACTCC
* *
32080547 ACTGTAACTTTAAGGAGATAGGA
1 ACTGTAACTTCAGGGAGATAGGA
32080570 CTCAATTTAT
Statistics
Matches: 432, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
218 432 1.00
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (218 bp):
ACTGTAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAA
GATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTG
CTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGGGAGATAA
GATCTGAGGTTTTAATCCACTCC
Found at i:32092137 original size:98 final size:98
Alignment explanation
Indices: 32091968--32092162 Score: 354
Period size: 98 Copynumber: 2.0 Consensus size: 98
32091958 ATACAATAAA
32091968 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATC
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATC
32092033 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
* * *
32092066 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATC
*
32092131 CCTTTAGAATCTCAAACTCGGAATATTTCCTT
66 CCTTTAGAATCCCAAACTCGGAATATTTCCTT
32092163 CATGATTTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATC
CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
Found at i:32094993 original size:13 final size:15
Alignment explanation
Indices: 32094963--32094995 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
32094953 ATAAACTGCC
32094963 TTTATAAATAACAAA
1 TTTATAAATAACAAA
32094978 TTTATAAA-AA-AAA
1 TTTATAAATAACAAA
32094991 TTTAT
1 TTTAT
32094996 GTAAACCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 2 0.11
15 8 0.44
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (15 bp):
TTTATAAATAACAAA
Found at i:32105210 original size:23 final size:24
Alignment explanation
Indices: 32105180--32105224 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
32105170 AATGTTTTCC
32105180 GTAAAATGATTT-CTGGAAAATGT
1 GTAAAATGATTTACTGGAAAATGT
32105203 GTAAAATGATTTACTGGAAAAT
1 GTAAAATGATTTACTGGAAAAT
32105225 ATTTTCTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.42, C:0.04, G:0.20, T:0.33
Consensus pattern (24 bp):
GTAAAATGATTTACTGGAAAATGT
Found at i:32105408 original size:22 final size:24
Alignment explanation
Indices: 32105382--32105433 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
32105372 ATGATTTATT
32105382 TATAAATAA-A-TCAA-ATT-AAA
1 TATAAATAATACTCAATATTAAAA
32105402 TATATAATAATACTCAATTATTAAAA
1 TATA-AATAATACTCAA-TATTAAAA
32105428 TATAAA
1 TATAAA
32105434 AGCATCGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 4 0.15
21 5 0.19
22 1 0.04
23 4 0.15
25 5 0.19
26 7 0.27
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.35
Consensus pattern (24 bp):
TATAAATAATACTCAATATTAAAA
Found at i:32107979 original size:11 final size:11
Alignment explanation
Indices: 32107947--32107981 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
32107937 TCAAGGATAG
32107947 GGGAAGGGGAA
1 GGGAAGGGGAA
32107958 GGGGAAGGGGAA
1 -GGGAAGGGGAA
*
32107970 GGGAAAGGGAA
1 GGGAAGGGGAA
32107981 G
1 G
32107982 ATCAGTGTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (11 bp):
GGGAAGGGGAA
Found at i:32107980 original size:6 final size:6
Alignment explanation
Indices: 32107945--32107978 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
32107935 TGTCAAGGAT
*
32107945 AGGGGA AGGGGA AGGGGA AGGGGA AGGGAA AGGG
1 AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGG
32107979 AAGATCAGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (6 bp):
AGGGGA
Found at i:32108571 original size:30 final size:32
Alignment explanation
Indices: 32108537--32108607 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 32
32108527 TTGCCCAAGA
* *
32108537 GTAAATATTTAAAA-TTTGAGGGGTTAA-AGT
1 GTAAATATTTAAAATTTTGAAGGATTAATAGT
* *
32108567 GTAAATA-TGAAAATTTTGAAGGATTAATTGT
1 GTAAATATTTAAAATTTTGAAGGATTAATAGT
32108598 GTAAATATTT
1 GTAAATATTT
32108608 TAAGGGTGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
29 5 0.15
30 18 0.55
31 9 0.27
32 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (32 bp):
GTAAATATTTAAAATTTTGAAGGATTAATAGT
Found at i:32119129 original size:25 final size:25
Alignment explanation
Indices: 32119095--32119145 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
32119085 AGGGTTTTTC
32119095 CTCTTTTTGGGTGAAATTAGATTGT
1 CTCTTTTTGGGTGAAATTAGATTGT
32119120 CTCTTTTTGGGTGAAATTAGATTGT
1 CTCTTTTTGGGTGAAATTAGATTGT
32119145 C
1 C
32119146 GAAATTTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.10, G:0.24, T:0.47
Consensus pattern (25 bp):
CTCTTTTTGGGTGAAATTAGATTGT
Found at i:32119153 original size:25 final size:25
Alignment explanation
Indices: 32119100--32119159 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
32119090 TTTTCCTCTT
****
32119100 TTTGGGTGAAATTAGATTGTCTCTT
1 TTTGGGTGAAATTAGATTGTCGAAA
32119125 TTTGGGTGAAATTAGATTGTCGAAA
1 TTTGGGTGAAATTAGATTGTCGAAA
32119150 TTTGGG-GAAA
1 TTTGGGTGAAA
32119160 ACTATCTTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
24 4 0.13
25 27 0.87
ACGTcount: A:0.27, C:0.05, G:0.28, T:0.40
Consensus pattern (25 bp):
TTTGGGTGAAATTAGATTGTCGAAA
Found at i:32120617 original size:35 final size:35
Alignment explanation
Indices: 32120551--32120618 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 35
32120541 GTTATGGGCC
*
32120551 CACATGCCCGTGTGGACCCTTACGCTTGTGTCGCT
1 CACATGCCCGTGTGGACCCATACGCTTGTGTCGCT
32120586 CACATGCCCGTGTAGG-CCCATACG-TTCGTGTCG
1 CACATGCCCGTGT-GGACCCATACGCTT-GTGTCG
32120619 TCCACACGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 2 0.07
35 26 0.87
36 2 0.07
ACGTcount: A:0.13, C:0.34, G:0.26, T:0.26
Consensus pattern (35 bp):
CACATGCCCGTGTGGACCCATACGCTTGTGTCGCT
Found at i:32143488 original size:15 final size:14
Alignment explanation
Indices: 32143469--32143503 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
32143459 TAATAGGATC
32143469 ATAATTAAAAATAA
1 ATAATTAAAAATAA
*
32143483 ATTAATAAAAAATAA
1 A-TAATTAAAAATAA
32143498 ATAATT
1 ATAATT
32143504 TAATAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
ATAATTAAAAATAA
Found at i:32148823 original size:16 final size:16
Alignment explanation
Indices: 32148804--32148837 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32148794 ATAAAAGACT
32148804 AAAAAATAAAAAATAA
1 AAAAAATAAAAAATAA
* *
32148820 AAAACATATAAAATAA
1 AAAAAATAAAAAATAA
32148836 AA
1 AA
32148838 CCTATCACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAAAATAAAAAATAA
Found at i:32151634 original size:31 final size:30
Alignment explanation
Indices: 32151574--32151649 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 30
32151564 ATTAGGGATC
* *
32151574 TAGTCCTTATAC-TTTAATTTGATCAATTT
1 TAGTCTTTATACTTTTAAATTGATCAATTT
* *
32151603 TAGTTTTTATACTTTTCAAATTGGTCAATTT
1 TAGTCTTTATACTTTT-AAATTGATCAATTT
*
32151634 TAGTCTTTGTACTTTT
1 TAGTCTTTATACTTTT
32151650 TGAATTTTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 10 0.26
30 3 0.08
31 26 0.67
ACGTcount: A:0.24, C:0.12, G:0.09, T:0.55
Consensus pattern (30 bp):
TAGTCTTTATACTTTTAAATTGATCAATTT
Found at i:32158914 original size:27 final size:29
Alignment explanation
Indices: 32158883--32158951 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 29
32158873 TATTAACTTA
32158883 ATTTAATTATATTAT-AT-TGTATAATTT-
1 ATTTAATTATATTATCATAT-TATAATTTG
32158910 ATTTAATT-TAATTATCATATTATAATTTG
1 ATTTAATTAT-ATTATCATATTATAATTTG
32158939 ATTTAATATATAT
1 ATTTAAT-TATAT
32158952 GAATTAATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
26 1 0.03
27 13 0.36
28 10 0.28
29 8 0.22
30 3 0.08
31 1 0.03
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (29 bp):
ATTTAATTATATTATCATATTATAATTTG
Found at i:32162697 original size:16 final size:18
Alignment explanation
Indices: 32162658--32162691 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32162648 TAAGTTTATA
32162658 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
32162675 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
32162692 AATTTAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:32163664 original size:17 final size:18
Alignment explanation
Indices: 32163625--32163666 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
32163615 AACTGATGTC
*
32163625 ATTTACTTTTAAAAATAT
1 ATTTATTTTTAAAAATAT
*
32163643 TTTTATTTTTAAAAATA-
1 ATTTATTTTTAAAAATAT
32163660 ATTTATT
1 ATTTATT
32163667 CAATTGAGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTATTTTTAAAAATAT
Found at i:32165933 original size:21 final size:22
Alignment explanation
Indices: 32165909--32165964 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 22
32165899 TAAAAATTAT
32165909 AAAAATATTAATAAATTTT-AG
1 AAAAATATTAATAAATTTTAAG
*
32165930 AAAAATATTAAT---TTTTAAT
1 AAAAATATTAATAAATTTTAAG
32165949 AAAAATATTAA-AAATT
1 AAAAATATTAATAAATT
32165965 ATATTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
18 4 0.13
19 12 0.40
21 14 0.47
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAAATATTAATAAATTTTAAG
Found at i:32165944 original size:17 final size:19
Alignment explanation
Indices: 32165909--32165959 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
32165899 TAAAAATTAT
32165909 AAAAATATTAATAAATTTT-AG
1 AAAAATATTAAT---TTTTAAG
*
32165930 AAAAATATTAATTTTTAAT
1 AAAAATATTAATTTTTAAG
32165949 AAAAATATTAA
1 AAAAATATTAA
32165960 AAATTATATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 4 0.14
19 12 0.43
21 12 0.43
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAAAATATTAATTTTTAAG
Found at i:32165974 original size:29 final size:30
Alignment explanation
Indices: 32165941--32165997 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
32165931 AAAATATTAA
*
32165941 TTTTTAATAAAAAT-ATTAAAAATTATATT
1 TTTTTAATAAAAATCATAAAAAATTATATT
* *
32165970 TTTTTTATAAATATCATAAAAAATTATA
1 TTTTTAATAAAAATCATAAAAAATTATA
32165998 AAATTATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 12 0.50
30 12 0.50
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (30 bp):
TTTTTAATAAAAATCATAAAAAATTATATT
Found at i:32165998 original size:19 final size:18
Alignment explanation
Indices: 32165974--32166031 Score: 71
Period size: 19 Copynumber: 3.1 Consensus size: 18
32165964 TATATTTTTT
32165974 TTATAAATATCATAAAAAA
1 TTATAAA-ATCATAAAAAA
* **
32165993 TTATAAAATTATAAAATT
1 TTATAAAATCATAAAAAA
32166011 TTATAAAAATCATAAAAAA
1 TTAT-AAAATCATAAAAAA
32166030 TT
1 TT
32166032 GATGACCCCT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 12 0.38
19 20 0.62
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.36
Consensus pattern (18 bp):
TTATAAAATCATAAAAAA
Found at i:32166001 original size:38 final size:36
Alignment explanation
Indices: 32165947--32166031 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 36
32165937 TTAATTTTTA
*** *
32165947 ATAAAAATATTAAAAATTATATTTTTTTTATAAATATC
1 ATAAAAA-ATTAAAAATTATA-AAATTTTATAAAAATC
32165985 ATAAAAAATTATAAAATTATAAAATTTTATAAAAATC
1 ATAAAAAATTA-AAAATTATAAAATTTTATAAAAATC
32166022 ATAAAAAATT
1 ATAAAAAATT
32166032 GATGACCCCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
37 26 0.62
38 16 0.38
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (36 bp):
ATAAAAAATTAAAAATTATAAAATTTTATAAAAATC
Found at i:32166230 original size:36 final size:36
Alignment explanation
Indices: 32166179--32166257 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
32166169 ATAAAAGTTT
* *
32166179 TTTACAAAATTTATATTTCTTTACATTT-TGTATAA
1 TTTATAAAATTTATATTTCTTTACATTTCTATATAA
* * *
32166214 TTTATAAAATTTTATATTTTTTTATATTTCTATATAT
1 TTTATAAAA-TTTATATTTCTTTACATTTCTATATAA
32166251 TTTATAA
1 TTTATAA
32166258 TTTTTTACAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 8 0.22
36 17 0.46
37 12 0.32
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.59
Consensus pattern (36 bp):
TTTATAAAATTTATATTTCTTTACATTTCTATATAA
Found at i:32166270 original size:28 final size:27
Alignment explanation
Indices: 32166222--32166281 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
32166212 AATTTATAAA
* *
32166222 ATTTTATATTTTTTTATATTTCTATAT
1 ATTTTATAATTTTTTAAATTTCTATAT
* *
32166249 ATTTTATAATTTTTTACAATTTTTTTAT
1 ATTTTATAATTTTTTA-AATTTCTATAT
32166277 ATTTT
1 ATTTT
32166282 TACGATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (27 bp):
ATTTTATAATTTTTTAAATTTCTATAT
Found at i:32166272 original size:19 final size:18
Alignment explanation
Indices: 32166250--32166300 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
32166240 TTTCTATATA
32166250 TTTTATAATTTTTTACAAT
1 TTTTAT-ATTTTTTACAAT
* *
32166269 TTTTTTATATTTTTACGAT
1 TTTTATAT-TTTTTACAAT
32166288 TTTTATATTTTTT
1 TTTTATATTTTTT
32166301 CTAATTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTATATTTTTTACAAT
Found at i:32166282 original size:46 final size:45
Alignment explanation
Indices: 32166188--32166327 Score: 113
Period size: 46 Copynumber: 3.0 Consensus size: 45
32166178 TTTTACAAAA
* * *
32166188 TTTATATTTCTTTACATTTTGTATAA-TTTATAAAATTTTATATTTT
1 TTTATATTTCTATATA-TTT-TATAATTTTATAAAATTTTATATATT
* * *
32166234 TTTATATTTCTATATATTTTATAATTTTTTACAATTTTTTTATATT
1 TTTATATTTCTATATATTTTATAATTTTATA-AAATTTTATATATT
* * * * *
32166280 TTTACGATTTTTATATTTTTTCTAATTATTAATAAATTTTTA-ATATT
1 TTTA-TATTTCTATATATTTTATAATT-TT-ATAAAATTTTATATATT
32166327 T
1 T
32166328 GAATTTTTAT
Statistics
Matches: 77, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
44 5 0.06
45 8 0.10
46 29 0.38
47 24 0.31
48 9 0.12
49 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (45 bp):
TTTATATTTCTATATATTTTATAATTTTATAAAATTTTATATATT
Found at i:32166292 original size:38 final size:37
Alignment explanation
Indices: 32166229--32166300 Score: 101
Period size: 38 Copynumber: 1.9 Consensus size: 37
32166219 AAAATTTTAT
*
32166229 ATTTTTTTATATTTCTATATATTTTATAATTTTTTACA
1 ATTTTTTTATATTTCTAGATATTTTAT-ATTTTTTACA
*
32166267 ATTTTTTTATATTTTTACGAT-TTTTATATTTTTT
1 ATTTTTTTATATTTCTA-GATATTTTATATTTTTT
32166301 CTAATTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
37 7 0.23
38 22 0.71
39 2 0.06
ACGTcount: A:0.25, C:0.04, G:0.01, T:0.69
Consensus pattern (37 bp):
ATTTTTTTATATTTCTAGATATTTTATATTTTTTACA
Done.