Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 112 of 172
Found at i:32166300 original size:10 final size:10
Alignment explanation
Indices: 32166223--32166282 Score: 54
Period size: 10 Copynumber: 6.2 Consensus size: 10
32166213 ATTTATAAAA
32166223 TTTTATATTT
1 TTTTATATTT
32166233 TTTTATA--T
1 TTTTATATTT
* *
32166241 TTCTATA-TA
1 TTTTATATTT
*
32166250 TTTTATAATT
1 TTTTATATTT
*
32166260 TTTTACAATTT
1 TTTTA-TATTT
32166271 TTTTATATTT
1 TTTTATATTT
32166281 TT
1 TT
32166283 ACGATTTTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
8 7 0.17
9 6 0.15
10 19 0.47
11 8 0.20
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTATATTT
Found at i:32166521 original size:89 final size:90
Alignment explanation
Indices: 32166408--32166582 Score: 273
Period size: 90 Copynumber: 2.0 Consensus size: 90
32166398 TAAAAGCATA
*
32166408 GGCTTAATTGCTTTTCTTGAAAAA-GTTTTAGGG-TATTTTTGATGCATTTTGAAAGTTCAAGTA
1 GGCTTAATTGCTTTTCTTGAAAAAGGTTTGAGGGCT-TTTTTGATGCATTTTGAAAGTTCAAGTA
*
32166471 CCCAATTGAGTGCAAAAAAAGGTAGG
65 CCCAAATGAGTGCAAAAAAAGGTAGG
* * *
32166497 GGCTTAATTGCTTTTTTTGGAAAAGGTTTGAGGGCTTTTTTGATTCATTTTGAAAGTTCAAGTAC
1 GGCTTAATTGCTTTTCTTGAAAAAGGTTTGAGGGCTTTTTTGATGCATTTTGAAAGTTCAAGTAC
*
32166562 CCAAATGAGTGGAAAAAAAGG
66 CCAAATGAGTGCAAAAAAAGG
32166583 ACTTAATTGT
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
89 22 0.28
90 55 0.71
91 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (90 bp):
GGCTTAATTGCTTTTCTTGAAAAAGGTTTGAGGGCTTTTTTGATGCATTTTGAAAGTTCAAGTAC
CCAAATGAGTGCAAAAAAAGGTAGG
Found at i:32166610 original size:80 final size:84
Alignment explanation
Indices: 32166409--32166616 Score: 246
Period size: 90 Copynumber: 2.4 Consensus size: 84
32166399 AAAAGCATAG
* *
32166409 GCTTAATTGCTTTTCTTGAAAAAGTTTTAGGG-TATTTTTGATGCATTTTGAAAGTTCAAGTACC
1 GCTTAATTGCTTTTTTTG--AAAGTTTGAGGGCT-TTTTTGATGCATTTTGAAAGTTCAAGTACC
*
32166473 CAATTGAGTGCAAAAAAAGGTA
63 CAAATGAGTGCAAAAAAAGGTA
*
32166495 GGGGCTTAATTGCTTTTTTTGGAAAAGGTTTGAGGGCTTTTTTGATTCATTTTGAAAGTTCAAGT
1 ---GCTTAATTGCTTTTTTT-G-AAA-GTTTGAGGGCTTTTTTGATGCATTTTGAAAGTTCAAGT
*
32166560 ACCCAAATGAGTGGAAAAAAAGG-A
60 ACCCAAATGAGTGCAAAAAAAGGTA
*
32166584 -CTTAATTG-TTTTTTT-TAAGTTTGAGGGCTTTTT
1 GCTTAATTGCTTTTTTTGAAAGTTTGAGGGCTTTTT
32166617 GAACCATTAA
Statistics
Matches: 110, Mismatches: 6, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
80 15 0.14
81 2 0.02
84 7 0.06
85 8 0.07
89 21 0.19
90 56 0.51
91 1 0.01
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (84 bp):
GCTTAATTGCTTTTTTTGAAAGTTTGAGGGCTTTTTTGATGCATTTTGAAAGTTCAAGTACCCAA
ATGAGTGCAAAAAAAGGTA
Found at i:32167449 original size:109 final size:109
Alignment explanation
Indices: 32167090--32167600 Score: 773
Period size: 108 Copynumber: 4.7 Consensus size: 109
32167080 AATTTGGCTA
* * * *
32167090 AACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGAATTTCCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
32167155 TTATTTTTGAAAAGTTTTTTAAAAGGATATTTAG-CTATTTGGTCG
66 TTATTTTTGAAAAG-TTTTTAAAAGGATATTTAGTC-ATTTGGTCG
* *
32167200 AACGAGAAATCGAAACCCAGTACCTTAGGGTACGTTCCTCGAATTTCCAAACGCAAAATATTACC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
* * *
32167265 TTA-TTTTGAAAAGTTTTGAAAAGGATATTAAGTCATTTGGTGG
66 TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGTCATTTGGTCG
* *
32167308 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTTCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
* *
32167373 TTATTTTTAAAAAGTTTTTAAAAGGATATTT-GGCTATTTGGTCG
66 TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGTC-ATTTGGTCG
* * *
32167417 AACGAGAAATCGAAACCCAATACCTTAAGGCACATTCCTCGAATTTCCAAACGCAAAATATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
*
32167482 TTA-TTTTGAAAA-TTTTTGAAAAGGATATTGAGTCATTTGGTCG
66 TTATTTTTGAAAAGTTTTT-AAAAGGATATTTAGTCATTTGGTCG
* *
32167525 AACGAGAAATCGAAACCCAATACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAACATATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
32167590 TTA-TTTTGAAA
66 TTATTTTTGAAA
32167601 TATTTTCCTT
Statistics
Matches: 367, Mismatches: 29, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
107 5 0.01
108 192 0.52
109 108 0.29
110 62 0.17
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (109 bp):
AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCC
TTATTTTTGAAAAGTTTTTAAAAGGATATTTAGTCATTTGGTCG
Found at i:32167478 original size:217 final size:218
Alignment explanation
Indices: 32167090--32167596 Score: 854
Period size: 217 Copynumber: 2.3 Consensus size: 218
32167080 AATTTGGCTA
* * *
32167090 AACGTGAAATCGAAACCCAGCACCTTAGGGCACGTTTCTCGAATTTCCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
* *
32167155 TTATTTTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAG
66 TTATTTTTAAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAA
* * *
32167220 TACCTTAGGGTACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAAAGTTTTGAA
131 TACCTTAAGGCACATTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAAAGTTTTGAA
*
32167285 AAGGATATTAAGTCATTTGGTGG
196 AAGGATATTAAGTCATTTGGTCG
*
32167308 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTTCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
*
32167373 TTATTTTTAAAAAG-TTTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAA
66 TTATTTTTAAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAA
* *
32167437 TACCTTAAGGCACATTCCTCGAATTTCCAAACGCAAAATATTGCCTTATTTTGAAAATTTTTGAA
131 TACCTTAAGGCACATTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAAAGTTTTGAA
*
32167502 AAGGATATTGAGTCATTTGGTCG
196 AAGGATATTAAGTCATTTGGTCG
* * *
32167525 AACGAGAAATCGAAACCCAATACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAACATATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
32167590 TTATTTT
66 TTATTTT
32167597 GAAATATTTT
Statistics
Matches: 271, Mismatches: 18, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
217 197 0.73
218 74 0.27
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (218 bp):
AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
TTATTTTTAAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAA
TACCTTAAGGCACATTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAAAGTTTTGAA
AAGGATATTAAGTCATTTGGTCG
Found at i:32168109 original size:3 final size:3
Alignment explanation
Indices: 32168030--32168098 Score: 79
Period size: 3 Copynumber: 22.7 Consensus size: 3
32168020 TTAAAATTAC
* *
32168030 ATA ATA ATTA TTA ATGA A-A AT- ATA ATG ATA ATA ATA ATA ATA ATA
1 ATA ATA A-TA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32168075 ATA ATA ATA ATA ATA ATAA ATA AT
1 ATA ATA ATA ATA ATA AT-A ATA AT
32168099 GCACATAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
2 4 0.07
3 46 0.81
4 7 0.12
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:32170002 original size:129 final size:129
Alignment explanation
Indices: 32169840--32170121 Score: 492
Period size: 129 Copynumber: 2.2 Consensus size: 129
32169830 TGTTCCATTG
* *
32169840 TAATCTCAGGGAGATAAGACCTGATGCGTTCTACTCTACTATAACTTCAGAGAGATAAGATCCTT
1 TAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTT
**
32169905 TATTTTAATCCGCTCCACTGTAATCTCCGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTA
66 TATTTTAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTA
* *
32169969 TAATCTCAAGGAGATAAGACCTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTT
1 TAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTT
*
32170034 TATTTTAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTG
66 TATTTTAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTA
*
32170098 TAATCTCAGGGAGATAAGATCTGA
1 TAATCTCAGGGAGATAAGACCTGA
32170122 AATTCTTCGG
Statistics
Matches: 144, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
129 144 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (129 bp):
TAATCTCAGGGAGATAAGACCTGATACGATCTACTCTACTATAACTTCAGAGAGATAAGATCCTT
TATTTTAATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTA
Found at i:32170068 original size:44 final size:44
Alignment explanation
Indices: 32169891--32170118 Score: 123
Period size: 44 Copynumber: 5.2 Consensus size: 44
32169881 TAACTTCAGA
* **
32169891 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCCGG
1 GAGATAAGATCCTTTATTTCAATCCGCTCCACTGTAATCTCAAG
* * * * ** *
32169935 GAGATAGGAT--TACTAGCTTCAATCTGCTCTGCTATAATCTCAAG
1 GAGATAAGATCCT-TTA-TTTCAATCCGCTCCACTGTAATCTCAAG
* * * ** *
32169979 GAGATAAGA-CC-TGA-TACGATCTACTCTACTGTAA-CTTC-AG
1 GAGATAAGATCCTTTATTTCAATCCGCTCCACTGTAATC-TCAAG
*
32170019 AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAAG
1 -GAGATAAGATCCTTTATTTCAATCCGCTCCACTGTAATCTCAAG
* * * * ** *
32170064 GAGATAGGAT--TACTAGCTTCAATCTGCTCTGCTGTAATCTCAGG
1 GAGATAAGATCCT-TTA-TTTCAATCCGCTCCACTGTAATCTCAAG
32170108 GAGATAAGATC
1 GAGATAAGATC
32170119 TGAAATTCTT
Statistics
Matches: 136, Mismatches: 34, Indels: 27
0.69 0.17 0.14
Matches are distributed among these distances:
40 3 0.02
41 26 0.19
42 4 0.03
43 7 0.05
44 93 0.68
45 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (44 bp):
GAGATAAGATCCTTTATTTCAATCCGCTCCACTGTAATCTCAAG
Found at i:32182045 original size:108 final size:108
Alignment explanation
Indices: 32181784--32182316 Score: 795
Period size: 108 Copynumber: 4.9 Consensus size: 108
32181774 AAAATTCAAG
* * * * * * *
32181784 AGGATATTTAGCAATTTGG-CTAAACGTGAAATCGAAACCCAGCACCTTAGGGCATGTTTCTCGA
1 AGGATATTGAGCTATTTGGTC-GAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* *
32181848 ATTTCCAAACGCAAAACATTGCCTTATTTTTGAAAAGTTTTTTAAA
65 ATTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAAG-TTTTGAAA
*
32181894 AGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
1 AGGATATTGAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
*
32181959 TTTCCAAACGCAAAATATTTCCTTATTTTGAAAAGTTTTGAAA
66 TTTCCAAACGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAA
*
32182002 AGGATATTGAG-TCATTTGGTGGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
1 AGGATATTGAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* * *
32182066 ATTTCCAAACGCAAAACATTGCCTTATTTTTAAAAAGTTTTTAAA
65 ATTTCCAAACGCAAAATATTGCCTTA-TTTTGAAAAGTTTTGAAA
*
32182111 AGGATATTTG-GCTATTTGGTCGAACGAGAAATCGAAACCCAGTACTTTAGGGCACGTTCCTCGA
1 AGGATA-TTGAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
* *
32182175 ATTTCCAAACGCAAAATATTACCTTATTTTGAAAATTTTTGAAA
65 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAA
*
32182219 AGGATATTGAG-TCATTTGGTCGAACGAGAAATCGAAACCCAATACCTTAGGGCACGTTCCTCGA
1 AGGATATTGAGCT-ATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGA
*
32182283 ATTTCCAAACGCAACATATTGCCTTATTTTGAAA
65 ATTTCCAAACGCAAAATATTGCCTTATTTTGAAA
32182317 TATTTTCCTT
Statistics
Matches: 390, Mismatches: 26, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
107 5 0.01
108 194 0.50
109 106 0.27
110 84 0.22
111 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (108 bp):
AGGATATTGAGCTATTTGGTCGAACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAA
TTTCCAAACGCAAAATATTGCCTTATTTTGAAAAGTTTTGAAA
Found at i:32182184 original size:217 final size:218
Alignment explanation
Indices: 32181806--32182312 Score: 890
Period size: 217 Copynumber: 2.3 Consensus size: 218
32181796 AATTTGGCTA
* * * *
32181806 AACGTGAAATCGAAACCCAGCACCTTAGGGCATGTTTCTCGAATTTCCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
*
32181871 TTATTTTTGAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAG
66 TTATTTTTAAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAG
*
32181936 TACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTTCCTTATTTTGAAAAGTTTTGAA
131 TACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAAAGTTTTGAA
*
32182001 AAGGATATTGAGTCATTTGGTGG
196 AAGGATATTGAGTCATTTGGTCG
32182024 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
*
32182089 TTATTTTTAAAAAG-TTTTTAAAAGGATATTTGGCTATTTGGTCGAACGAGAAATCGAAACCCAG
66 TTATTTTTAAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAG
* *
32182153 TACTTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAAATTTTTGAA
131 TACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAAAGTTTTGAA
32182218 AAGGATATTGAGTCATTTGGTCG
196 AAGGATATTGAGTCATTTGGTCG
* * *
32182241 AACGAGAAATCGAAACCCAATACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAACATATTGCC
1 AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
32182306 TTATTTT
66 TTATTTT
32182313 GAAATATTTT
Statistics
Matches: 276, Mismatches: 13, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
217 202 0.73
218 74 0.27
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (218 bp):
AACGAGAAATCGAAACCCAGTACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAACATTGCC
TTATTTTTAAAAAGTTTTTTAAAAGGATATTTAGCTATTTGGTCGAACGAGAAATCGAAACCCAG
TACCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTACCTTATTTTGAAAAGTTTTGAA
AAGGATATTGAGTCATTTGGTCG
Found at i:32182666 original size:16 final size:16
Alignment explanation
Indices: 32182647--32182683 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
32182637 TAAATATGCG
32182647 TATATATAAAAAAAAT
1 TATATATAAAAAAAAT
* *
32182663 TATATATTAAATAAAT
1 TATATATAAAAAAAAT
32182679 TATAT
1 TATAT
32182684 GTAAGGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TATATATAAAAAAAAT
Found at i:32182786 original size:21 final size:21
Alignment explanation
Indices: 32182745--32182787 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
32182735 TTAAAATTAC
* *
32182745 ATAATAATTACTAATGAAAAT
1 ATAATAATTAATAATAAAAAT
32182766 ATAATAA-TAATAATAATAAAT
1 ATAATAATTAATAATAA-AAAT
32182787 A
1 A
32182788 ATGCACATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
ATAATAATTAATAATAAAAAT
Found at i:32184553 original size:16 final size:15
Alignment explanation
Indices: 32184524--32184557 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32184514 ATAGGGATAT
*
32184524 ATAAAATATTAAAAA
1 ATAAAATATAAAAAA
32184539 ATAAATATATAAAAAA
1 ATAAA-ATATAAAAAA
32184555 ATA
1 ATA
32184558 GAGACACGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAATATAAAAAA
Found at i:32191008 original size:232 final size:234
Alignment explanation
Indices: 32190575--32191240 Score: 809
Period size: 232 Copynumber: 2.8 Consensus size: 234
32190565 ATTTGGAAGG
* * *
32190575 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGTATAAGGGTACTTTAAAAGAAAAAAAAAT
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGAT-AGGG---TTT--AA-AAAGAAAAAC
* *
32190640 GAATAGTCGGAACAACATAGGAAAAATATTTACATCTTCTCATTTATTTGATTGTGAAAGTTAAT
59 GAATAGTCGGAACAACATAGGAAAAATATTTACATCTTCTCATTTATTTGATTGTGAAAGTAAAG
* * **
32190705 GAACAATGGGATATGATCTATGAAGGTGTTGAAGTTACTGAATGTCTTTCTGGATATTTGATGTT
124 GAACAATGGGATATGATCTATGAAGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTTAATGGC
* * *
32190770 TGGTAATAAGTTTTTTATTTATTTATGATCTACCGATAGGTGCCCT
189 TGGTAATAAGCTATTCATTTATTTATGATCTACCGATAGGTGCCCT
*
32190816 TTGTTAGAGGATCATATCTCCTTTGGAAATGTGTTGGATAGGG-TTAAAAAGAAAAACGAATAGT
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTTTAAAAAGAAAAACGAATAGT
** * * * *
32190880 CAAAACAACACAGG-AAAATAGTTACATCTTCCCATTTATTTGGTTGTGAAAGTAAAGGAACAAT
66 CGGAACAACATAGGAAAAATATTTACATCTTCTCATTTATTTGATTGTGAAAGTAAAGGAACAAT
* *
32190944 GGGATATGATCTATTAAGGTGTTGAAGTTATTGAATGAT-TTTCTGAATATTTAATGGCTGGTAA
131 GGGATATGATCTATGAAGGTGTTGAAGTTACTGAATG-TCTTTCTGAATATTTAATGGCTGGTAA
* * * *
32191008 TAAGCTATTCGTTTATTTATGATCTACCGGTGGGTGCTCT
195 TAAGCTATTCATTTATTTATGATCTACCGATAGGTGCCCT
*
32191048 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTTACTTAAAAAGAAAAACGAGT
1 TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGG-T--TTAAAAAGAAAAACGAAT
* *
32191113 AGTCGGAACAACATAGGAAAAAAAATTTACATCTTTCTCATTTGTTTGATTGTGAAAGTGAATGA
63 AGTCGGAACAACATAGG-AAAAATATTTACATC-TTCTCATTTATTTGATTGTGAAAGT--A--A
** * * * * *
32191178 AGTTGAACAATGAAATATAATTTTTTG-AGGTGTTGAAGTTACTGAACGTCTTTCTGCATATTT
122 AG--GAACAATGGGATATGA-TCTATGAAGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTT
32191241 GATGTCATTG
Statistics
Matches: 365, Mismatches: 44, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
232 176 0.48
233 27 0.07
234 2 0.01
236 33 0.09
238 12 0.03
239 22 0.06
240 4 0.01
241 38 0.10
243 3 0.01
244 1 0.00
245 44 0.12
246 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (234 bp):
TTGTTAGAGGATCATATCTCCTTTGAAAATGTGTTGGATAGGGTTTAAAAAGAAAAACGAATAGT
CGGAACAACATAGGAAAAATATTTACATCTTCTCATTTATTTGATTGTGAAAGTAAAGGAACAAT
GGGATATGATCTATGAAGGTGTTGAAGTTACTGAATGTCTTTCTGAATATTTAATGGCTGGTAAT
AAGCTATTCATTTATTTATGATCTACCGATAGGTGCCCT
Found at i:32192928 original size:96 final size:96
Alignment explanation
Indices: 32192677--32192928 Score: 303
Period size: 96 Copynumber: 2.6 Consensus size: 96
32192667 GTGGTTCCAG
* * * *
32192677 TAGTTCGGTGAACAATACCGGGAA-TCCTCCTGCATCCCTACCAAACAGCCAACTGAACTCCTTT
1 TAGTTCCGTGAACAATTCTGGGAACT-CTCCTGCATCCCTACCGAACAGCCAACTGAACTCCTTT
* *** *
32192741 GCCAGTTTTAACAGCCTGAGTGCGATCACTTC
65 GCCAGTTTTAACAGCCTCAACCCGATCACTAC
* * * **
32192773 TAATTCTGTGAACAATTCTGGGAACCCTCCTGCATCCCTACCGAACAGCCAACCAAACTCCTCTT
1 TAGTTCCGTGAACAATTCTGGGAACTCTCCTGCATCCCTACCGAACAGCCAACTGAACTCCT-TT
* *
32192838 -CCAGTTTTAACAGCC-CAACCCAGTTCAGTAC
65 GCCAGTTTTAACAGCCTCAACCC-GATCACTAC
*
32192869 TAGTTCCGTGAACAATTCTGGGAACTCTCCTGCATCCCTACCGAACAACCAACTGAACTC
1 TAGTTCCGTGAACAATTCTGGGAACTCTCCTGCATCCCTACCGAACAGCCAACTGAACTC
32192929 TACTGCTTTT
Statistics
Matches: 132, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
95 2 0.02
96 128 0.97
97 2 0.02
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.24
Consensus pattern (96 bp):
TAGTTCCGTGAACAATTCTGGGAACTCTCCTGCATCCCTACCGAACAGCCAACTGAACTCCTTTG
CCAGTTTTAACAGCCTCAACCCGATCACTAC
Found at i:32195019 original size:36 final size:36
Alignment explanation
Indices: 32194973--32195043 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
32194963 TTTTGGAGTA
32194973 AAAAAAAATACTCACTTGGTAGCAATATAATTAAAT
1 AAAAAAAATACTCACTTGGTAGCAATATAATTAAAT
32195009 AAAAAAAATACTCACTTGGTAGCAATATAATTAAA
1 AAAAAAAATACTCACTTGGTAGCAATATAATTAAA
32195044 ACATGGCGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.54, C:0.11, G:0.08, T:0.27
Consensus pattern (36 bp):
AAAAAAAATACTCACTTGGTAGCAATATAATTAAAT
Found at i:32196078 original size:31 final size:31
Alignment explanation
Indices: 32196040--32196111 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
32196030 ACATCCAAGG
** * *
32196040 TCACTAAACTATTAGTATGTTTATGTTTTGA
1 TCACTAAACTATTAGTAAATTTACGTTTCGA
*
32196071 TCACTAAATTATTAGTAAATTTACGTTTCGA
1 TCACTAAACTATTAGTAAATTTACGTTTCGA
*
32196102 TCACTCAACT
1 TCACTAAACT
32196112 TTAAAAAATT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (31 bp):
TCACTAAACTATTAGTAAATTTACGTTTCGA
Found at i:32196502 original size:31 final size:31
Alignment explanation
Indices: 32196464--32196524 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
32196454 AACAATTCAA
32196464 TGACTTAAATAAAAACTTTCGAATAATTTAG
1 TGACTTAAATAAAAACTTTCGAATAATTTAG
*
32196495 TGACTTAAATGAAAACTTTCGAATAATTTA
1 TGACTTAAATAAAAACTTTCGAATAATTTA
32196525 ATGATCATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (31 bp):
TGACTTAAATAAAAACTTTCGAATAATTTAG
Found at i:32199917 original size:29 final size:30
Alignment explanation
Indices: 32199870--32199926 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
32199860 ATAATGTCAT
32199870 ACATAAATTTTAATTTTG-TGTGATTTTAG
1 ACATAAATTTTAATTTTGTTGTGATTTTAG
*
32199899 ACATGAAATTTTAA-TTTGTTTTGATTTT
1 ACAT-AAATTTTAATTTTGTTGTGATTTT
32199927 CACAAATTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.30, C:0.04, G:0.12, T:0.54
Consensus pattern (30 bp):
ACATAAATTTTAATTTTGTTGTGATTTTAG
Found at i:32202894 original size:92 final size:92
Alignment explanation
Indices: 32202737--32202920 Score: 359
Period size: 92 Copynumber: 2.0 Consensus size: 92
32202727 TTAATATAGG
*
32202737 AGAATGCAAGTTCAAGTGCGCTAAAGCGCATTATCTTCCTACTTATGAATTGGAGAGACTATGCG
1 AGAATGCAAGTTCAAGTGCGCTAAAGCGCATTATCCTCCTACTTATGAATTGGAGAGACTATGCG
32202802 TAGTTCTAAGTATTGTGTAAAAAAGAA
66 TAGTTCTAAGTATTGTGTAAAAAAGAA
32202829 AGAATGCAAGTTCAAGTGCGCTAAAGCGCATTATCCTCCTACTTATGAATTGGAGAGACTATGCG
1 AGAATGCAAGTTCAAGTGCGCTAAAGCGCATTATCCTCCTACTTATGAATTGGAGAGACTATGCG
32202894 TAGTTCTAAGTATTGTGTAAAAAAGAA
66 TAGTTCTAAGTATTGTGTAAAAAAGAA
32202921 GAAGATATAA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 91 1.00
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (92 bp):
AGAATGCAAGTTCAAGTGCGCTAAAGCGCATTATCCTCCTACTTATGAATTGGAGAGACTATGCG
TAGTTCTAAGTATTGTGTAAAAAAGAA
Found at i:32203675 original size:24 final size:26
Alignment explanation
Indices: 32203648--32203708 Score: 62
Period size: 23 Copynumber: 2.6 Consensus size: 26
32203638 AGATGACTAT
32203648 ATATATAATTTTAATAAATAA-A-AA
1 ATATATAATTTTAATAAATAATATAA
*
32203672 ATAT-TAA-ATTAA-AAATAATATAA
1 ATATATAATTTTAATAAATAATATAA
*
32203695 AAATAT-ATTTTAAT
1 ATATATAATTTTAAT
32203709 TTTTTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
21 6 0.21
22 5 0.17
23 9 0.31
24 9 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
ATATATAATTTTAATAAATAATATAA
Found at i:32218766 original size:29 final size:29
Alignment explanation
Indices: 32218733--32218796 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
32218723 TAATCCACCA
32218733 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
32218762 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
32218792 CCCAA
1 CCCAA
32218797 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:32218770 original size:30 final size:30
Alignment explanation
Indices: 32218740--32218796 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32218730 CCACCCAACT
32218740 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
32218769 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
32218797 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:32225849 original size:29 final size:29
Alignment explanation
Indices: 32225816--32225879 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
32225806 TAATCCACCA
32225816 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
32225845 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
32225875 CCCAA
1 CCCAA
32225880 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:32225853 original size:30 final size:30
Alignment explanation
Indices: 32225823--32225879 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
32225813 CCACCCAACT
32225823 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
32225852 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
32225880 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:32230379 original size:23 final size:22
Alignment explanation
Indices: 32230312--32230379 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 22
32230302 ATATATCTAT
*
32230312 TTTTTAAATTAATAGAAAATAATA
1 TTTTAAAATTAATAG-AAATAA-A
**
32230336 TTTTAAAATT-AT---AATCTA
1 TTTTAAAATTAATAGAAATAAA
32230354 TTTTAAAATTAATAGAAGATAAA
1 TTTTAAAATTAATAGAA-ATAAA
32230377 TTT
1 TTT
32230380 AAAGTTATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 11
0.68 0.10 0.22
Matches are distributed among these distances:
18 11 0.32
19 5 0.15
22 1 0.03
23 8 0.24
24 9 0.26
ACGTcount: A:0.50, C:0.01, G:0.04, T:0.44
Consensus pattern (22 bp):
TTTTAAAATTAATAGAAATAAA
Found at i:32230389 original size:40 final size:43
Alignment explanation
Indices: 32230301--32230390 Score: 123
Period size: 42 Copynumber: 2.1 Consensus size: 43
32230291 ACAATCTATC
*
32230301 TATATATCTATTTTTTAAATTAATAGAAAATAATATTTTAAAAT
1 TATA-ATCTATTTTTAAAATTAATAGAAAATAATATTTTAAAAT
* *
32230345 TATAATCTA-TTTTAAAATTAATAGAAGATAA-A-TTTAAAGT
1 TATAATCTATTTTTAAAATTAATAGAAAATAATATTTTAAAAT
32230385 TATAAT
1 TATAAT
32230391 AACTAGATCT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 13 0.30
41 1 0.02
42 20 0.47
43 5 0.12
44 4 0.09
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.44
Consensus pattern (43 bp):
TATAATCTATTTTTAAAATTAATAGAAAATAATATTTTAAAAT
Found at i:32233951 original size:38 final size:38
Alignment explanation
Indices: 32233856--32233956 Score: 139
Period size: 38 Copynumber: 2.7 Consensus size: 38
32233846 AGTAGCTGAA
* *
32233856 CAATTCAACACTAGCAATACTCATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
* *
32233894 CAATTCAACATTCGCAGTAGTCATGCTTAACATGTATT
1 CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
* * *
32233932 TAATTCAACACTAGTAGTAGACATG
1 CAATTCAACACTAGCAGTAGTCATG
32233957 ATTTATCATG
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.32
Consensus pattern (38 bp):
CAATTCAACACTAGCAGTAGTCATGCTTAACATGTATT
Found at i:32234921 original size:20 final size:19
Alignment explanation
Indices: 32234895--32234938 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
32234885 AAATAAGTAT
32234895 TATATTAATTATATTATTATA
1 TATATT-ATTATATT-TTATA
*
32234916 -ATATTATTTTATTTTATA
1 TATATTATTATATTTTATA
32234934 TATAT
1 TATAT
32234939 AAAAAACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.24
19 11 0.52
20 5 0.24
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TATATTATTATATTTTATA
Found at i:32235909 original size:25 final size:25
Alignment explanation
Indices: 32235881--32235982 Score: 99
Period size: 25 Copynumber: 4.3 Consensus size: 25
32235871 ACTTTAGCGC
* **
32235881 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTACTAGCACGTCAGT
32235906 GCTCTCTGATTACTAGCACGTCAGT
1 GCTCTCTGATTACTAGCACGTCAGT
* * *
32235931 GCTCTCTGATTAGTA--A-TTCTGT
1 GCTCTCTGATTACTAGCACGTCAGT
*
32235953 GCTCTCTG--TA-TAGCACTTCAGT
1 GCTCTCTGATTACTAGCACGTCAGT
32235975 GCTCTCTG
1 GCTCTCTG
32235983 TTCATTAGTG
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
19 2 0.03
20 2 0.03
21 1 0.01
22 25 0.37
23 1 0.01
25 36 0.54
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.38
Consensus pattern (25 bp):
GCTCTCTGATTACTAGCACGTCAGT
Found at i:32235957 original size:22 final size:22
Alignment explanation
Indices: 32235926--32235983 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
32235916 TACTAGCACG
*
32235926 TCAGTGCTCTCTG-ATTAGTAAT
1 TCAGTGCTCTCTGTA-TAGCAAT
* *
32235948 TCTGTGCTCTCTGTATAGCACT
1 TCAGTGCTCTCTGTATAGCAAT
32235970 TCAGTGCTCTCTGT
1 TCAGTGCTCTCTGT
32235984 TCATTAGTGC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 30 0.97
23 1 0.03
ACGTcount: A:0.16, C:0.24, G:0.19, T:0.41
Consensus pattern (22 bp):
TCAGTGCTCTCTGTATAGCAAT
Found at i:32236109 original size:31 final size:31
Alignment explanation
Indices: 32236074--32236132 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
32236064 AAGAATATGA
* *
32236074 GATAGTGAATTGAAAATAGAATGTGAAAAAC
1 GATAGTGAATTGAAAACAGAATATGAAAAAC
32236105 GATAGTGAATTGAAAACAGAATATGAAA
1 GATAGTGAATTGAAAACAGAATATGAAA
32236133 TATGTTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.53, C:0.03, G:0.22, T:0.22
Consensus pattern (31 bp):
GATAGTGAATTGAAAACAGAATATGAAAAAC
Found at i:32237242 original size:23 final size:24
Alignment explanation
Indices: 32237204--32237256 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
32237194 TTATTGGATT
*
32237204 AAATTATTAAATTAAAATT-ATTTA
1 AAATTATTAAATT-AAATTAAATTA
32237228 AAATTATTAAA-TAAATTAAATTA
1 AAATTATTAAATTAAATTAAATTA
32237251 AAATTA
1 AAATTA
32237257 AAGAATTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 5 0.19
23 11 0.41
24 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
AAATTATTAAATTAAATTAAATTA
Found at i:32237313 original size:23 final size:23
Alignment explanation
Indices: 32237278--32237322 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
32237268 GGGTCAGTCG
* *
32237278 AAAAAATGTATGTTAATTAATCC
1 AAAAAAGGCATGTTAATTAATCC
32237301 AAAAAAGGCATGTTAATTAATC
1 AAAAAAGGCATGTTAATTAATC
32237323 AAAGGTCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (23 bp):
AAAAAAGGCATGTTAATTAATCC
Found at i:32238737 original size:43 final size:43
Alignment explanation
Indices: 32238690--32238771 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
32238680 AGGAAATTAC
*
32238690 GAAGAACATTTTTGTAAGTCAACTTTCACAAAATAAACAATAT
1 GAAGAACATTTTTGTAAGCCAACTTTCACAAAATAAACAATAT
* * *
32238733 GAAGAATATTTTTGTAAGCCATCTTTCATAAAATAAACA
1 GAAGAACATTTTTGTAAGCCAACTTTCACAAAATAAACA
32238772 CACCCTAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (43 bp):
GAAGAACATTTTTGTAAGCCAACTTTCACAAAATAAACAATAT
Found at i:32240879 original size:5 final size:6
Alignment explanation
Indices: 32240864--32240888 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
32240854 TATGATATAT
32240864 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
32240889 ATAGTTTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:32241719 original size:16 final size:18
Alignment explanation
Indices: 32241688--32241720 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
32241678 CTCTTATTTA
32241688 AAAATGATATAAAATATG
1 AAAATGATATAAAATATG
32241706 AAAA-GATA-AAAATAT
1 AAAATGATATAAAATAT
32241721 CATCATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (18 bp):
AAAATGATATAAAATATG
Found at i:32242013 original size:22 final size:23
Alignment explanation
Indices: 32241961--32242014 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
32241951 TTTTATTTAA
*
32241961 ATATTTT-ATAATTTATAAAATT
1 ATATTTTAATAATTGATAAAATT
* **
32241983 TTAAATTAATAA-TGATAAAATT
1 ATATTTTAATAATTGATAAAATT
32242005 ATATTTTAAT
1 ATATTTTAAT
32242015 CTCTCAAAAA
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
ATATTTTAATAATTGATAAAATT
Found at i:32242031 original size:30 final size:30
Alignment explanation
Indices: 32241997--32242068 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
32241987 ATTAATAATG
*
32241997 ATAAAATTATATTTTAATCTCTCAAAAATA
1 ATAAAATTATAATTTAATCTCTCAAAAATA
* * *
32242027 ATAAAAATT-TAATTTAATCTTTTAAAAATT
1 AT-AAAATTATAATTTAATCTCTCAAAAATA
*
32242057 ATAAAAATATAA
1 ATAAAATTATAA
32242069 ACTATTAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 5 0.14
30 24 0.69
31 6 0.17
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (30 bp):
ATAAAATTATAATTTAATCTCTCAAAAATA
Found at i:32244296 original size:14 final size:15
Alignment explanation
Indices: 32244255--32244299 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
32244245 AAAAAATATT
*
32244255 TTTTTACAATTTTATA
1 TTTTTATAATTTT-TA
32244271 TTTTTAATAATTTTTA
1 TTTTT-ATAATTTTTA
32244287 -TTTTATAATTTTT
1 TTTTTATAATTTTT
32244300 TAAAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 9 0.33
15 4 0.15
16 7 0.26
17 7 0.26
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTATAATTTTTA
Found at i:32244331 original size:25 final size:25
Alignment explanation
Indices: 32244271--32244334 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 25
32244261 CAATTTTATA
* *
32244271 TTTTTAATAATTTTTATTTTATAATT
1 TTTTTAA-AATTTATATATTATAATT
*
32244297 TTTTAAAAAATTATATATATTA-AATT
1 TTTT-TAAAATT-TATATATTATAATT
32244323 TTTTTAAAATTT
1 TTTTTAAAATTT
32244335 TAAAAAATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
24 1 0.03
25 6 0.19
26 16 0.50
27 9 0.28
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (25 bp):
TTTTTAAAATTTATATATTATAATT
Found at i:32245832 original size:9 final size:8
Alignment explanation
Indices: 32245788--32245873 Score: 79
Period size: 9 Copynumber: 10.2 Consensus size: 8
32245778 TATTTTTTAT
32245788 TTTTCTTC
1 TTTTCTTC
32245796 TTTT-TTCC
1 TTTTCTT-C
32245804 TTTT-TTC
1 TTTTCTTC
*
32245811 TTTT-TTT
1 TTTTCTTC
32245818 TCTTTCTTCC
1 T-TTTCTT-C
32245828 TTTTCTTC
1 TTTTCTTC
32245836 TTCTTCTTC
1 TT-TTCTTC
32245845 TTCTTCTTC
1 TT-TTCTTC
32245854 TTTTTCTTC
1 -TTTTCTTC
32245863 TTCTTCTTC
1 TT-TTCTTC
32245872 TT
1 TT
32245874 CCTCCTCATC
Statistics
Matches: 69, Mismatches: 2, Indels: 13
0.82 0.02 0.15
Matches are distributed among these distances:
7 10 0.14
8 19 0.28
9 37 0.54
10 3 0.04
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTCTTC
Found at i:32245836 original size:3 final size:3
Alignment explanation
Indices: 32245821--32245874 Score: 83
Period size: 3 Copynumber: 18.0 Consensus size: 3
32245811 TTTTTTTTCT
*
32245821 TTC TTCC TT- TTC TTC TTC TTC TTC TTC TTC TTC TTT TTC TTC TTC
1 TTC TT-C TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
32245866 TTC TTC TTC
1 TTC TTC TTC
32245875 CTCCTCATCA
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
2 2 0.04
3 42 0.89
4 3 0.06
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:32251096 original size:32 final size:32
Alignment explanation
Indices: 32251060--32251123 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
32251050 TTTTGTCGAA
32251060 GTTTTTCTCTCTTTTTT-TGGATT-TTGCTTGCT
1 GTTTTT-TCTCTTTTTTGT-GATTCTTGCTTGCT
32251092 GTTTTTTCTCTTTTTTGTGATTCTTGCTTGCT
1 GTTTTTTCTCTTTTTTGTGATTCTTGCTTGCT
32251124 TTGCTAGGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 14 0.47
32 16 0.53
ACGTcount: A:0.03, C:0.16, G:0.16, T:0.66
Consensus pattern (32 bp):
GTTTTTTCTCTTTTTTGTGATTCTTGCTTGCT
Found at i:32251556 original size:5 final size:5
Alignment explanation
Indices: 32251546--32251589 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
32251536 GAGAAGCATA
32251546 AAAAC AAAAC AAAAC AAAAC AACAA- AAAAC AAAAAC AAAA- AAAA
1 AAAAC AAAAC AAAAC AAAAC AA-AAC AAAAC -AAAAC AAAAC AAAA
32251590 AACAATAATG
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
4 6 0.17
5 23 0.64
6 7 0.19
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:32251566 original size:15 final size:15
Alignment explanation
Indices: 32251545--32251589 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
32251535 AGAGAAGCAT
32251545 AAAAACAAAACAAAAC
1 AAAAACAAAA-AAAAC
32251561 -AAAACAACAAAAAAC
1 AAAAACAA-AAAAAAC
32251576 AAAAACAAAAAAAA
1 AAAAACAAAAAAAA
32251590 AACAATAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 18 0.67
16 9 0.33
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAACAAAAAAAAC
Found at i:32257900 original size:23 final size:21
Alignment explanation
Indices: 32257846--32257900 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
32257836 AGGAGGAAGT
* *
32257846 ATTGGCAGTTTATCTACAAAC
1 ATTGGTAGTTTATCCACAAAC
*
32257867 ATTGGTGGTTTATCCACAAAC
1 ATTGGTAGTTTATCCACAAAC
32257888 ATACTGGTAGTTT
1 AT--TGGTAGTTT
32257901 TTATTTGCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 20 0.71
23 8 0.29
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.36
Consensus pattern (21 bp):
ATTGGTAGTTTATCCACAAAC
Found at i:32258017 original size:91 final size:90
Alignment explanation
Indices: 32257862--32258158 Score: 364
Period size: 91 Copynumber: 3.3 Consensus size: 90
32257852 AGTTTATCTA
* * *
32257862 CAAACATTGGTGGTTTATCCACAAACATACTGGTAGTTTTTATTTGCAAACACGTTGTGCATTCA
1 CAAACACTGGTGGTTTATCCACAAACATACTGGCA-ATTTTATTTGCAAACACGTTGTGCATTCA
* *
32257927 CAACCTACTAGTAGCGTATTAACTTG
65 CAACCTACTAGCAGCGTATTAACCTG
* * * * *
32257953 CAAACACTGGTGGTTTATCCAGAAACGTACTGACAACTTTTATCTGCAAATACGTTGTGCATTCA
1 CAAACACTGGTGGTTTATCCACAAACATACTGGCAA-TTTTATTTGCAAACACGTTGTGCATTCA
** *
32258018 CAACCTACTAGCAATGTATTAACCTA
65 CAACCTACTAGCAGCGTATTAACCTG
* * * ** * *
32258044 AAAACATTGGTGGTTTAACCACAAATTTACTGGCATATTTTATTTGCAAACCCGTTGTGTATTCA
1 CAAACACTGGTGGTTTATCCACAAACATACTGGCA-ATTTTATTTGCAAACACGTTGTGCATTCA
32258109 CAA-CTACTAGCAGCGTATTAACCTG
65 CAACCTACTAGCAGCGTATTAACCTG
*
32258134 CAAA-ACTGGTGGTTCATCCACAAAC
1 CAAACACTGGTGGTTTATCCACAAAC
32258159 TGGAGTGTTT
Statistics
Matches: 172, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
89 17 0.10
90 22 0.13
91 132 0.77
92 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (90 bp):
CAAACACTGGTGGTTTATCCACAAACATACTGGCAATTTTATTTGCAAACACGTTGTGCATTCAC
AACCTACTAGCAGCGTATTAACCTG
Found at i:32262456 original size:24 final size:24
Alignment explanation
Indices: 32262429--32262476 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
32262419 CAGTATTGGC
* * *
32262429 TTTGAGATGCTTATTTAAGAAAAG
1 TTTGAAATGCTCATTCAAGAAAAG
32262453 TTTGAAATGCTCATTCAAGAAAAG
1 TTTGAAATGCTCATTCAAGAAAAG
32262477 GTACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.40, C:0.08, G:0.19, T:0.33
Consensus pattern (24 bp):
TTTGAAATGCTCATTCAAGAAAAG
Found at i:32264127 original size:13 final size:13
Alignment explanation
Indices: 32264111--32264172 Score: 61
Period size: 13 Copynumber: 4.8 Consensus size: 13
32264101 TTTGGTAATA
*
32264111 CTTTTGAAAAGTA
1 CTTTTGAAAAGTG
*
32264124 CTTTCGAAAAGTG
1 CTTTTGAAAAGTG
** * *
32264137 CGGTGGAAAAATG
1 CTTTTGAAAAGTG
*
32264150 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
32264163 CTTTTGAAAA
1 CTTTTGAAAA
32264173 ATTTGAGTGT
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:32264593 original size:20 final size:21
Alignment explanation
Indices: 32264570--32264622 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
32264560 CTCATATTAG
*
32264570 ATATTAACATAACATA-GAAA
1 ATATTAACATAACAAATGAAA
* * *
32264590 ATATAAACCTAACAAATTAAA
1 ATATTAACATAACAAATGAAA
32264611 ATATTACACATA
1 ATATTA-ACATA
32264623 TTTGGATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 13 0.52
21 8 0.32
22 4 0.16
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.26
Consensus pattern (21 bp):
ATATTAACATAACAAATGAAA
Found at i:32268672 original size:72 final size:72
Alignment explanation
Indices: 32268548--32268786 Score: 394
Period size: 72 Copynumber: 3.3 Consensus size: 72
32268538 AAAATCATAT
* *
32268548 ATAAACAACTATTGATAAAACTA-ATTTA-ATATAAATAAGCAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
32268611 TACCAAAC
65 AACCAAAC
*
32268619 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
32268684 ACCAAAC
66 ACCAAAC
32268691 ATAAACAA-TCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACT-ATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
32268755 AACCAAAC
65 AACCAAAC
*
32268763 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
32268787 TTTAGCATTG
Statistics
Matches: 158, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
71 26 0.16
72 131 0.83
73 1 0.01
ACGTcount: A:0.56, C:0.15, G:0.05, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:32271574 original size:18 final size:17
Alignment explanation
Indices: 32271542--32271576 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
32271532 GTTATGATTT
*
32271542 TATTTTAAAAAAATATA
1 TATTTAAAAAAAATATA
32271559 TATTTAAAATAAAATATA
1 TATTTAAAA-AAAATATA
32271577 CCTTTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TATTTAAAAAAAATATA
Found at i:32271964 original size:14 final size:14
Alignment explanation
Indices: 32271942--32271977 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
32271932 TTTGATTTGA
32271942 TTATAAAAAATATT
1 TTATAAAAAATATT
*
32271956 TTATTAAAAATATT
1 TTATAAAAAATATT
32271970 TTCATAAA
1 TT-ATAAA
32271978 CCATAAAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (14 bp):
TTATAAAAAATATT
Found at i:32273302 original size:16 final size:16
Alignment explanation
Indices: 32273281--32273321 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
32273271 TGGTAAGGAA
32273281 AATTTTTAATTAAGTT
1 AATTTTTAATTAAGTT
***
32273297 AATTTTTAATTTTTTT
1 AATTTTTAATTAAGTT
32273313 AATTTTTAA
1 AATTTTTAA
32273322 AATATTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
AATTTTTAATTAAGTT
Found at i:32275665 original size:20 final size:19
Alignment explanation
Indices: 32275637--32275679 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
32275627 CAATATTTAA
32275637 AAAAGTTAT-CAAAAATATTT
1 AAAAGTTATAC-AAAAT-TTT
*
32275657 AAAATTTATACAAAATTTT
1 AAAAGTTATACAAAATTTT
32275676 AAAA
1 AAAA
32275680 AATAAACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 13 0.62
21 1 0.05
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (19 bp):
AAAAGTTATACAAAATTTT
Found at i:32276557 original size:14 final size:14
Alignment explanation
Indices: 32276538--32276568 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32276528 ATTAAGCCCC
*
32276538 AAACCTCAAACTCT
1 AAACCTCAAACCCT
32276552 AAACCTCAAACCCT
1 AAACCTCAAACCCT
32276566 AAA
1 AAA
32276569 ACTAAGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.16
Consensus pattern (14 bp):
AAACCTCAAACCCT
Found at i:32277622 original size:16 final size:17
Alignment explanation
Indices: 32277601--32277632 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32277591 CGTGGCAATT
32277601 TTAAAA-ATAGAAAAAG
1 TTAAAACATAGAAAAAG
32277617 TTAAAACATAGAAAAA
1 TTAAAACATAGAAAAA
32277633 AATTCATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.69, C:0.03, G:0.09, T:0.19
Consensus pattern (17 bp):
TTAAAACATAGAAAAAG
Found at i:32277864 original size:42 final size:42
Alignment explanation
Indices: 32277813--32278100 Score: 418
Period size: 42 Copynumber: 6.9 Consensus size: 42
32277803 GTTTACAAAC
* *
32277813 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
*
32277855 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAG-AA
*
32277898 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
32277940 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTGTA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* * * *
32277981 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
* *
32278023 AAAAACGCTGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-A
* *
32278065 GAAAACGCCGCTAAATAACATGTTCTTTAGCGGCGC
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC
32278101 CGCTAAAGAT
Statistics
Matches: 224, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
41 36 0.16
42 146 0.65
43 42 0.19
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAA
Found at i:32277913 original size:85 final size:85
Alignment explanation
Indices: 32277813--32278100 Score: 429
Period size: 85 Copynumber: 3.4 Consensus size: 85
32277803 GTTTACAAAC
* *
32277813 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
32277878 TCTTTAGCGGCGCTTAGAAA
66 TCTTTAGCGGCGCTTAGAAA
*
32277898 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
* *
32277963 TCTTTAGCGGCG-TTTG-TA
66 TCTTTAGCGGCGCTTAGAAA
* * * *
32277981 AAAAATGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGGAAAAAACGCTGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
**
32278046 TCTTTAGCGGCGCTTA-AGG
66 TCTTTAGCGGCGCTTAGAAA
* * *
32278065 GAAAACGCCGCTAAATAACATGTTCTTTAGCGGCGC
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGC
32278101 CGCTAAAGAT
Statistics
Matches: 183, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
83 73 0.40
84 36 0.20
85 74 0.40
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (85 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCGCTTAGAAA
Found at i:32278114 original size:28 final size:28
Alignment explanation
Indices: 32278070--32278127 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
32278060 TAAGGGAAAA
*
32278070 CGCCGCTAAATAACATGTTCTTTAGCGG
1 CGCCGCTAAAGAACATGTTCTTTAGCGG
*
32278098 CGCCGCTAAAGATCATGTTCTTTAGCGG
1 CGCCGCTAAAGAACATGTTCTTTAGCGG
32278126 CG
1 CG
32278128 TTTTTTTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (28 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGG
Found at i:32278159 original size:43 final size:42
Alignment explanation
Indices: 32278098--32278223 Score: 164
Period size: 41 Copynumber: 3.0 Consensus size: 42
32278088 TCTTTAGCGG
* * * * *
32278098 CGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTCTAAT
1 CGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTAC-AAA
32278141 CGCCGCTAAAGAACATGTTCTTTAGTGGC-ATTTTTTACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTACAAA
* * *
32278182 CGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTACAAA
32278224 AACGCCACTA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
41 30 0.41
42 17 0.23
43 27 0.36
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTACAAA
Found at i:32278608 original size:21 final size:21
Alignment explanation
Indices: 32278540--32278610 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
32278530 TTTTGCTCTG
* *
32278540 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
32278561 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
32278582 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
32278603 CTCTGCTT
1 CTCTGCTT
32278611 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:32284108 original size:11 final size:9
Alignment explanation
Indices: 32284060--32284350 Score: 87
Period size: 7 Copynumber: 34.0 Consensus size: 9
32284050 AATTGCAATG
32284060 GTAAGTTAT
1 GTAAGTTAT
32284069 GTAAGTTAT
1 GTAAGTTAT
32284078 GTAAGTTAAAT
1 GTAAGTT--AT
32284089 GT-A-TTAT
1 GTAAGTTAT
32284096 GTAAGTTAAAT
1 GTAAGTT--AT
32284107 GTAAG-T-T
1 GTAAGTTAT
32284114 GTAAGTTAT
1 GTAAGTTAT
*
32284123 -TATGTATTAT
1 GTAAG--TTAT
32284133 GTAAG-T-T
1 GTAAGTTAT
32284140 GTAAGTTAAAT
1 GTAAGTT--AT
*
32284151 GT-A-TTGT
1 GTAAGTTAT
32284158 GTAAG-T-T
1 GTAAGTTAT
32284165 GTAAGTTAAAT
1 GTAAGTT--AT
32284176 GT-A-TTAT
1 GTAAGTTAT
32284183 GTAAG-T-T
1 GTAAGTTAT
32284190 GTAAGTTAT
1 GTAAGTTAT
*
32284199 -TATGTATTAT
1 GTAAG--TTAT
32284209 GTAAG-T-T
1 GTAAGTTAT
32284216 GTAAGTTAT
1 GTAAGTTAT
* *
32284225 -TATGTATTGT
1 GTAAG--TTAT
32284235 GTAAG-T-T
1 GTAAGTTAT
32284242 GTAAGTTAAAT
1 GTAAGTT--AT
32284253 GT-A-TTAT
1 GTAAGTTAT
32284260 GTAAG-T-T
1 GTAAGTTAT
32284267 GTAAGTTAAT
1 GTAAGTT-AT
32284277 GT-A-TTAT
1 GTAAGTTAT
32284284 GTAAG-T-T
1 GTAAGTTAT
32284291 GTAAGTTAAAT
1 GTAAGTT--AT
32284302 GT-A-TTAT
1 GTAAGTTAT
32284309 GTAAG-T-T
1 GTAAGTTAT
32284316 GTAAGTTAT
1 GTAAGTTAT
*
32284325 -TATGTATTAT
1 GTAAG--TTAT
32284335 GTAAG-T-T
1 GTAAGTTAT
32284342 GTAAGTTAT
1 GTAAGTTAT
32284351 TATGTATTGT
Statistics
Matches: 215, Mismatches: 10, Indels: 114
0.63 0.03 0.34
Matches are distributed among these distances:
7 83 0.39
8 39 0.18
9 34 0.16
10 24 0.11
11 35 0.16
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:32284139 original size:26 final size:25
Alignment explanation
Indices: 32284105--32284498 Score: 561
Period size: 26 Copynumber: 15.8 Consensus size: 25
32284095 TGTAAGTTAA
32284105 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
*
32284131 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
* *
32284156 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
32284181 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
32284207 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
* *
32284233 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
32284258 ATGTAAGTTGTAAGTTA-ATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
32284282 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
32284307 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
32284333 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
*
32284359 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
32284385 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-TATGTATT
* *
32284411 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
32284436 ATGTCAG-T-T-A---A-ATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
32284454 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATATGTATT
*
32284479 ATGTAAGTTGTAAGTAATAT
1 ATGTAAGTTGTAAGTTATAT
32284499 AATTATTAAT
Statistics
Matches: 341, Mismatches: 17, Indels: 21
0.90 0.04 0.06
Matches are distributed among these distances:
18 13 0.04
19 2 0.01
20 1 0.00
21 1 0.00
22 1 0.00
23 1 0.00
24 26 0.08
25 131 0.38
26 165 0.48
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (25 bp):
ATGTAAGTTGTAAGTTATATGTATT
Found at i:32284487 original size:18 final size:18
Alignment explanation
Indices: 32284419--32284462 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
32284409 TTGTGTAAGT
32284419 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
*
32284437 TGTCAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
32284455 TGTAAGTT
1 TGTAAGTT
32284463 GTAAGTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.34, C:0.02, G:0.18, T:0.45
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:32284796 original size:73 final size:73
Alignment explanation
Indices: 32284496--32284786 Score: 566
Period size: 73 Copynumber: 4.0 Consensus size: 73
32284486 TTGTAAGTAA
32284496 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
32284561 TA-TTTTT
66 TATTTTTT
32284568 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
32284633 TATTTTTT
66 TATTTTTT
32284641 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
32284706 TATTTTTT
66 TATTTTTT
*
32284714 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAGTATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
32284779 TATTTTTT
66 TATTTTTT
32284787 ATATTTTATT
Statistics
Matches: 217, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
72 67 0.31
73 150 0.69
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.51
Consensus pattern (73 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTT
Found at i:32284954 original size:13 final size:13
Alignment explanation
Indices: 32284936--32285006 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
32284926 ATTTATAATT
32284936 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
32284949 ATTTAAGTAACAT
1 ATTTAAGTAATAA
32284962 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
32284975 ATTTAAGTAACAT
1 ATTTAAGTAATAA
32284988 ATTTAAGTAATAA
1 ATTTAAGTAATAA
32285001 ATTTAA
1 ATTTAA
32285007 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:32284965 original size:26 final size:26
Alignment explanation
Indices: 32284935--32285006 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
32284925 TATTTATAAT
32284935 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
32284961 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
32284987 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
32285007 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:32285033 original size:17 final size:17
Alignment explanation
Indices: 32285011--32285166 Score: 131
Period size: 17 Copynumber: 8.6 Consensus size: 17
32285001 ATTTAAACAA
32285011 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
32285028 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
32285045 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
32285062 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
32285085 ATTTTAGTAAGTAA--T
1 ATTTTAGTAAGTAATGT
*
32285100 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
32285117 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
32285140 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
32285157 ATTTTAGTAA
1 ATTTTAGTAA
32285167 TAAATTTAAC
Statistics
Matches: 118, Mismatches: 3, Indels: 36
0.75 0.02 0.23
Matches are distributed among these distances:
14 1 0.01
15 13 0.11
16 1 0.01
17 72 0.61
23 29 0.25
24 2 0.02
ACGTcount: A:0.41, C:0.01, G:0.12, T:0.46
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:32285057 original size:57 final size:57
Alignment explanation
Indices: 32284978--32285175 Score: 346
Period size: 57 Copynumber: 3.5 Consensus size: 57
32284968 GTAATAAATT
** *
32284978 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
32285035 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
32285092 TAAGTAA--TATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
32285147 TAAGTAATGTATTTTAGTAATAAATTTAA
1 TAAGTAATGTATTTTAGTAATAAATTTAA
32285176 CATTCAATCG
Statistics
Matches: 135, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
55 54 0.40
57 81 0.60
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (57 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
Found at i:32286525 original size:11 final size:11
Alignment explanation
Indices: 32286509--32286548 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
32286499 GATGATAATA
32286509 CATTAGTTACC
1 CATTAGTTACC
32286520 CATTAGTTACC
1 CATTAGTTACC
*
32286531 CACTAGTTACC
1 CATTAGTTACC
32286542 CA-TAGTT
1 CATTAGTT
32286549 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:32287638 original size:84 final size:83
Alignment explanation
Indices: 32287531--32287731 Score: 330
Period size: 84 Copynumber: 2.4 Consensus size: 83
32287521 ATTAACACCG
32287531 TTTTGTGGCGTTTTTGGTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
1 TTTTGTGGCGTTTTT-G-AAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTT
32287596 TCGTGGTCTGGAATTGCATT
64 TCGTGGTCTGGAATTGCATT
*
32287616 TTTTGTGGCGTTTTTAGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT
1 TTTTGTGGCGTTTTT-GAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTT
32287681 CGTGGTCTGGAATTGCATT
65 CGTGGTCTGGAATTGCATT
* * *
32287700 ATTTGTGGCATTTTCTTAAAAACGCCACTAAA
1 TTTTGTGGCGTTTT-TGAAAAACGCCACTAAA
32287732 AGTTTAACTA
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
84 93 0.85
85 17 0.15
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (83 bp):
TTTTGTGGCGTTTTTGAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACAACACCGTTTTC
GTGGTCTGGAATTGCATT
Found at i:32288134 original size:12 final size:12
Alignment explanation
Indices: 32288117--32288142 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32288107 TTAAAATAGC
32288117 ACGACCTCTTTT
1 ACGACCTCTTTT
32288129 ACGACCTCTTTT
1 ACGACCTCTTTT
32288141 AC
1 AC
32288143 AGTTATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.35, G:0.08, T:0.38
Consensus pattern (12 bp):
ACGACCTCTTTT
Found at i:32288998 original size:111 final size:111
Alignment explanation
Indices: 32288750--32289333 Score: 983
Period size: 111 Copynumber: 5.3 Consensus size: 111
32288740 AACACCTAGA
* *
32288750 TTAGCGGCGCTTTACAAAAAACGCCACTAA-TGCCCCCCAAAGGACACAAAACGGCACCGTCTGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGT-CCCCCCAAAGGCCACAAAACGGCACCGTCTGG
* * * * * ** *
32288814 GAGTATTATTTGCGGCATT-TTTTTAAGCGCTGCTAATGTTCACTCT
65 GTGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
32288860 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
32288925 TGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 TGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
**
32288971 TTAGCGGCGCTTCGCAATAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
* *
32289036 TGTATTATTTGCGGCGTTATTTATAAACGCCGCTAATGCTCACTCT
66 TGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
*
32289082 TTAGCGGCGCTTTACAATAAATGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
32289147 TGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 TGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
32289193 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
1 TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
32289258 TGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
66 TGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
* **
32289304 TTAGCGGCGCTTTTCCTTAAACGCCACTAA
1 TTAGCGGCGCTTTACAATAAACGCCACTAA
32289334 TGCTCACTCT
Statistics
Matches: 449, Mismatches: 23, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
110 77 0.17
111 372 0.83
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (111 bp):
TTAGCGGCGCTTTACAATAAACGCCACTAAGTCCCCCCAAAGGCCACAAAACGGCACCGTCTGGG
TGTATTATTTGCGGCGTTATCTATAAACGCCACTAATGCTCACTCT
Found at i:32289326 original size:40 final size:40
Alignment explanation
Indices: 32289281--32289397 Score: 198
Period size: 40 Copynumber: 2.9 Consensus size: 40
32289271 GCGTTATCTA
**
32289281 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTCCT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
32289321 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
* *
32289361 TAAACGCCGCTATTGCTCACTCTTTAGCGGCGCTTTT
1 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTT
32289398 GCTCCAAACG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (40 bp):
TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTAAT
Found at i:32290985 original size:21 final size:21
Alignment explanation
Indices: 32290938--32290987 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
32290928 CATACGGGTG
* **
32290938 GCCACACGGGCGTGTGCCTTG
1 GCCACACGGGCGTGTCCCTCA
* *
32290959 GACACACGGTCGTGTCCCTCA
1 GCCACACGGGCGTGTCCCTCA
32290980 GCCACACG
1 GCCACACG
32290988 AGCATATGAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.38, G:0.30, T:0.16
Consensus pattern (21 bp):
GCCACACGGGCGTGTCCCTCA
Found at i:32338022 original size:44 final size:44
Alignment explanation
Indices: 32337952--32338759 Score: 776
Period size: 44 Copynumber: 18.4 Consensus size: 44
32337942 GGATAGATTG
* * *
32337952 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * * *
32337996 AGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * * *
32338040 GGATCGAAGA-GGCAGATCTTGTCTTCCCATATTGGTGGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * *
32338084 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * * *
32338128 AGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * * *
32338172 GGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * ** *
32338216 AGATCGAAGAAAGCAGATCTTGTCTTCATGCATTAGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * *
32338260 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * * * *
32338304 AGATCGAAGATATCAGATCCTATTTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * ** * *
32338348 GGATCGAAGAT-GCAGATCTTGTCTTCATGCATTAGCATGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* *
32338391 AGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * * *
32338435 AGATCGAAGAAAGCAGATATTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * *
32338479 AGATCGAAGATATCAGATCCTATCTTCCTATATTGGC--GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * ** * *
32338521 AGATCGAAGAAAGCAGATCTTGTCTTCATGCATTAGCTTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* *
32338565 AGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * *
32338609 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
* * * *
32338653 AGATCGAAGATACCAGATCCTATCTTCCTATATTGGTAG-GAAGT
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
* * * * * * * * *
32338697 GGACCGACGAT-GCAGATTTTGTTTTCCCATACTGGTGGTGAAGA
1 AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGG-CGTGAAGT
*
32338741 AGATCGAAGAAAGCAGATC
1 AGATCGAAGATAGCAGATC
32338760 GACGATGGCG
Statistics
Matches: 618, Mismatches: 129, Indels: 33
0.79 0.17 0.04
Matches are distributed among these distances:
42 34 0.06
43 132 0.21
44 361 0.58
45 91 0.15
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (44 bp):
AGATCGAAGATAGCAGATCTTGTCTTCCTATATTGGCGTGAAGT
Found at i:32338189 original size:132 final size:132
Alignment explanation
Indices: 32337952--32338759 Score: 1002
Period size: 132 Copynumber: 6.1 Consensus size: 132
32337942 GGATAGATTG
*
32337952 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* *
32338017 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGAGGCAGATCTTGTCTTCCCATATTGGTGGTGAA
66 ATCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAA
32338082 GT
131 GT
*
32338084 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* *
32338149 ATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
66 ATCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAA
32338214 GT
131 GT
* * * *
32338216 AGATCGAAGAAAGCAGATCTTGTCTTCATGCATTAGCGTGAAGTAGATCGAAGAAAGCAGATCTT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* * * * * * * * * *
32338281 GTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATATCAGATCCTATTTTCCTATATTGGTAG-G
66 ATCTTCCTATATTGGTAG-GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGTG
32338344 AAGT
129 AAGT
* * * * * *
32338348 GGATCGAAG-ATGCAGATCTTGTCTTCATGCATTAGCATGAAGTAGATCGAAGAT-GCAGATCTT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* * * * * *** *
32338411 GTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATATTGTCTTCATGTATTGG-CGTG
66 ATCTTCCTATATTGGTAG-GAAGTAGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGTG
32338475 AAGT
129 AAGT
* * * * * * * *
32338479 AGATCGAAGATATCAGATCCTATCTTCCTATATTGGC--GAAGTAGATCGAAGAAAGCAGATCTT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* * ** * *
32338542 GTCTTCATGCATTAGCT-TGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGA
66 ATCTTCCTATATT-GGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGA
32338606 AGT
130 AGT
*
32338609 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATACCAGATCCT
1 AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
* * * * * *
32338674 ATCTTCCTATATTGGTAGGAAGTGGACCGACGATGCAGATTTTGTTTTCCCATACTGGTGGTGAA
66 ATCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAA
*
32338739 GA
131 GT
32338741 AGATCGAAGAAAGCAGATC
1 AGATCGAAGAAAGCAGATC
32338760 GACGATGGCG
Statistics
Matches: 584, Mismatches: 80, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
129 21 0.04
130 89 0.15
131 109 0.19
132 344 0.59
133 21 0.04
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (132 bp):
AGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCT
ATCTTCCTATATTGGTAGGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGTGAA
GT
Found at i:32339283 original size:21 final size:22
Alignment explanation
Indices: 32339242--32339298 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 22
32339232 AAACCCAACT
*
32339242 AACCTAGCCCAATACCCTAAACC
1 AACCTAGCCCAATA-CCTAAAAC
32339265 AACCTAGCCCAAT-CCTAAAAC
1 AACCTAGCCCAATACCTAAAAC
*
32339286 TACCTGAGCCCAA
1 AACCT-AGCCCAA
32339299 ATTTTAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 11 0.35
22 7 0.23
23 13 0.42
ACGTcount: A:0.39, C:0.40, G:0.07, T:0.14
Consensus pattern (22 bp):
AACCTAGCCCAATACCTAAAAC
Found at i:32347581 original size:22 final size:22
Alignment explanation
Indices: 32347553--32347609 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
32347543 AAAGAAGGCC
* *
32347553 CAGGGAATGTTAGCACTAGGGA
1 CAGGGAATGTCAGCACCAGGGA
32347575 CAGGGAATGTCAGCACCAGGGA
1 CAGGGAATGTCAGCACCAGGGA
*
32347597 CAAGGAATGTCAG
1 CAGGGAATGTCAG
32347610 TGCCCTCGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.33, C:0.18, G:0.35, T:0.14
Consensus pattern (22 bp):
CAGGGAATGTCAGCACCAGGGA
Found at i:32349998 original size:24 final size:24
Alignment explanation
Indices: 32349935--32349986 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32349925 TTTCTAAAAG
* * *
32349935 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
32349959 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
32349983 ATTT
1 ATTT
32349987 TACTTTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:32358877 original size:51 final size:51
Alignment explanation
Indices: 32358801--32358903 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 51
32358791 GTTCATTAGA
*
32358801 ATTGAATAGGGTTGTAATAGTAAAGAGCTATAATGGAAT-GTAGTTGTAATT
1 ATTGAATAGGGTTGTAATAGTAAAGAGCTATAATGGAATAG-AGCTGTAATT
*
32358852 ATTGAATAGGGTTGTAATAGTAAAGAGCTATAGTGGAATAGAGCTGTAATT
1 ATTGAATAGGGTTGTAATAGTAAAGAGCTATAATGGAATAGAGCTGTAATT
32358903 A
1 A
32358904 GTAATTTAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
51 48 0.98
52 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.26, T:0.33
Consensus pattern (51 bp):
ATTGAATAGGGTTGTAATAGTAAAGAGCTATAATGGAATAGAGCTGTAATT
Found at i:32360661 original size:20 final size:19
Alignment explanation
Indices: 32360602--32360662 Score: 54
Period size: 19 Copynumber: 3.1 Consensus size: 19
32360592 ACTTTCCTTC
32360602 TAAATATGTTGATGGAAAAT
1 TAAATATGTTGATGG-AAAT
* *
32360622 T-TATATTTTGTTAT-GAAAT
1 TAAATATGTTG--ATGGAAAT
32360641 TAAATATGTTGATGGACAAT
1 TAAATATGTTGATGGA-AAT
32360661 TA
1 TA
32360663 CTTGTATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 10
0.70 0.09 0.22
Matches are distributed among these distances:
18 2 0.06
19 14 0.44
20 14 0.44
21 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.16, T:0.43
Consensus pattern (19 bp):
TAAATATGTTGATGGAAAT
Found at i:32365579 original size:11 final size:11
Alignment explanation
Indices: 32365528--32365613 Score: 61
Period size: 11 Copynumber: 7.6 Consensus size: 11
32365518 AATAAACACC
*
32365528 AAAAAAATTTT
1 AAAAATATTTT
* * *
32365539 AAAAAAAATTA
1 AAAAATATTTT
32365550 AGAAAAGTATTTT
1 A-AAAA-TATTTT
32365563 AAAAATATTTT
1 AAAAATATTTT
*
32365574 AAAAATA---A
1 AAAAATATTTT
32365582 AAAAATGTATTTT
1 AAAAA--TATTTT
32365595 AAAAATATTTTT
1 AAAAATA-TTTT
32365607 AAAAATA
1 AAAAATA
32365614 AAAAATATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
8 5 0.08
10 2 0.03
11 25 0.42
12 19 0.32
13 9 0.15
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:32365592 original size:32 final size:32
Alignment explanation
Indices: 32365542--32365618 Score: 120
Period size: 32 Copynumber: 2.4 Consensus size: 32
32365532 AAATTTTAAA
*
32365542 AAAAATTAAGAAAAGTATTTTAAAAATA-TTTT
1 AAAAA-TAAAAAAAGTATTTTAAAAATATTTTT
32365574 AAAAATAAAAAAATGTATTTTAAAAATATTTTT
1 AAAAATAAAAAAA-GTATTTTAAAAATATTTTT
32365607 AAAAATAAAAAA
1 AAAAATAAAAAA
32365619 TATATTTATT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
31 7 0.17
32 19 0.45
33 16 0.38
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (32 bp):
AAAAATAAAAAAAGTATTTTAAAAATATTTTT
Found at i:32374150 original size:21 final size:20
Alignment explanation
Indices: 32374109--32374213 Score: 61
Period size: 21 Copynumber: 5.0 Consensus size: 20
32374099 AAAAAGCCCG
*
32374109 AAGGCTAAACA-AAAGCACAT
1 AAGGCTAAACAGAAA-CTCAT
32374129 AAGTGCTAAACAGAAACTCAT
1 AAG-GCTAAACAGAAACTCAT
* * * *
32374150 AAGGATTGAACGGAAGCTCAT
1 AAGG-CTAAACAGAAACTCAT
* *
32374171 AAGAGCTGAACGGAAAC-CTAT
1 AAG-GCTAAACAGAAACTC-AT
* *
32374192 AAGGGTTAAATAGAAACTCAT
1 AA-GGCTAAACAGAAACTCAT
32374213 A
1 A
32374214 TGAGTTGAAC
Statistics
Matches: 67, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
20 5 0.07
21 56 0.84
22 6 0.09
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.17
Consensus pattern (20 bp):
AAGGCTAAACAGAAACTCAT
Found at i:32381242 original size:13 final size:13
Alignment explanation
Indices: 32381224--32381250 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
32381214 AATCGTGGGT
32381224 AAAAAGAAAAAGG
1 AAAAAGAAAAAGG
32381237 AAAAAGAAAAAGG
1 AAAAAGAAAAAGG
32381250 A
1 A
32381251 GGTTCTTACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAGG
Found at i:32381864 original size:3 final size:3
Alignment explanation
Indices: 32381804--32381848 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
32381794 TTCTAATTGT
* * *
32381804 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTG TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32381849 CCGCTTCGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:32388124 original size:88 final size:88
Alignment explanation
Indices: 32387970--32388908 Score: 1274
Period size: 88 Copynumber: 10.6 Consensus size: 88
32387960 AACAGATCAG
* * *
32387970 TGAAGATAGCAGATCTTGCCTTCCTGCA-CTGACAGCGAAGCAGATTGAAGACACCAGCCTTGCC
1 TGAAGATAGCAGATCTTGCCTTCCTGCATC-GACAGTGAAGCAGATCGAAGACACAAGCCTTGCC
* *
32388034 TCCCTCGGTTGCAGCGGAGCAGGT
65 TCCCTCGGTTGTAGTGGAGCAGGT
* * *
32388058 TGAAAATAGCAGATCTTGCCTTCCTGCATCGACGGTGAAGCAGATCGAAGACACAAGCCTTACCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
*
32388123 CCCTCTGTTGTAGTGGAGCAGGT
66 CCCTCGGTTGTAGTGGAGCAGGT
* ** * *
32388146 TGAAGATAGCAGATCTTGCCTTCCTGCACCGACACCGAAGCAGATCGAAGACACCAGCTTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
* ** * *
32388211 CCCTGGGTTACAGCGGAGCAAGT
66 CCCTCGGTTGTAGTGGAGCAGGT
* *
32388234 TAAAGATAGCAGATCTTGCCTTCCTGTA-CTGACAGTGAAGCAGATCGAAGACACAAGCCTTGCC
1 TGAAGATAGCAGATCTTGCCTTCCTGCATC-GACAGTGAAGCAGATCGAAGACACAAGCCTTGCC
**
32388298 TCATTCGGTTGTAGTGGAGCAGGT
65 TCCCTCGGTTGTAGTGGAGCAGGT
* * *
32388322 TGAAGGTAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGTAGATTGAAGACACAAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
32388387 CCCTCGGTTGTAGTGGAGCAGGT
66 CCCTCGGTTGTAGTGGAGCAGGT
* * * **
32388410 TGAAGATAGCAGATATCGCCTTCCTGCATCGACGGCAAAGCAGATCGAAGACACAAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
32388475 CCCTCGGTTGTAGTGGAGCAGGT
66 CCCTCGGTTGTAGTGGAGCAGGT
* * ** *
32388498 TAAAGATAACAGGTCTTGCCGATCTTGCCTTCCTGCATTAAC-GACGAAGCAGATCGAAGACACA
1 TGAAGAT---A------GCAGATCTTGCCTTCCTGCATCGACAG-TGAAGCAGATCGAAGACACA
*
32388562 AGCCTTACCTCCCTCGGTTGTAGTGGA-CTAGGT
56 AGCCTTGCCTCCCTCGGTTGTAGTGGAGC-AGGT
* * *
32388595 TGAAGATAACAGGTTTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
32388660 CCCTCGGTTGTAGTGGAGCAGGT
66 CCCTCGGTTGTAGTGGAGCAGGT
* *
32388683 TGAAGGTAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATTGAAGACACAAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
*
32388748 CCCTCGATTGTAGTGGAGCAGGT
66 CCCTCGGTTGTAGTGGAGCAGGT
* * * * *
32388771 TGAAGATAGTAGATCTTGCCTTCCTGCATTGACGGCGAAGTAGATCGAAGACACAAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
*
32388836 CCCTCGGTTGTAGTGGAACAGGT
66 CCCTCGGTTGTAGTGGAGCAGGT
* *
32388859 TGAAGATAGCAGGTCTTGCCTTCCTGCATCGACAGTGAAACAGATCGAAG
1 TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAG
32388909 CCAATGGTCC
Statistics
Matches: 745, Mismatches: 90, Indels: 32
0.86 0.10 0.04
Matches are distributed among these distances:
87 1 0.00
88 661 0.89
89 4 0.01
91 1 0.00
94 1 0.00
96 2 0.00
97 75 0.10
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (88 bp):
TGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCT
CCCTCGGTTGTAGTGGAGCAGGT
Found at i:32388196 original size:45 final size:44
Alignment explanation
Indices: 32387971--32388284 Score: 151
Period size: 44 Copynumber: 7.1 Consensus size: 44
32387961 ACAGATCAGT
*
32387971 GAAGATAGCAGATCTTGCCTTCCTGCACTGACAGCGAAGCAGATT
1 GAAGATAGCAGATCTTGCCTTCCTG-ACTGACAGCGAAGCAGATC
* * * * ** * * *
32388016 GAAGACACCAG-CCTTGCCTCCCTCGGTTG-CAGCGGAGCAGGTT
1 GAAGATAGCAGATCTTGCCTTCCT-GACTGACAGCGAAGCAGATC
* * *
32388059 GAAAATAGCAGATCTTGCCTTCCTG-CATCGACGGTGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTGAC-T-GACAGCGAAGCAGATC
* * * * ** * * * *
32388104 GAAGACA-CA-AGCCTTACCTCCCT--CTGTTGTAGTGGAGCAGGTT
1 GAAGATAGCAGA-TCTTGCCTTCCTGACTG--ACAGCGAAGCAGATC
* *
32388147 GAAGATAGCAGATCTTGCCTTCCTGCACCGACACCGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTG-ACTGACAGCGAAGCAGATC
* * * * ** * * *
32388192 GAAGACACCAGCT-TTGCCTCCCTGGGTTACAGCGGAGCA-AGTT
1 GAAGATAGCAGATCTTGCCTTCCTGACTGACAGCGAAGCAGA-TC
* *
32388235 AAAGATAGCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATC
1 GAAGATAGCAGATCTTGCCTTCCTG-ACTGACAGCGAAGCAGATC
32388280 GAAGA
1 GAAGA
32388285 CACAAGCCTT
Statistics
Matches: 187, Mismatches: 65, Indels: 34
0.65 0.23 0.12
Matches are distributed among these distances:
41 1 0.01
42 2 0.01
43 58 0.31
44 65 0.35
45 58 0.31
46 1 0.01
47 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.21
Consensus pattern (44 bp):
GAAGATAGCAGATCTTGCCTTCCTGACTGACAGCGAAGCAGATC
Found at i:32388701 original size:44 final size:44
Alignment explanation
Indices: 32388653--32388879 Score: 155
Period size: 44 Copynumber: 5.2 Consensus size: 44
32388643 AGACACAAGC
* *
32388653 CTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTGAAGGTAGCAGAT
1 CTTGCCTCCCTCGATTGTAGTGGAGCAGGTTGAAGATAGCAGAT
* * * * * * *
32388697 CTTGCCTTCCT-GCATCGACAGTGAAGCAGATTGAAGACA-CA-AGC
1 CTTGCCTCCCTCG-ATTG-TAGTGGAGCAGGTTGAAGATAGCAGA-T
*
32388741 CTTGCCTCCCTCGATTGTAGTGGAGCAGGTTGAAGATAGTAGAT
1 CTTGCCTCCCTCGATTGTAGTGGAGCAGGTTGAAGATAGCAGAT
* * * * * *
32388785 CTTGCCTTCCT-GCATTG-ACG-GCGAAGTAGATCGAAGACA-CA-AGC
1 CTTGCCTCCCTCG-ATTGTA-GTG-G-AGCAGGTTGAAGATAGCAGA-T
* * *
32388829 CTTGCCTCCCTCGGTTGTAGTGGAACAGGTTGAAGATAGCAGGT
1 CTTGCCTCCCTCGATTGTAGTGGAGCAGGTTGAAGATAGCAGAT
32388873 CTTGCCT
1 CTTGCCT
32388880 TCCTGCATCG
Statistics
Matches: 134, Mismatches: 33, Indels: 32
0.67 0.17 0.16
Matches are distributed among these distances:
43 33 0.25
44 69 0.51
45 32 0.24
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (44 bp):
CTTGCCTCCCTCGATTGTAGTGGAGCAGGTTGAAGATAGCAGAT
Found at i:32390338 original size:21 final size:21
Alignment explanation
Indices: 32390312--32390363 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
32390302 TTCTGATTGT
*
32390312 TTATTATTATTATTGTTATTA
1 TTATTATTATTATTGTTACTA
*
32390333 TTATTATCATTATTGTTACTA
1 TTATTATTATTATTGTTACTA
32390354 TTATTATTAT
1 TTATTATTAT
32390364 CGCTTCGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (21 bp):
TTATTATTATTATTGTTACTA
Found at i:32390378 original size:3 final size:3
Alignment explanation
Indices: 32390312--32390363 Score: 68
Period size: 3 Copynumber: 17.3 Consensus size: 3
32390302 TTCTGATTGT
* * * *
32390312 TTA TTA TTA TTA TTG TTA TTA TTA TTA TCA TTA TTG TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32390360 TTA T
1 TTA T
32390364 CGCTTCGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:32391827 original size:15 final size:16
Alignment explanation
Indices: 32391803--32391835 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
32391793 ACTTATAACA
32391803 ATTTTATTTATTTAAT
1 ATTTTATTTATTTAAT
*
32391819 ATTTT-TTTATTTCAT
1 ATTTTATTTATTTAAT
32391834 AT
1 AT
32391836 AATTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTATTTATTTAAT
Found at i:32394262 original size:24 final size:24
Alignment explanation
Indices: 32394234--32394285 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32394224 TTTCTAGAAG
* *
32394234 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
*
32394258 ATTTAGCATTTATTAGCATAATTT
1 ATTTAGCATTTATTAGCATAATAT
32394282 ATTT
1 ATTT
32394286 GACCTACTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:32397258 original size:22 final size:21
Alignment explanation
Indices: 32397211--32397251 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
32397201 TAAAATTCTT
*
32397211 AAAATCTAATAAAATTAACTA
1 AAAATCTAATAAAATAAACTA
*
32397232 AAAATCATACTAAAATAAAC
1 AAAATC-TAATAAAATAAAC
32397252 AACAAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.63, C:0.12, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAATCTAATAAAATAAACTA
Found at i:32397519 original size:18 final size:18
Alignment explanation
Indices: 32397486--32397533 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
32397476 AATTTATTTA
*
32397486 TAAAATTA-TAATAAAAG
1 TAAAATTATTAATAAAAC
*
32397503 TAAAATTATTTATAAAAC
1 TAAAATTATTAATAAAAC
*
32397521 TATAATTA-TAATA
1 TAAAATTATTAATA
32397534 GTAATTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
TAAAATTATTAATAAAAC
Found at i:32400185 original size:21 final size:21
Alignment explanation
Indices: 32400155--32400216 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 21
32400145 TACGAGGGCT
32400155 GTGGAGGTATGGGACTGCTGTA
1 GTGGAGGTATGGG-CTGCTGTA
*
32400177 GTGG-GGTATGGGGCCGCTGTA
1 GTGGAGGTAT-GGGCTGCTGTA
32400198 GTGGAGGTATGAGGCTGCT
1 GTGGAGGTATG-GGCTGCT
32400217 TCATGGTTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 17 0.49
22 18 0.51
ACGTcount: A:0.15, C:0.11, G:0.48, T:0.26
Consensus pattern (21 bp):
GTGGAGGTATGGGCTGCTGTA
Found at i:32401158 original size:72 final size:72
Alignment explanation
Indices: 32400921--32401706 Score: 583
Period size: 72 Copynumber: 10.7 Consensus size: 72
32400911 AACATGTGAA
* *
32400921 CTGAGGCTCAACTCACTTT-TCGCAATATGAGTTGATTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCT
*
32400985 CAGCGTGTC
64 CAACGTGTC
* *
32400994 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGAAGAAATTGAAAATACCTC
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTC
32401059 AACGTGTC
65 AACGTGTC
*
32401067 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
*
32401132 ATGTGTC
66 ACGTGTC
* * * * * *
32401139 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAATGAAA--ACA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAAT-TTT-GAAAACAGAA-ATTGAAATTACC
** *
32401202 GAAATG-GAAAATAC
63 TCAACGTG----T-C
* * ** * * * *
32401216 CTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA-ATTAAAATACCA-CAGT
1 CT--GAG-G--CT----C-AA-CTCATTTCTCGCAATATGAGTTGAATTTTGAAA-A-CAGAAAT
* *
32401279 GTGTAATCTGAAGCTCAAC---T-
53 -TGAAAT-T--ACCTCAACGTGTC
* * * * * * * *** ** *
32401299 C--A-CCTC-TCGCA-ATAT-G-AGT-TGATTTTTTTTTAAAAAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTT--TGAAAACAGAAATTGAAATTACCT
* *
32401356 CAGCATGTGAAC
64 CA--ACGTG-TC
** * * *
32401368 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACA-AAATTGAAAATACCT
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
32401431 CAACGTGT-
64 CAACGTGTC
*
32401439 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAA-TTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
*
32401503 GCGTGTC
66 ACGTGTC
*
32401510 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
*
32401575 GCGTGTC
66 ACGTGTC
*
32401582 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
*
32401647 GCGTGTC
66 ACGTGTC
** * *
32401654 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTG-ATTTTGAAAAACAAAAATT
1 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATT
32401707 AAAAGGCTTA
Statistics
Matches: 583, Mismatches: 76, Indels: 109
0.76 0.10 0.14
Matches are distributed among these distances:
62 5 0.01
64 7 0.01
65 9 0.02
66 4 0.01
67 6 0.01
68 3 0.01
69 11 0.02
70 22 0.04
71 47 0.08
72 254 0.44
73 114 0.20
74 9 0.02
75 27 0.05
76 11 0.02
77 2 0.00
78 4 0.01
79 2 0.00
80 1 0.00
82 2 0.00
83 1 0.00
85 5 0.01
86 9 0.02
87 3 0.01
88 22 0.04
91 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (72 bp):
CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
ACGTGTC
Found at i:32401538 original size:143 final size:146
Alignment explanation
Indices: 32400921--32401692 Score: 622
Period size: 145 Copynumber: 5.3 Consensus size: 146
32400911 AACATGTGAA
* * * * *
32400921 CTGAGGCTCAACTCACTTTTCGCAATATGAGTTGA-TTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
* * *
32400985 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGAAGAAATTGA
66 CAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAA-CAGAAATTGA
* *
32401050 AAATACCTCAACGTGTC
130 AATTACCTCAGCGTGTC
* ** * * *
32401067 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
* * * *
32401130 CAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATAAT
66 CAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTG------------A-AT--T-TT
* * * * *
32401195 GAAAACAGAAATGGAAAATACCTCGGTGTGAC
115 GAAAACAGAAATTGAAATTACCTCAGCGTGTC
* ** * * * *
32401227 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---AATTAAAATACCA-CAGTGTG-TAAT-
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAA-A-CAGAAAT-TGAAAATA
* * * * * * * * * * *** *
32401286 -CTGAA-G-CTCAACTCA-CCTC-TCGCA-ATAT-G-AGT-TGA-TTTTTTTTTAAAAAAAACAG
63 CCTCAACGTGTC--CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTT---GAAAACAG
* *
32401341 AAATTGAAAATACCTCAGCATGTGAAC
123 AAATTGAAATTACCTCAGC--GTG-TC
32401368 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACA-AAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
32401431 CAACGTGT-CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAA-TTTGAAAACAGAAATTGAA
66 CAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAA
32401494 ATTACCTCAGCGTGTC
131 ATTACCTCAGCGTGTC
** * *
32401510 CTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
32401573 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAA
66 CAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAA
32401638 ATTACCTCAGCGTGTC
131 ATTACCTCAGCGTGTC
* *
32401654 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTT
32401693 GAAAAACAAA
Statistics
Matches: 502, Mismatches: 76, Indels: 96
0.74 0.11 0.14
Matches are distributed among these distances:
135 1 0.00
136 1 0.00
138 24 0.05
140 37 0.07
141 21 0.04
142 27 0.05
143 82 0.16
144 70 0.14
145 94 0.19
146 34 0.07
147 2 0.00
148 5 0.01
149 2 0.00
151 2 0.00
152 3 0.01
153 2 0.00
154 1 0.00
155 2 0.00
156 5 0.01
157 5 0.01
158 8 0.02
159 5 0.01
160 59 0.12
161 10 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (146 bp):
CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
CAACGTGTCCTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAA
ATTACCTCAGCGTGTC
Found at i:32401805 original size:122 final size:125
Alignment explanation
Indices: 32401585--32401832 Score: 317
Period size: 122 Copynumber: 2.0 Consensus size: 125
32401575 GCGTGTCCTG
** * * * *
32401585 AGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATAAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCG
32401650 TGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAA
66 TGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAAAA-AAAAATTAAA
* * * *
32401710 AGGCTTAACTCACCTCTCGCAATATGAG-TCAA-TTT-AAAACATAAACTAAAAATACCTCGGCG
1 AGGCTCAACTCACCTCTCGCAATATAAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCG
* * * *
32401772 TG-CCTCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAAAAAAATTTAAA
66 TGTCCT-GAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAAAAAAAAATTAAA
32401832 A
1 A
32401833 ATACCTCAAC
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
121 3 0.03
122 65 0.61
123 12 0.11
124 3 0.03
125 24 0.22
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.29
Consensus pattern (125 bp):
AGGCTCAACTCACCTCTCGCAATATAAGTTCAATTTTGAAAACAGAAACTAAAAATACCTCAGCG
TGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAAAAAAAAATTAAA
Found at i:32401854 original size:72 final size:72
Alignment explanation
Indices: 32401710--32401886 Score: 211
Period size: 72 Copynumber: 2.5 Consensus size: 72
32401700 AAAAATTAAA
* * * * * **
32401710 AGGCTTAACTCACCTCTCGCAATATGAG-TCA--ATTTAAAACATAAACTAAAAATACCTCGGCG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACAAAAACTAAAAATACCTCAACG
32401772 TGCCTCG
66 TGCCTCG
*
32401779 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAA-AAAAATTTAAAAATACCTCAAC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACAAAAA-CTAAAAATACCTCAAC
* *
32401843 GTGTCTTG
65 GTGCCTCG
32401851 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
32401887 CCTTGGAAAG
Statistics
Matches: 93, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
69 26 0.28
70 2 0.02
71 5 0.05
72 60 0.65
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (72 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTAAAACAAAAACTAAAAATACCTCAACG
TGCCTCG
Found at i:32410099 original size:16 final size:16
Alignment explanation
Indices: 32410073--32410116 Score: 63
Period size: 16 Copynumber: 2.7 Consensus size: 16
32410063 AGTATGGGAT
32410073 ATGCAATGAATGAATTG-
1 ATGC-ATGAATGAA-TGA
32410090 ATGCATGAATGAATGA
1 ATGCATGAATGAATGA
32410106 ATGCATGAATG
1 ATGCATGAATG
32410117 TCAAATGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 2 0.08
16 20 0.77
17 4 0.15
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.27
Consensus pattern (16 bp):
ATGCATGAATGAATGA
Found at i:32415140 original size:22 final size:22
Alignment explanation
Indices: 32415083--32415141 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
32415073 TACGAGGGCT
* *
32415083 GTGGAGGTATGGGACTACTGTA
1 GTGGAGGTATGGGGCCACTGTA
* *
32415105 GTGGGGGTATGGGGCCGCTGTA
1 GTGGAGGTATGGGGCCACTGTA
32415127 GTGGAGGTATGGGGC
1 GTGGAGGTATGGGGC
32415142 TGCTTCATGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.15, C:0.10, G:0.51, T:0.24
Consensus pattern (22 bp):
GTGGAGGTATGGGGCCACTGTA
Found at i:32416002 original size:22 final size:22
Alignment explanation
Indices: 32415977--32416019 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
32415967 ATAAGCTCAT
*
32415977 TTACATTCAATTAATAAATGTA
1 TTACATTCAATGAATAAATGTA
32415999 TTACATTCAATGAATAAATGT
1 TTACATTCAATGAATAAATGT
32416020 GAATTAAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (22 bp):
TTACATTCAATGAATAAATGTA
Found at i:32417540 original size:18 final size:19
Alignment explanation
Indices: 32417517--32417555 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
32417507 GAAACTCTAT
32417517 ATCCTTCAGGGATTTT-AA
1 ATCCTTCAGGGATTTTCAA
*
32417535 ATCCTTCTGGGATTTTCAA
1 ATCCTTCAGGGATTTTCAA
32417554 AT
1 AT
32417556 AAATTTCACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (19 bp):
ATCCTTCAGGGATTTTCAA
Found at i:32424254 original size:87 final size:87
Alignment explanation
Indices: 32424108--32424383 Score: 367
Period size: 87 Copynumber: 3.2 Consensus size: 87
32424098 TATTCTGATT
** * * * *
32424108 TGATCTGGCAGTTTAACTGCGACTTATCGTTACAGTGGTTTACCTCACTGTACCACTTGTATGTC
1 TGATCTGGCAGTTTAACTGTAACTTATCGGTATAGCGGTTTACCACACTGTACCACTTGTATGTC
* *
32424173 AGCTTTGCTGCGTACTATTATA
66 AGCTTTACTGCGTACTATTATC
* *
32424195 TGATCTGGCAGTTTAACTATAACTTATCGGTATAGCGGTTTACCGCACTGTACCACTTGTATGTC
1 TGATCTGGCAGTTTAACTGTAACTTATCGGTATAGCGGTTTACCACACTGTACCACTTGTATGTC
32424260 AGCTTTACTGCGTACTATTATC
66 AGCTTTACTGCGTACTATTATC
* * * * *
32424282 TGATCTGGCAGTTTAATTGTAACTTATCAGTATAGCGGTTTACCACACTGTATC-GTATGTACGT
1 TGATCTGGCAGTTTAACTGTAACTTATCGGTATAGCGGTTTACCACACTGTACCACT-TGTATGT
*
32424346 -AGCTTTACTGCATACTATTATC
65 CAGCTTTACTGCGTACTATTATC
**
32424368 TGATCTATCAGTTTAA
1 TGATCTGGCAGTTTAA
32424384 ACTGCAACAT
Statistics
Matches: 169, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
86 36 0.21
87 133 0.79
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (87 bp):
TGATCTGGCAGTTTAACTGTAACTTATCGGTATAGCGGTTTACCACACTGTACCACTTGTATGTC
AGCTTTACTGCGTACTATTATC
Found at i:32426220 original size:25 final size:24
Alignment explanation
Indices: 32426192--32426358 Score: 115
Period size: 25 Copynumber: 6.8 Consensus size: 24
32426182 CATATTTTAT
*
32426192 AATCAGAATAACATTTCATTATCA
1 AATCAGAATGACATTTCATTATCA
* * *
32426216 TAATCGGAATGACATTTGATTATTA
1 -AATCAGAATGACATTTCATTATCA
* *
32426241 GAATCAGAGTGACATTTTATTATCA
1 -AATCAGAATGACATTTCATTATCA
* * *
32426266 AATCAAAACGACATATCA-TATTCA
1 AATCAGAATGACATTTCATTA-TCA
* *
32426290 GAATCA-AGATGATATTT-ATTCATTAA
1 -AATCAGA-ATGACATTTCATT-A-TCA
* *
32426316 AATAAGAATAACATTTCATTATCA
1 AATCAGAATGACATTTCATTATCA
* *
32426340 AATCAGAATGTCATATCAT
1 AATCAGAATGACATTTCAT
32426359 AATTTACTTA
Statistics
Matches: 109, Mismatches: 26, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
23 2 0.02
24 35 0.32
25 64 0.59
26 8 0.07
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (24 bp):
AATCAGAATGACATTTCATTATCA
Found at i:32435231 original size:20 final size:21
Alignment explanation
Indices: 32435206--32435247 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
32435196 GATGACCGCA
*
32435206 TCTTGTT-TCTTTCTTTTTTG
1 TCTTGTTGTCTTTATTTTTTG
32435226 TCTTGTTGTCTTTATTTTTTG
1 TCTTGTTGTCTTTATTTTTTG
32435247 T
1 T
32435248 GATTGAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.02, C:0.12, G:0.12, T:0.74
Consensus pattern (21 bp):
TCTTGTTGTCTTTATTTTTTG
Found at i:32436437 original size:3 final size:3
Alignment explanation
Indices: 32436429--32436479 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
32436419 TTATCATATT
32436429 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32436477 TAA
1 TAA
32436480 AGAATTACAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:32439060 original size:21 final size:21
Alignment explanation
Indices: 32439030--32439069 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32439020 TGACATTTTG
*
32439030 TTATTCTTTATTTTACTTAGC
1 TTATTCTTTAATTTACTTAGC
* *
32439051 TTATTTTTTAATTTGCTTA
1 TTATTCTTTAATTTACTTA
32439070 TAACCTTTGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.10, G:0.05, T:0.65
Consensus pattern (21 bp):
TTATTCTTTAATTTACTTAGC
Found at i:32440040 original size:179 final size:179
Alignment explanation
Indices: 32439740--32440084 Score: 519
Period size: 179 Copynumber: 1.9 Consensus size: 179
32439730 ATAACTGTTA
* * * * *
32439740 AGCCAGTTTACGTTTTATAACCCCTATTAGTTGGACACGGACCAAGGACGGATACACGGATCATC
1 AGCCAGTTTACGTTTTACAACCCCTATTAGATGGACACGAACCAAGGACAGATACACGAATCATC
** *
32439805 TGACAACCACGCCAATCTGACAGTCAGTGCCTCATCGAAACGATCGAAGTATAATTTGTGCCTAA
66 CAACAACCACGCCAATCTGACAGTCAGTGCCTCATCGAAACGACCGAAGTATAATTTGTGCCTAA
** *
32439870 CACTCATCGGTATATCCAATGTAAAATGTGCTCCCAACAGTTATTGGGC
131 CACTCATCAATATATCCAATGTAAAATGTGCGCCCAACAGTTATTGGGC
*
32439919 AGCCAGTTTACGTTTTACAACCCCTATTAGATGGGCACGAACCAAGGACAGATACACGAATCATC
1 AGCCAGTTTACGTTTTACAACCCCTATTAGATGGACACGAACCAAGGACAGATACACGAATCATC
* * * * *
32439984 CAACCATCATGTCAATCTGGCAGTCAGTGCCTCATCGAAACGACCGAAGTATAATTTGTGCCTAA
66 CAACAACCACGCCAATCTGACAGTCAGTGCCTCATCGAAACGACCGAAGTATAATTTGTGCCTAA
* *
32440049 CGCTCATCAATATATCCGATGTAAAATGTGCGCCCA
131 CACTCATCAATATATCCAATGTAAAATGTGCGCCCA
32440085 GTAGTTATCA
Statistics
Matches: 147, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
179 147 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (179 bp):
AGCCAGTTTACGTTTTACAACCCCTATTAGATGGACACGAACCAAGGACAGATACACGAATCATC
CAACAACCACGCCAATCTGACAGTCAGTGCCTCATCGAAACGACCGAAGTATAATTTGTGCCTAA
CACTCATCAATATATCCAATGTAAAATGTGCGCCCAACAGTTATTGGGC
Found at i:32443778 original size:44 final size:45
Alignment explanation
Indices: 32443626--32443817 Score: 180
Period size: 45 Copynumber: 4.3 Consensus size: 45
32443616 GGTCACCATG
* * * * *
32443626 GCAAATCTTATATCCCTTAAA-TTGCAGTGGAGAAAATTGAAGA-A
1 GCAAATCTTATCTCCC-TAAAGTTGTAGTGGAGCAGATTGAAAATA
* *
32443670 -CTAATCTTATCTCCCTAAAATTGTAGTGGAGCAGATTGAAAATA
1 GCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAAATA
* *
32443714 GCAAATCTTATCTCTCTAAAGTTGTAGTAGG-GCAGATT-AAATCTA
1 GCAAATCTTATCTCCCTAAAGTTGTAGT-GGAGCAGATTGAAA-ATA
* * *
32443759 -CAAATCTTATCTCCCTAAAGCTGTAGTGGAGCAAAATTGAAGATA
1 GCAAATCTTATCTCCCTAAAGTTGTAGTGGAGC-AGATTGAAAATA
* *
32443804 GCGAGTCTTATCTC
1 GCAAATCTTATCTC
32443818 TCTGAAGTGG
Statistics
Matches: 122, Mismatches: 17, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
42 4 0.03
43 33 0.27
44 31 0.25
45 39 0.32
46 15 0.12
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (45 bp):
GCAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAAATA
Found at i:32443843 original size:90 final size:89
Alignment explanation
Indices: 32443672--32443862 Score: 256
Period size: 90 Copynumber: 2.1 Consensus size: 89
32443662 TTGAAGAACT
* * *
32443672 AATCTTATCTCCCTAAAATTGTAGTGGAGCAGATTGAAAATAGCAAATCTTATCTCTCTAAAGTT
1 AATCTTATCTCCCTAAAACTGTAGTGGAGCAAATTGAAAATAGCAAATCTTATCTCTCTAAAGTG
* * *
32443737 GTAGTAGGGCAGATTAAATCTACA
66 GCAGTAGAGCAGATTAAAGCTACA
* * * * *
32443761 AATCTTATCTCCCTAAAGCTGTAGTGGAGCAAAATTGAAGATAGCGAGTCTTATCTCTCTGAAGT
1 AATCTTATCTCCCTAAAACTGTAGTGGAGC-AAATTGAAAATAGCAAATCTTATCTCTCTAAAGT
*
32443826 GGCAGTAGAGCATATTAAAGCTACA
65 GGCAGTAGAGCAGATTAAAGCTACA
*
32443851 AACCTTATCTCC
1 AATCTTATCTCC
32443863 TTGAAGTTAC
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
89 28 0.32
90 60 0.68
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (89 bp):
AATCTTATCTCCCTAAAACTGTAGTGGAGCAAATTGAAAATAGCAAATCTTATCTCTCTAAAGTG
GCAGTAGAGCAGATTAAAGCTACA
Found at i:32446459 original size:44 final size:43
Alignment explanation
Indices: 32446351--32446696 Score: 230
Period size: 44 Copynumber: 7.9 Consensus size: 43
32446341 CATCGTCGCG
* * * *
32446351 AATCTTATCTCCCT-AAAGTTGCAGTGAAGCAGATTAAAGAAACA
1 AATCTTATCT-CCTGAAA-TTGCAGTGGAGTAGATTGAAGATACA
* ** * ***
32446395 AATCTTCTC-CCTGAGGTTGCAATGGAGTAGATTGAAGATGTT
1 AATCTTATCTCCTGAAATTGCAGTGGAGTAGATTGAAGATACA
* * *
32446437 AATATTATCTCCTTGAAATTGCAGTGGAGTAGATTGAAAACACA
1 AATCTTATCTCC-TGAAATTGCAGTGGAGTAGATTGAAGATACA
* * *
32446481 AATCTTATCTCCCTGAAGTCGCAGTGGAGTAGATTGAAGTTACA
1 AATCTTATCT-CCTGAAATTGCAGTGGAGTAGATTGAAGATACA
* **
32446525 AATCTCATCTTCCT-AAAGTTGCAGTGGAGTAGATTGAAGATAGTG
1 AATCTTATC-TCCTGAAA-TTGCAGTGGAGTAGATTGAAGATA-CA
* * * * * *
32446570 AATCTTATCTCTCTGAAGTTGCAGTAGAGAAGATTAAAGTTATA
1 AATCTTATCTC-CTGAAATTGCAGTGGAGTAGATTGAAGATACA
* * * * * * *
32446614 AACCTGATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGTTACA
1 AATCTTATCT-CCTGAAATTGCAGTGGAGTAGATTGAAGATACA
* * * * **
32446658 AATCTCATTTCCCTGAAGTTACAGTGGAACAGATTGAAG
1 AATCTTATCT-CCTGAAATTGCAGTGGAGTAGATTGAAG
32446697 CTATAAGTTA
Statistics
Matches: 239, Mismatches: 53, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
42 28 0.12
43 5 0.02
44 170 0.71
45 34 0.14
46 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (43 bp):
AATCTTATCTCCTGAAATTGCAGTGGAGTAGATTGAAGATACA
Found at i:32446547 original size:88 final size:88
Alignment explanation
Indices: 32446351--32446886 Score: 389
Period size: 95 Copynumber: 5.9 Consensus size: 88
32446341 CATCGTCGCG
* * *
32446351 AATCTTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAGAAACAAATC-T-TCTCCCTGAGGTTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTTG
* * * *
32446414 CAATGGAGTAGATTGAAGATGTT
66 CAGTGGAGTAGATTGAAGTTATA
* * * *
32446437 AATATTATCTCCTTGAAA-TTGCAGTGGAGTAGATTGAAA-ACACAAATCTTATCTCCCTGAAGT
1 AATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGATT-AAAGATACAAATCTTATCTCCCTGAAGT
* *
32446500 CGCAGTGGAGTAGATTGAAGTTACA
64 TGCAGTGGAGTAGATTGAAGTTATA
* * * * ** *
32446525 AATCTCATCTTCCTAAAGTTGCAGTGGAGTAGATTGAAGATAGTGAATCTTATCTCTCTGAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATA-CAAATCTTATCTCCCTGAAGTT
* * *
32446590 GCAGTAGAGAAGATTAAAGTTATA
65 GCAGTGGAGTAGATTGAAGTTATA
* * * * * * * *
32446614 AACCTGATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGTTACAAATCTCATTTCCCTGAAGTTA
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTTG
**
32446679 CAGTGGAACAGATTGAAGCTATAAGTTACA
66 CAGTGGAGTAGATTGAAG-T-T-A--T--A
* * * * * * * *
32446709 AATTTTATCTCCCTGAAGTTGCAGTGCATCAGA-TAAAGGCTACATATCTTATTTCCCTAAAGTT
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA-GATACAAATCTTATCTCCCTGAAGTT
* * * * *
32446773 GTAGTAGAATAGATTAAAACGAAAAATTACA
65 GCAGTGGAGTAGATT-----G--AAGTTATA
* * * * * * *
32446804 AATCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTAATCTCCCTGAAATTG
1 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTTG
*
32446869 CAGTGGAATAGATTGAAG
66 CAGTGGAGTAGATTGAAG
32446887 CAACACATAT
Statistics
Matches: 353, Mismatches: 74, Indels: 44
0.75 0.16 0.09
Matches are distributed among these distances:
86 35 0.10
87 12 0.03
88 92 0.26
89 73 0.21
90 2 0.01
91 1 0.00
93 1 0.00
94 4 0.01
95 123 0.35
96 4 0.01
99 1 0.00
100 2 0.01
101 1 0.00
102 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.30
Consensus pattern (88 bp):
AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGATACAAATCTTATCTCCCTGAAGTTG
CAGTGGAGTAGATTGAAGTTATA
Found at i:32446610 original size:89 final size:88
Alignment explanation
Indices: 32446357--32446642 Score: 244
Period size: 89 Copynumber: 3.3 Consensus size: 88
32446347 CGCGAATCTT
* * * * * * *
32446357 ATCTCCCTAAAGTTGCAGTGAAGCAGATT-AAAGAAACAAATC-T-TCTCCCTGAGGTTGCAATG
1 ATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAA-ACACAAATCTTATCTCCCTGAAGTCGCAGTA
* * *
32446419 GAGTAGATTGAAGATGTTA-ATA--TT
65 GAGAAGATT-AA-A-GTTACAAACCTC
* *
32446443 ATCTCCTTGAAA-TTGCAGTGGAGTAGATTGAAAACACAAATCTTATCTCCCTGAAGTCGCAGTG
1 ATCTCCCT-AAAGTTGCAGTGGAGTAGATTGAAAACACAAATCTTATCTCCCTGAAGTCGCAGTA
* * *
32446507 GAGTAGATTGAAGTTACAAATCTC
65 GAGAAGATTAAAGTTACAAACCTC
* * * ** * *
32446531 ATCTTCCTAAAGTTGCAGTGGAGTAGATTGAAGATAGTGAATCTTATCTCTCTGAAGTTGCAGTA
1 ATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAAACA-CAAATCTTATCTCCCTGAAGTCGCAGTA
* *
32446596 GAGAAGATTAAAGTTATAAACCTG
65 GAGAAGATTAAAGTTACAAACCTC
*
32446620 ATCTCCCTGAAGTTGCAGTGGAG
1 ATCTCCCTAAAGTTGCAGTGGAG
32446643 CAAATTAAAG
Statistics
Matches: 165, Mismatches: 26, Indels: 15
0.80 0.13 0.07
Matches are distributed among these distances:
85 4 0.02
86 33 0.20
87 11 0.07
88 54 0.33
89 63 0.38
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (88 bp):
ATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAAACACAAATCTTATCTCCCTGAAGTCGCAGTAG
AGAAGATTAAAGTTACAAACCTC
Found at i:32446624 original size:133 final size:132
Alignment explanation
Indices: 32446357--32446696 Score: 384
Period size: 133 Copynumber: 2.6 Consensus size: 132
32446347 CGCGAATCTT
* * ** * * *
32446357 ATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAGAAACAAATCT--TCTCCCTGAGGTTGCAATGG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTCATCTTCCTGAAGTTGCAGTGG
* * * *
32446420 AGTAGATTGAAGATGTTAATATTATCTCCTTGAAATTGCAGTGGAGTAGATTGAAAACACAAATC
66 AGTAGATTGAAGATGTGAATATTATCTCCTTGAAATTGCAGTAGAGAAGATTGAAAACACAAACC
*
32446485 TT
131 TG
* * * *
32446487 ATCTCCCTGAAGTCGCAGTGGAGTAGATTGAAGTTACAAATCTCATCTTCCTAAAGTTGCAGTGG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTCATCTTCCTGAAGTTGCAGTGG
* * ** *
32446552 AGTAGATTGAAGATAGTGAATCTTATCT-CTCTGAAGTTGCAGTAGAGAAGATT-AAAGTTATAA
66 AGTAGATTGAAGAT-GTGAATATTATCTCCT-TGAAATTGCAGTAGAGAAGATTGAAA-ACACAA
32446615 ACCTG
128 ACCTG
* *
32446620 ATCTCCCTGAAGTTGCAGTGGAGCAAATTAAAGTTACAAATCTCAT-TTCCCTGAAGTTACAGTG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTCATCTT-CCTGAAGTTGCAGTG
**
32446684 GAACAGATTGAAG
65 GAGTAGATTGAAG
32446697 CTATAAGTTA
Statistics
Matches: 175, Mismatches: 29, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
130 36 0.21
132 37 0.21
133 102 0.58
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (132 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTTACAAATCTCATCTTCCTGAAGTTGCAGTGG
AGTAGATTGAAGATGTGAATATTATCTCCTTGAAATTGCAGTAGAGAAGATTGAAAACACAAACC
TG
Found at i:32446710 original size:51 final size:51
Alignment explanation
Indices: 32446650--32446850 Score: 173
Period size: 51 Copynumber: 4.1 Consensus size: 51
32446640 GAGCAAATTA
* * *
32446650 AAGTTACAAATCTCATTTCCCTGAAGTTACAGTGGAACAGATTGAAGCTAT
1 AAGTTACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
* * * *
32446701 AAGTTACAAATTTTATCTCCCTGAAGTTGCAGTGCATCAGA-TAAAG----
1 AAGTTACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
* * * * * * * * * * *
32446747 --GCTACATATCTTATTTCCCTAAAGTTGTAGTAGAATAGATTAAAACGAA
1 AAGTTACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
* *
32446796 AAATTACAAATCTCATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAGTTACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
32446847 AAGT
1 AAGT
32446851 CTAATCTCCC
Statistics
Matches: 111, Mismatches: 32, Indels: 14
0.71 0.20 0.09
Matches are distributed among these distances:
44 29 0.26
45 4 0.04
50 4 0.04
51 74 0.67
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (51 bp):
AAGTTACAAATCTCATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAT
Done.