Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 126 of 172
Found at i:35796285 original size:14 final size:14
Alignment explanation
Indices: 35796268--35796300 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
35796258 CCAAAAAAAG
35796268 AAGAAGAAAAAGAA
1 AAGAAGAAAAAGAA
*
35796282 AAGAAGAAGAAGAA
1 AAGAAGAAAAAGAA
35796296 AAGAA
1 AAGAA
35796301 ATGGAAAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (14 bp):
AAGAAGAAAAAGAA
Found at i:35796288 original size:20 final size:19
Alignment explanation
Indices: 35796260--35796301 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
35796250 TCCTTTAACC
35796260 AAAAAAAGAAGAAGAAAAAG
1 AAAAAAAGAAGAAG-AAAAG
*
35796280 AAAAGAAGAAGAAGAAAAG
1 AAAAAAAGAAGAAGAAAAG
35796299 AAA
1 AAA
35796302 TGGAAAAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (19 bp):
AAAAAAAGAAGAAGAAAAG
Found at i:35800662 original size:30 final size:31
Alignment explanation
Indices: 35800627--35800705 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 31
35800617 TTTAAACCAT
*
35800627 AATTAAAATTTCATGTGTACAA-T-TACACTA
1 AATTAAAATTT-ATGTATACAATTGTACACTA
* * *
35800657 AATTAAAATTTATGTATATAATTGTATATTA
1 AATTAAAATTTATGTATACAATTGTACACTA
35800688 AATTAAAATTTATGTATA
1 AATTAAAATTTATGTATA
35800706 ATTTTAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 8 0.19
30 12 0.28
31 23 0.53
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.43
Consensus pattern (31 bp):
AATTAAAATTTATGTATACAATTGTACACTA
Found at i:35800725 original size:17 final size:19
Alignment explanation
Indices: 35800690--35800728 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
35800680 GTATATTAAA
*
35800690 TTAAAATTTATGTATAATT
1 TTAAAATTTATGTACAATT
35800709 TTAAAATTTAT-T-CAATT
1 TTAAAATTTATGTACAATT
35800726 TTA
1 TTA
35800729 TTAGAGTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 7 0.37
18 1 0.05
19 11 0.58
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (19 bp):
TTAAAATTTATGTACAATT
Found at i:35802671 original size:83 final size:81
Alignment explanation
Indices: 35802584--35802769 Score: 187
Period size: 83 Copynumber: 2.3 Consensus size: 81
35802574 TTTTCAACAT
* * *
35802584 CAACATAACGAGGTGGAGATTAG-TTCTAATTTTCAACATCAACATGGCG-AGACGAGGATCAGT
1 CAACATGACGAGGTGGAGATCAGTTTC-AATTTTCAACATCAACATGGCGAAGACGA-GATCA-A
*
35802647 TTCTATTTCTTTTTAACCAC
63 TTCCATTT-TTTTTAACCAC
* *** *** **
35802667 CAACATGGCGAGGAAAAGATCAGTTTCAATTTTTTTCATCAACATGGCGAAGTGGAGATCAATTC
1 CAACATGACGAGGTGGAGATCAGTTTCAATTTTCAACATCAACATGGCGAAGACGAGATCAATTC
*
35802732 CATTTTTTTTTACCAC
66 CATTTTTTTTAACCAC
*
35802748 CAACATGACAAGGTGGAGATCA
1 CAACATGACGAGGTGGAGATCA
35802770 ATTTTGATTT
Statistics
Matches: 82, Mismatches: 19, Indels: 6
0.77 0.18 0.06
Matches are distributed among these distances:
81 27 0.33
82 7 0.09
83 41 0.50
84 7 0.09
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (81 bp):
CAACATGACGAGGTGGAGATCAGTTTCAATTTTCAACATCAACATGGCGAAGACGAGATCAATTC
CATTTTTTTTAACCAC
Found at i:35814539 original size:39 final size:39
Alignment explanation
Indices: 35814488--35814563 Score: 100
Period size: 39 Copynumber: 1.9 Consensus size: 39
35814478 AATTTTTTTG
* * * *
35814488 ATTTTTTTGTATTTTTTAAATT-TTGAATTTTTTTATTAT
1 ATTTTTTAGTATTTTAT-AATTATTAAATTATTTTATTAT
35814527 ATTTTTTAGTATTTTATAATTATTAAATTATTTTATT
1 ATTTTTTAGTATTTTATAATTATTAAATTATTTTATT
35814564 GACATGACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 4 0.12
39 28 0.88
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (39 bp):
ATTTTTTAGTATTTTATAATTATTAAATTATTTTATTAT
Found at i:35816384 original size:22 final size:22
Alignment explanation
Indices: 35816356--35816425 Score: 65
Period size: 22 Copynumber: 3.1 Consensus size: 22
35816346 AATTTAAATT
35816356 TTATATTTATCAAACAATTTAA
1 TTATATTTATCAAACAATTTAA
35816378 TTATATTTAAT-AATTA-AATTTAA
1 TTATATTT-ATCAA--ACAATTTAA
* *
35816401 GTA-ATTTATCAAACAAATTTTA
1 TTATATTTATCAAAC-AATTTAA
35816423 TTA
1 TTA
35816426 CTTAAATTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
20 1 0.03
21 2 0.05
22 24 0.62
23 11 0.28
24 1 0.03
ACGTcount: A:0.46, C:0.06, G:0.01, T:0.47
Consensus pattern (22 bp):
TTATATTTATCAAACAATTTAA
Found at i:35816437 original size:48 final size:42
Alignment explanation
Indices: 35816344--35816446 Score: 107
Period size: 48 Copynumber: 2.3 Consensus size: 42
35816334 TTAATTTTTT
* *
35816344 ATAATTTAAATTTTATATTTATCAAACAATTTAATTATATTTA
1 ATAA-TTAAATTTAATATTTATCAAACAATTTAATTATAATTA
*
35816387 ATAATTAAATTTAAGTAATTTATCAAACAAATTTTATTACTTAAATTA
1 ATAATTAAATTTAA-T-ATTTATCAAAC-AATTTAATTA--T-AATTA
*
35816435 ATAGTTAAATTT
1 ATAATTAAATTT
35816447 TCAATACTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
42 9 0.18
43 5 0.10
44 11 0.22
45 9 0.18
47 1 0.02
48 15 0.30
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (42 bp):
ATAATTAAATTTAATATTTATCAAACAATTTAATTATAATTA
Found at i:35822759 original size:17 final size:17
Alignment explanation
Indices: 35822737--35822769 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
35822727 CAACAAATAT
35822737 TTTAAAAATAATTATTA
1 TTTAAAAATAATTATTA
35822754 TTTAAAAATAATTATT
1 TTTAAAAATAATTATT
35822770 TAAAAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTAAAAATAATTATTA
Found at i:35822769 original size:14 final size:14
Alignment explanation
Indices: 35822750--35822776 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35822740 AAAAATAATT
35822750 ATTATTTAAAAATA
1 ATTATTTAAAAATA
35822764 ATTATTTAAAAAT
1 ATTATTTAAAAAT
35822777 CACATTTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTATTTAAAAATA
Found at i:35826593 original size:15 final size:14
Alignment explanation
Indices: 35826572--35826607 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
35826562 ATAATCATTA
*
35826572 ATAATTATCTTAAT
1 ATAATTATCCTAAT
35826586 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
35826601 ATAATTA
1 ATAATTA
35826608 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:35826838 original size:11 final size:11
Alignment explanation
Indices: 35826821--35826853 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
35826811 TGATCATACT
35826821 CATAATAAATA
1 CATAATAAATA
*
35826832 TATAATAAATA
1 CATAATAAATA
35826843 CATAA-AAATA
1 CATAATAAATA
35826853 C
1 C
35826854 GTTATTCTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.27
Consensus pattern (11 bp):
CATAATAAATA
Found at i:35827500 original size:32 final size:31
Alignment explanation
Indices: 35827422--35827508 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 31
35827412 TCTATAAAAT
* *
35827422 GATTTACTGGAAAATATTTTCTGGTGTTTGGTA
1 GATTT-CT-GAAAATATTTTCTGCTGTTTGGCA
* * *
35827455 AATCTGTGTAAAATATTTTCTGCTGTTTGGCA
1 GATTTCTG-AAAATATTTTCTGCTGTTTGGCA
35827487 GATTTCCTGAAAATATTTTCTG
1 GATTT-CTGAAAATATTTTCTG
35827509 GAAAAGTTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
31 1 0.02
32 38 0.86
33 5 0.11
ACGTcount: A:0.25, C:0.10, G:0.20, T:0.45
Consensus pattern (31 bp):
GATTTCTGAAAATATTTTCTGCTGTTTGGCA
Found at i:35827535 original size:11 final size:11
Alignment explanation
Indices: 35827519--35827572 Score: 69
Period size: 11 Copynumber: 5.2 Consensus size: 11
35827509 GAAAAGTTGT
35827519 TTTTACATATA
1 TTTTACATATA
35827530 TTTTACATATA
1 TTTTACATATA
* *
35827541 -TTAATATATA
1 TTTTACATATA
35827551 TTTTAC--ATA
1 TTTTACATATA
35827560 TTTTACATATA
1 TTTTACATATA
35827571 TT
1 TT
35827573 AATAAATTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 9 0.25
10 8 0.22
11 19 0.53
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTTACATATA
Found at i:35827551 original size:21 final size:22
Alignment explanation
Indices: 35827525--35827571 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
35827515 TTGTTTTTAC
35827525 ATATATTTTACATATATTA-AT
1 ATATATTTTACATATATTACAT
*
35827546 ATATATTTTACATATTTTACAT
1 ATATATTTTACATATATTACAT
35827568 ATAT
1 ATAT
35827572 TAATAAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.53
Consensus pattern (22 bp):
ATATATTTTACATATATTACAT
Found at i:35827557 original size:32 final size:34
Alignment explanation
Indices: 35827519--35827595 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 34
35827509 GAAAAGTTGT
*
35827519 TTTTACATATATTTTACATATATTAATATA-T-A
1 TTTTACATATATTTTACATATATTAATAAATTGA
*
35827551 TTTTAC--ATATTTTACATATATTAATAAATTGT
1 TTTTACATATATTTTACATATATTAATAAATTGA
35827583 TTTTACATATATT
1 TTTTACATATATT
35827596 GCAATGATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
30 21 0.54
31 1 0.03
32 12 0.31
34 5 0.13
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (34 bp):
TTTTACATATATTTTACATATATTAATAAATTGA
Found at i:35827562 original size:9 final size:9
Alignment explanation
Indices: 35827527--35827569 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
35827517 GTTTTTACAT
35827527 ATATTTTAC
1 ATATTTTAC
*
35827536 ATATATTAATAT
1 ATAT-TT--TAC
35827548 ATATTTTAC
1 ATATTTTAC
35827557 ATATTTTAC
1 ATATTTTAC
35827566 ATAT
1 ATAT
35827570 ATTAATAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
9 19 0.66
10 2 0.07
11 2 0.07
12 6 0.21
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (9 bp):
ATATTTTAC
Found at i:35827878 original size:71 final size:72
Alignment explanation
Indices: 35827762--35827904 Score: 261
Period size: 71 Copynumber: 2.0 Consensus size: 72
35827752 ATAATAATAT
*
35827762 TATCCAAATACATAATTAATGGTACACCACATAGTAACAACATTGT-CTAGTGCATAATATTACA
1 TATCCAAATACATAATTAATGGTACACCACATAGTAACAACATTGTCCAAGTGCATAATATTACA
35827826 CCACATA
66 CCACATA
*
35827833 TATCCAAATACATAATTAATGGTACACCACATAGTAAGAACATTGTCCAAGTGCATAATATTACA
1 TATCCAAATACATAATTAATGGTACACCACATAGTAACAACATTGTCCAAGTGCATAATATTACA
35827898 CCACATA
66 CCACATA
35827905 AATGTATCAA
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
71 45 0.65
72 24 0.35
ACGTcount: A:0.43, C:0.21, G:0.09, T:0.27
Consensus pattern (72 bp):
TATCCAAATACATAATTAATGGTACACCACATAGTAACAACATTGTCCAAGTGCATAATATTACA
CCACATA
Found at i:35828890 original size:35 final size:36
Alignment explanation
Indices: 35828844--35828912 Score: 131
Period size: 35 Copynumber: 1.9 Consensus size: 36
35828834 ATTCAACCAT
35828844 TTCAATATCCAACAAGCTTAAAACATAAT-AATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATCAATAAA
35828879 TTCAATATCCAACAAGCTTAAAACATAATCAATA
1 TTCAATATCCAACAAGCTTAAAACATAATCAATA
35828913 TCTAACAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 29 0.88
36 4 0.12
ACGTcount: A:0.52, C:0.19, G:0.03, T:0.26
Consensus pattern (36 bp):
TTCAATATCCAACAAGCTTAAAACATAATCAATAAA
Found at i:35828910 original size:27 final size:28
Alignment explanation
Indices: 35828880--35828955 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 28
35828870 AATAATAAAT
*
35828880 TCAATATCCAACAAGCTT-AAAACATA-A
1 TCAATATCCAACAA-ATTCAAAACATATA
* *
35828907 TCAATATCTAACAAATTCAAGACATATA
1 TCAATATCCAACAAATTCAAAACATATA
*
35828935 TCAAAATCCAACAAATT-AAAA
1 TCAATATCCAACAAATTCAAAA
35828956 TTTCAATATC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.05
27 23 0.56
28 16 0.39
ACGTcount: A:0.54, C:0.20, G:0.03, T:0.24
Consensus pattern (28 bp):
TCAATATCCAACAAATTCAAAACATATA
Found at i:35835610 original size:42 final size:42
Alignment explanation
Indices: 35835558--35835646 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
35835548 GTCCCCTCCC
* * *
35835558 AAGG-CTAGGTAGTCTTGTTGTGAGTCTTGGGCTTGGGAGGG
1 AAGGACTAGGTAGTCTTGTGGTGAGTCTTGGGCATGGGAAGG
*
35835599 AAGGACTAGGTAGTCTTGTGGTGAGTTTTGGGCATGGGAAGG
1 AAGGACTAGGTAGTCTTGTGGTGAGTCTTGGGCATGGGAAGG
*
35835641 ATGGAC
1 AAGGAC
35835647 CAAGGCTAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 4 0.10
42 38 0.90
ACGTcount: A:0.19, C:0.09, G:0.43, T:0.29
Consensus pattern (42 bp):
AAGGACTAGGTAGTCTTGTGGTGAGTCTTGGGCATGGGAAGG
Found at i:35852378 original size:19 final size:20
Alignment explanation
Indices: 35852351--35852395 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
35852341 TGTTAAAATT
* *
35852351 AAATTAATTAA-CTATATGC
1 AAATGAATTAACCTAAATGC
35852370 AAATGAATTAACCTAAATGC
1 AAATGAATTAACCTAAATGC
35852390 -AATGAA
1 AAATGAA
35852396 ATGGTTTAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.51, C:0.11, G:0.09, T:0.29
Consensus pattern (20 bp):
AAATGAATTAACCTAAATGC
Found at i:35854086 original size:14 final size:14
Alignment explanation
Indices: 35854067--35854096 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
35854057 TTGGATTGTA
*
35854067 AAGATTAGTACTGT
1 AAGATTAGAACTGT
35854081 AAGATTAGAACTGT
1 AAGATTAGAACTGT
35854095 AA
1 AA
35854097 TGTTTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (14 bp):
AAGATTAGAACTGT
Found at i:35854404 original size:47 final size:47
Alignment explanation
Indices: 35854351--35854445 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
35854341 AGTGTTAGAG
* *
35854351 AAAGTCTTTGAGGCTATTTAAAGAGAACTAGAGAGATGGTTCAAGGT
1 AAAGTCTTCGAGGCTATTTAAAGAGAACTAGAAAGATGGTTCAAGGT
35854398 AAAGTCTTCGAGGCTATTTAAAGAGAACTAGAAAGATGGTTCAAGGT
1 AAAGTCTTCGAGGCTATTTAAAGAGAACTAGAAAGATGGTTCAAGGT
35854445 A
1 A
35854446 GGTGTGCGGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.26
Consensus pattern (47 bp):
AAAGTCTTCGAGGCTATTTAAAGAGAACTAGAAAGATGGTTCAAGGT
Found at i:35859396 original size:15 final size:16
Alignment explanation
Indices: 35859369--35859408 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
35859359 GGTTTAGATA
*
35859369 CTTTT-TTTATATTTTT
1 CTTTTCTTTAT-TTTTC
35859385 CTTTTCTTTATTTTTC
1 CTTTTCTTTATTTTTC
35859401 CTTTTCTT
1 CTTTTCTT
35859409 GTATATACTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (16 bp):
CTTTTCTTTATTTTTC
Found at i:35864722 original size:13 final size:14
Alignment explanation
Indices: 35864704--35864732 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
35864694 AGTAGTGATA
35864704 GCTTACAT-AGTTC
1 GCTTACATGAGTTC
35864717 GCTTACATGAGTTC
1 GCTTACATGAGTTC
35864731 GC
1 GC
35864733 GTCATCATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (14 bp):
GCTTACATGAGTTC
Found at i:35869634 original size:50 final size:50
Alignment explanation
Indices: 35869519--35869711 Score: 287
Period size: 50 Copynumber: 3.8 Consensus size: 50
35869509 GATAATAACA
* ** *
35869519 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* **
35869570 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
35869620 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
35869670 TGCCAATGCCATGTCCTAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
35869712 TTACCCAAAT
Statistics
Matches: 127, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 94 0.74
51 33 0.26
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:35869829 original size:13 final size:13
Alignment explanation
Indices: 35869811--35869835 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
35869801 GATAATCACC
35869811 AAATAAATTCATG
1 AAATAAATTCATG
35869824 AAATAAATTCAT
1 AAATAAATTCAT
35869836 AGTTGTTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATAAATTCATG
Found at i:35877335 original size:18 final size:17
Alignment explanation
Indices: 35877309--35877344 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
35877299 TTTGGTTATA
35877309 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
35877327 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
35877344 T
1 T
35877345 CATTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:35882787 original size:41 final size:41
Alignment explanation
Indices: 35882730--35882838 Score: 173
Period size: 41 Copynumber: 2.6 Consensus size: 41
35882720 GACTATACGT
*
35882730 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAAGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAAGCTATAAAC
* *
35882771 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAAGCTATAAAC
*
35882812 CTAGCAAGCTAAGTGCCGGTGAATCTG
1 CTAGCAGGCTAAGTGCCGGTG-ATCTG
35882839 TTAAATTAAG
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
41 58 0.92
42 5 0.08
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAAGCTATAAAC
Found at i:35884407 original size:58 final size:58
Alignment explanation
Indices: 35884345--35884483 Score: 172
Period size: 58 Copynumber: 2.4 Consensus size: 58
35884335 TTAATTCATA
*
35884345 TAATAATAATTTTATTAAGAATTTTATTAAATTATATATCA-TTTTATTAAATAATATT
1 TAATAATAATTTTATTAA-AATTTGATTAAATTATATATCATTTTTATTAAATAATATT
* * * * * * * *
35884403 TAATAATAATTATGTTAAAATATGGTTAAATTATTTATTATTTTTATTAAATTATTTT
1 TAATAATAATTTTATTAAAATTTGATTAAATTATATATCATTTTTATTAAATAATATT
*
35884461 TAATAATAATCTTATTAAAATTT
1 TAATAATAATTTTATTAAAATTT
35884484 AATAACAATA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
57 17 0.25
58 50 0.75
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (58 bp):
TAATAATAATTTTATTAAAATTTGATTAAATTATATATCATTTTTATTAAATAATATT
Found at i:35884665 original size:46 final size:44
Alignment explanation
Indices: 35884579--35884667 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
35884569 AACATCGTTC
*
35884579 CATTCAACCAAACACAAGAATACTATTACAGTTCTATTCCATTT
1 CATTCAACCAAACACAAGAATACGATTACAGTTCTATTCCATTT
*
35884623 CATTCAACCAAACA-ATTGAATTACGGATTACAGCTT-TATTCCATT
1 CATTCAACCAAACACA-AGAA-TAC-GATTACAG-TTCTATTCCATT
35884668 ACAGCTCTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
43 1 0.03
44 17 0.44
45 3 0.08
46 16 0.41
47 2 0.05
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.33
Consensus pattern (44 bp):
CATTCAACCAAACACAAGAATACGATTACAGTTCTATTCCATTT
Found at i:35884670 original size:16 final size:16
Alignment explanation
Indices: 35884649--35884702 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
35884639 TGAATTACGG
*
35884649 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
*
35884665 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
35884681 ATTACAGCTCTATTTC
1 ATTACAGCTCTATTCC
35884697 ATTACA
1 ATTACA
35884703 ATAAACTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.41
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:35890888 original size:7 final size:7
Alignment explanation
Indices: 35890876--35890902 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
35890866 CACATCGCCA
35890876 GCCACCC
1 GCCACCC
35890883 GCCACCC
1 GCCACCC
35890890 GCCACCC
1 GCCACCC
35890897 GCCACC
1 GCCACC
35890903 TCCCTCTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.70, G:0.15, T:0.00
Consensus pattern (7 bp):
GCCACCC
Found at i:35893750 original size:21 final size:20
Alignment explanation
Indices: 35893724--35893811 Score: 67
Period size: 19 Copynumber: 4.5 Consensus size: 20
35893714 TTAAATTTTT
35893724 ATTAAAAAATATATATTAAAAA
1 ATTAAAAAATAT-TA-TAAAAA
35893746 A-TAAAAAA-ATTATAAAAA
1 ATTAAAAAATATTATAAAAA
* * *
35893764 ATTATAAAA-ATTGTAAAAT
1 ATTAAAAAATATTATAAAAA
* * *
35893783 TTTATAAAA-ATCATAAAAA
1 ATTAAAAAATATTATAAAAA
*
35893802 ATTATAAAAT
1 ATTAAAAAAT
35893812 GTATCAAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
18 7 0.12
19 39 0.70
20 2 0.04
21 7 0.12
22 1 0.02
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.32
Consensus pattern (20 bp):
ATTAAAAAATATTATAAAAA
Found at i:35893762 original size:9 final size:9
Alignment explanation
Indices: 35893740--35893810 Score: 70
Period size: 9 Copynumber: 7.6 Consensus size: 9
35893730 AAATATATAT
*
35893740 TAAAAAATA
1 TAAAAATTA
*
35893749 AAAAAATTA
1 TAAAAATTA
35893758 TAAAAAATTA
1 T-AAAAATTA
*
35893768 TAAAAATTG
1 TAAAAATTA
*
35893777 TAAAATTTTA
1 TAAAA-ATTA
*
35893787 TAAAAATCA
1 TAAAAATTA
35893796 TAAAAAATTA
1 T-AAAAATTA
35893806 TAAAA
1 TAAAA
35893811 TGTATCAAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
9 26 0.52
10 24 0.48
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (9 bp):
TAAAAATTA
Found at i:35893762 original size:10 final size:10
Alignment explanation
Indices: 35893740--35893810 Score: 78
Period size: 10 Copynumber: 7.5 Consensus size: 10
35893730 AAATATATAT
35893740 TAAAAAA-TA
1 TAAAAAATTA
35893749 -AAAAAATTA
1 TAAAAAATTA
35893758 TAAAAAATTA
1 TAAAAAATTA
*
35893768 T-AAAAATTG
1 TAAAAAATTA
**
35893777 TAAAATTTTA
1 TAAAAAATTA
*
35893787 T-AAAAATCA
1 TAAAAAATTA
35893796 TAAAAAATTA
1 TAAAAAATTA
35893806 TAAAA
1 TAAAA
35893811 TGTATCAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
8 6 0.12
9 16 0.32
10 28 0.56
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:35893787 original size:19 final size:19
Alignment explanation
Indices: 35893740--35893810 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 19
35893730 AAATATATAT
*
35893740 TAAAAAA-TAAAAAAATTA
1 TAAAAAATTATAAAAATTA
*
35893758 TAAAAAATTATAAAAATTG
1 TAAAAAATTATAAAAATTA
** *
35893777 TAAAATTTTATAAAAATCA
1 TAAAAAATTATAAAAATTA
35893796 TAAAAAATTATAAAA
1 TAAAAAATTATAAAA
35893811 TGTATCAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
18 7 0.16
19 37 0.84
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (19 bp):
TAAAAAATTATAAAAATTA
Found at i:35893931 original size:12 final size:12
Alignment explanation
Indices: 35893916--35893942 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
35893906 AAAAAATGAT
35893916 AAAAAATCAATA
1 AAAAAATCAATA
35893928 AAAAAATCAATA
1 AAAAAATCAATA
35893940 AAA
1 AAA
35893943 GTTATAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAAATCAATA
Found at i:35901890 original size:24 final size:24
Alignment explanation
Indices: 35901858--35901907 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
35901848 TTTGTCACAG
35901858 TGATTGTGGAAGTGACCACTTCCA
1 TGATTGTGGAAGTGACCACTTCCA
35901882 TGATTGTGGAAGTGACCACTTCCA
1 TGATTGTGGAAGTGACCACTTCCA
35901906 TG
1 TG
35901908 TGGCACTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (24 bp):
TGATTGTGGAAGTGACCACTTCCA
Found at i:35902214 original size:15 final size:15
Alignment explanation
Indices: 35902194--35902231 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
35902184 ATAAAAGTAA
35902194 AATTAAGTA-AATGTT
1 AATTAA-TATAATGTT
35902209 AATTAATATAATGTT
1 AATTAATATAATGTT
35902224 ATATTAAT
1 A-ATTAAT
35902232 GTGAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 2 0.10
15 13 0.62
16 6 0.29
ACGTcount: A:0.47, C:0.00, G:0.08, T:0.45
Consensus pattern (15 bp):
AATTAATATAATGTT
Found at i:35910134 original size:27 final size:27
Alignment explanation
Indices: 35910101--35910200 Score: 146
Period size: 27 Copynumber: 3.7 Consensus size: 27
35910091 CCTTGGTCAC
*
35910101 GCCAAAACGATTGGCGGCACCAAAGGT
1 GCCAAAACCATTGGCGGCACCAAAGGT
35910128 GCCAAAACCATTGGCGGCACCAAAGGT
1 GCCAAAACCATTGGCGGCACCAAAGGT
** *
35910155 GCCAAGGCCATTGGCGGCACCAATGGT
1 GCCAAAACCATTGGCGGCACCAAAGGT
**
35910182 GCCAAAGGCATTGGCGGCA
1 GCCAAAACCATTGGCGGCA
35910201 TTACTCGTGT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 67 1.00
ACGTcount: A:0.29, C:0.28, G:0.31, T:0.12
Consensus pattern (27 bp):
GCCAAAACCATTGGCGGCACCAAAGGT
Found at i:35910301 original size:11 final size:11
Alignment explanation
Indices: 35910285--35910324 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
35910275 GGTGCTGCGG
35910285 AAAAGAAGAGA
1 AAAAGAAGAGA
35910296 AAAAG-AGAGA
1 AAAAGAAGAGA
*
35910306 AAGAGAAGAGA
1 AAAAGAAGAGA
35910317 AAAAGAAG
1 AAAAGAAG
35910325 GTATTTTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
AAAAGAAGAGA
Found at i:35910314 original size:21 final size:20
Alignment explanation
Indices: 35910284--35910322 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
35910274 AGGTGCTGCG
35910284 GAAAAGAAGAGAAAAAGAGA
1 GAAAAGAAGAGAAAAAGAGA
35910304 GAAAGAGAAGAGAAAAAGA
1 GAAA-AGAAGAGAAAAAGA
35910323 AGGTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (20 bp):
GAAAAGAAGAGAAAAAGAGA
Found at i:35916736 original size:4 final size:4
Alignment explanation
Indices: 35916722--35916904 Score: 76
Period size: 4 Copynumber: 44.5 Consensus size: 4
35916712 AAAAATATTA
* * * **
35916722 TCTT T-TT TCTT TCTT TTTT TCCT TCCT TCCC TC-T TC-T TC-T TCTT
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT
* * *
35916766 TTTT TCTCT T-TT CCTT TCATTT TCTT TCCT TCTT TCTT T-TT T-TT TCTT
1 TCTT TCT-T TCTT TCTT TC--TT TCTT TCTT TCTT TCTT TCTT TCTT TCTT
* *
35916814 CTCCTT TCCTTT TCTTT TCTT TCTT TTTT TCTCT TC-T CCTT TCCTTT TCTT
1 -T-CTT T-C-TT TC-TT TCTT TCTT TCTT TCT-T TCTT TCTT T-C-TT TCTT
* * *
35916865 TCCTCT CCTT CCTT CCTT TCTT TCTT TCTT TCTT TCTT TC
1 T-CT-T TCTT TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC
35916905 CCTCTCCTTC
Statistics
Matches: 146, Mismatches: 17, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
3 20 0.14
4 91 0.62
5 21 0.14
6 14 0.10
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.69
Consensus pattern (4 bp):
TCTT
Found at i:35916762 original size:30 final size:30
Alignment explanation
Indices: 35916728--35916915 Score: 82
Period size: 30 Copynumber: 6.1 Consensus size: 30
35916718 ATTATCTTTT
35916728 TTCTTTCTTTTTTTCCTTCCTTCCCTCTTC
1 TTCTTTCTTTTTTTCCTTCCTTCCCTCTTC
* * *
35916758 TTC-TTCTTTTTTTCTCTTTTCCTTTCATTTTC
1 TTCTTTCTTTTTTTC-C--TTCCTTCCCTCTTC
* ** *
35916790 TTTCCTTCTTTCTTTTTTTTTCTTCTCCT-TTC
1 -TTCTTTCTTT-TTTTCCTTCCTTC-CCTCTTC
* * **
35916822 CT-TTTCTTTTCTTT-CTT-TTTTTCTCTTC
1 TTCTTTCTTTT-TTTCCTTCCTTCCCTCTTC
* * *
35916850 TCCTTTCCTTTTCTTTCCTCTCCTTCCTTCCT-
1 TTCTTT-CTTTT-TTTCCT-TCCTTCCCTCTTC
* * * *
35916882 TTCTTTCTTTCTTTCTTTCTTTCCCTCTCC
1 TTCTTTCTTTTTTTCCTTCCTTCCCTCTTC
35916912 TTCT
1 TTCT
35916916 GCCCCCCACC
Statistics
Matches: 115, Mismatches: 28, Indels: 30
0.66 0.16 0.17
Matches are distributed among these distances:
27 2 0.02
28 5 0.04
29 25 0.22
30 31 0.27
31 7 0.06
32 25 0.22
33 10 0.09
34 6 0.05
35 4 0.03
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (30 bp):
TTCTTTCTTTTTTTCCTTCCTTCCCTCTTC
Found at i:35916790 original size:26 final size:27
Alignment explanation
Indices: 35916731--35916792 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
35916721 ATCTTTTTTC
35916731 TTTCTTTTTTTCCTTCCTTCCCTCTTCT
1 TTTCTTTTTTTCCTT-CTTCCCTCTTCT
35916759 TCTTCTTTTTTTCTCTT-TT-CCT-TTCAT
1 T-TTCTTTTTTTC-CTTCTTCCCTCTTC-T
35916786 TTTCTTT
1 TTTCTTT
35916793 CCTTCTTTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
26 9 0.29
27 5 0.16
28 3 0.10
29 11 0.35
30 3 0.10
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (27 bp):
TTTCTTTTTTTCCTTCTTCCCTCTTCT
Found at i:35916823 original size:5 final size:5
Alignment explanation
Indices: 35916775--35916905 Score: 61
Period size: 5 Copynumber: 28.0 Consensus size: 5
35916765 TTTTTTCTCT
* * ** *
35916775 TTTCC TTTCA TTTTC TTTCC -TT-C TTT-C TTTTT TTTTC TTCTCC TTTCC
1 TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TT-TCC TTTCC
* * * * *
35916823 TTTTC TTTTC TTT-C TTT-T TTTCTC TTCTCC TTTCC TTTTC TTTCC TCTCC
1 TTTCC TTTCC TTTCC TTTCC TTTC-C TT-TCC TTTCC TTTCC TTTCC TTTCC
35916873 -TTCC -TTCC TTT-C TTT-C TTT-C TTT-C TTT-C TTTCC
1 TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC
35916906 CTCTCCTTCT
Statistics
Matches: 104, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
3 1 0.01
4 42 0.40
5 50 0.48
6 9 0.09
7 2 0.02
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (5 bp):
TTTCC
Found at i:35916832 original size:43 final size:44
Alignment explanation
Indices: 35916755--35916850 Score: 119
Period size: 43 Copynumber: 2.2 Consensus size: 44
35916745 TCCTTCCCTC
*
35916755 TTCTTCTTCTTTTTTTCTCTTTTCCTTTCATTTTCTTTCCTTCT
1 TTCTTCTTCTTTTTTTCTCCTTTCCTTTCATTTTCTTTCCTTCT
* *
35916799 TTCTT-TT-TTTTTCTTCTCCTTTCCTTTTC-TTTTCTTTCTTTTT
1 TTCTTCTTCTTTTT-TTCTCCTTTCC-TTTCATTTTCTTTCCTTCT
35916842 TTC-TCTTCT
1 TTCTTCTTCT
35916851 CCTTTCCTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
42 6 0.13
43 29 0.64
44 10 0.22
ACGTcount: A:0.01, C:0.26, G:0.00, T:0.73
Consensus pattern (44 bp):
TTCTTCTTCTTTTTTTCTCCTTTCCTTTCATTTTCTTTCCTTCT
Found at i:35916841 original size:35 final size:35
Alignment explanation
Indices: 35916726--35916865 Score: 166
Period size: 35 Copynumber: 4.1 Consensus size: 35
35916716 ATATTATCTT
* *
35916726 TTTTCTTTCTTTTTTTC-C-T-TCCTTCCCTCTTC
1 TTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTC
* *
35916758 --TTC-TTCTTTTTTTCTCTTTTCCTTTCATTTTC
1 TTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTC
*
35916790 TTTCCTTCTTTCTTTTTTTTTCTTCTCCTTTCCTTTTC
1 -TT--TTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTC
35916828 TTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTC
1 TTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTC
35916863 TTT
1 TTT
35916866 CCTCTCCTTC
Statistics
Matches: 92, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
29 11 0.12
30 4 0.04
31 1 0.01
32 10 0.11
35 35 0.38
37 5 0.05
38 26 0.28
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.71
Consensus pattern (35 bp):
TTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTC
Found at i:35916885 original size:73 final size:69
Alignment explanation
Indices: 35916753--35916904 Score: 175
Period size: 73 Copynumber: 2.2 Consensus size: 69
35916743 CTTCCTTCCC
* * * **
35916753 TCTTCTTC-TTCTTTTTTTCTCTTTTCCTTTCATTTTCTTTCCTTCTTTCTTTTTTTTTCTTCTC
1 TCTT-TTCTTTCTTTTTTTCTCTTCTCCTTTCATTTTCTTTCCTTCCTTCTCTTCCTTTCTT-T-
35916817 CTTTCCTTT
63 CTTT-C-TT
*
35916826 TCTTTTCTTTCTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTCTCCTTC-CTTCCTTTCTTTCT
1 TCTTTTCTTTCTTTTTTTCTCTTCTCCTTTCATTTTCTTTCCT-TCCTTCTCTTCCTTTCTTTCT
35916890 TTCTT
65 TTCTT
35916895 TC-TTTCTTTC
1 TCTTTTCTTTC
35916905 CCTCTCCTTC
Statistics
Matches: 71, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
68 8 0.11
69 4 0.06
70 1 0.01
71 4 0.06
72 4 0.06
73 45 0.63
74 5 0.07
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (69 bp):
TCTTTTCTTTCTTTTTTTCTCTTCTCCTTTCATTTTCTTTCCTTCCTTCTCTTCCTTTCTTTCTT
TCTT
Found at i:35917038 original size:19 final size:19
Alignment explanation
Indices: 35917014--35917051 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
35917004 CAGTTTTTTT
*
35917014 TATATATTTTGGTAAATAA
1 TATATATATTGGTAAATAA
35917033 TATATATATTGGTAAATAA
1 TATATATATTGGTAAATAA
35917052 AAAAAGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (19 bp):
TATATATATTGGTAAATAA
Found at i:35928705 original size:27 final size:27
Alignment explanation
Indices: 35928627--35928765 Score: 190
Period size: 27 Copynumber: 5.2 Consensus size: 27
35928617 AGGTCGATAT
35928627 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* * *
35928654 ATAACCGAAATA-TCCCATAGAGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* *
35928680 ATGACCGAAGTATCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
35928707 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
* ** *
35928734 ATGATCGAAATACCCTTATAGGATAAA
1 ATGACCGAAATACCCCCATAGGGTAAA
35928761 ATGAC
1 ATGAC
35928766 TGTTATAGCC
Statistics
Matches: 97, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 22 0.23
27 75 0.77
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAGGGTAAA
Found at i:35928707 original size:53 final size:54
Alignment explanation
Indices: 35928627--35928762 Score: 184
Period size: 53 Copynumber: 2.5 Consensus size: 54
35928617 AGGTCGATAT
*
35928627 ATGACCGAAATACCCCCATAGGGTAAAATAACCGAAATA-TCCCATAGAGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCCCATAGAGTAAA
* * * *
35928680 ATGACCGAAGTATCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCCCATAGAGTAAA
* ** *
35928734 ATGATCGAAATACCCTTATAGGATAAAAT
1 ATGACCGAAATACCCCCATAGGGTAAAAT
35928763 GACTGTTATA
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
53 36 0.51
54 35 0.49
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.19
Consensus pattern (54 bp):
ATGACCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCCCATAGAGTAAA
Found at i:35929026 original size:26 final size:26
Alignment explanation
Indices: 35928972--35929026 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
35928962 TTTGCAACAT
* *
35928972 ATACTGTTACTAGCAGCTTTGCTGCG
1 ATACTATTACTAGCAGCTTTGCTACG
*
35928998 ATACTATTACTAGCAGCTTTGCTATG
1 ATACTATTACTAGCAGCTTTGCTACG
35929024 ATA
1 ATA
35929027 TTGGTGTGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.36
Consensus pattern (26 bp):
ATACTATTACTAGCAGCTTTGCTACG
Found at i:35929177 original size:28 final size:28
Alignment explanation
Indices: 35929137--35929238 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
35929127 GCATTTTTAC
* *
35929137 TGTATTGGGCTAAGGCCTACACTGATTA
1 TGTATTAGGCTAAGGCCCACACTGATTA
*
35929165 TGTATTAGGCTAAGGCCCACACTGATTC
1 TGTATTAGGCTAAGGCCCACACTGATTA
* * *
35929193 TATATTAGGCTAAGACCCATACT-ATTA
1 TGTATTAGGCTAAGGCCCACACTGATTA
*
35929220 CTGTATTGGGCTAAGGCCC
1 -TGTATTAGGCTAAGGCCC
35929239 TATAATGGCC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
27 3 0.05
28 60 0.95
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (28 bp):
TGTATTAGGCTAAGGCCCACACTGATTA
Found at i:35931057 original size:11 final size:11
Alignment explanation
Indices: 35931038--35931069 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
35931028 TGTTTGTTAT
*
35931038 TGATATGAATA
1 TGATTTGAATA
35931049 TGATTTGAATA
1 TGATTTGAATA
35931060 TGATTTGAAT
1 TGATTTGAAT
35931070 GTTCATTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (11 bp):
TGATTTGAATA
Found at i:35932411 original size:33 final size:34
Alignment explanation
Indices: 35932352--35932430 Score: 91
Period size: 33 Copynumber: 2.5 Consensus size: 34
35932342 GGGGTATTAT
35932352 AGGCCCACACTGTTACTGT-A-T---T-GGGCTA
1 AGGCCCACACTGTTACTGTCACTGAATAGGGCTA
*
35932380 AGGCCCACACTG-TACTGTCACTGAATAGGGCTT
1 AGGCCCACACTGTTACTGTCACTGAATAGGGCTA
*
35932413 AGGCCCAGACTGTTACTG
1 AGGCCCACACTGTTACTG
35932431 CATGCTATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
27 6 0.14
28 13 0.31
29 1 0.02
32 1 0.02
33 16 0.38
34 5 0.12
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (34 bp):
AGGCCCACACTGTTACTGTCACTGAATAGGGCTA
Found at i:35934828 original size:78 final size:78
Alignment explanation
Indices: 35934699--35934855 Score: 260
Period size: 78 Copynumber: 2.0 Consensus size: 78
35934689 ATTCATGGCT
* * * *
35934699 AATCACATCTTTATAAGTGTGAATTATTGTAATTTAGGCAAATGATTACAACTCTCAATAGAATG
1 AATCACATCTTTATAAGTGCGAATCATTGTAATTTAGACAAATGATTACAACTCTCAATAGAAGG
35934764 AGCTAATCAAAGG
66 AGCTAATCAAAGG
* *
35934777 AATCACATCTTTATAAGTGCGAATCATTGTAGTTTAGACGAATGATTACAACTCTCAATAGAAGG
1 AATCACATCTTTATAAGTGCGAATCATTGTAATTTAGACAAATGATTACAACTCTCAATAGAAGG
35934842 AGCTAATCAAAGG
66 AGCTAATCAAAGG
35934855 A
1 A
35934856 GAGGATTCAT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 73 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (78 bp):
AATCACATCTTTATAAGTGCGAATCATTGTAATTTAGACAAATGATTACAACTCTCAATAGAAGG
AGCTAATCAAAGG
Found at i:35945446 original size:3 final size:3
Alignment explanation
Indices: 35945438--35945485 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
35945428 AAATAGGCAT
*
35945438 TGA TGA TGA TGA TGA TGG TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
35945486 AGGAGAGGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.31, C:0.00, G:0.35, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:35966071 original size:17 final size:17
Alignment explanation
Indices: 35966051--35966083 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
35966041 TTTAAAATGA
35966051 TTATAAATTTTTTATTG
1 TTATAAATTTTTTATTG
*
35966068 TTATAATTTTTTTATT
1 TTATAAATTTTTTATT
35966084 TAAGTAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTATAAATTTTTTATTG
Found at i:35973634 original size:37 final size:37
Alignment explanation
Indices: 35973593--35973666 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
35973583 ACCTATGAAT
* *
35973593 CGATCTCACTTAAATAGTGAATTAT-AAAAAATAAATC
1 CGATCTCACTCAAATACTGAATTATCAAAAAA-AAATC
**
35973630 CGATCTCACTCATTTACTGAATTATCAAAAAAAAATC
1 CGATCTCACTCAAATACTGAATTATCAAAAAAAAATC
35973667 ATTTTATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 26 0.81
38 6 0.19
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.30
Consensus pattern (37 bp):
CGATCTCACTCAAATACTGAATTATCAAAAAAAAATC
Found at i:35975336 original size:18 final size:18
Alignment explanation
Indices: 35975313--35975349 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
35975303 ATTAAGTTAA
35975313 ACCAATCCTGATTTAATT
1 ACCAATCCTGATTTAATT
35975331 ACCAATCCTGATTTAATT
1 ACCAATCCTGATTTAATT
35975349 A
1 A
35975350 AGTAAGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (18 bp):
ACCAATCCTGATTTAATT
Found at i:35983045 original size:69 final size:69
Alignment explanation
Indices: 35982963--35983101 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
35982953 ACATATTATG
* *
35982963 AAATTGGAAACGCTTTCTCCCTCATGCAATCTGAGCACAGCTTTCAGGGGTAGAACATTCATTCC
1 AAATTGGAAACGCTTTCTACCTCATGCAACCTGAGCACAGCTTTCAGGGGTAGAACATTCATTCC
35983028 TAAA
66 TAAA
35983032 AAATTGGAAACGCTTTCTACCTCATGCAACCTGAGCACAGCTTTCAGGGGTAGAACATTCATTCC
1 AAATTGGAAACGCTTTCTACCTCATGCAACCTGAGCACAGCTTTCAGGGGTAGAACATTCATTCC
35983097 TAAA
66 TAAA
35983101 A
1 A
35983102 TGATAAAAGC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (69 bp):
AAATTGGAAACGCTTTCTACCTCATGCAACCTGAGCACAGCTTTCAGGGGTAGAACATTCATTCC
TAAA
Found at i:35986755 original size:2 final size:2
Alignment explanation
Indices: 35986748--35986787 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
35986738 AACCAAAATT
*
35986748 TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
35986788 GAGAGAGAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:35988871 original size:20 final size:20
Alignment explanation
Indices: 35988846--35988886 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
35988836 AACAACTTGA
*
35988846 ATATTTTTACTTAA-ATATGT
1 ATATTTTT-CGTAACATATGT
35988866 ATATTTTTCGTAACATATGT
1 ATATTTTTCGTAACATATGT
35988886 A
1 A
35988887 ATTGATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.51
Consensus pattern (20 bp):
ATATTTTTCGTAACATATGT
Found at i:35990097 original size:19 final size:17
Alignment explanation
Indices: 35990073--35990116 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
35990063 CAATGCATCA
*
35990073 AATAATTATACATATTGCC
1 AATAATAATACA-ATT-CC
*
35990092 AATAATAATTCAATTCC
1 AATAATAATACAATTCC
35990109 AATAATAA
1 AATAATAA
35990117 AACACACACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 3 0.13
19 10 0.43
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.34
Consensus pattern (17 bp):
AATAATAATACAATTCC
Found at i:36003048 original size:5 final size:5
Alignment explanation
Indices: 36003038--36003066 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
36003028 TGCAAACTCT
36003038 ATCCC ATCCC ATCCC ATCCC ATCCC ATCC
1 ATCCC ATCCC ATCCC ATCCC ATCCC ATCC
36003067 AATTCATTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.59, G:0.00, T:0.21
Consensus pattern (5 bp):
ATCCC
Found at i:36007579 original size:22 final size:24
Alignment explanation
Indices: 36007554--36007604 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
36007544 TGGACCATCG
36007554 AATAATTTA-C-AAT-TAATATACA
1 AATAATTTATCAAATATAATATA-A
36007576 AATAA-TTATCAAATATAATATAA
1 AATAATTTATCAAATATAATATAA
36007599 AATAAT
1 AATAAT
36007605 CTTAAAGTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
21 3 0.12
22 6 0.24
23 9 0.36
24 7 0.28
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (24 bp):
AATAATTTATCAAATATAATATAA
Found at i:36009779 original size:14 final size:15
Alignment explanation
Indices: 36009740--36009781 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
36009730 TTTAAACATC
*
36009740 ATTATTATTAAATAT
1 ATTATAATTAAATAT
36009755 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
36009769 A-TATAATTTAATA
1 ATTATAATTAAATA
36009782 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:36009850 original size:89 final size:88
Alignment explanation
Indices: 36009760--36009975 Score: 253
Period size: 89 Copynumber: 2.4 Consensus size: 88
36009750 AATATATTAT
*
36009760 AATTAAAATATATAATTTAATAAAAT-TCTTAATAATT-AATATTCTTATATGAATTTACTCAAA
1 AATTAAAATA-ATAA-TT-ATAAAATATATT-ATAATTAAATATTCTTATATGAATTTACTCAAA
*
36009823 TCATAATATATGATACTGTAAAATATA
62 TCATAATATATGATACTATAAAATATA
* * *
36009850 AATTAACATAATTATTATTAAATATATTATAATTAAAATATTCTTATATGAATTTACTCAAATCA
1 AATTAAAATAATAATTATAAAATATATTATAATT-AAATATTCTTATATGAATTTACTCAAATCA
*
36009915 TAATATATGATACTATAAAAGA-A
65 TAATATATGATACTATAAAATATA
* *
36009938 AATTTGAAATAATTAA-TATTAAATATACTT-TAATTAAA
1 AA-TTAAAATAA-TAATTATAAAATATA-TTATAATTAAA
36009976 ATATATGATT
Statistics
Matches: 111, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
87 12 0.11
88 11 0.10
89 75 0.68
90 13 0.12
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (88 bp):
AATTAAAATAATAATTATAAAATATATTATAATTAAATATTCTTATATGAATTTACTCAAATCAT
AATATATGATACTATAAAATATA
Found at i:36009878 original size:15 final size:15
Alignment explanation
Indices: 36009851--36009896 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
36009841 TAAAATATAA
36009851 ATTAACATA-ATTATT
1 ATTAA-ATATATTATT
*
36009866 ATTAAATATATTATA
1 ATTAAATATATTATT
*
36009881 ATTAAA-ATATTCTT
1 ATTAAATATATTATT
36009895 AT
1 AT
36009897 ATGAATTTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTAAATATATTATT
Found at i:36009976 original size:89 final size:89
Alignment explanation
Indices: 36009797--36009979 Score: 291
Period size: 89 Copynumber: 2.1 Consensus size: 89
36009787 CTTAATAATT
* *
36009797 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATTAACATAAT
1 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTAACATAAT
*
36009862 TATTATTAAATATATTATAATTAA
66 TAATATTAAATATATTATAATTAA
36009886 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATTTGAA-ATA
1 AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAA-TT-AACATA
36009949 ATTAATATTAAATATACTT-TAATTAA
64 ATTAATATTAAATATA-TTATAATTAA
36009975 AATAT
1 AATAT
36009980 ATGATTTAAT
Statistics
Matches: 88, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
88 3 0.03
89 81 0.92
90 4 0.05
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (89 bp):
AATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTAACATAAT
TAATATTAAATATATTATAATTAA
Found at i:36010095 original size:27 final size:26
Alignment explanation
Indices: 36010039--36010095 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
36010029 GAATTTGTAT
*
36010039 AATTTAAAATAATAATTATTACATAT
1 AATTTAAAATAATAATTATTACATAA
*
36010065 AATTTAATAATAAT-ATTAATTTCATAA
1 AATTTAA-AATAATAATT-ATTACATAA
36010092 AATT
1 AATT
36010096 CTTGATAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (26 bp):
AATTTAAAATAATAATTATTACATAA
Found at i:36010106 original size:90 final size:91
Alignment explanation
Indices: 36010011--36010217 Score: 276
Period size: 90 Copynumber: 2.3 Consensus size: 91
36010001 TAATTATAAC
* * * *
36010011 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATTTAATAA
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTTAATAA
*
36010075 TAATAT-TAATTTCATAAAATTCTTGA
65 TAATATATAATTTCATAAAATTCTTAA
* * *
36010101 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAGT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
36010166 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAATTCTTAA
*
36010192 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
36010218 CTAAAATCAA
Statistics
Matches: 104, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
90 58 0.56
91 26 0.25
92 19 0.18
93 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAATTCTTAA
Found at i:36015259 original size:22 final size:22
Alignment explanation
Indices: 36015206--36015260 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
36015196 AAGCAGATGG
36015206 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAATAAATTATAT
* * *
36015228 ATCCACTGCAAA-CAATTGTAT
1 AGCCACTGCAAATAAATTATAT
36015249 AGCCACATGCAA
1 AGCCAC-TGCAA
36015261 TGGGGGAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 12 0.43
22 16 0.57
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.24
Consensus pattern (22 bp):
AGCCACTGCAAATAAATTATAT
Found at i:36020434 original size:11 final size:12
Alignment explanation
Indices: 36020420--36020449 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
36020410 ATAAATCATA
36020420 AAAAAATTA-TT
1 AAAAAATTAGTT
36020431 AAAAAATTAGTT
1 AAAAAATTAGTT
36020443 AAAAAAT
1 AAAAAAT
36020450 AAAAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 9 0.50
12 9 0.50
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (12 bp):
AAAAAATTAGTT
Found at i:36024740 original size:25 final size:26
Alignment explanation
Indices: 36024697--36024760 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 26
36024687 ATTTTACTCT
*
36024697 AGTAAAATTATGACGATTTTACCCCC
1 AGTAAAATTTTGACGATTTTACCCCC
* *
36024723 AGTAAAATTTTGA-TATTTTACTCCC
1 AGTAAAATTTTGACGATTTTACCCCC
*
36024748 -GATAAAGTTTTGA
1 AG-TAAAATTTTGA
36024761 GAAAATTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 1 0.03
25 20 0.61
26 12 0.36
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (26 bp):
AGTAAAATTTTGACGATTTTACCCCC
Found at i:36028477 original size:18 final size:17
Alignment explanation
Indices: 36028426--36028477 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
36028416 AAGCTTCCGC
*
36028426 AATAAAAAATGTTTTGA
1 AATAAATAATGTTTTGA
* * *
36028443 AATTGAATAACGATTTGTA
1 AA-TAAATAATGTTTTG-A
36028462 AATAAATAATGTTTTG
1 AATAAATAATGTTTTG
36028478 GAAACGAACG
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
17 2 0.08
18 21 0.81
19 3 0.12
ACGTcount: A:0.46, C:0.02, G:0.13, T:0.38
Consensus pattern (17 bp):
AATAAATAATGTTTTGA
Found at i:36033122 original size:6 final size:6
Alignment explanation
Indices: 36033106--36033136 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
36033096 GATATTACTT
36033106 AAAAT- AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AA
36033137 TTATAATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:36033450 original size:27 final size:28
Alignment explanation
Indices: 36033406--36033459 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
36033396 TTGAATTTTG
*
36033406 GAATATAATTAGTTTA-T-TTTGGGTTA
1 GAATATAATTAGTATATTATTTGGGTTA
*
36033432 GAATAATAATTTGTATATTATTTGGGTT
1 GAAT-ATAATTAGTATATTATTTGGGTT
36033460 TGGGCTTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 4 0.17
27 10 0.43
28 1 0.04
29 8 0.35
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (28 bp):
GAATATAATTAGTATATTATTTGGGTTA
Found at i:36040207 original size:13 final size:13
Alignment explanation
Indices: 36040189--36040218 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
36040179 ATTTTTTTAA
*
36040189 TATAAAATATTTC
1 TATAAAATATTAC
36040202 TATAAAATATTAC
1 TATAAAATATTAC
36040215 TATA
1 TATA
36040219 GTGGAATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (13 bp):
TATAAAATATTAC
Found at i:36040942 original size:26 final size:26
Alignment explanation
Indices: 36040886--36040945 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
36040876 ATAAAAATGA
***
36040886 TAAAAATAAAAATTCTTAAAATTTTC
1 TAAAAATAAAAAAAATTAAAATTTTC
*
36040912 AAAAAATAAAAAAAATTAAAATTTAT-
1 TAAAAATAAAAAAAATTAAAATTT-TC
36040938 TAAAAATA
1 TAAAAATA
36040946 GTTTACTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (26 bp):
TAAAAATAAAAAAAATTAAAATTTTC
Found at i:36044251 original size:15 final size:16
Alignment explanation
Indices: 36044225--36044258 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
36044215 CGAAAGGTAT
36044225 TAATTAGATTAATTAG
1 TAATTAGATTAATTAG
*
36044241 TAATT-GATTAATTGG
1 TAATTAGATTAATTAG
36044256 TAA
1 TAA
36044259 AATCTCTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (16 bp):
TAATTAGATTAATTAG
Found at i:36044767 original size:87 final size:87
Alignment explanation
Indices: 36044616--36044876 Score: 443
Period size: 87 Copynumber: 3.0 Consensus size: 87
36044606 GCACGCGAGG
36044616 CACGGTCAAGTTGTTGGCGTCGTTGCCAGGGAGGTTTAGGTGCTAATTTGATTTAGTAGTAAATT
1 CACGGTCAAGTTGTTGGCGTCGTTGCCAGGGAGGTTTAGGTGCTAATTTGATTTAGTAGTAAATT
36044681 GTGTAGGCTAGTTAAGATAAGT
66 GTGTAGGCTAGTTAAGATAAGT
* *
36044703 CACGATCAAGTTGTTGGCGTCGTTGCCAGGGTGGTTTAGGTGCTAATTTGATTTAGTAGTAAATT
1 CACGGTCAAGTTGTTGGCGTCGTTGCCAGGGAGGTTTAGGTGCTAATTTGATTTAGTAGTAAATT
36044768 GTGTAGGCTAGTTAAGATAAGT
66 GTGTAGGCTAGTTAAGATAAGT
* * * *
36044790 CACGGTCAAGTTGTTGGCGTCATTGTCAGGGAGGTTTATGTGCTAATTTGATTTAATAGTAAATT
1 CACGGTCAAGTTGTTGGCGTCGTTGCCAGGGAGGTTTAGGTGCTAATTTGATTTAGTAGTAAATT
*
36044855 GTGCT-GGCTAGTTAGGATAAGT
66 GTG-TAGGCTAGTTAAGATAAGT
36044877 AGTGAATTCG
Statistics
Matches: 164, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
87 163 0.99
88 1 0.01
ACGTcount: A:0.24, C:0.10, G:0.30, T:0.36
Consensus pattern (87 bp):
CACGGTCAAGTTGTTGGCGTCGTTGCCAGGGAGGTTTAGGTGCTAATTTGATTTAGTAGTAAATT
GTGTAGGCTAGTTAAGATAAGT
Found at i:36053306 original size:24 final size:24
Alignment explanation
Indices: 36053246--36053308 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
36053236 GTACATGTAT
*
36053246 GCTCATACGAGCGATAAACGGTAA
1 GCTCATACGAGCTATAAACGGTAA
* *
36053270 GCTC-TGCCAAGCTA-AAATCGGTAA
1 GCTCAT-ACGAGCTATAAA-CGGTAA
36053294 GCTCATACGAGCTAT
1 GCTCATACGAGCTAT
36053309 GGTGTGTCCG
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
23 4 0.13
24 25 0.83
25 1 0.03
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.21
Consensus pattern (24 bp):
GCTCATACGAGCTATAAACGGTAA
Found at i:36054204 original size:19 final size:18
Alignment explanation
Indices: 36054151--36054207 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 18
36054141 GTTCAGATAG
*
36054151 ATAATTCATCAAACATTTA
1 ATAATT-ATCAATCATTTA
* * *
36054170 AAAAATATCATTTCATTTCA
1 ATAATTATCA-ATCATTT-A
36054190 ATAATTATCAATCATTTA
1 ATAATTATCAATCATTTA
36054208 TAAGCAAACT
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
18 5 0.17
19 15 0.52
20 9 0.31
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (18 bp):
ATAATTATCAATCATTTA
Found at i:36066364 original size:18 final size:19
Alignment explanation
Indices: 36066329--36066369 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
36066319 ATATGTATGA
36066329 TTAAATCAAAATTAAAAAT
1 TTAAATCAAAATTAAAAAT
*
36066348 TTAAATCATAA-TAAAAAT
1 TTAAATCAAAATTAAAAAT
36066366 TTAA
1 TTAA
36066370 TGTATGTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
TTAAATCAAAATTAAAAAT
Found at i:36069210 original size:92 final size:92
Alignment explanation
Indices: 36069043--36069220 Score: 209
Period size: 92 Copynumber: 1.9 Consensus size: 92
36069033 TCTATTACTA
* * *
36069043 TATTTAAATATTTTATTAAATTTGTGTCACCCTTAATCAAATCACCAACTCATTAATGAATTTAC
1 TATTTAAATATTTTATTAAATTGGTGTCACCCTCAATCAAATCACCAACTCAGTAATGAATTTAC
*
36069108 TAAAAGCCCCTCATTTGTAATTGATTG
66 CAAAAGCCCCTCATTTGTAATTGATTG
* * * * *
36069135 TATTTAAATATTTTATTGAGTTGGTGTCACCCTCAA-CTAAATTA-CGAGTCCAGTAATGAATTT
1 TATTTAAATATTTTATTAAATTGGTGTCACCCTCAATC-AAATCACCAACT-CAGTAATGAATTT
* *
36069198 ACCATAAA-CCCCTCTTTTTTAAT
64 ACCA-AAAGCCCCTCATTTGTAAT
36069221 AATCAATAGA
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
91 4 0.06
92 65 0.90
93 3 0.04
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (92 bp):
TATTTAAATATTTTATTAAATTGGTGTCACCCTCAATCAAATCACCAACTCAGTAATGAATTTAC
CAAAAGCCCCTCATTTGTAATTGATTG
Found at i:36073729 original size:28 final size:29
Alignment explanation
Indices: 36073698--36073760 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 29
36073688 TTGATAAAAA
* *
36073698 AAAAATATCTACTT-CCTCCTAAAGTTTG
1 AAAAATACCCACTTACCTCCTAAAGTTTG
*
36073726 AAAAATACCCACTTATCTCCTAAAGTTTG
1 AAAAATACCCACTTACCTCCTAAAGTTTG
36073755 ATAAAA
1 A-AAAA
36073761 ATACATTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 12 0.40
29 14 0.47
30 4 0.13
ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32
Consensus pattern (29 bp):
AAAAATACCCACTTACCTCCTAAAGTTTG
Found at i:36074164 original size:15 final size:16
Alignment explanation
Indices: 36074117--36074169 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
36074107 TAAATTGTTT
36074117 TATATTTTAAA-ATAA
1 TATATTTTAAATATAA
36074132 TCATATTTTAAATATAA
1 T-ATATTTTAAATATAA
* *
36074149 TGTATTTTCAAT-TAA
1 TATATTTTAAATATAA
36074164 TATATT
1 TATATT
36074170 AAATAAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 9 0.27
16 19 0.58
17 5 0.15
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (16 bp):
TATATTTTAAATATAA
Found at i:36076847 original size:16 final size:16
Alignment explanation
Indices: 36076814--36076845 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
36076804 CCGCCGCTAC
36076814 AAACATTTATAATTTT
1 AAACATTTATAATTTT
36076830 AAACACTTTATAATTT
1 AAACA-TTTATAATTT
36076846 AACATTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (16 bp):
AAACATTTATAATTTT
Found at i:36077459 original size:13 final size:12
Alignment explanation
Indices: 36077441--36077470 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
36077431 TTTAGTCATA
36077441 TAATAAATTATAT
1 TAATAAATTAT-T
36077454 TAATAAATTATT
1 TAATAAATTATT
36077466 TAATA
1 TAATA
36077471 TGTCAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATAAATTATT
Found at i:36080638 original size:18 final size:17
Alignment explanation
Indices: 36080591--36080640 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 17
36080581 TTACTCCGGT
36080591 TTAAATAA-TTAATTTA
1 TTAAATAATTTAATTTA
*
36080607 TAAAAATAATTTTAATTATA
1 T-TAAATAA-TTTAATT-TA
36080627 TTAAATAATTTAAT
1 TTAAATAATTTAAT
36080641 ATTAATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 1 0.04
17 6 0.21
18 6 0.21
19 12 0.43
20 3 0.11
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAAATAATTTAATTTA
Found at i:36080648 original size:21 final size:20
Alignment explanation
Indices: 36080591--36080657 Score: 70
Period size: 21 Copynumber: 3.5 Consensus size: 20
36080581 TTACTCCGGT
36080591 TTAAATAA-TTAAT-TTATA
1 TTAAATAATTTAATATTATA
* *
36080609 -AAAATAATTTTA-ATTATA
1 TTAAATAATTTAATATTATA
36080627 TTAAATAATTTAATATTAATA
1 TTAAATAATTTAATATT-ATA
*
36080648 TTATATAATT
1 TTAAATAATT
36080658 ATCATAAATT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
17 6 0.15
18 8 0.21
19 10 0.26
20 3 0.08
21 12 0.31
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTAAATAATTTAATATTATA
Found at i:36095005 original size:12 final size:13
Alignment explanation
Indices: 36094990--36095051 Score: 60
Period size: 12 Copynumber: 5.1 Consensus size: 13
36094980 TACAATATTA
36094990 ATTAAATT-TAAT
1 ATTAAATTCTAAT
*
36095002 ATTAACTTCT-A-
1 ATTAAATTCTAAT
* *
36095013 ATTAATTTCTATT
1 ATTAAATTCTAAT
36095026 ATTAAATT-TAAT
1 ATTAAATTCTAAT
*
36095038 ATTAACTTCTAAT
1 ATTAAATTCTAAT
36095051 A
1 A
36095052 AATTTTTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
11 9 0.22
12 18 0.45
13 13 0.32
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTAAATTCTAAT
Found at i:36095033 original size:36 final size:36
Alignment explanation
Indices: 36094985--36095067 Score: 130
Period size: 36 Copynumber: 2.3 Consensus size: 36
36094975 TAAATTACAA
*
36094985 TATTAATTAAATTTAATATTAACTTCTAATTAATTTC
1 TATT-ATTAAATTTAATATTAACTTCTAATAAATTTC
*
36095022 TATTATTAAATTTAATATTAACTTCTAATAAATTTT
1 TATTATTAAATTTAATATTAACTTCTAATAAATTTC
*
36095058 TATAATTAAA
1 TATTATTAAA
36095068 CAATTTGGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
36 39 0.91
37 4 0.09
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (36 bp):
TATTATTAAATTTAATATTAACTTCTAATAAATTTC
Found at i:36095037 original size:23 final size:22
Alignment explanation
Indices: 36094978--36095037 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 22
36094968 TACTGTATAA
36094978 ATTACAATATTAATTAAATTTAAT
1 ATTA-AAT-TTAATTAAATTTAAT
* * *
36095002 ATTAACTTCTAATTAATTTCTATT
1 ATTAAATT-TAATTAAATT-TAAT
36095026 ATTAAATTTAAT
1 ATTAAATTTAAT
36095038 ATTAACTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
22 1 0.03
23 15 0.50
24 14 0.47
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTAAATTTAATTAAATTTAAT
Found at i:36097885 original size:38 final size:38
Alignment explanation
Indices: 36097843--36097927 Score: 111
Period size: 39 Copynumber: 2.2 Consensus size: 38
36097833 GCATCCAGCG
*
36097843 CTCATCGATATAA-CCGAAGTAAATTTAGCACCCAG-TGC
1 CTCATCGA-ACAACCCGAAGTAAATTTAGCACCC-GTTGC
*
36097881 CTCATCGAACAACGCCGAAGTAAATTTGGCACCCGTTGC
1 CTCATCGAACAAC-CCGAAGTAAATTTAGCACCCGTTGC
36097920 CTCATCGA
1 CTCATCGA
36097928 CTCATGGTCG
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
37 3 0.07
38 9 0.21
39 30 0.71
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (38 bp):
CTCATCGAACAACCCGAAGTAAATTTAGCACCCGTTGC
Found at i:36100305 original size:20 final size:20
Alignment explanation
Indices: 36100280--36100328 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
36100270 GAATCACTCA
*
36100280 ATTTACTTTCTTACCATTCC
1 ATTTACTTACTTACCATTCC
* *
36100300 ATTTACTTACTTTCCATTTC
1 ATTTACTTACTTACCATTCC
36100320 ATTTACTTA
1 ATTTACTTA
36100329 GCATAAACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTTACTTACTTACCATTCC
Found at i:36101121 original size:36 final size:36
Alignment explanation
Indices: 36101075--36101229 Score: 136
Period size: 35 Copynumber: 4.4 Consensus size: 36
36101065 ATCAGTCCAA
* *
36101075 CCAAAACACACCAGATGCTCACATGAGCCAATGCCT
1 CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
* * *
36101111 CCAAGACACACTAGATGATCACACGAGCCAATCCCT
1 CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
* * * * **
36101147 CCAAAACACACCA-ATGCTCATAAGAGCTAGTCCAA
1 CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
* * * *
36101182 CCGAAACACACCA-ATGCTC-CAAAGAGCTAGTCCCT
1 CCAAAACACACCAGATGCTCAC-ACGAGCCAATCCCT
*
36101217 CCGAAACACACCA
1 CCAAAACACACCA
36101230 AACAGAGAGT
Statistics
Matches: 100, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
35 58 0.58
36 42 0.42
ACGTcount: A:0.38, C:0.36, G:0.13, T:0.13
Consensus pattern (36 bp):
CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
Found at i:36101631 original size:18 final size:16
Alignment explanation
Indices: 36101610--36101643 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
36101600 AGTAAAACTA
36101610 ATTCATTTTATACAATTT
1 ATTCA-TTTAT-CAATTT
36101628 ATTCATTTATCAATTT
1 ATTCATTTATCAATTT
36101644 TTTATAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTCATTTATCAATTT
Found at i:36112632 original size:31 final size:31
Alignment explanation
Indices: 36112597--36112656 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
36112587 AGCCACTAAA
*
36112597 GTTTTAAATAATTTTTATTTTGGTCACTCAT
1 GTTTTAAATAATTTCTATTTTGGTCACTCAT
* *
36112628 GTTTTATATCATTTCTATTTTGGTCACTC
1 GTTTTAAATAATTTCTATTTTGGTCACTC
36112657 TCTATTCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.22, C:0.13, G:0.10, T:0.55
Consensus pattern (31 bp):
GTTTTAAATAATTTCTATTTTGGTCACTCAT
Found at i:36115631 original size:14 final size:13
Alignment explanation
Indices: 36115612--36115645 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
36115602 ACTATGCTCA
36115612 TTAATTTTTTAAT
1 TTAATTTTTTAAT
36115625 CTTAA-TTTTTAAT
1 -TTAATTTTTTAAT
36115638 TTAATTTT
1 TTAATTTT
36115646 CATCACCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 11 0.58
14 4 0.21
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (13 bp):
TTAATTTTTTAAT
Found at i:36115641 original size:12 final size:13
Alignment explanation
Indices: 36115612--36115645 Score: 52
Period size: 12 Copynumber: 2.6 Consensus size: 13
36115602 ACTATGCTCA
36115612 TTAATTTTTTAATC
1 TTAA-TTTTTAATC
36115626 TTAATTTTTAAT-
1 TTAATTTTTAATC
36115638 TTAATTTT
1 TTAATTTT
36115646 CATCACCTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 8 0.40
14 4 0.20
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (13 bp):
TTAATTTTTAATC
Found at i:36144117 original size:12 final size:13
Alignment explanation
Indices: 36144100--36144139 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 13
36144090 CTGCACATTG
36144100 AAAAATTAAAA-A
1 AAAAATTAAAATA
36144112 AAAAATTGATAAATA
1 AAAAATT-A-AAATA
36144127 AAAAATTAAAATA
1 AAAAATTAAAATA
36144140 TGTTTGACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 7 0.28
13 6 0.24
14 4 0.16
15 8 0.32
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (13 bp):
AAAAATTAAAATA
Found at i:36144862 original size:43 final size:43
Alignment explanation
Indices: 36144812--36144960 Score: 228
Period size: 43 Copynumber: 3.5 Consensus size: 43
36144802 AGGTCATTAC
* * *
36144812 CTTTAGCGGCGCTTATTTCACAAACACCACTAAAGGTTATGTT
1 CTTTAGCGGCGCTTATTCCACAAACGCCACTAAAGGTCATGTT
**
36144855 CTTTAGCGGCGCTTA-TCCTACAAACGCCGTTAAAGGTCATGTT
1 CTTTAGCGGCGCTTATTCC-ACAAACGCCACTAAAGGTCATGTT
36144898 CTTTAGCGGCGCTTATTCCACAAACGCCACTAAAGGTCATGTT
1 CTTTAGCGGCGCTTATTCCACAAACGCCACTAAAGGTCATGTT
*
36144941 CTTTAGCGGCGCTTTTTCCA
1 CTTTAGCGGCGCTTATTCCA
36144961 AAAATGTCGT
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
42 2 0.02
43 91 0.95
44 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (43 bp):
CTTTAGCGGCGCTTATTCCACAAACGCCACTAAAGGTCATGTT
Found at i:36145405 original size:21 final size:21
Alignment explanation
Indices: 36145366--36145411 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
36145356 ACTCTGCTCT
* *
36145366 GCTTCCCTCGCTGCAGCCTCC
1 GCTTCCCTCACTGCAGCCTCA
* *
36145387 GCTTCCCTCACTTCCGCCTCA
1 GCTTCCCTCACTGCAGCCTCA
36145408 GCTT
1 GCTT
36145412 TAAGTTGCTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.07, C:0.50, G:0.15, T:0.28
Consensus pattern (21 bp):
GCTTCCCTCACTGCAGCCTCA
Found at i:36147146 original size:20 final size:21
Alignment explanation
Indices: 36147123--36147161 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
36147113 AATAAATACC
36147123 AAAAAA-TTATTTTAAAAATA
1 AAAAAATTTATTTTAAAAATA
36147143 AAAAAATTTATTTTAAAAA
1 AAAAAATTTATTTTAAAAA
36147162 AATTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
AAAAAATTTATTTTAAAAATA
Found at i:36147181 original size:11 final size:11
Alignment explanation
Indices: 36147167--36147286 Score: 66
Period size: 11 Copynumber: 11.8 Consensus size: 11
36147157 AAAAAAATTT
36147167 ATTTTAAAAAA
1 ATTTTAAAAAA
36147178 ATTTT---AAA
1 ATTTTAAAAAA
36147186 A--TTAAAAAA
1 ATTTTAAAAAA
**
36147195 A--TTAAAAGT
1 ATTTTAAAAAA
* *
36147204 ATTTTTAAAAT
1 ATTTTAAAAAA
*
36147215 ATTTTAAAAAT
1 ATTTTAAAAAA
*
36147226 ATTTTAAAAAT
1 ATTTTAAAAAA
36147237 ATTTT---AAA
1 ATTTTAAAAAA
36147245 A-TTT-AAAAA
1 ATTTTAAAAAA
36147254 ATTTTAAAAAAA
1 ATTTT-AAAAAA
**
36147266 TATTTTAAAAGT
1 -ATTTTAAAAAA
36147278 ATTTTAAAA
1 ATTTTAAAA
36147287 TTTAAAAAAA
Statistics
Matches: 90, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
6 2 0.02
7 3 0.03
8 7 0.08
9 15 0.17
10 3 0.03
11 46 0.51
12 9 0.10
13 5 0.06
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (11 bp):
ATTTTAAAAAA
Found at i:36147183 original size:16 final size:15
Alignment explanation
Indices: 36147141--36147181 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
36147131 ATTTTAAAAA
36147141 TAAAAAAATTTATTT
1 TAAAAAAATTTATTT
36147156 TAAAAAAATTTATTT
1 TAAAAAAATTTATTT
36147171 TAAAAAAATTT
1 TAAAAAAATTT
36147182 TAAAATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAAAAAAATTTATTT
Found at i:36147199 original size:15 final size:15
Alignment explanation
Indices: 36147134--36147201 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 15
36147124 AAAAATTATT
*
36147134 TTAAAAATAAAAAAA
1 TTAAAATTAAAAAAA
* **
36147149 TTTATTTTAAAAAAA
1 TTAAAATTAAAAAAA
* **
36147164 TTTATTTTAAAAAAA
1 TTAAAATTAAAAAAA
36147179 TTTTAAAATTAAAAAAA
1 --TTAAAATTAAAAAAA
36147196 TTAAAA
1 TTAAAA
36147202 GTATTTTTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
15 32 0.73
17 12 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTAAAATTAAAAAAA
Found at i:36147223 original size:22 final size:22
Alignment explanation
Indices: 36147196--36147286 Score: 93
Period size: 22 Copynumber: 4.3 Consensus size: 22
36147186 ATTAAAAAAA
*
36147196 TTAAAAGTATTTTTAAAATATT
1 TTAAAAATATTTTTAAAATATT
*
36147218 TTAAAAATATTTTAAAAATATT
1 TTAAAAATATTTTTAAAATATT
*
36147240 TT--AAA-A--TTTAAAAAATT
1 TTAAAAATATTTTTAAAATATT
*
36147257 TTAAAAAAATATTTTAAAAGTATT
1 TTAAAAATAT-TTTTAAAA-TATT
36147281 TTAAAA
1 TTAAAA
36147287 TTTAAAAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
17 11 0.19
19 4 0.07
20 4 0.07
22 22 0.39
23 7 0.12
24 9 0.16
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
TTAAAAATATTTTTAAAATATT
Found at i:36147255 original size:41 final size:41
Alignment explanation
Indices: 36147207--36147295 Score: 146
Period size: 41 Copynumber: 2.2 Consensus size: 41
36147197 TAAAAGTATT
*
36147207 TTTAAAATATTTT--AAAAATATTTTAAAAATATTTTAAAA
1 TTTAAAAAATTTTAAAAAAATATTTTAAAAATATTTTAAAA
*
36147246 TTTAAAAAATTTTAAAAAAATATTTTAAAAGTATTTTAAAA
1 TTTAAAAAATTTTAAAAAAATATTTTAAAAATATTTTAAAA
36147287 TTTAAAAAA
1 TTTAAAAAA
36147296 ATAAAAAAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 12 0.26
41 34 0.74
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (41 bp):
TTTAAAAAATTTTAAAAAAATATTTTAAAAATATTTTAAAA
Found at i:36147304 original size:41 final size:41
Alignment explanation
Indices: 36147220--36147310 Score: 137
Period size: 41 Copynumber: 2.2 Consensus size: 41
36147210 AAAATATTTT
* **
36147220 AAAAATATTTTAAAAATATTTTAAAATTTAAAAAATTTTAA
1 AAAAATATTTTAAAAATATTTTAAAATTTAAAAAAATAAAA
*
36147261 AAAAATATTTTAAAAGTATTTTAAAATTTAAAAAAATAAAA
1 AAAAATATTTTAAAAATATTTTAAAATTTAAAAAAATAAAA
*
36147302 AAAATTATT
1 AAAAATATT
36147311 GTATTCGGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (41 bp):
AAAAATATTTTAAAAATATTTTAAAATTTAAAAAAATAAAA
Found at i:36147713 original size:114 final size:114
Alignment explanation
Indices: 36147512--36148238 Score: 982
Period size: 114 Copynumber: 6.4 Consensus size: 114
36147502 GAAAGTATTC
* * * * * * * * *
36147512 GTGGCGCTTAT-CTAAAATCGCAGCGAAAGCATAGTATTAACGACGTGTTGTCAAATGCGCCGCA
1 GTGGCGCTTATGGTAAAA-CGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCA
*
36147576 ATATATCTTAACCAAAACACAGAGTTTGGTCTTGAGGTATACTAGCATTA
65 ATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
*
36147626 GTGGCGCTTTTAGG-AAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCA
1 GTGGCGCTTAT-GGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCA
* *
36147690 ATATATCTTAACTAAAACGCAGAGTTTGGTATTGAGGTATACTAGCATTA
65 ATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
* * * *
36147740 GTGACGCTTAT-ATGAAAACGCCGCTAAAGCATAATATTAGCGGTGAGTCGTGAAAAGCGCCGCA
1 GTGGCGCTTATGGT-AAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCA
*
36147804 ATATATCTTAACCAAAACGCAGAGTTTGGTTTTGAGGTATACTAGCATTA
65 ATATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
* * ** * * *
36147854 GTGGCGCTTATGGTAAAACGCCGCTAAAACATATTATTAGCGGCGCTTTGTGTAAAGCGTCGCAA
1 GTGGCGCTTATGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
* * * *
36147919 -A-ATATTAACAAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCATTA
66 TATATCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATACTAGCATTA
*
36147967 GTGGCGCTTATGGTAAAATGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
1 GTGGCGCTTATGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
36148032 TATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
66 TATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
* * ** * *
36148081 GTGGCGCTTATGGTAAAACGCCGCTAAAACATATTATTAGCGGCGCTTGGTGTAAAGCGCCGCAA
1 GTGGCGCTTATGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
* * * *
36148146 -A-ATATTAACAAAAACGCAGCGCTTTGGTCTTGATGTATACTAGCATTA
66 TATATCTTAACCAAAACGCAGAG-TTTGGTCTTGAGGTATACTAGCATTA
* *
36148194 GTGGCGCTTATGGTAAAACTCCGCTAAAGCATATTATTAGCGGCG
1 GTGGCGCTTATGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCG
36148239 CGTTGTGGGA
Statistics
Matches: 544, Mismatches: 60, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
112 34 0.06
113 151 0.28
114 337 0.62
115 22 0.04
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (114 bp):
GTGGCGCTTATGGTAAAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
TATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTA
Found at i:36148049 original size:227 final size:226
Alignment explanation
Indices: 36147512--36148238 Score: 1082
Period size: 227 Copynumber: 3.2 Consensus size: 226
36147502 GAAAGTATTC
* * * * * * * * *
36147512 GTGGCGCTTATCTAAAATCGCAGCGAAAGCATAGTATTAACGACGTGTTGTCAAATGCGCCGCAA
1 GTGGCGCTTATGTAAAAT-GCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
* *
36147577 TATATCTTAACCAAAACACAGAGTTTGGTCTTGAGGTATACTAGCATTAGTGGCGCTTTTAGG-A
65 TATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTAGTGGCGCTTAT-GGTA
* * ** * * *
36147641 AAACGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAATATATCTTAACTAAA
129 AAACGCCGCTAAAACATATTATTAGCGGCGCTTCGTGTAAAGCGCCGCAA-A-ATATTAACAAAA
* * *
36147706 ACGCAGAG-TTTGGTATTGAGGTATACTAGCATTA
192 ACGCAGCGCTTTGGTCTTGATGTATACTAGCATTA
* * * * *
36147740 GTGACGCTTATATGAAAACGCCGCTAAAGCATAATATTAGCGGTGAGTCGTGAAAAGCGCCGCAA
1 GTGGCGCTTATGT-AAAATGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
*
36147805 TATATCTTAACCAAAACGCAGAGTTTGGTTTTGAGGTATACTAGCATTAGTGGCGCTTATGGTAA
65 TATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTAGTGGCGCTTATGGTAA
* *
36147870 AACGCCGCTAAAACATATTATTAGCGGCGCTTTGTGTAAAGCGTCGCAAAATATTAACAAAAACG
130 AACGCCGCTAAAACATATTATTAGCGGCGCTTCGTGTAAAGCGCCGCAAAATATTAACAAAAACG
36147935 CAGCGCTTTGGTCTTGATGTATACTAGCATTA
195 CAGCGCTTTGGTCTTGATGTATACTAGCATTA
36147967 GTGGCGCTTATGGTAAAATGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
1 GTGGCGCTTAT-GTAAAATGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAA
36148032 TATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTAGTGGCGCTTATGGTAA
65 TATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTAGTGGCGCTTATGGTAA
*
36148097 AACGCCGCTAAAACATATTATTAGCGGCGCTTGGTGTAAAGCGCCGCAAAATATTAACAAAAACG
130 AACGCCGCTAAAACATATTATTAGCGGCGCTTCGTGTAAAGCGCCGCAAAATATTAACAAAAACG
36148162 CAGCGCTTTGGTCTTGATGTATACTAGCATTA
195 CAGCGCTTTGGTCTTGATGTATACTAGCATTA
*
36148194 GTGGCGCTTATGGTAAAACT-CCGCTAAAGCATATTATTAGCGGCG
1 GTGGCGCTTAT-GTAAAA-TGCCGCTAAAGCATAGTATTAGCGGCG
36148239 CGTTGTGGGA
Statistics
Matches: 457, Mismatches: 37, Indels: 11
0.90 0.07 0.02
Matches are distributed among these distances:
226 17 0.04
227 286 0.63
228 150 0.33
229 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (226 bp):
GTGGCGCTTATGTAAAATGCCGCTAAAGCATAGTATTAGCGGCGAGTCGTGAAAAGCGCCGCAAT
ATATCTTAACCAAAACGCAGAGTTTGGTCTTGAGGTATACTAGCATTAGTGGCGCTTATGGTAAA
ACGCCGCTAAAACATATTATTAGCGGCGCTTCGTGTAAAGCGCCGCAAAATATTAACAAAAACGC
AGCGCTTTGGTCTTGATGTATACTAGCATTA
Found at i:36148283 original size:17 final size:17
Alignment explanation
Indices: 36148261--36148336 Score: 118
Period size: 17 Copynumber: 4.5 Consensus size: 17
36148251 CGCTGCGAGG
36148261 TTATTATATAATGTAGT
1 TTATTATATAATGTAGT
36148278 TTATTATAT-ATGTAGT
1 TTATTATATAATGTAGT
* *
36148294 TTATTATATAGTGTAGG
1 TTATTATATAATGTAGT
*
36148311 TTATTATATAATATAGT
1 TTATTATATAATGTAGT
36148328 TTATTATAT
1 TTATTATAT
36148337 TATATAATGT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
16 16 0.30
17 37 0.70
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (17 bp):
TTATTATATAATGTAGT
Found at i:36148299 original size:33 final size:34
Alignment explanation
Indices: 36148261--36148336 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 34
36148251 CGCTGCGAGG
* *
36148261 TTATTATATAATGTAGTTTATTATAT-ATGTAGT
1 TTATTATATAATGTAGGTTATTATATAATATAGT
*
36148294 TTATTATATAGTGTAGGTTATTATATAATATAGT
1 TTATTATATAATGTAGGTTATTATATAATATAGT
36148328 TTATTATAT
1 TTATTATAT
36148337 TATATAATGT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 24 0.62
34 15 0.38
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (34 bp):
TTATTATATAATGTAGGTTATTATATAATATAGT
Found at i:36148324 original size:22 final size:22
Alignment explanation
Indices: 36148299--36148344 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
36148289 GTAGTTTATT
36148299 ATATAGTGTAGGT-TATTATATA
1 ATATAGTGTA-GTATATTATATA
* *
36148321 ATATAGTTTATTATATTATATA
1 ATATAGTGTAGTATATTATATA
36148343 AT
1 AT
36148345 GTTTATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (22 bp):
ATATAGTGTAGTATATTATATA
Done.