Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 127 of 172
Found at i:36148341 original size:17 final size:17
Alignment explanation
Indices: 36148261--36148353 Score: 100
Period size: 17 Copynumber: 5.4 Consensus size: 17
36148251 CGCTGCGAGG
*
36148261 TTATTATATAATGTAGT
1 TTATTATATTATGTAGT
36148278 TTATTATA-TATGTAGT
1 TTATTATATTATGTAGT
*
36148294 TTATTATA-TAGTGTAGG
1 TTATTATATTA-TGTAGT
* *
36148311 TTATTATATAATATAGT
1 TTATTATATTATGTAGT
*
36148328 TTATTATATTATATAATGT
1 TTATTATATTATGT-A-GT
36148347 TTATTAT
1 TTATTAT
36148354 TTTTGGATTA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
16 17 0.26
17 38 0.58
18 2 0.03
19 9 0.14
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (17 bp):
TTATTATATTATGTAGT
Found at i:36150761 original size:9 final size:10
Alignment explanation
Indices: 36150733--36150762 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
36150723 TTGAAAAAAA
36150733 AACTTTAAAT
1 AACTTTAAAT
36150743 AACTTTAAAT
1 AACTTTAAAT
36150753 AAC-TTAAAT
1 AACTTTAAAT
36150762 A
1 A
36150763 TGGAGACTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 7 0.35
10 13 0.65
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (10 bp):
AACTTTAAAT
Found at i:36156574 original size:21 final size:21
Alignment explanation
Indices: 36156548--36156595 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
36156538 CAACTTAAAG
*
36156548 CAGAGGCGACAGCGAGGGAAC
1 CAGAGGCGACAGCGAGAGAAC
* *
36156569 CAGAGGCTACAGCGAGAGAAG
1 CAGAGGCGACAGCGAGAGAAC
36156590 CAGAGG
1 CAGAGG
36156596 TTCAAAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.35, C:0.21, G:0.42, T:0.02
Consensus pattern (21 bp):
CAGAGGCGACAGCGAGAGAAC
Found at i:36162196 original size:18 final size:17
Alignment explanation
Indices: 36162170--36162203 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36162160 CATAGTCTAT
36162170 AAATATATTATATTATAG
1 AAATATATTAT-TTATAG
*
36162188 AAATGTATTATTTATA
1 AAATATATTATTTATA
36162204 AGATTTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (17 bp):
AAATATATTATTTATAG
Found at i:36166115 original size:21 final size:21
Alignment explanation
Indices: 36166091--36166200 Score: 143
Period size: 21 Copynumber: 5.3 Consensus size: 21
36166081 GTGTTTTACT
*
36166091 TTCTGTTCAGCTCTTTTGAGC
1 TTCTGTTCAGCTCTTATGAGC
*
36166112 TTCTGTTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTATGAGC
*
36166133 TTCTGTTCAGCTCTTATGAGT
1 TTCTGTTCAGCTCTTATGAGC
*
36166154 TTCTGTTTAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
* * *
36166175 TTCTATTAAGCT-TT-CGAGC
1 TTCTGTTCAGCTCTTATGAGC
36166194 TTCTGTT
1 TTCTGTT
36166201 GGCGTATCTG
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
19 10 0.13
20 2 0.03
21 67 0.85
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTATGAGC
Found at i:36166447 original size:10 final size:8
Alignment explanation
Indices: 36166432--36166458 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
36166422 TGATGGCATA
36166432 TGATATAT
1 TGATATAT
36166440 TGATATAT
1 TGATATAT
36166448 TGATATAT
1 TGATATAT
36166456 TGA
1 TGA
36166459 AATGGATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (8 bp):
TGATATAT
Found at i:36168515 original size:13 final size:12
Alignment explanation
Indices: 36168499--36168546 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 12
36168489 AATAAAATAG
36168499 ATTATAAAAATCT
1 ATTATAAAAAT-T
36168512 ATTATAAAAA--
1 ATTATAAAAATT
36168522 ATTATAAAAATT
1 ATTATAAAAATT
*
36168534 ATTA-AAAGATT
1 ATTATAAAAATT
36168545 AT
1 AT
36168547 AAAAATTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 10 0.31
11 8 0.25
12 4 0.12
13 10 0.31
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (12 bp):
ATTATAAAAATT
Found at i:36168532 original size:9 final size:9
Alignment explanation
Indices: 36168512--36168557 Score: 58
Period size: 10 Copynumber: 4.9 Consensus size: 9
36168502 ATAAAAATCT
36168512 ATTATAAAAA
1 ATTAT-AAAA
36168522 ATTATAAAA
1 ATTATAAAA
36168531 ATTATTAAAA
1 ATTA-TAAAA
36168541 GATTATAAAA
1 -ATTATAAAA
36168551 ATT-TAAA
1 ATTATAAA
36168558 TTTAAAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
8 4 0.12
9 11 0.32
10 15 0.44
11 4 0.12
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (9 bp):
ATTATAAAA
Found at i:36168545 original size:20 final size:22
Alignment explanation
Indices: 36168497--36168553 Score: 82
Period size: 20 Copynumber: 2.6 Consensus size: 22
36168487 ACAATAAAAT
36168497 AGATTATAAAAATCTATTATAAA
1 AGATTATAAAAAT-TATTATAAA
*
36168520 AAATTATAAAAATTA-T-TAAA
1 AGATTATAAAAATTATTATAAA
36168540 AGATTATAAAAATT
1 AGATTATAAAAATT
36168554 TAAATTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
20 17 0.53
21 1 0.03
22 2 0.06
23 12 0.38
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (22 bp):
AGATTATAAAAATTATTATAAA
Found at i:36168924 original size:9 final size:9
Alignment explanation
Indices: 36168912--36168969 Score: 55
Period size: 10 Copynumber: 6.1 Consensus size: 9
36168902 ATTTTTCTTA
36168912 TTTTATAAT
1 TTTTATAAT
36168921 TTTTAATAAT
1 TTTT-ATAAT
*
36168931 TTTAATAA-
1 TTTTATAAT
36168939 TTTTATAAT
1 TTTTATAAT
*
36168948 TATTTACAACT
1 T-TTTATAA-T
36168959 TTTTAATAAT
1 TTTT-ATAAT
36168969 T
1 T
36168970 GTTAGAATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
8 7 0.17
9 9 0.22
10 19 0.47
11 5 0.12
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (9 bp):
TTTTATAAT
Found at i:36168931 original size:10 final size:10
Alignment explanation
Indices: 36168912--36168969 Score: 54
Period size: 9 Copynumber: 6.1 Consensus size: 10
36168902 ATTTTTCTTA
36168912 TTTT-ATAAT
1 TTTTAATAAT
36168921 TTTTAATAA-
1 TTTTAATAAT
36168930 TTTTAATAA-
1 TTTTAATAAT
36168939 TTTT-ATAAT
1 TTTTAATAAT
*
36168948 TATTTACA-ACT
1 T-TTTA-ATAAT
36168959 TTTTAATAAT
1 TTTTAATAAT
36168969 T
1 T
36168970 GTTAGAATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
8 4 0.10
9 19 0.46
10 14 0.34
11 3 0.07
12 1 0.02
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:36168932 original size:18 final size:18
Alignment explanation
Indices: 36168911--36168969 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
36168901 TATTTTTCTT
36168911 ATTTTATAATTTTTAATA
1 ATTTTATAATTTTTAATA
*
36168929 ATTTTAATAATTTTATAATT
1 ATTTT-ATAATTTT-TAATA
*
36168949 A-TTTACAACTTTTTAATA
1 ATTTTATAA-TTTTTAATA
36168967 ATT
1 ATT
36168970 GTTAGAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 13 0.38
19 16 0.47
20 5 0.15
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTATAATTTTTAATA
Found at i:36169088 original size:10 final size:10
Alignment explanation
Indices: 36169075--36169165 Score: 62
Period size: 10 Copynumber: 8.9 Consensus size: 10
36169065 AATTTATAAA
36169075 TTTAATAATT
1 TTTAATAATT
* *
36169085 TTTAATTACT
1 TTTAATAATT
*
36169095 TTT-ATGA-T
1 TTTAATAATT
36169103 TTTATATATATT
1 TTTA-ATA-ATT
*
36169115 TTTTATAAATT
1 TTTAAT-AATT
36169126 TTTAATAATT
1 TTTAATAATT
*
36169136 TTTACA-ACTT
1 TTTA-ATAATT
*
36169146 TTTAAAAATT
1 TTTAATAATT
36169156 TTATAATAAT
1 TT-TAATAAT
36169166 ATAAGAACTT
Statistics
Matches: 64, Mismatches: 9, Indels: 15
0.73 0.10 0.17
Matches are distributed among these distances:
8 4 0.06
9 4 0.06
10 33 0.52
11 18 0.28
12 5 0.08
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.58
Consensus pattern (10 bp):
TTTAATAATT
Found at i:36184976 original size:17 final size:16
Alignment explanation
Indices: 36184954--36184985 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
36184944 ATCTCGAAAC
36184954 TATATATGAACATTTTG
1 TATATATGAA-ATTTTG
36184971 TATATATGAAATTTT
1 TATATATGAAATTTT
36184986 AATTTGATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.38, C:0.03, G:0.09, T:0.50
Consensus pattern (16 bp):
TATATATGAAATTTTG
Found at i:36191900 original size:51 final size:51
Alignment explanation
Indices: 36191841--36191961 Score: 181
Period size: 51 Copynumber: 2.4 Consensus size: 51
36191831 CCTCTCTCAT
* *
36191841 ATTTCCTCTCAATTTCCTTCCAAAATTCTCAT-AAATCCATATTTAATTTCA
1 ATTTCCTCTCAATTTCCTTCCAAAAATCTC-TCAAACCCATATTTAATTTCA
* *
36191892 ATTTCCTCTCAATATCATTCCAAAAATCTCTCAAACCCATATTTAATTTCA
1 ATTTCCTCTCAATTTCCTTCCAAAAATCTCTCAAACCCATATTTAATTTCA
*
36191943 ATTTTCTCTCAATTTCCTT
1 ATTTCCTCTCAATTTCCTT
36191962 TTTTAAAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 1 0.02
51 61 0.98
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (51 bp):
ATTTCCTCTCAATTTCCTTCCAAAAATCTCTCAAACCCATATTTAATTTCA
Found at i:36194157 original size:29 final size:29
Alignment explanation
Indices: 36194099--36194427 Score: 462
Period size: 29 Copynumber: 11.7 Consensus size: 29
36194089 ATCAAACCCT
* * *
36194099 AACCCTAACCCTAGCCCTAACTTAATTAAA
1 AACCCTAACCCTA-ACATAACCTAATTAAA
*
36194129 AACCCCAACCCTAACATAACCTAATTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
* *
36194158 AATCCTAACCCTAAC-T----TAATGAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
36194182 AACCCTAACCCTAACATAACCTAATTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
36194211 AACCCTAACCCTAAC-T----TAATTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
36194235 AACCCTAACCCTAACATAACCTAATTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
* *
36194264 AACCCAAACCCTAACATAACATAATTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
36194293 AACCCTAACCCTAACATAACCTAATTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
36194322 AACCCTAACCCTAACATAACCTAATTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
* * *
36194351 AACCCAAACCCTAACATAACGTAACTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
* *
36194380 AACCCTAACCATAACCTAACCTAATTAAA
1 AACCCTAACCCTAACATAACCTAATTAAA
36194409 AACCCTAACCCTAACATAA
1 AACCCTAACCCTAACATAA
36194428 TAATTTTACA
Statistics
Matches: 266, Mismatches: 23, Indels: 21
0.86 0.07 0.07
Matches are distributed among these distances:
24 44 0.17
25 2 0.01
28 2 0.01
29 206 0.77
30 12 0.05
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.20
Consensus pattern (29 bp):
AACCCTAACCCTAACATAACCTAATTAAA
Found at i:36197698 original size:123 final size:124
Alignment explanation
Indices: 36197471--36197818 Score: 544
Period size: 123 Copynumber: 2.8 Consensus size: 124
36197461 CCCAAACTTG
* *
36197471 CTACTGTAGCAAAATCGGGTCCACGAGGGTGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
36197536 TAGAAGCGATTTTATACTTTTTACTCAGAAACGTCAAAAAAAATA-TTTCTTAAATGAC
66 TAGAAGCGATTTTATACTTTTTACTCAGAAACGTCAAAAAAAATATTTTCTTAAATGAC
* * * *
36197594 CTACTGTAGCAAAATAGCATCCACGAGGGCGCGATTTCACAATTTCTTCTCAAACAGCAT-TTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
36197658 TAGAAGCGATTTTATACTATTTT-CTCAGAAACGTCAAAAAAATTATTTTCTTACATGAC
66 TAGAAGCGATTTTATACT-TTTTACTCAGAAACGTCAAAAAAAATATTTTCTTAAATGAC
36197717 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* *
36197782 TATAAGCGATTTTATA-TTACTTAAC-CAGAAACGTCAA
66 TAGAAGCGATTTTATACTT--TTTACTCAGAAACGTCAA
36197819 CTCGAAATAA
Statistics
Matches: 205, Mismatches: 14, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
122 43 0.21
123 129 0.63
124 32 0.16
125 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (124 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGCGATTTTATACTTTTTACTCAGAAACGTCAAAAAAAATATTTTCTTAAATGAC
Found at i:36211530 original size:11 final size:11
Alignment explanation
Indices: 36211514--36211574 Score: 51
Period size: 11 Copynumber: 5.9 Consensus size: 11
36211504 TAAAAAAATT
36211514 TATTTTAAAAA
1 TATTTTAAAAA
36211525 TATTTT--AAA
1 TATTTTAAAAA
36211534 -A--TTAAAAA
1 TATTTTAAAAA
* * *
36211542 AAATTAAAAAA
1 TATTTTAAAAA
36211553 GTATTTTAAAAA
1 -TATTTTAAAAA
36211565 TATTTTAAAA
1 TATTTTAAAA
36211575 TTAAAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
6 2 0.05
8 4 0.10
9 4 0.10
11 22 0.55
12 8 0.20
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:36211575 original size:30 final size:30
Alignment explanation
Indices: 36211541--36211612 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 30
36211531 AAAATTAAAA
*
36211541 AAAATTAAAAAAGTATTT-TAAAAA-TATTTT
1 AAAATTAAAAAA--ATTTAAAAAAAGTATTTT
36211571 AAAATTAAAAAAATTTAAAAAAAGTATTTT
1 AAAATTAAAAAAATTTAAAAAAAGTATTTT
36211601 AAAATTAAAAAA
1 AAAATTAAAAAA
36211613 TAAAAATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 4 0.10
29 5 0.13
30 30 0.77
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (30 bp):
AAAATTAAAAAAATTTAAAAAAAGTATTTT
Found at i:36211582 original size:41 final size:41
Alignment explanation
Indices: 36211499--36211604 Score: 178
Period size: 40 Copynumber: 2.6 Consensus size: 41
36211489 ATTTATTTTT
*
36211499 AAAATTAAAAAAATTTATTTTAAAAATATTTTAAAATTAAAA
1 AAAATTAAAAAAA-GTATTTTAAAAATATTTTAAAATTAAAA
36211541 AAAATT-AAAAAAGTATTTTAAAAATATTTTAAAATTAAAA
1 AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAA
*
36211581 AAATTTAAAAAAAGTATTTTAAAA
1 AAAATTAAAAAAAGTATTTTAAAA
36211605 TTAAAAAATA
Statistics
Matches: 61, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
40 32 0.52
41 23 0.38
42 6 0.10
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (41 bp):
AAAATTAAAAAAAGTATTTTAAAAATATTTTAAAATTAAAA
Found at i:36213104 original size:27 final size:28
Alignment explanation
Indices: 36213047--36213112 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 28
36213037 GCTTCATTTG
* *
36213047 TTTTTCAAAAATATTTTTTTATTTTTTTA
1 TTTTT-AAAAATATTTTTTCATTTTTCTA
36213076 TTTTTATAAAATA-TTTTTCA-TTTTCTA
1 TTTTTA-AAAATATTTTTTCATTTTTCTA
36213103 TTTTTAAAAA
1 TTTTTAAAAA
36213113 CTTTAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 4 0.12
27 12 0.35
28 7 0.21
29 11 0.32
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (28 bp):
TTTTTAAAAATATTTTTTCATTTTTCTA
Found at i:36219050 original size:15 final size:14
Alignment explanation
Indices: 36218999--36219051 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
36218989 ATCTATAATG
*
36218999 TATATGAAAAAAAT
1 TATATAAAAAAAAT
*
36219013 TATATAAGAAATATAT
1 TATATAA-AAA-AAAT
36219029 T-TATAAAAAAAAT
1 TATATAAAAAAAAT
36219042 TATACTAAAA
1 TATA-TAAAA
36219052 GCTAATAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 4 0.12
14 11 0.34
15 13 0.41
16 4 0.12
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (14 bp):
TATATAAAAAAAAT
Found at i:36225782 original size:36 final size:36
Alignment explanation
Indices: 36225736--36225926 Score: 229
Period size: 36 Copynumber: 5.0 Consensus size: 36
36225726 GGTAGCTTTA
*
36225736 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
36225772 GTTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
* * * *
36225808 GCTACATTTATCTGATCAAGAGACAAAGTGATAAGTGGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAA---GT
36225847 AGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GC--TA--T--ACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
36225890 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
36225926 G
1 G
36225927 GTAGCTTAGC
Statistics
Matches: 133, Mismatches: 12, Indels: 20
0.81 0.07 0.12
Matches are distributed among these distances:
36 94 0.71
38 1 0.01
39 2 0.02
40 4 0.03
42 4 0.03
43 2 0.02
46 26 0.20
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (36 bp):
GCTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:36225863 original size:82 final size:81
Alignment explanation
Indices: 36225777--36225969 Score: 318
Period size: 82 Copynumber: 2.4 Consensus size: 81
36225767 TAAGTGTTAT
*
36225777 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACATTTATCTGATCAAGAGACAAAGTGATAA
1 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
36225842 GTGGTAGCTTTAGCTAC
66 GTGGTAGC-TTAGCTAC
* *
36225859 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTATACTTATCTGATCAAGTGACAAAGTGATAA
1 ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
36225924 GTGGTAGCTTAGCTAC
66 GTGGTAGCTTAGCTAC
* *
36225940 ACTTATCTGATC-AGGGACAAA-TGATAAGTG
1 ACTTATCTGATCAAGTGAAAAAGTGATAAGTG
36225970 ATCATACGTA
Statistics
Matches: 106, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
79 9 0.08
80 7 0.07
81 20 0.19
82 70 0.66
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.29
Consensus pattern (81 bp):
ACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACACTTATCTGATCAAGAGACAAAGTGATAA
GTGGTAGCTTAGCTAC
Found at i:36225908 original size:118 final size:118
Alignment explanation
Indices: 36225700--36225926 Score: 427
Period size: 118 Copynumber: 1.9 Consensus size: 118
36225690 TTTGAGTACT
*
36225700 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
*
36225765 GATAAGTGTTATACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACATTTA
66 GATAAGTGCTATACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACATTTA
36225818 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
*
36225883 GATAAGTGCTATACTTATCTGATCAAGTGACAAAGTGATAAGTG
66 GATAAGTGCTATACTTATCTGATCAAGTGAAAAAGTGATAAGTG
36225927 GTAGCTTAGC
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 106 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (118 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTATACTTATCTGATCAAGTGAAAAAGTGATAAGTGCTACATTTA
Found at i:36238245 original size:27 final size:26
Alignment explanation
Indices: 36238183--36238278 Score: 68
Period size: 27 Copynumber: 3.5 Consensus size: 26
36238173 CTTTCTCAAC
* *
36238183 AAAA-ATTCAAAATAAATTTAAAATTC
1 AAAATATTTAAAA-AAATTTAAAATTT
36238209 AAAATATTTATAAAAAATTTAAAATTT
1 AAAATATTTA-AAAAAATTTAAAATTT
* * * *
36238236 ATATTTTTTAAAATAATTATAAGAATTTT
1 AAAATATTTAAAAAAATT-TAA-AA-TTT
36238265 AAAAATATTCTAAA
1 -AAAATATT-TAAA
36238279 GAATATATAA
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
26 11 0.20
27 26 0.48
28 5 0.09
29 3 0.06
30 5 0.09
31 4 0.07
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (26 bp):
AAAATATTTAAAAAAATTTAAAATTT
Found at i:36240555 original size:169 final size:171
Alignment explanation
Indices: 36240224--36240560 Score: 446
Period size: 169 Copynumber: 2.0 Consensus size: 171
36240214 TGCTTGTGTT
* * * *
36240224 GGGGGAGGGCTCTCGTCATGGTATACCCTTTGAGGGTGTTAAGTTGACAATATTTCTTCATCATT
1 GGGGGAGGACTCTCGTCATGGTATACCCCTTAAGGGTGTCAAGTTGACAATATTTCTT-ATCATT
* * * *
36240289 TAAGTTAGTGATGTGACTTGATATGATGAAAATACGAGGCATGTGAGTATTGGATATCAGTTGTC
65 TAAGTTAGTGATGTGACTTGATATGATGAAAATACGAGGCATATGAGTATTAGATATCAATTATC
**
36240354 TTACTAGATGATAATTACAAGTTGACAAATTAGTTTAGGGGA
130 TTACTAGATGATAATTACAACCTGACAAATTAGTTTAGGGGA
* *
36240396 GGGGGAGGATTCTCGTCATGGTATACCCCTTAAGGGTGTCAGGTTGACAATATTTC-T-TCATTT
1 GGGGGAGGACTCTCGTCATGGTATACCCCTTAAGGGTGTCAAGTTGACAATATTTCTTATCATTT
* * ** * *
36240459 AAGTTAGTGATGTGACTTGATGTGATGGAGGTCCGAGGCATATGAGTGTTAGATATCAATTATCT
66 AAGTTAGTGATGTGACTTGATATGATGAAAATACGAGGCATATGAGTATTAGATATCAATTATCT
* * *
36240524 TGCTA-AGTGATAATTGCAACCTGATAAATTAGTTTAG
131 TACTAGA-TGATAATTACAACCTGACAAATTAGTTTAG
36240561 TTTGACATAG
Statistics
Matches: 143, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
168 1 0.01
169 91 0.64
171 1 0.01
172 50 0.35
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (171 bp):
GGGGGAGGACTCTCGTCATGGTATACCCCTTAAGGGTGTCAAGTTGACAATATTTCTTATCATTT
AAGTTAGTGATGTGACTTGATATGATGAAAATACGAGGCATATGAGTATTAGATATCAATTATCT
TACTAGATGATAATTACAACCTGACAAATTAGTTTAGGGGA
Found at i:36242628 original size:101 final size:101
Alignment explanation
Indices: 36242453--36242643 Score: 355
Period size: 101 Copynumber: 1.9 Consensus size: 101
36242443 GGTGGTAGCT
36242453 TTGTTTTCTTTTCAATCTCTTCACGCACCTTGTTTGAGTTTTGAGAATGTAACCTGTAAAATTGT
1 TTGTTTTCTTTTCAATCTCTTCACGCACCTTGTTTGAGTTTTGAGAATGTAACCTGTAAAATTGT
36242518 TATGTCCTCATTGTTAGTAAATTGAAGAATGTAACC
66 TATGTCCTCATTGTTAGTAAATTGAAGAATGTAACC
* * *
36242554 TTGTTTTCTTTTCAATCTCTTTATGCACCTTGTTTGGGTTTTGAGAATGTAACCTGTAAAATTGT
1 TTGTTTTCTTTTCAATCTCTTCACGCACCTTGTTTGAGTTTTGAGAATGTAACCTGTAAAATTGT
36242619 TATGTCCTCATTGTTAGTAAATTGA
66 TATGTCCTCATTGTTAGTAAATTGA
36242644 TTAATGCCTG
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 87 1.00
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (101 bp):
TTGTTTTCTTTTCAATCTCTTCACGCACCTTGTTTGAGTTTTGAGAATGTAACCTGTAAAATTGT
TATGTCCTCATTGTTAGTAAATTGAAGAATGTAACC
Found at i:36247858 original size:14 final size:13
Alignment explanation
Indices: 36247836--36247869 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
36247826 AAAGTATTTT
*
36247836 AAAATTAAAAATTA
1 AAAAATAAAAA-TA
36247850 AAAAATAAAAATA
1 AAAAATAAAAATA
36247863 AAAAATA
1 AAAAATA
36247870 TATATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.47
14 10 0.53
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (13 bp):
AAAAATAAAAATA
Found at i:36249627 original size:18 final size:17
Alignment explanation
Indices: 36249594--36249632 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
36249584 TTGTATAAAT
36249594 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
36249612 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
36249629 TGTG
1 TGTG
36249633 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:36249912 original size:23 final size:23
Alignment explanation
Indices: 36249858--36249932 Score: 125
Period size: 23 Copynumber: 3.3 Consensus size: 23
36249848 AGTGTTATTG
*
36249858 ATCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
36249881 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
36249903 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
36249926 ATCAGTG
1 ATCAGTG
36249933 TGGCACTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
22 20 0.42
23 28 0.58
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:36253262 original size:18 final size:19
Alignment explanation
Indices: 36253224--36253264 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
36253214 ATCAAAACTC
36253224 GTTTCTCCAAAGTTTTAAA
1 GTTTCTCCAAAGTTTTAAA
*
36253243 GTTTCTCCAAA-TTTTTAA
1 GTTTCTCCAAAGTTTTAAA
36253261 GTTT
1 GTTT
36253265 TTAAAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.27, C:0.15, G:0.10, T:0.49
Consensus pattern (19 bp):
GTTTCTCCAAAGTTTTAAA
Found at i:36253503 original size:15 final size:15
Alignment explanation
Indices: 36253469--36253540 Score: 67
Period size: 15 Copynumber: 4.7 Consensus size: 15
36253459 TATTATTGAA
36253469 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
36253482 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
36253497 AAATATTTATTACAATTAT
1 AAATA-TT-TT--AATAAT
*
36253516 AAATATATTAATAAT
1 AAATATTTTAATAAT
36253531 AAATATTTTA
1 AAATATTTTA
36253541 TAGTATAAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
13 4 0.09
14 6 0.13
15 20 0.43
16 2 0.04
17 4 0.09
18 1 0.02
19 10 0.21
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:36255522 original size:45 final size:45
Alignment explanation
Indices: 36255453--36255555 Score: 188
Period size: 45 Copynumber: 2.3 Consensus size: 45
36255443 TAGTACCTAA
36255453 GTACTCTATTCAAAGCTTGCCAATGTAAACTACTTGGATTACTTGT
1 GTAC-CTATTCAAAGCTTGCCAATGTAAACTACTTGGATTACTTGT
*
36255499 GTACCTATTCAAAGCTTGCCAATGTAAACTACTTGGATTATTTGT
1 GTACCTATTCAAAGCTTGCCAATGTAAACTACTTGGATTACTTGT
36255544 GTACCTATTCAA
1 GTACCTATTCAA
36255556 TGTCCCAACA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
45 52 0.93
46 4 0.07
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (45 bp):
GTACCTATTCAAAGCTTGCCAATGTAAACTACTTGGATTACTTGT
Found at i:36256901 original size:57 final size:57
Alignment explanation
Indices: 36256813--36256989 Score: 214
Period size: 57 Copynumber: 3.1 Consensus size: 57
36256803 GAATTAGTGA
*
36256813 AAAATGGAGAAATGGGAAATCATTTGGAAATGATTAT-GTCTTTCTCCAAAATGAAAATG
1 AAAACGGAGAAAT--GAAATCATTTGGAAATGATTATGGT-TTTCTCCAAAATGAAAATG
* *
36256872 GAAACGGAGAAATAGAAA-CATTTGAAAATGATTATGGTTTTCTCCAAAATGAAAATG
1 AAAACGGAGAAAT-GAAATCATTTGGAAATGATTATGGTTTTCTCCAAAATGAAAATG
** * * ** *
36256929 AAAATAGAGAAATGAAATTATTTGGAAATGAATATGGTTTTCTATAAAATGAAAAAG
1 AAAACGGAGAAATGAAATCATTTGGAAATGATTATGGTTTTCTCCAAAATGAAAATG
36256986 AAAA
1 AAAA
36256990 ATAAATTTAT
Statistics
Matches: 103, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
56 4 0.04
57 82 0.80
58 6 0.06
59 11 0.11
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (57 bp):
AAAACGGAGAAATGAAATCATTTGGAAATGATTATGGTTTTCTCCAAAATGAAAATG
Found at i:36259898 original size:17 final size:18
Alignment explanation
Indices: 36259850--36259909 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 18
36259840 GGGTGAGAAG
*
36259850 TAAAAATTTAGGGAGAAAA
1 TAAAAATTTTGGG-GAAAA
*
36259869 TAAAAAGTTTTGGGGAGAA
1 TAAAAA-TTTTGGGGAAAA
36259888 T-AAAATTTTGGGGAAAAA
1 TAAAAATTTTGGGG-AAAA
36259906 TAAA
1 TAAA
36259910 TGGGGGGAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
17 8 0.23
18 8 0.23
19 13 0.37
20 6 0.17
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.25
Consensus pattern (18 bp):
TAAAAATTTTGGGGAAAA
Found at i:36260150 original size:20 final size:20
Alignment explanation
Indices: 36260114--36260151 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36260104 AGTGAGAATG
*
36260114 AGTAAAAATTTTGGAGGAAA
1 AGTAAAAATCTTGGAGGAAA
36260134 AGTAAAAATACTT-GAGGA
1 AGTAAAAAT-CTTGGAGGA
36260152 TTTGGTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.50, C:0.03, G:0.24, T:0.24
Consensus pattern (20 bp):
AGTAAAAATCTTGGAGGAAA
Found at i:36263740 original size:22 final size:22
Alignment explanation
Indices: 36263715--36263762 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
36263705 ACTGCCTAAT
36263715 TTATAG-AAAAGGCAAAGGAAAG
1 TTATAGTAAAAGGCAAAGG-AAG
* * *
36263737 TTATTGTAAGAGGCAAATGAAG
1 TTATAGTAAAAGGCAAAGGAAG
36263759 TTAT
1 TTAT
36263763 TTTTAGAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.46, C:0.04, G:0.25, T:0.25
Consensus pattern (22 bp):
TTATAGTAAAAGGCAAAGGAAG
Found at i:36267254 original size:10 final size:10
Alignment explanation
Indices: 36267239--36267267 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
36267229 GTATAAGTCG
36267239 GAGGAAGAAA
1 GAGGAAGAAA
36267249 GAGGAAGAAA
1 GAGGAAGAAA
36267259 GAGGAAGAA
1 GAGGAAGAA
36267268 CAGACCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (10 bp):
GAGGAAGAAA
Found at i:36279365 original size:21 final size:21
Alignment explanation
Indices: 36279310--36279370 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
36279300 CTAGTTATAC
* **
36279310 TTTTTTCCATTTTCATTTTCCT
1 TTTTTTCC-TTTTTATTTTAAT
36279332 TTTGTTTCC-TTTTATTTTAAT
1 TTT-TTTCCTTTTTATTTTAAT
*
36279353 TTTTTTCCTTTTTCTTTT
1 TTTTTTCCTTTTTATTTT
36279371 TTTTTCTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
20 5 0.15
21 20 0.61
22 3 0.09
23 5 0.15
ACGTcount: A:0.08, C:0.16, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTTTCCTTTTTATTTTAAT
Found at i:36282238 original size:21 final size:22
Alignment explanation
Indices: 36282214--36282255 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
36282204 TTTAAAATTT
36282214 TAATTAAT-ATTTTTTTAAAAA
1 TAATTAATAATTTTTTTAAAAA
*
36282235 TAATTATTCAATTTTTTTAAA
1 TAATTAAT-AATTTTTTTAAA
36282256 GGTTGATGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
23 11 0.61
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATTAATAATTTTTTTAAAAA
Found at i:36286697 original size:20 final size:19
Alignment explanation
Indices: 36286662--36286710 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
36286652 CTAATTACTT
*
36286662 AAAATTATATAATTAG-AG
1 AAAATAATATAATTAGAAG
36286680 AAAATAATATAAATTTAGAAG
1 AAAATAATAT-AA-TTAGAAG
*
36286701 AAATTAATAT
1 AAAATAATAT
36286711 GAATAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 9 0.35
19 2 0.08
20 4 0.15
21 11 0.42
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (19 bp):
AAAATAATATAATTAGAAG
Found at i:36286842 original size:19 final size:20
Alignment explanation
Indices: 36286818--36286855 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
36286808 ATATTAAAAT
36286818 AATAAATTATATA-ATTTAA
1 AATAAATTATATATATTTAA
*
36286837 AATAAATTTTATATATTTA
1 AATAAATTATATATATTTA
36286856 TATTGTTTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AATAAATTATATATATTTAA
Found at i:36290702 original size:16 final size:15
Alignment explanation
Indices: 36290665--36290700 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
36290655 CAAAATCAAT
36290665 ATTTTTACAACATCC
1 ATTTTTACAACATCC
* *
36290680 ATTTTTACAATATTC
1 ATTTTTACAACATCC
36290695 ATTTTT
1 ATTTTT
36290701 TATGGATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTTTTACAACATCC
Found at i:36290984 original size:18 final size:18
Alignment explanation
Indices: 36290961--36290996 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36290951 TGATAAATAA
* *
36290961 ATAATTATAATTCATTTT
1 ATAATTAAAATTAATTTT
36290979 ATAATTAAAATTAATTTT
1 ATAATTAAAATTAATTTT
36290997 TTTAAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
ATAATTAAAATTAATTTT
Found at i:36291470 original size:52 final size:52
Alignment explanation
Indices: 36291408--36291563 Score: 285
Period size: 52 Copynumber: 3.0 Consensus size: 52
36291398 AAATTCTGTG
*
36291408 TTTCTAAAAAATAAGTAATTTAGTATTTATCAATTTGGAGGGTGAGTATATA
1 TTTCTAAAAAATAAGCAATTTAGTATTTATCAATTTGGAGGGTGAGTATATA
36291460 TTTCTAAAAAATAAGCAATTTAGTATTTATCAATTTGGAGGGTGAGTATATA
1 TTTCTAAAAAATAAGCAATTTAGTATTTATCAATTTGGAGGGTGAGTATATA
* *
36291512 TTTCTAAAAAATAAGCAATTTAGCATTTATCAATTTCGAGGGTGAGTATATA
1 TTTCTAAAAAATAAGCAATTTAGTATTTATCAATTTGGAGGGTGAGTATATA
36291564 AAGGCAATTA
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 101 1.00
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.38
Consensus pattern (52 bp):
TTTCTAAAAAATAAGCAATTTAGTATTTATCAATTTGGAGGGTGAGTATATA
Found at i:36296267 original size:17 final size:17
Alignment explanation
Indices: 36296245--36296281 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
36296235 TCAAAGGAGG
36296245 CTAGGCTACTTATCCAC
1 CTAGGCTACTTATCCAC
36296262 CTAGGCTACTTATCCAC
1 CTAGGCTACTTATCCAC
36296279 CTA
1 CTA
36296282 TCTTGCCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.35, G:0.11, T:0.30
Consensus pattern (17 bp):
CTAGGCTACTTATCCAC
Found at i:36302243 original size:38 final size:38
Alignment explanation
Indices: 36302187--36302274 Score: 149
Period size: 38 Copynumber: 2.3 Consensus size: 38
36302177 CTAGTCTACA
36302187 TATGTGGTGTGTAAGGATGGATGGGTCTTTCAAGGTCC
1 TATGTGGTGTGTAAGGATGGATGGGTCTTTCAAGGTCC
* *
36302225 TATGTAGTGTGTAGGGATGGATGGGTCTTTCAAGGTCC
1 TATGTGGTGTGTAAGGATGGATGGGTCTTTCAAGGTCC
*
36302263 TATATGGTGTGT
1 TATGTGGTGTGT
36302275 TTGGTTAGAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.18, C:0.09, G:0.36, T:0.36
Consensus pattern (38 bp):
TATGTGGTGTGTAAGGATGGATGGGTCTTTCAAGGTCC
Found at i:36313084 original size:24 final size:24
Alignment explanation
Indices: 36313072--36313127 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
36313062 ACAATGAGCC
36313072 TTAACGGGTAGCTCCAAAGAGCAA
1 TTAACGGGTAGCTCCAAAGAGCAA
* *
36313096 TTAACGGTTAGCTCTGAAA-AGCAA
1 TTAACGGGTAGCTC-CAAAGAGCAA
36313120 TTAACGGG
1 TTAACGGG
36313128 AAGCACCAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 25 0.89
25 3 0.11
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (24 bp):
TTAACGGGTAGCTCCAAAGAGCAA
Found at i:36313228 original size:26 final size:26
Alignment explanation
Indices: 36313139--36313240 Score: 72
Period size: 26 Copynumber: 4.1 Consensus size: 26
36313129 AGCACCAGAT
* * *
36313139 AGCCATATAACGGGAAGTTCAAG-CG
1 AGCCATATAACGGGAAGCTCATGAAG
* **
36313164 AG-CA-CTAACGGGAAGCTCACAAAG
1 AGCCATATAACGGGAAGCTCATGAAG
* *
36313188 AGCC-TTTAATTGGGAAGCTCATGAAG
1 AGCCATATAA-CGGGAAGCTCATGAAG
36313214 AGCCATATAACGGGACA-CTCAT-AAG
1 AGCCATATAACGGGA-AGCTCATGAAG
36313239 AG
1 AG
36313241 TTGAGGTGTG
Statistics
Matches: 60, Mismatches: 11, Indels: 12
0.72 0.13 0.14
Matches are distributed among these distances:
23 13 0.22
24 5 0.08
25 11 0.18
26 26 0.43
27 5 0.08
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
AGCCATATAACGGGAAGCTCATGAAG
Found at i:36317285 original size:31 final size:29
Alignment explanation
Indices: 36317250--36317309 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 29
36317240 TACATATTTG
*
36317250 AATTTTTATAATATGTTATATTTTTTT-TAGT
1 AATTTTGATAAT-T-TTA-ATTTTTTTATAGT
36317281 AATTTTGATAATTTTAATTTTTTTATAGT
1 AATTTTGATAATTTTAATTTTTTTATAGT
36317310 TTTGCACTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 8 0.30
29 7 0.26
30 1 0.04
31 11 0.41
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (29 bp):
AATTTTGATAATTTTAATTTTTTTATAGT
Found at i:36320298 original size:32 final size:32
Alignment explanation
Indices: 36320255--36320344 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 32
36320245 AATAGTATTT
* *
36320255 TATT-AATTTAATATTAAATTGATTATCTTAA
1 TATTAAATTTAATATTAAATTGATTAACATAA
* * * *
36320286 TATTAAATTTAAT-CTAATATTTATCAAGATAA
1 TATTAAATTTAATATTAA-ATTGATTAACATAA
* *
36320318 GATTAAATTTAATATTAAAGTGATTAA
1 TATTAAATTTAATATTAAATTGATTAA
36320345 GTTTAATCAT
Statistics
Matches: 45, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
31 7 0.16
32 35 0.78
33 3 0.07
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.46
Consensus pattern (32 bp):
TATTAAATTTAATATTAAATTGATTAACATAA
Found at i:36324679 original size:13 final size:13
Alignment explanation
Indices: 36324659--36324721 Score: 99
Period size: 13 Copynumber: 4.8 Consensus size: 13
36324649 TTAAACCAAT
36324659 CTTTTCAAAAGCA
1 CTTTTCAAAAGCA
*
36324672 CTTCTCAAAAGCA
1 CTTTTCAAAAGCA
* *
36324685 CTTTTCCACAGCA
1 CTTTTCAAAAGCA
36324698 CTTTTCAAAAGCA
1 CTTTTCAAAAGCA
36324711 CTTTTCAAAAG
1 CTTTTCAAAAG
36324722 TAATGAAGAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 44 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (13 bp):
CTTTTCAAAAGCA
Found at i:36331840 original size:29 final size:29
Alignment explanation
Indices: 36331799--36331854 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
36331789 TAAAATTATC
36331799 AAATATTAAATTAAAATAATATAAAAAGT
1 AAATATTAAATTAAAATAATATAAAAAGT
*
36331828 AAATATTAAATTAAAATAGTATAAAAA
1 AAATATTAAATTAAAATAATATAAAAA
36331855 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (29 bp):
AAATATTAAATTAAAATAATATAAAAAGT
Found at i:36339510 original size:31 final size:31
Alignment explanation
Indices: 36339475--36339535 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
36339465 ACTCGGTAAC
*
36339475 TGAACTATTAAAAAGTTTTCATTTAAGTCAT
1 TGAACAATTAAAAAGTTTTCATTTAAGTCAT
* *
36339506 TGAACAATTCAAAAGTTTTTATTTAAGTCA
1 TGAACAATTAAAAAGTTTTCATTTAAGTCA
36339536 CTAAGCTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (31 bp):
TGAACAATTAAAAAGTTTTCATTTAAGTCAT
Found at i:36342000 original size:23 final size:23
Alignment explanation
Indices: 36341969--36342013 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
36341959 TACAATCAAC
36341969 ATTACACATATC-AACAAGCCATA
1 ATTACACAT-TCAAACAAGCCATA
*
36341992 ATTAGACATTCAAAACAAGCCA
1 ATTACACATTC-AAACAAGCCA
36342014 AAATAAGTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 2 0.11
23 8 0.42
24 9 0.47
ACGTcount: A:0.49, C:0.24, G:0.07, T:0.20
Consensus pattern (23 bp):
ATTACACATTCAAACAAGCCATA
Found at i:36343297 original size:101 final size:101
Alignment explanation
Indices: 36343107--36343346 Score: 363
Period size: 101 Copynumber: 2.4 Consensus size: 101
36343097 AATTCATCAT
* * * *
36343107 TTACATTCGTAGTGCCATAATCCAGTTATGGTCTTATCATCAGAATGTCATAGCCCAACTATGAT
1 TTACGTTCATAGTGTCATAATCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGAT
36343172 CTTACATATAAACACTACCATGGTCCAAACATGGTC
66 CTTACATATAAACACTACCATGGTCCAAACATGGTC
* *
36343208 TTACGTTTATAGTGTCATAATCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGGT
1 TTACGTTCATAGTGTCATAATCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGAT
* ** * *
36343273 CTTACATATAAATACTGTCTTGGTCCAACCATGGTC
66 CTTACATATAAACACTACCATGGTCCAAACATGGTC
* *
36343309 TTACGTTCATAGTGTCATAACCCAGTTATGATCTTATC
1 TTACGTTCATAGTGTCATAATCCAGTTATGGTCTTATC
36343347 CATTGATTCA
Statistics
Matches: 125, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 125 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (101 bp):
TTACGTTCATAGTGTCATAATCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAACTATGAT
CTTACATATAAACACTACCATGGTCCAAACATGGTC
Found at i:36346727 original size:32 final size:32
Alignment explanation
Indices: 36346686--36346753 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
36346676 ATTAGTTAGT
36346686 TGTTACAACATTGTCTTTGACATTGAAAGCTA
1 TGTTACAACATTGTCTTTGACATTGAAAGCTA
36346718 TGTTACAACATTGTCTTTGACATTGAAAGCTA
1 TGTTACAACATTGTCTTTGACATTGAAAGCTA
36346750 TGTT
1 TGTT
36346754 TTCTCAACTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (32 bp):
TGTTACAACATTGTCTTTGACATTGAAAGCTA
Found at i:36349104 original size:50 final size:50
Alignment explanation
Indices: 36348995--36349180 Score: 255
Period size: 50 Copynumber: 3.7 Consensus size: 50
36348985 ACATGTCAAA
* ** * * * *
36348995 GCCATGTCCTAGACATGGTCTTACATGGGATGTTCTCATATCGGTACCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAAC
* ** *
36349046 GCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
*
36349096 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGATGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
36349146 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36349181 TTACCCAAAT
Statistics
Matches: 121, Mismatches: 14, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 93 0.77
51 28 0.23
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAAC
Found at i:36350540 original size:30 final size:29
Alignment explanation
Indices: 36350483--36350541 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
36350473 TTTGGTTTAA
*
36350483 TGTGTAATGTTATACATGAACTTTGATTT
1 TGTGCAATGTTATACATGAACTTTGATTT
*
36350512 TGTGCAATTTTATACAT-AACATTTTGATTT
1 TGTGCAATGTTATACATGAAC--TTTGATTT
36350542 AATTTGATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 3 0.12
29 15 0.58
30 8 0.31
ACGTcount: A:0.29, C:0.08, G:0.14, T:0.49
Consensus pattern (29 bp):
TGTGCAATGTTATACATGAACTTTGATTT
Found at i:36351777 original size:24 final size:24
Alignment explanation
Indices: 36351750--36351795 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
36351740 TTACATTAAA
36351750 TTAAAATAAAAAATATTTATTTTT
1 TTAAAATAAAAAATATTTATTTTT
** *
36351774 TTAACTTAAAATATATTTATTT
1 TTAAAATAAAAAATATTTATTT
36351796 AATTAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
TTAAAATAAAAAATATTTATTTTT
Found at i:36351801 original size:24 final size:24
Alignment explanation
Indices: 36351756--36351801 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
36351746 TAAATTAAAA
**
36351756 TAAAAAATATTTATTTTTTTAACT
1 TAAAAAATATTTATTTAATTAACT
*
36351780 TAAAATATATTTATTTAATTAA
1 TAAAAAATATTTATTTAATTAA
36351802 TAAAAATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
TAAAAAATATTTATTTAATTAACT
Found at i:36351805 original size:22 final size:22
Alignment explanation
Indices: 36351754--36351807 Score: 63
Period size: 24 Copynumber: 2.4 Consensus size: 22
36351744 ATTAAATTAA
**
36351754 AATAAAAAATATTTATTTTTTT
1 AATAAAAAATATTTATTTAATT
*
36351776 AACTTAAAATATATTTATTTAATT
1 AA--TAAAAAATATTTATTTAATT
36351800 AATAAAAA
1 AATAAAAA
36351808 TTAATTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 7 0.27
24 19 0.73
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
AATAAAAAATATTTATTTAATT
Found at i:36359434 original size:50 final size:50
Alignment explanation
Indices: 36359288--36359745 Score: 176
Period size: 50 Copynumber: 9.2 Consensus size: 50
36359278 TTTTTCTGTT
* * ** *
36359288 TGTTTAACTGCAATGTC-AGGAGGTAAGATTCGCCATCGTAGCTTCAATC
1 TGTTCAACTGCAATGTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
** * ** * * ** * *
36359337 TGTTCCGCTG-TATCG-CCTGGAAGTAAGATTCGCCGTTGTGGCATCAATC
1 TGTTCAACTGCAAT-GTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
* * * * *
36359386 TTTTGAGCTGCAATGTCGGGGAAATGAGATTTGCCATCATAGCTTCAATC
1 TGTTCAACTGCAATGTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
* * *
36359436 TGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATC
1 TGTTCAACTGCAATGTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
* * * ** ** * ** * *
36359486 TATTCCACTACACCG-CTAAGGAAAGTAAGATTCGCCGTTGTGGCCTCAATC
1 TGTTCAACTGCAATGTC-GGGGAAA-TAAGATTCGCCATCATAGCTTCAATC
* * ** **
36359537 T-TTTAATTGCAATGTCGGGGAAGCAAGATTCGCCATTGTAGCTTCAATC
1 TGTTCAACTGCAATGTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
* * ** * * * * ** *
36359586 TGTTCCACTACACCGCCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATC
1 TGTTCAACTGCAATGTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
* * *** * ** *
36359636 T-TTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCATCAATC
1 TGTTCAACTGCAATGTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
* * * * * **
36359685 TGTTTC-GCTGC-ATCGCCTGGGAAGTAAGATTCGCCGTTGTAGCTTCAATC
1 TG-TTCAACTGCAAT-GTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
* *
36359735 TTTTTAACTGC
1 TGTTCAACTGC
36359746 CGGGGAAGCA
Statistics
Matches: 307, Mismatches: 90, Indels: 23
0.73 0.21 0.05
Matches are distributed among these distances:
48 3 0.01
49 107 0.35
50 170 0.55
51 27 0.09
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (50 bp):
TGTTCAACTGCAATGTCGGGGAAATAAGATTCGCCATCATAGCTTCAATC
Found at i:36359823 original size:50 final size:49
Alignment explanation
Indices: 36359706--36360175 Score: 412
Period size: 50 Copynumber: 9.7 Consensus size: 49
36359696 ATCGCCTGGG
* * ** *
36359706 AAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTTAACTGC--CG---GGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTTTCCACTGCAACGCTAGGA
* *
36359751 AAGCAAGATCCGCTATTGTAGCTTCAATTTATTCCACTGCAACGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATTT-TTCCACTGCAACGCTAGGA
** * * *
36359801 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATG-TCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTTTCCACTGCAACGCT-AGGA
*
36359851 AAGTAAGATCCGCTGTTGTAGCTTCAATTTGTTCCACTGCAATGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAATTT-TTCCACTGCAACGCTAGGA
* ** *
36359901 AAGTAAGATCCGCTGTTGTATCTTCAATCTTTTTAACTGC--CG---GGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTTTCCACTGCAACGCTAGGA
* * * *
36359946 AAGCAAGATCCACTGTTATAGCTTCAATCTGTTCCACTGCAACGCTAGGA
1 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTTTCCACTGCAACGCTAGGA
** * * *
36359996 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATG-TCAGGG
1 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTTTCCACTGCAACGCT-AGGA
* * * *
36360046 AAGTAAGATCCGCTGTTGTAGCTTCAATCTGTTCCACTGGAACGTTAGAA
1 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTTTCCACTGCAACGCTAGGA
* *
36360096 AAGTAAGATCCGCTGTTGTAGCTTCAATCTATTCCACTGCATC-CT-GG-
1 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTTTCCACTGCAACGCTAGGA
* * *
36360143 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTT
1 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTTT
36360176 GAATTGCAAT
Statistics
Matches: 350, Mismatches: 57, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
44 2 0.01
45 66 0.19
47 33 0.09
48 2 0.01
49 5 0.01
50 236 0.67
51 6 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (49 bp):
AAGTAAGATCCGCTGTTGTAGCTTCAATTTTTCCACTGCAACGCTAGGA
Found at i:36359945 original size:195 final size:195
Alignment explanation
Indices: 36359425--36360125 Score: 888
Period size: 195 Copynumber: 3.6 Consensus size: 195
36359415 TTTGCCATCA
* * * * * * *
36359425 TAGCTTCAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTATT
1 TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCCGTTGTAGCTTCAATCTGTT
* * * * * *
36359490 CCACTACACCGCTAAGGAAAGTAAGATTCGCCGTTGTGGCCTCAATC-TTTTAATTGCAATGTCG
66 CCACTGCAACGCT-AGGAAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTTAA---C--TGCCG
* * * * * *
36359554 GGGAAGCAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTACACCGCCT-GGGAAGTAAGATTC
125 GGGAAGCAAGATCCGCTATTGTAGCTTCAATCTGTTCCACTGCAACG-CTAGGAAAGTAAGATCC
*
36359618 GCCGTTG
189 GCTGTTG
* * ** * *
36359625 TGGCTTCAATC-TTTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCATCAATCTGTT
1 TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCCGTTGTAGCTTCAATCTGTT
* * * * *
36359689 TCGCTGCATCGCCT-GGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTTAACTGCCGGGGAA
66 CCACTGCAACG-CTAGGAAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTTAACTGCCGGGGAA
* *
36359753 GCAAGATCCGCTATTGTAGCTTCAATTTATTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTT
130 GCAAGATCCGCTATTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTT
36359818 G
195 G
* *
36359819 TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATTTGTT
1 TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCCGTTGTAGCTTCAATCTGTT
* * *
36359884 CCACTGCAATGCTAGGAAAGTAAGATCCGCTGTTGTATCTTCAATCTTTTTAACTGCCGGGGAAG
66 CCACTGCAACGCTAGGAAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTTAACTGCCGGGGAAG
* * *
36359949 CAAGATCCACTGTTATAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
131 CAAGATCCGCTATTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
*
36360014 TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTT
1 TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCCGTTGTAGCTTCAATCTGTT
* * * *
36360079 CCACTGGAACGTTAGAAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
66 CCACTGCAACGCTAGGAAAGTAAGATCCGCCGTTGTAGCTTCAATCT
36360126 ATTCCACTGC
Statistics
Matches: 443, Mismatches: 53, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
193 2 0.00
194 75 0.17
195 266 0.60
196 1 0.00
198 29 0.07
199 58 0.13
200 12 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (195 bp):
TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCCGTTGTAGCTTCAATCTGTT
CCACTGCAACGCTAGGAAAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTTAACTGCCGGGGAAG
CAAGATCCGCTATTGTAGCTTCAATCTGTTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
Found at i:36360099 original size:100 final size:100
Alignment explanation
Indices: 36359425--36360125 Score: 827
Period size: 100 Copynumber: 7.1 Consensus size: 100
36359415 TTTGCCATCA
* * * * * * * *
36359425 TAGCTTCAATCTGTTCAACTGCAATGTCGGGGAAGTAAGATTCGCCGTCGTAGCTTCAATCTATT
1 TAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTT
* * * *
36359490 CCACTACACCGCTAAGGAAAGTAAGATTCGCCGTTG
66 CCACTGCAACGCT-AGGAAAGTAAGATCCGCTGTTG
* * * **
36359526 TGGCCTCAATC-TTTTAATTGCAATGTCGGGGAAGCAAGATTCGCCATTGTAGCTTCAATCTGTT
1 TAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTT
* * * * *
36359590 CCACTACACCGCCT-GGGAAGTAAGATTCGCCGTTG
66 CCACTGCAACG-CTAGGAAAGTAAGATCCGCTGTTG
* * * * *
36359625 TGGCTTCAATC-TTTTAATTGCAATGTCGGGGAAGCGAGATTCGCCGTTGTAGCATCAATCTGTT
1 TAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTT
* * * * * *
36359689 TCGCTGCATCGCCT-GGGAAGTAAGATTCGCCGTTG
66 CCACTGCAACG-CTAGGAAAGTAAGATCCGCTGTTG
* * * *
36359724 TAGCTTCAATCTTTTTAA---C--TGCCGGGGAAGCAAGATCCGCTATTGTAGCTTCAATTTATT
1 TAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTT
36359784 CCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
66 CCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
* * *
36359819 TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATTTGTT
1 TAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTT
*
36359884 CCACTGCAATGCTAGGAAAGTAAGATCCGCTGTTG
66 CCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
* * * *
36359919 TATCTTCAATCTTTTTAA---C--TGCCGGGGAAGCAAGATCCACTGTTATAGCTTCAATCTGTT
1 TAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTT
36359979 CCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
66 CCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
* *
36360014 TAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTGTTGTAGCTTCAATCTGTT
1 TAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTT
* * *
36360079 CCACTGGAACGTTAGAAAAGTAAGATCCGCTGTTG
66 CCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
36360114 TAGCTTCAATCT
1 TAGCTTCAATCT
36360126 ATTCCACTGC
Statistics
Matches: 531, Mismatches: 56, Indels: 27
0.86 0.09 0.04
Matches are distributed among these distances:
94 2 0.00
95 163 0.31
97 2 0.00
98 2 0.00
99 121 0.23
100 230 0.43
101 11 0.02
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (100 bp):
TAGCTTCAATCTTTTTAATTGCAATGTCGGGGAAGCAAGATCCGCTGTTGTAGCTTCAATCTGTT
CCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTG
Found at i:36360269 original size:147 final size:150
Alignment explanation
Indices: 36359706--36360271 Score: 419
Period size: 145 Copynumber: 3.9 Consensus size: 150
36359696 ATCGCCTGGG
* * * * * * *
36359706 AAGTAAGATTCGCCGTTGTAGCTTCAATCTTTTTAA---C--TGCCGGGGAAGCAAGATCCGCTA
1 AAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTGAATTGCAATGTCAGGGAAGTAAGATCCACTG
* * * * * * * *
36359766 TTGTAGCTTCAATTTATTCCACTGCAACGCTAGGAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
66 TCGTAGCTTCAATCTGTTCCACCGCAACGCTAGAAAAGTAAGATCCACCGTTGTAGATTCAATCT
* ** * * *
36359831 TTTTAATTGCAATG-TCAGGG
131 ATTCCACTGCAACGCT-AGGA
* ** * * *
36359851 AAGTAAGATCCGCTGTTGTAGCTTCAAT-TTGTTCCACTGCAATG-CTAGGAAAGTAAGATCCGC
1 AAGTAAGATCCGCCGTTGTAGCTTCAATCTT-TTGAATTGCAATGTC-AGGGAAGTAAGATCCAC
* * * ** * ** * * * *
36359914 TGTTGTATCTTCAATCTTTTTAACTGC--CG---GGGAAGCAAGATCCACTGTTATAGCTTCAAT
64 TGTCGTAGCTTCAATCTGTTCCACCGCAACGCTAGAAAAGTAAGATCCACCGTTGTAGATTCAAT
*
36359974 CTGTTCCACTGCAACGCTAGGA
129 CTATTCCACTGCAACGCTAGGA
* * *
36359996 AAGTAAGATCCGCTGTTGTAGCTTCAATCTTTTTAATTGCAATGTCAGGGAAGTAAGATCCGCTG
1 AAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTGAATTGCAATGTCAGGGAAGTAAGATCCACTG
* * * * * * *
36360061 TTGTAGCTTCAATCTGTTCCACTGGAACGTTAGAAAAGTAAGATCCGCTGTTGTAGCTTCAATCT
66 TCGTAGCTTCAATCTGTTCCACCGCAACGCTAGAAAAGTAAGATCCACCGTTGTAGATTCAATCT
*
36360126 ATTCCACTGCATC-CT-GG-
131 ATTCCACTGCAACGCTAGGA
* * * * * *
36360143 AAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCATTG
1 AAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTGAATTGCAATGTCAGGGAAGTAAGATCCACTG
* * * * *
36360208 TCGTAGCTTCAATCTGTTCCGCCGCATCGCCTAG-GAAGTAAGATTCACCGTTGTGGATTCAATC
66 TCGTAGCTTCAATCTGTTCCACCGCAACG-CTAGAAAAGTAAGATCCACCGTTGTAGATTCAATC
36360272 GTTTGAATTG
Statistics
Matches: 345, Mismatches: 60, Indels: 30
0.79 0.14 0.07
Matches are distributed among these distances:
144 2 0.01
145 146 0.42
146 4 0.01
147 106 0.31
148 8 0.02
149 3 0.01
150 76 0.22
ACGTcount: A:0.25, C:0.21, G:0.22, T:0.32
Consensus pattern (150 bp):
AAGTAAGATCCGCCGTTGTAGCTTCAATCTTTTGAATTGCAATGTCAGGGAAGTAAGATCCACTG
TCGTAGCTTCAATCTGTTCCACCGCAACGCTAGAAAAGTAAGATCCACCGTTGTAGATTCAATCT
ATTCCACTGCAACGCTAGGA
Found at i:36370918 original size:44 final size:40
Alignment explanation
Indices: 36370901--36371130 Score: 213
Period size: 36 Copynumber: 5.9 Consensus size: 40
36370891 TGGTAGTTTA
36370901 GCTACACTTAT-TGATCAAGTGACAAAGTGATAA--GTG-
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTGT
**
36370937 GCTACACTT-TCTGATCAAGAAACAAAGTGATAAGTG-GT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTGT
*
36370975 --TACACTTATCTGATCAAGAGACAAAGTGATAA--GTG-
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTGT
*
36371010 G-TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTT
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT-GT-G--T
36371053 CAGCTACACTTATCTGATCAAGTG-CAAAGTGATAAGTGGTAGCCT
1 --GCTACACTTATCTGATCAAGTGACAAAGTGATAAGT-GT-G--T
36371098 AGCTACAC-TATCTGATCAAG-GAC-AAGTGATAAG
1 -GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
36371131 AGGTCATATG
Statistics
Matches: 169, Mismatches: 7, Indels: 30
0.82 0.03 0.15
Matches are distributed among these distances:
35 2 0.01
36 67 0.40
37 24 0.14
38 1 0.01
39 2 0.01
40 1 0.01
42 11 0.07
43 13 0.08
44 8 0.05
45 20 0.12
46 20 0.12
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (40 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGTGT
Found at i:36370990 original size:73 final size:77
Alignment explanation
Indices: 36370866--36371093 Score: 254
Period size: 73 Copynumber: 2.9 Consensus size: 77
36370856 TTTGAGTACT
** *
36370866 TCTGATCAAGTGACAAAGTGATAAGTGGTAGTTTAGCTACACTTAT-TGATCAAGTGACAAAGTG
1 TCTGATCAAGAAACAAAGTGATAAGTGG-AG-CT--CTACACTTATCTGATCAAGTGACAAAGTG
36370930 ATAAGTGGCTACACTT-
62 ATAAGTGG-TACACTTA
*
36370946 TCTGATCAAGAAACAAAGTGATAAGT-G-G-T-TACACTTATCTGATCAAGAGACAAAGTGATAA
1 TCTGATCAAGAAACAAAGTGATAAGTGGAGCTCTACACTTATCTGATCAAGTGACAAAGTGATAA
36371007 GTGGTACACTTA
66 GTGGTACACTTA
** *
36371019 TCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAAGTG-CAAAGT
1 TCTGATCAAGAAACAAAGTGATAAGTGG-AGC-T---CTACACTTATCTGATCAAGTGACAAAGT
36371083 GATAAGTGGTA
61 GATAAGTGGTA
36371094 GCCTAGCTAC
Statistics
Matches: 130, Mismatches: 7, Indels: 21
0.82 0.04 0.13
Matches are distributed among these distances:
72 16 0.12
73 48 0.37
74 1 0.01
75 1 0.01
76 1 0.01
77 1 0.01
78 1 0.01
79 1 0.01
80 24 0.18
81 17 0.13
82 19 0.15
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.29
Consensus pattern (77 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGAGCTCTACACTTATCTGATCAAGTGACAAAGTGATAA
GTGGTACACTTA
Found at i:36371048 original size:36 final size:37
Alignment explanation
Indices: 36370901--36371046 Score: 226
Period size: 36 Copynumber: 4.0 Consensus size: 37
36370891 TGGTAGTTTA
*
36370901 GCTACACTTAT-TGATCAAGTGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
36370937 GCTACACTT-TCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
36370973 GTTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
36371010 G-TACACTTATCTGATCAAGTGATAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
36371046 G
1 G
36371047 TAGCTTCAGC
Statistics
Matches: 102, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
35 1 0.01
36 74 0.73
37 27 0.26
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:36371064 original size:46 final size:44
Alignment explanation
Indices: 36371011--36371130 Score: 181
Period size: 46 Copynumber: 2.7 Consensus size: 44
36371001 TGATAAGTGG
*
36371011 TACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCAGC
1 TACACTTATCTGATCAAGTGA-AAAGTGATAAGTGGTAGCCT-AGC
*
36371057 TACACTTATCTGATCAAGTGCAAAGTGATAAGTGGTAGCCTAGC
1 TACACTTATCTGATCAAGTGAAAAGTGATAAGTGGTAGCCTAGC
*
36371101 TACAC-TATCTGATCAAG-GACAAGTGATAAG
1 TACACTTATCTGATCAAGTGAAAAGTGATAAG
36371131 AGGTCATATG
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
42 11 0.16
43 12 0.17
44 8 0.11
45 19 0.27
46 20 0.29
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (44 bp):
TACACTTATCTGATCAAGTGAAAAGTGATAAGTGGTAGCCTAGC
Found at i:36378559 original size:37 final size:37
Alignment explanation
Indices: 36378508--36378656 Score: 235
Period size: 37 Copynumber: 4.0 Consensus size: 37
36378498 GGTAGTTTTA
*
36378508 GCTACACTTATCTGATCAAGAGACAAAGTAATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* *
36378545 ACTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
*
36378582 GTTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
* * *
36378619 GCTACACTTATTTGATCAAGTGATAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
36378656 G
1 G
36378657 TAGCTTCAGC
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
Found at i:36378728 original size:45 final size:46
Alignment explanation
Indices: 36378619--36378742 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 46
36378609 GTGATAAGTG
* * *
36378619 GCTACACTTATTTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
36378665 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
36378710 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
36378743 AGGTCATATG
Statistics
Matches: 73, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.29
46 40 0.55
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:36384358 original size:6 final size:6
Alignment explanation
Indices: 36384347--36384375 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
36384337 CATCGAATAC
36384347 AACAAT AACAAT AACAAT AACAAT AACAA
1 AACAAT AACAAT AACAAT AACAAT AACAA
36384376 AATTTATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.17, G:0.00, T:0.14
Consensus pattern (6 bp):
AACAAT
Found at i:36393607 original size:18 final size:16
Alignment explanation
Indices: 36393573--36393608 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
36393563 CAATGTATAA
36393573 TATTTTTAATAACTTT
1 TATTTTTAATAACTTT
36393589 TATTTTATAATATACTTT
1 TATTTT-TAATA-ACTTT
36393607 TA
1 TA
36393609 AAAACCCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTTTAATAACTTT
Found at i:36395153 original size:9 final size:9
Alignment explanation
Indices: 36395140--36395196 Score: 98
Period size: 9 Copynumber: 6.4 Consensus size: 9
36395130 TTTGGTTAAA
*
36395140 AATTAACCA
1 AATTAACCG
36395149 AATTAACCG
1 AATTAACCG
36395158 AATTAACCG
1 AATTAACCG
36395167 AATTAACCG
1 AATTAACCG
36395176 AATTAACCG
1 AATTAACCG
36395185 AATTAACC-
1 AATTAACCG
36395193 AATT
1 AATT
36395197 TGAATCACTA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
8 4 0.09
9 43 0.91
ACGTcount: A:0.47, C:0.21, G:0.07, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:36395344 original size:18 final size:18
Alignment explanation
Indices: 36395304--36395347 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
36395294 TAATTTTATG
**
36395304 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
36395322 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
36395340 CTTGGGTT
1 ATTGGGTT
36395348 TAGATTGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:36396961 original size:107 final size:107
Alignment explanation
Indices: 36396815--36397037 Score: 295
Period size: 107 Copynumber: 2.1 Consensus size: 107
36396805 TGGTTGAGAT
* * * * * * * *
36396815 CCATGGCATTGTGTGATACGAAACCACTCATGGTGTTGCTTCCAGTAAGATGGAGTTTGGATTGG
1 CCATGGCATTGTGTAATACAAAACCACTCATGATATTGCTTCCAGTAAAATGAAGTCTAGATTGG
* * * *
36396880 CAGATCACGACATGAGGAGGTGTAAGTCCATGTGGCTGATAC
66 CAGATCACAACATGAGAAGGTGTAAGTCCATGTGGCTAAGAC
*
36396922 CCATGGCATTGTGTAATACAAAACCACTCACT-ATATTGCTTCTAGTAAAATGAAGTCTAGATTG
1 CCATGGCATTGTGTAATACAAAACCACTCA-TGATATTGCTTCCAGTAAAATGAAGTCTAGATTG
*
36396986 GCATATCACAACATGAGAAGGTGTAAGTCCATGTGGCTAAGAC
65 GCAGATCACAACATGAGAAGGTGTAAGTCCATGTGGCTAAGAC
*
36397029 TCATGGCAT
1 CCATGGCAT
36397038 AATATGATAG
Statistics
Matches: 100, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
107 99 0.99
108 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (107 bp):
CCATGGCATTGTGTAATACAAAACCACTCATGATATTGCTTCCAGTAAAATGAAGTCTAGATTGG
CAGATCACAACATGAGAAGGTGTAAGTCCATGTGGCTAAGAC
Found at i:36399095 original size:29 final size:29
Alignment explanation
Indices: 36399062--36399121 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
36399052 TTAGATATCA
36399062 TTAGTAATTTCTCAAACCGTTTGTTCAAC
1 TTAGTAATTTCTCAAACCGTTTGTTCAAC
**
36399091 TTAGTCTTTTCTCAAACCGTTTGTTCAAC
1 TTAGTAATTTCTCAAACCGTTTGTTCAAC
36399120 TT
1 TT
36399122 GGTCTTTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.23, C:0.22, G:0.10, T:0.45
Consensus pattern (29 bp):
TTAGTAATTTCTCAAACCGTTTGTTCAAC
Found at i:36399126 original size:29 final size:29
Alignment explanation
Indices: 36399069--36399129 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
36399059 TCATTAGTAA
36399069 TTTCTCAAACCGTTTGTTCAACTTAGTCT
1 TTTCTCAAACCGTTTGTTCAACTTAGTCT
*
36399098 TTTCTCAAACCGTTTGTTCAACTTGGTCT
1 TTTCTCAAACCGTTTGTTCAACTTAGTCT
36399127 TTT
1 TTT
36399130 GCATCCTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.18, C:0.23, G:0.11, T:0.48
Consensus pattern (29 bp):
TTTCTCAAACCGTTTGTTCAACTTAGTCT
Found at i:36399755 original size:6 final size:6
Alignment explanation
Indices: 36399744--36399780 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
36399734 CTAGAGAGCT
36399744 GCATGG GCATGG GCATGG GCATGG GCATGG GCATGG G
1 GCATGG GCATGG GCATGG GCATGG GCATGG GCATGG G
36399781 ACCTGTCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.16, C:0.16, G:0.51, T:0.16
Consensus pattern (6 bp):
GCATGG
Found at i:36409404 original size:27 final size:29
Alignment explanation
Indices: 36409374--36409431 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 29
36409364 ATTGTTCCCG
36409374 AATGAACAATA-AT-AACTAAATTT-GTCC
1 AATGAACAA-ACATAAACTAAATTTCGTCC
*
36409401 AATGAAGAAACATAAACTAAATTTCGTCC
1 AATGAACAAACATAAACTAAATTTCGTCC
36409430 AA
1 AA
36409432 GTGATGGTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
26 1 0.04
27 10 0.37
28 10 0.37
29 6 0.22
ACGTcount: A:0.50, C:0.16, G:0.09, T:0.26
Consensus pattern (29 bp):
AATGAACAAACATAAACTAAATTTCGTCC
Found at i:36422898 original size:29 final size:28
Alignment explanation
Indices: 36422865--36422957 Score: 114
Period size: 29 Copynumber: 3.2 Consensus size: 28
36422855 AAATAATTTG
*
36422865 ATCTTTATCCAGCCAATTTCAATTCTTCA
1 ATCTTTATCCAGCCAACTTCAA-TCTTCA
* *
36422894 ATCTTTATCTAGCCTACTTCGAATCTTCA
1 ATCTTTATCCAGCCAACTTC-AATCTTCA
* *
36422923 ATCTTAATCCAGCCAACTTCAAATATTCA
1 ATCTTTATCCAGCCAACTTC-AATCTTCA
36422952 ATCTTT
1 ATCTTT
36422958 TAATATAGAG
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
29 52 0.96
30 2 0.04
ACGTcount: A:0.29, C:0.27, G:0.04, T:0.40
Consensus pattern (28 bp):
ATCTTTATCCAGCCAACTTCAATCTTCA
Found at i:36429648 original size:21 final size:21
Alignment explanation
Indices: 36429622--36429662 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36429612 ATCTGCTCAA
* *
36429622 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
36429643 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
36429663 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:36436074 original size:20 final size:20
Alignment explanation
Indices: 36436024--36436074 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
36436014 AATCTAAATA
36436024 TATG-TAATATTTTAATTTGT
1 TATGTTAATATTTT-ATTTGT
* *
36436044 TAGGTTTATATTTT-TTATGT
1 TATGTTAATATTTTATT-TGT
36436064 TATGTTAATAT
1 TATGTTAATAT
36436075 CTAATATGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 2 0.08
20 15 0.60
21 8 0.32
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (20 bp):
TATGTTAATATTTTATTTGT
Found at i:36436497 original size:25 final size:25
Alignment explanation
Indices: 36436460--36436508 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
36436450 AACACTCAAA
36436460 ATTTTTAAAAGCACTTCTCAAAAGT
1 ATTTTTAAAAGCACTTCTCAAAAGT
* *
36436485 ATTTTTTACAGCACTTCTCAAAAG
1 ATTTTTAAAAGCACTTCTCAAAAG
36436509 CAATGAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (25 bp):
ATTTTTAAAAGCACTTCTCAAAAGT
Found at i:36439296 original size:17 final size:18
Alignment explanation
Indices: 36439270--36439303 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36439260 TTTTTTAAAA
*
36439270 AATTTTATA-TTATTTTT
1 AATTTAATATTTATTTTT
36439287 AATTTAATATTTATTTT
1 AATTTAATATTTATTTT
36439304 CATTTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
AATTTAATATTTATTTTT
Found at i:36447881 original size:27 final size:27
Alignment explanation
Indices: 36447837--36447890 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
36447827 ATGGCATCAT
36447837 AGATAGTCTAACAAGATGTTAAACACA
1 AGATAGTCTAACAAGATGTTAAACACA
* * *
36447864 AGATTGTCTAATAGGATGTTAAACACA
1 AGATAGTCTAACAAGATGTTAAACACA
36447891 GAATAATCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.26
Consensus pattern (27 bp):
AGATAGTCTAACAAGATGTTAAACACA
Found at i:36450227 original size:10 final size:10
Alignment explanation
Indices: 36450214--36450287 Score: 73
Period size: 10 Copynumber: 7.5 Consensus size: 10
36450204 ATATTTATTG
*
36450214 TAATTTTAAA
1 TAATTTTTAA
*
36450224 TAATTTTTAT
1 TAATTTTTAA
*
36450234 TAATTTATAA
1 TAATTTTTAA
36450244 -ATATTTTT-A
1 TA-ATTTTTAA
36450253 TAATTTCTT-A
1 TAATTT-TTAA
*
36450263 TAGTTTTTAA
1 TAATTTTTAA
36450273 TAATTTTTAA
1 TAATTTTTAA
36450283 TAATT
1 TAATT
36450288 AATTGAAAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
9 8 0.15
10 45 0.85
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:36450240 original size:19 final size:19
Alignment explanation
Indices: 36450202--36450258 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 19
36450192 TTTGTAATTC
*
36450202 AAATATTTATTGTAATTT-T
1 AAATATTT-TTATAATTTAT
36450221 AAATAATTTTTATTAATTTAT
1 AAAT-ATTTTTA-TAATTTAT
36450242 AAATATTTTTATAATTT
1 AAATATTTTTATAATTT
36450259 CTTATAGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
19 12 0.35
20 17 0.50
21 5 0.15
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AAATATTTTTATAATTTAT
Found at i:36453196 original size:25 final size:25
Alignment explanation
Indices: 36453129--36453232 Score: 101
Period size: 25 Copynumber: 4.2 Consensus size: 25
36453119 AGAACTTCAT
* *
36453129 AAGAGCCA-TAATTGGGAAG-TTCA
1 AAGAGCCATTAATCGGGAAGCTCCA
* *
36453152 AGCGAGCCATT-ATCGGGAAGCTCCG
1 A-AGAGCCATTAATCGGGAAGCTCCA
36453177 AAGAGCCATTAATCGGGAAGCTCCA
1 AAGAGCCATTAATCGGGAAGCTCCA
*
36453202 AAGAGCCATATAA-CGGGACGCT-CA
1 AAGAGCCAT-TAATCGGGAAGCTCCA
36453226 TAAGAGC
1 -AAGAGC
36453233 TGTGGTGTGT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
23 1 0.01
24 24 0.35
25 40 0.59
26 3 0.04
ACGTcount: A:0.35, C:0.22, G:0.27, T:0.16
Consensus pattern (25 bp):
AAGAGCCATTAATCGGGAAGCTCCA
Found at i:36453208 original size:49 final size:49
Alignment explanation
Indices: 36453129--36453224 Score: 115
Period size: 49 Copynumber: 2.0 Consensus size: 49
36453119 AGAACTTCAT
* * * *
36453129 AAGAGCCATAATTGGGAAGTTCAAGCGAGCCAT-TATCGGGAAGCTCCG
1 AAGAGCCATAATCGGGAAGTCCAAGAGAGCCATATAACGGGAAGCTCCG
*
36453177 AAGAGCCATTAATCGGGAAGCTCCAA-AGAGCCATATAACGGGACGCTC
1 AAGAGCCA-TAATCGGGAAG-TCCAAGAGAGCCATATAACGGGAAGCTC
36453225 ATAAGAGCTG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 8 0.20
49 17 0.43
50 15 0.38
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (49 bp):
AAGAGCCATAATCGGGAAGTCCAAGAGAGCCATATAACGGGAAGCTCCG
Found at i:36454228 original size:100 final size:103
Alignment explanation
Indices: 36454033--36454293 Score: 422
Period size: 100 Copynumber: 2.6 Consensus size: 103
36454023 TTGTATATAA
** *
36454033 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCA-CATATCT
*
36454097 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
64 TTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
36454137 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCAC-TATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACATATCTTT
36454200 GAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 GAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
36454237 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCAC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCAC
36454294 CAATAACGGT
Statistics
Matches: 149, Mismatches: 6, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
100 56 0.38
101 41 0.28
102 1 0.01
103 26 0.17
104 25 0.17
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACATATCTTT
GAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:36461135 original size:100 final size:103
Alignment explanation
Indices: 36460937--36461198 Score: 424
Period size: 100 Copynumber: 2.6 Consensus size: 103
36460927 TTGTATATAA
** *
36460937 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCA-CATATCT
36461001 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
64 TTGAAA-GTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
36461042 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCAC-TATCTTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACATATCTTT
36461105 GAAA-TGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 GAAAGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
36461142 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCAC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCAC
36461199 CAATAACGGT
Statistics
Matches: 150, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
100 59 0.39
101 28 0.19
102 11 0.07
103 1 0.01
104 26 0.17
105 25 0.17
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACATATCTTT
GAAAGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:36465071 original size:17 final size:18
Alignment explanation
Indices: 36465049--36465082 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36465039 TATTTAAAAT
36465049 TCTATTCAAAT-AATAAC
1 TCTATTCAAATCAATAAC
*
36465066 TCTATTTAAATCAATAA
1 TCTATTCAAATCAATAA
36465083 AATTAACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (18 bp):
TCTATTCAAATCAATAAC
Found at i:36476578 original size:31 final size:31
Alignment explanation
Indices: 36476543--36476604 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
36476533 AATAATAACC
36476543 CAATGACTTAAATAAAAACTTTCAAATAGTT
1 CAATGACTTAAATAAAAACTTTCAAATAGTT
* *
36476574 CAATGACTTAAATGAAAGCTTTCAAATAGTT
1 CAATGACTTAAATAAAAACTTTCAAATAGTT
36476605 TAGTGGCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (31 bp):
CAATGACTTAAATAAAAACTTTCAAATAGTT
Found at i:36480792 original size:20 final size:20
Alignment explanation
Indices: 36480758--36480799 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
36480748 AACTATTTAA
** *
36480758 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
36480778 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
36480798 AT
1 AT
36480800 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:36484806 original size:48 final size:48
Alignment explanation
Indices: 36484734--36484829 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
36484724 TTACTTTGCT
* * ** *
36484734 TAAAAACGCCTAAGTCAGCCTAACTTGCAGTGATAAATGATTCAACAG
1 TAAAAACGCCTAAGTCAGCATAACTCGCAACGATAAAGGATTCAACAG
*
36484782 TAAAAACGCGTAAGTCAGCATAACTCGCAACGATAAAGGATTCAACAG
1 TAAAAACGCCTAAGTCAGCATAACTCGCAACGATAAAGGATTCAACAG
36484830 AATTCCCTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.20
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCATAACTCGCAACGATAAAGGATTCAACAG
Found at i:36485099 original size:36 final size:36
Alignment explanation
Indices: 36485054--36485126 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
36485044 TACAATTAAA
* *
36485054 AGCTGTATACAATTAGAACTCTAAGCTTACATAATT
1 AGCTATATACAATTAGAACTCTAAGATTACATAATT
*
36485090 AGCTATATACAATTAGAACTCTAAGATTCCATAATT
1 AGCTATATACAATTAGAACTCTAAGATTACATAATT
36485126 A
1 A
36485127 TATCTTCTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (36 bp):
AGCTATATACAATTAGAACTCTAAGATTACATAATT
Found at i:36490008 original size:36 final size:36
Alignment explanation
Indices: 36489963--36490035 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
36489953 TACAATTAAA
* *
36489963 AGCTGTATACAATTAGAACTCTAAGCTTACATAATT
1 AGCTATATACAATTAGAACTCTAAGATTACATAATT
*
36489999 AGCTATATACAATTAGAACTCTAAGATTCCATAATT
1 AGCTATATACAATTAGAACTCTAAGATTACATAATT
36490035 A
1 A
36490036 TATCTTCTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (36 bp):
AGCTATATACAATTAGAACTCTAAGATTACATAATT
Found at i:36495865 original size:50 final size:50
Alignment explanation
Indices: 36495763--36496010 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
36495753 GATAATAACA
* * ** * *
36495763 TGCCAAAGCCATGTCCCAGACATGG-CTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
36495813 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
36495863 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
36495913 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
36495968 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
36496011 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 115 0.68
51 9 0.05
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:36495936 original size:100 final size:104
Alignment explanation
Indices: 36495762--36496010 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
36495752 TGATAATAAC
**
36495762 ATGCCAAAGCCATGTCCCAGACATGG-CTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
36495826 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
36495863 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
36495926 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
36495968 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36496011 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 74 0.56
101 11 0.08
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:36496126 original size:13 final size:13
Alignment explanation
Indices: 36496105--36496136 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
36496095 GCTTGGATCA
*
36496105 TCATCAAATAAAT
1 TCATAAAATAAAT
36496118 TCATAAAATAAAT
1 TCATAAAATAAAT
36496131 TCATAA
1 TCATAA
36496137 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:36496383 original size:30 final size:30
Alignment explanation
Indices: 36496348--36496405 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
36496338 CCTCGACTCT
*
36496348 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
36496378 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
36496406 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:36501217 original size:433 final size:432
Alignment explanation
Indices: 36500532--36501383 Score: 1677
Period size: 433 Copynumber: 2.0 Consensus size: 432
36500522 TGACGGAGCA
36500532 CATCAATGTCCAATATCATTTTGTATGAGGAATTTTGGAAGAAGGTGGAGTAAAGATCCTGAAAG
1 CATCAATGTCCAATATCATTTTGTATGAGGAATTTTGGAAGAAGGTGGAGTAAAGATCCTGAAAG
36500597 TTTCAAACACCGAGAATCCTGTTGATATGATGACTAAGGTTGTGATTGCAATCAAGTTTCAACTT
66 TTTCAAACACCGAGAATCCTGTTGATATGATGACTAAGGTTGTGATTGCAATCAAGTTTCAACTT
36500662 GTTTGGACTTGATCAATGTTAAAACTTGAAGGTTGGAATTTGAAGACACTATCAAATATTGTTTT
131 GTTTGGACTTGATCAATGTTAAAACTTGAAGGTTGGAATTTGAAGACACTATCAAATATTGTTTT
36500727 GTAAGGAGATTGAAGATGTGGAAATTTGTTAAGGTAGAGATTCGTTGAAATAACACAAGCTCACA
196 GTAAGGAGATTGAAGATGTGGAAATTTGTTAAGGTAGAGATTCGTTGAAATAACACAAGCTCACA
36500792 TCTAAAAAAAATACAAGGTTGTAGAGTGTTTGTAATACTATAAGTAGAGGTGGTTTCTCCACCTT
261 TCTAAAAAAAATACAAGGTTGTAGAGTGTTTGTAATACTATAAGTAGAGGTGGTTTCTCCACCTT
36500857 TAAATCATCCCAAAAAATTGTCATTTTCTTCATAATACAATTTCCCCCTTTTATTATTTGTAAAT
326 TAAATCATCCCAAAAAATTGTCATTTTCTTCATAATACAATTTCCCCCTTTTATTATTTGTAAAT
36500922 GTAGTGATATATTATGCTATTAAATTACAAACACCTTTAAAT
391 GTAGTGATATATTATGCTATTAAATTACAAACACCTTTAAAT
* *
36500964 CATCGATGTCCAATATCATTTTGTATGAGGAATTTTGGAAGAATGTGGAGTAAAGATCCTGAAAG
1 CATCAATGTCCAATATCATTTTGTATGAGGAATTTTGGAAGAAGGTGGAGTAAAGATCCTGAAAG
36501029 TTTCAAACACCGAGAATCCTGTTGATATGATGACTAAGGTTGTGATTGCAATCAAGTTTCAACTA
66 TTTCAAACACCGAGAATCCTGTTGATATGATGACTAAGGTTGTGATTGCAATCAAGTTTCAACT-
36501094 TGTTTGGACTTGATCAATGTTAAAACTTGAAGGTTGGAATTTGAAGACACTATCAAATATTGTTT
130 TGTTTGGACTTGATCAATGTTAAAACTTGAAGGTTGGAATTTGAAGACACTATCAAATATTGTTT
36501159 TGTAAGGAGATTGAAGATGTGGAAATTTGTTAAGGTAGAGATTCGTTGAAATAACACAAGCTCAC
195 TGTAAGGAGATTGAAGATGTGGAAATTTGTTAAGGTAGAGATTCGTTGAAATAACACAAGCTCAC
36501224 ATCTAAAAAAAATACAAGGTTGTAGAGTGTTTGTAATACTATAAGTAGAGGTGGTTTCTCCACCT
260 ATCTAAAAAAAATACAAGGTTGTAGAGTGTTTGTAATACTATAAGTAGAGGTGGTTTCTCCACCT
36501289 TTAAATCATCCCAAAAAATTGTCATTTTCTTCATAATACAATTTCCCCCTTTTATTATTTGTAAA
325 TTAAATCATCCCAAAAAATTGTCATTTTCTTCATAATACAATTTCCCCCTTTTATTATTTGTAAA
36501354 TGTAGTGATATATTATGCTATTAAATTACA
390 TGTAGTGATATATTATGCTATTAAATTACA
36501384 TTGTAGGGAG
Statistics
Matches: 417, Mismatches: 2, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
432 127 0.30
433 290 0.70
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.35
Consensus pattern (432 bp):
CATCAATGTCCAATATCATTTTGTATGAGGAATTTTGGAAGAAGGTGGAGTAAAGATCCTGAAAG
TTTCAAACACCGAGAATCCTGTTGATATGATGACTAAGGTTGTGATTGCAATCAAGTTTCAACTT
GTTTGGACTTGATCAATGTTAAAACTTGAAGGTTGGAATTTGAAGACACTATCAAATATTGTTTT
GTAAGGAGATTGAAGATGTGGAAATTTGTTAAGGTAGAGATTCGTTGAAATAACACAAGCTCACA
TCTAAAAAAAATACAAGGTTGTAGAGTGTTTGTAATACTATAAGTAGAGGTGGTTTCTCCACCTT
TAAATCATCCCAAAAAATTGTCATTTTCTTCATAATACAATTTCCCCCTTTTATTATTTGTAAAT
GTAGTGATATATTATGCTATTAAATTACAAACACCTTTAAAT
Found at i:36504777 original size:20 final size:20
Alignment explanation
Indices: 36504744--36504781 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
36504734 GCCAATCGAG
36504744 TCTAATTATGTTATTAAGCA
1 TCTAATTATGTTATTAAGCA
36504764 TCTATATTAT-TTATTAAG
1 TCTA-ATTATGTTATTAAG
36504782 TGTCTTACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.34, C:0.08, G:0.08, T:0.50
Consensus pattern (20 bp):
TCTAATTATGTTATTAAGCA
Found at i:36506647 original size:3 final size:3
Alignment explanation
Indices: 36506632--36506661 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
36506622 GAGGCAGTTA
*
36506632 TGG TGG AGG TGG TGG TGG TGG TGG TGG TGG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG
36506662 CGGTAGATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.03, C:0.00, G:0.67, T:0.30
Consensus pattern (3 bp):
TGG
Found at i:36521380 original size:29 final size:30
Alignment explanation
Indices: 36521337--36521415 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 30
36521327 TTTGAGCCAC
* * *
36521337 AATTAGAGTTTCATGTGTATAATTGCAC-TA
1 AATTAAAG-TTCATGTATATAATTACACATA
36521367 AATTAAAGTTCATGTATATAATTACACATTA
1 AATTAAAGTTCATGTATATAATTACACA-TA
*
36521398 AATCAAAGTTCATGTATA
1 AATTAAAGTTCATGTATA
36521416 ATTTTAAGAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 17 0.40
30 7 0.16
31 19 0.44
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (30 bp):
AATTAAAGTTCATGTATATAATTACACATA
Found at i:36521416 original size:29 final size:27
Alignment explanation
Indices: 36521352--36521418 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 27
36521342 GAGTTTCATG
* *
36521352 TGTATAATTGCACTAAATTAAAGTTCA
1 TGTATAATTACACTAAATCAAAGTTCA
36521379 TGTATATAATTACACATTAAATCAAAGTTCA
1 TG--TATAATTACAC--TAAATCAAAGTTCA
36521410 TGTATAATT
1 TGTATAATT
36521419 TTAAGATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
27 2 0.06
29 17 0.50
31 15 0.44
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (27 bp):
TGTATAATTACACTAAATCAAAGTTCA
Found at i:36521878 original size:29 final size:30
Alignment explanation
Indices: 36521841--36521899 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
36521831 TTTAGTCTAA
36521841 TGTGCAATTCTATACATGT-ACTTTGATTT
1 TGTGCAATTCTATACATGTAACTTTGATTT
* * *
36521870 TGTGGAATTTTATACATGTAATTTTGATTT
1 TGTGCAATTCTATACATGTAACTTTGATTT
36521900 GATCAAATTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.25, C:0.08, G:0.15, T:0.51
Consensus pattern (30 bp):
TGTGCAATTCTATACATGTAACTTTGATTT
Found at i:36522111 original size:30 final size:31
Alignment explanation
Indices: 36522033--36522117 Score: 79
Period size: 30 Copynumber: 2.8 Consensus size: 31
36522023 AATGTGCATG
*
36522033 ATTGAATCAAAATTAAAGTTTCA--TGTATAC
1 ATTGAAAC-AAATTAAAGTTTCATGTGTATAC
* *
36522063 ATTTAAACACAATCAAAGTTTCATGTGTATA-
1 ATTGAAACA-AATTAAAGTTTCATGTGTATAC
* *
36522094 ATTGCACCAAATTAAAG-TTCATGT
1 ATTGAAACAAATTAAAGTTTCATGT
36522118 ATCAAATTAC
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
29 8 0.18
30 25 0.56
31 6 0.13
32 6 0.13
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (31 bp):
ATTGAAACAAATTAAAGTTTCATGTGTATAC
Found at i:36526741 original size:54 final size:54
Alignment explanation
Indices: 36526683--36526787 Score: 131
Period size: 54 Copynumber: 1.9 Consensus size: 54
36526673 AGACAGCCCG
* * * *
36526683 CCAGTCAGC-TGTTCATCAAACAGTCTACTAGTCACCTGTTTGTGAGACAGTTTT
1 CCAGTCA-CTTGTTCATCAAACAATCTACCAGACACCTGTTCGTGAGACAGTTTT
* * *
36526737 CCAGTCACTTGTTCGTCAAGCAATCTGCCAGACACCTGTTCGTGAGACAGT
1 CCAGTCACTTGTTCATCAAACAATCTACCAGACACCTGTTCGTGAGACAGT
36526788 CCGCTAGCTG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.02
54 42 0.98
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (54 bp):
CCAGTCACTTGTTCATCAAACAATCTACCAGACACCTGTTCGTGAGACAGTTTT
Found at i:36529307 original size:31 final size:31
Alignment explanation
Indices: 36529271--36529432 Score: 136
Period size: 31 Copynumber: 5.2 Consensus size: 31
36529261 GAAAAGGTTC
36529271 GTATATGGTTGA-ACATTGCTGAAAATAATTT
1 GTATATGGTT-ATACATTGCTGAAAATAATTT
* * * * *
36529302 TTATATGGTTATTCATTTCTGAAATTAAATT
1 GTATATGGTTATACATTGCTGAAAATAATTT
* *
36529333 GTATAT-GTATATA-AGTTGCTG-AAATGATTC
1 GTATATGGT-TATACA-TTGCTGAAAATAATTT
36529363 GTATATGGTTGA-ACATTGCTGAAAATAATTTT
1 GTATATGGTT-ATACATTGCTGAAAATAA-TTT
* * * *
36529395 TTATATGGTTATACATTGTTGAAATTAAATT
1 GTATATGGTTATACATTGCTGAAAATAATTT
*
36529426 GTTTATG
1 GTATATG
36529433 AATATAGGAT
Statistics
Matches: 102, Mismatches: 20, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
30 23 0.23
31 54 0.53
32 25 0.25
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (31 bp):
GTATATGGTTATACATTGCTGAAAATAATTT
Found at i:36529482 original size:31 final size:31
Alignment explanation
Indices: 36529442--36529561 Score: 118
Period size: 31 Copynumber: 3.9 Consensus size: 31
36529432 GAATATAGGA
36529442 TGCCGAATTTGATTTGTATATGATTATACAT
1 TGCCGAATTTGATTTGTATATGATTATACAT
* * * *
36529473 TGCCAAATTTGATTTTTATATGGTTATATAT
1 TGCCGAATTTGATTTGTATATGATTATACAT
* * * *
36529504 TGTCGAA-TTGCTTGGTATATTGA-TATTCAT
1 TGCCGAATTTGATTTGTATA-TGATTATACAT
* * *
36529534 TGTCGAATTTGATTCGTATATGAATATA
1 TGCCGAATTTGATTTGTATATGATTATA
36529562 TATATTGCTA
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
30 24 0.34
31 47 0.66
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (31 bp):
TGCCGAATTTGATTTGTATATGATTATACAT
Found at i:36529489 original size:93 final size:93
Alignment explanation
Indices: 36529219--36529507 Score: 293
Period size: 93 Copynumber: 3.1 Consensus size: 93
36529209 TTGTTTTTGA
* * * * * * * * *
36529219 TTATACATTG-CTGATATTGAATTTTATAT-TACATAAGTTGCCGAAAAGGTTCGTATATGGTTG
1 TTATACATTGTCTGAAATTAAATTGTATATGAATATAAGATGCCGAAATGATTCGTATATGATTG
*
36529282 AACATTGCTGAAAATAATTTTTATATGG
66 AACATTGCTCAAAATAATTTTTATATGG
* * * * *
36529310 TTATTCATT-TCTGAAATTAAATTGTATATGTATATAAGTTGCTGAAATGATTCGTATATGGTTG
1 TTATACATTGTCTGAAATTAAATTGTATATGAATATAAGATGCCGAAATGATTCGTATATGATTG
*
36529374 AACATTGCTGAAAATAATTTTTTATATGG
66 AACATTGCTCAAAATAA-TTTTTATATGG
* * * *
36529403 TTATACATTGT-TGAAATTAAATTGTTTATGAATATAGGATGCCGAATTTGATTTGTATATGATT
1 TTATACATTGTCTGAAATTAAATTGTATATGAATATAAGATGCCGAA-ATGATTCGTATATGATT
* *
36529467 -ATACATTGC-CAAATTTGATTTTTATATGG
65 GA-ACATTGCTCAAA-ATAATTTTTATATGG
*
36529496 TTATATATTGTC
1 TTATACATTGTC
36529508 GAATTGCTTG
Statistics
Matches: 169, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
91 24 0.14
92 47 0.28
93 74 0.44
94 24 0.14
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (93 bp):
TTATACATTGTCTGAAATTAAATTGTATATGAATATAAGATGCCGAAATGATTCGTATATGATTG
AACATTGCTCAAAATAATTTTTATATGG
Found at i:36535588 original size:42 final size:42
Alignment explanation
Indices: 36535531--36535646 Score: 187
Period size: 42 Copynumber: 2.8 Consensus size: 42
36535521 GTTTACAAAC
36535531 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
* * *
36535573 AAAAAAGCCGCTAAAGACCATGTTCTTTAGAGGCGCTTAGAG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
* *
36535615 AAAAACGCCGCTAAAGATCATGTTTTTTAGCG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCG
36535647 TCTTTAGCGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAGAA
Found at i:36535721 original size:40 final size:39
Alignment explanation
Indices: 36535646--36535789 Score: 162
Period size: 42 Copynumber: 3.5 Consensus size: 39
36535636 GTTTTTTAGC
36535646 GTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACAT
1 GTCTTTAGCGGCG-TTTTTT-TAAGCGCCGCTAAAGAACAT
*
36535687 AGTCTTTAGCGGCGTTCTTTTAAGCGCCGCTAAAGAACAT
1 -GTCTTTAGCGGCGTTTTTTTAAGCGCCGCTAAAGAACAT
* * * * *
36535727 GATTTTTAGTGGCTTTTTTCTTTAAGTGCCTCTAAAGAACAT
1 G-TCTTTAGCGGC-GTTTT-TTTAAGCGCCGCTAAAGAACAT
*
36535769 GGTCTTTAGCGGCATTTTTTT
1 -GTCTTTAGCGGCGTTTTTTT
36535790 TTCTAAACGT
Statistics
Matches: 88, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
39 1 0.01
40 32 0.36
41 12 0.14
42 42 0.48
43 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.39
Consensus pattern (39 bp):
GTCTTTAGCGGCGTTTTTTTAAGCGCCGCTAAAGAACAT
Found at i:36538808 original size:19 final size:18
Alignment explanation
Indices: 36538771--36538805 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36538761 AAGGAATTCA
*
36538771 AAAATTATCATGTTTAAG
1 AAAATAATCATGTTTAAG
*
36538789 AAAATAATCATTTTTAA
1 AAAATAATCATGTTTAA
36538806 AGAGTATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.40
Consensus pattern (18 bp):
AAAATAATCATGTTTAAG
Found at i:36555412 original size:33 final size:35
Alignment explanation
Indices: 36555374--36555470 Score: 98
Period size: 33 Copynumber: 2.8 Consensus size: 35
36555364 ATTGTTATAT
36555374 TTAAATATTTAAAATATATTTTATATATT-C-TAA
1 TTAAATATTTAAAATATATTTTATATATTGCTTAA
* *
36555407 TTAAAT-TTTATAAATA-ATTAATATTTATTGCTTAA
1 TTAAATATTTA-AAATATATT-TTATATATTGCTTAA
36555442 --AAATATTTAAAATTTATATTTTATATATT
1 TTAAATATTTAAAA--TATATTTTATATATT
36555471 AAAATATTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
32 7 0.13
33 25 0.48
34 5 0.10
35 12 0.23
36 3 0.06
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.53
Consensus pattern (35 bp):
TTAAATATTTAAAATATATTTTATATATTGCTTAA
Done.