Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 144 of 172
Found at i:41648682 original size:50 final size:50
Alignment explanation
Indices: 41648559--41648752 Score: 271
Period size: 51 Copynumber: 3.8 Consensus size: 50
41648549 ATTTGGGTAA
*
41648559 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAG-ATG
*
41648610 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * * *
41648660 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
41648710 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
41648753 TGTTATTATC
Statistics
Matches: 127, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
50 48 0.38
51 79 0.62
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:41648751 original size:101 final size:101
Alignment explanation
Indices: 41648571--41648752 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 101
41648561 AGATCCCATG
* * **
41648571 TAAGACCATGTCTGGGACATGGCATTGGCACCGAGAATGAGAGGTCCCATGTAAGACCATGTCTG
1 TAAGACCATGTCTGGGACATGGCATGGGCACCGAGAACGAGACATCCCATGTAAGACCATGTCTG
41648636 GGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
66 GGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
41648672 TAAGACCATGTCTGGGACATGGCATGGGCACC-A-ACACGAGAACATCCCATGTAAGACCATGTC
1 TAAGACCATGTCTGGGACATGGCATGGGCACCGAGA-ACGAG-ACATCCCATGTAAGACCATGTC
*
41648735 TGGGACATGGCTTTGGCA
64 TGGGACATGGCGTTGGCA
41648753 TGTTATTATC
Statistics
Matches: 74, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
99 1 0.01
100 5 0.07
101 68 0.92
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.20
Consensus pattern (101 bp):
TAAGACCATGTCTGGGACATGGCATGGGCACCGAGAACGAGACATCCCATGTAAGACCATGTCTG
GGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTA
Found at i:41655761 original size:29 final size:30
Alignment explanation
Indices: 41655702--41655759 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
41655692 TCCGAGCCTT
*
41655702 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
41655732 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
41655760 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:41655989 original size:13 final size:13
Alignment explanation
Indices: 41655971--41656002 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
41655961 TTTCCAGCAA
41655971 TTATGAATTTATT
1 TTATGAATTTATT
41655984 TTATGAATTTATT
1 TTATGAATTTATT
*
41655997 TGATGA
1 TTATGA
41656003 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:41656157 original size:50 final size:50
Alignment explanation
Indices: 41656097--41656339 Score: 371
Period size: 50 Copynumber: 4.8 Consensus size: 50
41656087 ATTGGGGTAA
*
41656097 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
41656147 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCA-TGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
41656196 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
41656246 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGGCACCAACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCAT-TGGCACCGAGATG
** *
41656297 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
41656340 TGTTATTATC
Statistics
Matches: 176, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
49 48 0.27
50 82 0.47
51 16 0.09
52 30 0.17
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:41656268 original size:99 final size:100
Alignment explanation
Indices: 41656097--41656339 Score: 380
Period size: 99 Copynumber: 2.4 Consensus size: 100
41656087 ATTGGGGTAA
* *
41656097 AGAGGTCCCATGTAAGACCATGTCTGGGACATGACATTGGCACCGAGATGAGAGGTCCCATGTAA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATATAA
* *
41656162 GACCATGTCTGGGACATGGCAT-GGCACCGAGATG
66 GACCATGTCTGGGACATGGCATGGGCACCAACATG
* *
41656196 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCTATAA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATATAA
41656261 GACCATGTCTGGGACATGGCATGGGGCACCAACATG
66 GACCATGTCTGGGACATGGCAT-GGGCACCAACATG
** *
41656297 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
41656340 TGTTATTATC
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
99 83 0.63
101 12 0.09
102 37 0.28
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (100 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCATATAA
GACCATGTCTGGGACATGGCATGGGCACCAACATG
Found at i:41657316 original size:51 final size:52
Alignment explanation
Indices: 41657251--41657362 Score: 185
Period size: 52 Copynumber: 2.2 Consensus size: 52
41657241 TGCTTAGATT
*
41657251 CTTAA-TGAGTCTATTTTCTGTAGAAAC-AGTAAGAACTTCATATGAAATTC
1 CTTAAGTGAGTCTATTTTCTGTAGAAACAAGTAAGAACTTCATATGAAAATC
41657301 CTTAAGTGAGTCTATTTTCTGTAGAAACAAGTAAGAACTTCATATGAAAATC
1 CTTAAGTGAGTCTATTTTCTGTAGAAACAAGTAAGAACTTCATATGAAAATC
41657353 C-TACAGTGAG
1 CTTA-AGTGAG
41657363 AAAACTTATT
Statistics
Matches: 58, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
50 5 0.09
51 24 0.41
52 29 0.50
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (52 bp):
CTTAAGTGAGTCTATTTTCTGTAGAAACAAGTAAGAACTTCATATGAAAATC
Found at i:41658489 original size:22 final size:22
Alignment explanation
Indices: 41658443--41658489 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
41658433 TCTCCAATTA
*
41658443 TTAGCACATTAGTACTCTCCGT
1 TTAGCACATTAGTACTCTCCAT
* * *
41658465 TTAGCACATTCGTGCTCTCTAT
1 TTAGCACATTAGTACTCTCCAT
41658487 TTA
1 TTA
41658490 ATAATGCATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.21, C:0.26, G:0.13, T:0.40
Consensus pattern (22 bp):
TTAGCACATTAGTACTCTCCAT
Found at i:41663775 original size:20 final size:20
Alignment explanation
Indices: 41663719--41663785 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 20
41663709 CATCAACACA
41663719 AGATCAAGAATGGAAAACATG
1 AGATCAAGAA-GGAAAACATG
* * * **
41663740 ATATAAAGCATTAAAACATG
1 AGATCAAGAAGGAAAACATG
* *
41663760 AGATCAAGTAGGAAAAGAT-
1 AGATCAAGAAGGAAAACATG
41663779 AGATCAA
1 AGATCAA
41663786 AGTTAAGAAA
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
19 7 0.20
20 21 0.60
21 7 0.20
ACGTcount: A:0.54, C:0.09, G:0.19, T:0.18
Consensus pattern (20 bp):
AGATCAAGAAGGAAAACATG
Found at i:41664691 original size:44 final size:44
Alignment explanation
Indices: 41664632--41664723 Score: 175
Period size: 44 Copynumber: 2.1 Consensus size: 44
41664622 AGAATTATGC
41664632 ACTAAAGTTAGTAAATTATAACTCTCTTTTGGAGAGTTATCACT
1 ACTAAAGTTAGTAAATTATAACTCTCTTTTGGAGAGTTATCACT
*
41664676 ACTAAAGTTAGTAAATTATAACTCTCTTTTGGAGAGTTGTCACT
1 ACTAAAGTTAGTAAATTATAACTCTCTTTTGGAGAGTTATCACT
41664720 ACTA
1 ACTA
41664724 CTTTAGTTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.34, C:0.14, G:0.14, T:0.38
Consensus pattern (44 bp):
ACTAAAGTTAGTAAATTATAACTCTCTTTTGGAGAGTTATCACT
Found at i:41667440 original size:3 final size:3
Alignment explanation
Indices: 41667434--41667458 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
41667424 TCTGTTCCAC
41667434 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
41667459 TTTTTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:41668977 original size:28 final size:28
Alignment explanation
Indices: 41668945--41669000 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
41668935 TCTATTGACT
*
41668945 GTTCTTATGAACAAAGTTGACTGCAAAA
1 GTTCTTATGAACAAAGTTAACTGCAAAA
41668973 GTTCTTATGAACAAAGTTAACTGCAAAA
1 GTTCTTATGAACAAAGTTAACTGCAAAA
41669001 AGCTATCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (28 bp):
GTTCTTATGAACAAAGTTAACTGCAAAA
Found at i:41671167 original size:21 final size:20
Alignment explanation
Indices: 41671143--41671189 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
41671133 AAATTAAATT
41671143 TTAAAATTTGAAATATAAAAA
1 TTAAAATTTGAAA-ATAAAAA
*
41671164 TTAAAAATTTTAAAATAAAAA
1 TT-AAAATTTGAAAATAAAAA
41671185 -TAAAA
1 TTAAAA
41671190 AAAGGAGGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.17
20 1 0.04
21 9 0.38
22 10 0.42
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (20 bp):
TTAAAATTTGAAAATAAAAA
Found at i:41671190 original size:21 final size:22
Alignment explanation
Indices: 41671145--41671191 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
41671135 ATTAAATTTT
*
41671145 AAAATTTGAAATATAAAAATTA
1 AAAATTTGAAATATAAAAATAA
*
41671167 AAAATTTTAAA-ATAAAAATAA
1 AAAATTTGAAATATAAAAATAA
41671188 AAAA
1 AAAA
41671192 AGGAGGGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (22 bp):
AAAATTTGAAATATAAAAATAA
Found at i:41674408 original size:41 final size:41
Alignment explanation
Indices: 41674363--41674442 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
41674353 TATTTGTTTC
*
41674363 CTATTACCTCAACTGATATTT-TGATGAGTCATATTTATTGT
1 CTATTACCTCAACCGAT-TTTGTGATGAGTCATATTTATTGT
* **
41674404 CTATTATCTCAACCGATTTTGTGATGAGTTGTATTTATT
1 CTATTACCTCAACCGATTTTGTGATGAGTCATATTTATT
41674443 ACATCTTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 3 0.09
41 31 0.91
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (41 bp):
CTATTACCTCAACCGATTTTGTGATGAGTCATATTTATTGT
Found at i:41684325 original size:16 final size:16
Alignment explanation
Indices: 41684304--41684346 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
41684294 GTGAAATTTA
41684304 AATATTTTATTAAAAT
1 AATATTTTATTAAAAT
*
41684320 AATATTTTAATTAATAT
1 AATATTTT-ATTAAAAT
*
41684337 CAT-TTTTATT
1 AATATTTTATT
41684347 TAATAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 12 0.50
17 9 0.38
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
AATATTTTATTAAAAT
Found at i:41684625 original size:19 final size:22
Alignment explanation
Indices: 41684601--41684649 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
41684591 GCGCGAATTA
41684601 ATTTTTTAT-ATT-AA-AAAAT
1 ATTTTTTATGATTAAATAAAAT
*
41684620 ATTTTTT-TGTTTAAATAAAAT
1 ATTTTTTATGATTAAATAAAAT
41684641 ATTTTTTAT
1 ATTTTTTAT
41684650 TTTTATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 1 0.04
19 9 0.36
20 2 0.08
21 12 0.48
22 1 0.04
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
ATTTTTTATGATTAAATAAAAT
Found at i:41684659 original size:21 final size:22
Alignment explanation
Indices: 41684614--41684666 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
41684604 TTTTATATTA
41684614 AAAAATATTTTTTTGTTTAAAT
1 AAAAATATTTTTTTGTTTAAAT
* *
41684636 -AAAATATTTTTTAT-TTTTATT
1 AAAAATATTTTTT-TGTTTAAAT
41684657 AAAAATATTT
1 AAAAATATTT
41684667 AAATATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 17 0.63
22 10 0.37
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
AAAAATATTTTTTTGTTTAAAT
Found at i:41684997 original size:21 final size:22
Alignment explanation
Indices: 41684961--41685018 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
41684951 CCATCCACCA
*
41684961 AAAGAGAGAAAGAAAAG-AG-AG
1 AAAGAAAGAAA-AAAAGAAGAAG
41684982 AAAGGAGAAGAAAAAAAGAAGAAG
1 AAA-GA-AAGAAAAAAAGAAGAAG
41685006 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
41685019 GGTAATGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
21 3 0.09
22 15 0.47
23 9 0.28
24 5 0.16
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (22 bp):
AAAGAAAGAAAAAAAGAAGAAG
Found at i:41684999 original size:14 final size:14
Alignment explanation
Indices: 41684969--41685015 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
41684959 CAAAAGAGAG
* *
41684969 AAAGAA-AAGAGAG
1 AAAGAAGAAGAAAA
*
41684982 AAAGGAGAAGAAAA
1 AAAGAAGAAGAAAA
*
41684996 AAAGAAGAAGAAAG
1 AAAGAAGAAGAAAA
41685010 AAAGAA
1 AAAGAA
41685016 AAAGGTAATG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 5 0.18
14 23 0.82
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (14 bp):
AAAGAAGAAGAAAA
Found at i:41685261 original size:60 final size:60
Alignment explanation
Indices: 41685182--41685300 Score: 211
Period size: 60 Copynumber: 2.0 Consensus size: 60
41685172 TTGCTTTTTA
* * *
41685182 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTTG
41685242 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTT
41685301 AGTTTAGTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.54
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTTGTGTTTG
Found at i:41685892 original size:21 final size:22
Alignment explanation
Indices: 41685854--41685894 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
41685844 TTGACAAATG
* *
41685854 TTTTTATTAAAATTATTTAAAA
1 TTTTAATTAAAATAATTTAAAA
41685876 TTTTAATTAAAA-AATTTAA
1 TTTTAATTAAAATAATTTAA
41685895 CACCCACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTTAATTAAAATAATTTAAAA
Found at i:41690544 original size:8 final size:8
Alignment explanation
Indices: 41690531--41690558 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
41690521 AAAGTTCCCA
41690531 TGTTTCAC
1 TGTTTCAC
41690539 TGTTTCAC
1 TGTTTCAC
41690547 TGTTTCAC
1 TGTTTCAC
41690555 TGTT
1 TGTT
41690559 CGACAGTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.11, C:0.21, G:0.14, T:0.54
Consensus pattern (8 bp):
TGTTTCAC
Found at i:41694700 original size:29 final size:30
Alignment explanation
Indices: 41694641--41694698 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
41694631 TCCGAGCCTT
*
41694641 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
41694671 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
41694699 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:41694928 original size:13 final size:13
Alignment explanation
Indices: 41694910--41694941 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
41694900 TTTCCAGCAA
41694910 TTATGAATTTATT
1 TTATGAATTTATT
41694923 TTATGAATTTATT
1 TTATGAATTTATT
*
41694936 TGATGA
1 TTATGA
41694942 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:41695149 original size:50 final size:50
Alignment explanation
Indices: 41695036--41695277 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
41695026 ATTTGGGTAA
* * *
41695036 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
41695092 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
41695142 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
41695192 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
41695242 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
41695278 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:41695225 original size:100 final size:103
Alignment explanation
Indices: 41695036--41695285 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
41695026 ATTTGGGTAA
41695036 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
41695101 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
41695142 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
41695204 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
41695242 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
41695286 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:41700261 original size:50 final size:50
Alignment explanation
Indices: 41700194--41700433 Score: 390
Period size: 50 Copynumber: 4.8 Consensus size: 50
41700184 AAGATGTATT
41700194 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
41700244 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
*
41700294 GGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
* * * * *
41700344 GGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACATGAGAA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG-A
** *
41700395 CATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
41700434 TGTTATTATC
Statistics
Matches: 176, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
50 142 0.81
51 34 0.19
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.20
Consensus pattern (50 bp):
GGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGA
Found at i:41702123 original size:24 final size:23
Alignment explanation
Indices: 41702096--41702150 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 23
41702086 TAATGGCAAA
*
41702096 AAATATATATAACTT-TTTTTATAT
1 AAATATA-ATAAATTATTTTT-TAT
41702120 AAATA-AATAAATTATTTTTTAT
1 AAATATAATAAATTATTTTTTAT
41702142 AACATATAA
1 AA-ATATAA
41702151 CATCGTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 11 0.41
23 9 0.33
24 7 0.26
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (23 bp):
AAATATAATAAATTATTTTTTAT
Found at i:41704210 original size:41 final size:41
Alignment explanation
Indices: 41704153--41704390 Score: 218
Period size: 41 Copynumber: 5.8 Consensus size: 41
41704143 TTTTTTAAAC
* * *
41704153 CTTTACCGGCGTTTTTATCTAAGCGCCACTAATACT-TGGGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCT-GGT
*
41704194 CTTTAGCGGCGTTTTTATCTGAA-CGCCGCTAATGCTCTGGC
1 CTTTAGCGGCGTTTTTATCT-AAGCGCCGCTAATGCTCTGGT
* *
41704235 CTTTGGCGGCGTTTTTATATAAGCGCCGCTAATGCTC-GGAT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCTGG-T
* * * * *
41704276 CTTTAGCGGCGTTTTTAACTGAGCGCCACTAATTCTCTTGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCTGGT
* * * * * *
41704317 CTTCAGCTGCGTTTGTAGCTAAGCGCCGCTAATG-TAT-TT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCTGGT
*
41704356 ACCTTTAGCGGCGTTTTTGT-TGAAGCGCCGCTAAT
1 --CTTTAGCGGCGTTTTTATCT-AAGCGCCGCTAAT
41704391 AGTAACAAAA
Statistics
Matches: 161, Mismatches: 28, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
39 1 0.01
40 7 0.04
41 149 0.93
42 4 0.02
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCTGGT
Found at i:41704289 original size:82 final size:82
Alignment explanation
Indices: 41704159--41704390 Score: 252
Period size: 82 Copynumber: 2.8 Consensus size: 82
41704149 AAACCTTTAC
* * *
41704159 CGGCGTTTTTATCTAAGCGCCACTAATACTTGGGTCTTTAGCGGCGTTTTTATCTGAACGCCGCT
1 CGGCGTTTTTATCTAAGCGCCGCTAATGCTTGGATCTTTAGCGGCGTTTTTATCTGAACGCCGCT
**
41704224 AATGCTCTGGCCTTTGG
66 AATGCTCTGGCCTTCAG
* * * * *
41704241 CGGCGTTTTTATATAAGCGCCGCTAATGCTCGGATCTTTAGCGGCGTTTTTAACTGAGCGCCACT
1 CGGCGTTTTTATCTAAGCGCCGCTAATGCTTGGATCTTTAGCGGCGTTTTTATCTGAACGCCGCT
* * *
41704306 AATTCTCTTGTCTTCAG
66 AATGCTCTGGCCTTCAG
* * * ** * *
41704323 CTGCGTTTGTAGCTAAGCGCCGCTAATG-TATTTACCTTTAGCGGCGTTTTTGT-TGAAGCGCCG
1 CGGCGTTTTTATCTAAGCGCCGCTAATGCT-TGGATCTTTAGCGGCGTTTTTATCTGAA-CGCCG
41704386 CTAAT
64 CTAAT
41704391 AGTAACAAAA
Statistics
Matches: 123, Mismatches: 25, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
81 4 0.03
82 119 0.97
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (82 bp):
CGGCGTTTTTATCTAAGCGCCGCTAATGCTTGGATCTTTAGCGGCGTTTTTATCTGAACGCCGCT
AATGCTCTGGCCTTCAG
Found at i:41704319 original size:123 final size:123
Alignment explanation
Indices: 41704153--41704390 Score: 286
Period size: 123 Copynumber: 1.9 Consensus size: 123
41704143 TTTTTTAAAC
* * * *
41704153 CTTTACCGGCGTTTTTATCTAAGCGCCACTAATACTTGGGTCTTTAGCGGCGTTTTTATCTGAA-
1 CTTTACCGGCGTTTTTAACTAAGCGCCACTAATACTTGGGTCTTCAGCGGCGTTTGTAGCT-AAG
* *
41704217 CGCCGCTAATGCT-CTGGCCTTTGGCGGCGTTTTTATAT-AAGCGCCGCTAATGCTCGGAT
65 CGCCGCTAATG-TACTGACCTTTAGCGGCGTTTTTAT-TGAAGCGCCGCTAATGCTCGGAT
* * * * *
41704276 CTTTAGCGGCGTTTTTAACTGAGCGCCACTAATTCTCT-TGTCTTCAGCTGCGTTTGTAGCTAAG
1 CTTTACCGGCGTTTTTAACTAAGCGCCACTAATACT-TGGGTCTTCAGCGGCGTTTGTAGCTAAG
* * *
41704340 CGCCGCTAATGTATTTACCTTTAGCGGCGTTTTTGTTGAAGCGCCGCTAAT
65 CGCCGCTAATGTACTGACCTTTAGCGGCGTTTTTATTGAAGCGCCGCTAAT
41704391 AGTAACAAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
122 4 0.04
123 92 0.95
124 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (123 bp):
CTTTACCGGCGTTTTTAACTAAGCGCCACTAATACTTGGGTCTTCAGCGGCGTTTGTAGCTAAGC
GCCGCTAATGTACTGACCTTTAGCGGCGTTTTTATTGAAGCGCCGCTAATGCTCGGAT
Found at i:41705721 original size:29 final size:27
Alignment explanation
Indices: 41705660--41705722 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 27
41705650 GGGGAATTTA
*
41705660 AGGGTTAAGGGTTATGCTTTAGGGGTT
1 AGGGTTAAGGGTTATGATTTAGGGGTT
*
41705687 AGGGGTTAGTGGGTTATGGATTT-GGGGTTT
1 A-GGGTTA-AGGGTTAT-GATTTAGGGG-TT
41705717 AGGGTT
1 AGGGTT
41705723 TCAACGGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
27 1 0.03
28 6 0.20
29 16 0.53
30 7 0.23
ACGTcount: A:0.16, C:0.02, G:0.44, T:0.38
Consensus pattern (27 bp):
AGGGTTAAGGGTTATGATTTAGGGGTT
Found at i:41709702 original size:66 final size:65
Alignment explanation
Indices: 41709594--41709759 Score: 217
Period size: 66 Copynumber: 2.5 Consensus size: 65
41709584 GAGCAAATTA
* * * * *
41709594 CACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAGAACTCCA
1 CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAAGTTCAACAAAAG-TATGAAGAACTCCA
41709658 G
65 G
*
41709659 CTACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAAGTTCAACGAAAGTATGAAGAACTCCA
1 C-ACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAAGTTCAACAAAAGTATGAAGAACTCCA
41709724 G
65 G
* * *
41709725 CAGCAGCTTAAAGCAGATGCGGCAGCAAGAGAAGC
1 CA-CAACTTAAAGCAGATGCAGCAGCGAGAGAAGC
41709760 AGAGGCGGCA
Statistics
Matches: 89, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
65 2 0.02
66 83 0.93
67 4 0.04
ACGTcount: A:0.41, C:0.20, G:0.26, T:0.13
Consensus pattern (65 bp):
CACAACTTAAAGCAGATGCAGCAGCGAGAGAAGCTGAAGTTCAACAAAAGTATGAAGAACTCCAG
Found at i:41709761 original size:21 final size:21
Alignment explanation
Indices: 41709735--41709807 Score: 74
Period size: 21 Copynumber: 3.5 Consensus size: 21
41709725 CAGCAGCTTA
*
41709735 AAGCAGATGCGGCAGCAAGAG
1 AAGCAGAGGCGGCAGCAAGAG
*
41709756 AAGCAGAGGCGGCAGCGAGAG
1 AAGCAGAGGCGGCAGCAAGAG
* * ** * *
41709777 AAGTACAGGTTGAAGCAAGGG
1 AAGCAGAGGCGGCAGCAAGAG
41709798 AAGCAGAGGC
1 AAGCAGAGGC
41709808 TATAGCGAGG
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.41, T:0.05
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCAAGAG
Found at i:41709815 original size:42 final size:42
Alignment explanation
Indices: 41709748--41709847 Score: 119
Period size: 42 Copynumber: 2.4 Consensus size: 42
41709738 CAGATGCGGC
* * *
41709748 AGCAAGAGAAGCAGAGGCGGCAGCGAGAGAAGTACAGGTTGA
1 AGCAAGGGAAGCAGAGGCGACAGCGAGAGAAGTACAGGCTGA
* * * * *
41709790 AGCAAGGGAAGCAGAGGCTATAGCGAGGGAAGTAGAGGCTGC
1 AGCAAGGGAAGCAGAGGCGACAGCGAGAGAAGTACAGGCTGA
*
41709832 AGCGAGGGAAGCAGAG
1 AGCAAGGGAAGCAGAG
41709848 CATCGTCAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.36, C:0.14, G:0.43, T:0.07
Consensus pattern (42 bp):
AGCAAGGGAAGCAGAGGCGACAGCGAGAGAAGTACAGGCTGA
Found at i:41709818 original size:21 final size:21
Alignment explanation
Indices: 41709794--41709847 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
41709784 GGTTGAAGCA
*
41709794 AGGGAAGCAGAGGCTATAGCG
1 AGGGAAGCAGAGGCTACAGCG
* *
41709815 AGGGAAGTAGAGGCTGCAGCG
1 AGGGAAGCAGAGGCTACAGCG
41709836 AGGGAAGCAGAG
1 AGGGAAGCAGAG
41709848 CATCGTCAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.46, T:0.07
Consensus pattern (21 bp):
AGGGAAGCAGAGGCTACAGCG
Found at i:41710232 original size:43 final size:43
Alignment explanation
Indices: 41710185--41710306 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
41710175 AGGTGTTAGC
* *
41710185 CTTTAGTGGCGTTTTTGGTAAAAGCGCCGCTAAATATAAGGGT
1 CTTTAGCGGCGTTTTTGGTAAAAGCGCCGCTAAAGATAAGGGT
* ** * *
41710228 CTTTAGCGGCGTTTGTGGTCGAAGCGCCGCTAGAGATCAGGGT
1 CTTTAGCGGCGTTTTTGGTAAAAGCGCCGCTAAAGATAAGGGT
* * *
41710271 CTTTTGCGGCGTTTGTAGG-AAAAGTGCCGCTAAAGA
1 CTTTAGCGGCGTTT-TTGGTAAAAGCGCCGCTAAAGA
41710307 CCCTAATCTT
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 62 0.97
44 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (43 bp):
CTTTAGCGGCGTTTTTGGTAAAAGCGCCGCTAAAGATAAGGGT
Found at i:41710317 original size:43 final size:43
Alignment explanation
Indices: 41710270--41710413 Score: 198
Period size: 43 Copynumber: 3.3 Consensus size: 43
41710260 GAGATCAGGG
* * * * *
41710270 TCTTTTGCGGCGTTTGTAGGAAAAGTGCCGCTAAAGACCCTAA
1 TCTTTAGCGGCGCTTGTAGCAAAAATGCCGCTAAAGACCCTGA
* *
41710313 TCTTTAGCGGCGCTTGTCGCAAAAATGCCACTAAAGACCCTGA
1 TCTTTAGCGGCGCTTGTAGCAAAAATGCCGCTAAAGACCCTGA
* * *
41710356 TCTTTAGCAGCGCTTCTAGCAAAAACGCCGCTAAAGACCCTGA
1 TCTTTAGCGGCGCTTGTAGCAAAAATGCCGCTAAAGACCCTGA
41710399 TCTTTAGCGGCGCTT
1 TCTTTAGCGGCGCTT
41710414 CCACTAAAGC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTGTAGCAAAAATGCCGCTAAAGACCCTGA
Found at i:41710414 original size:43 final size:43
Alignment explanation
Indices: 41710296--41710432 Score: 186
Period size: 43 Copynumber: 3.2 Consensus size: 43
41710286 TAGGAAAAGT
* * * *
41710296 GCCGCTAAAGACCCTAATCTTTAGCGGCGCTTGTCGCAAAAAT
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTCTAGCAAAAAC
* *
41710339 GCCACTAAAGACCCTGATCTTTAGCAGCGCTTCTAGCAAAAAC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTCTAGCAAAAAC
* * *
41710382 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTCCA-CTAAAGC
1 GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTCTAGCAAAAAC
41710424 GCCGCTAAA
1 GCCGCTAAA
41710433 TGTCTTAGTC
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 14 0.17
43 69 0.83
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (43 bp):
GCCGCTAAAGACCCTGATCTTTAGCGGCGCTTCTAGCAAAAAC
Found at i:41712903 original size:22 final size:24
Alignment explanation
Indices: 41712865--41712909 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
41712855 AATGCAATAT
41712865 TGTTGAAAAATCAAATAA-AAAAG
1 TGTTGAAAAATCAAATAACAAAAG
41712888 TGTTG-AAAA-CACAATAACAAAA
1 TGTTGAAAAATCA-AATAACAAAA
41712910 AAACATAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.60, C:0.09, G:0.11, T:0.20
Consensus pattern (24 bp):
TGTTGAAAAATCAAATAACAAAAG
Found at i:41714502 original size:20 final size:21
Alignment explanation
Indices: 41714473--41714524 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
41714463 TAAATTTAAC
* *
41714473 TTTTTTAAAATTTTA-TAAAA
1 TTTTTAAAAATTATATTAAAA
*
41714493 TTTTTAAAAAATATATTAAAA
1 TTTTTAAAAATTATATTAAAA
*
41714514 TTTATAAAAAT
1 TTTTTAAAAAT
41714525 ATTAAATAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTTTTAAAAATTATATTAAAA
Found at i:41714503 original size:21 final size:21
Alignment explanation
Indices: 41714479--41714537 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
41714469 TAACTTTTTT
* *
41714479 AAAATTTTATAAAATTTTTAA
1 AAAATTATATAAAATTTATAA
41714500 AAAA-TATATTAAAATTTATAA
1 AAAATTATA-TAAAATTTATAA
*
41714521 AAATATTAAATAAAATT
1 AAA-ATTATATAAAATT
41714538 CAACAAAGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 8 0.25
23 3 0.09
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAAATTATATAAAATTTATAA
Found at i:41714526 original size:18 final size:19
Alignment explanation
Indices: 41714495--41714530 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
41714485 TTATAAAATT
41714495 TTTAAAAAATATATTAAAA
1 TTTAAAAAATATATTAAAA
*
41714514 TTTATAAAA-ATATTAAA
1 TTTAAAAAATATATTAAA
41714531 TAAAATTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TTTAAAAAATATATTAAAA
Found at i:41714852 original size:21 final size:21
Alignment explanation
Indices: 41714816--41714864 Score: 57
Period size: 23 Copynumber: 2.3 Consensus size: 21
41714806 TATTAATTGT
*
41714816 ATGTGT-AAAGTTTTT-TTAA
1 ATGTGTAAAATTTTTTATTAA
41714835 ATGTGTATAAATTATTTTATTAA
1 ATGTGTA-AAATT-TTTTATTAA
41714858 ATGTGTA
1 ATGTGTA
41714865 GCCTAAAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 6 0.24
21 4 0.16
22 4 0.16
23 11 0.44
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (21 bp):
ATGTGTAAAATTTTTTATTAA
Found at i:41715249 original size:21 final size:21
Alignment explanation
Indices: 41715204--41715254 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
41715194 GTTTTGAACT
* * *
41715204 TTTTGAATAATATTTTTATACA
1 TTTT-AATAATATTTCTACAAA
41715226 TTTTAATAATATTTCTACAAA
1 TTTTAATAATATTTCTACAAA
41715247 TTTATAAT
1 TTT-TAAT
41715255 TTTTTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTTAATAATATTTCTACAAA
Found at i:41720573 original size:21 final size:22
Alignment explanation
Indices: 41720537--41720578 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
41720527 AATTATGTCC
* *
41720537 CTATGAAAAGACATGAGACTTA
1 CTATAAAAAGACATGAAACTTA
41720559 CTATAAAAAGA-ATGAAACTT
1 CTATAAAAAGACATGAAACTT
41720579 TATTTGTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.50, C:0.12, G:0.14, T:0.24
Consensus pattern (22 bp):
CTATAAAAAGACATGAAACTTA
Found at i:41728394 original size:18 final size:18
Alignment explanation
Indices: 41728371--41728445 Score: 105
Period size: 18 Copynumber: 4.2 Consensus size: 18
41728361 CCCAACTACT
*
41728371 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
41728389 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
**
41728407 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
*
41728425 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
41728443 GTA
1 GTA
41728446 AACGGTCGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:41730455 original size:16 final size:16
Alignment explanation
Indices: 41730434--41730484 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
41730424 GACAACAAGG
41730434 ATATATGTAAATATAT
1 ATATATGTAAATATAT
* *
41730450 ATATATGTATATGTAT
1 ATATATGTAAATATAT
*
41730466 ATAAATTGTAAA-ATAT
1 ATATA-TGTAAATATAT
41730482 ATA
1 ATA
41730485 AATGATGTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 24 0.83
17 5 0.17
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (16 bp):
ATATATGTAAATATAT
Found at i:41730500 original size:35 final size:34
Alignment explanation
Indices: 41730442--41730524 Score: 112
Period size: 35 Copynumber: 2.4 Consensus size: 34
41730432 GGATATATGT
* *
41730442 AAATATATATATATGTATATGTATATAAATTGTA
1 AAATATATAAATATGTATATGTATATAAATTATA
*
41730476 AAATATATAAATGATGTATGTGTATATAAATTATA
1 AAATATATAAAT-ATGTATATGTATATAAATTATA
* *
41730511 AAATAAAAAAATAT
1 AAATATATAAATAT
41730525 ATAAAAAGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
34 13 0.30
35 30 0.70
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (34 bp):
AAATATATAAATATGTATATGTATATAAATTATA
Found at i:41735340 original size:3 final size:3
Alignment explanation
Indices: 41735334--41735359 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
41735324 CCTGACTGTC
41735334 CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CA
41735360 ACAAGCTCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:41737254 original size:2 final size:2
Alignment explanation
Indices: 41737247--41737275 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
41737237 CTCACCACTC
41737247 TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
41737276 GCCTACCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:41737265 original size:13 final size:13
Alignment explanation
Indices: 41737247--41737272 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41737237 CTCACCACTC
41737247 TATATATATATAT
1 TATATATATATAT
41737260 TATATATATATAT
1 TATATATATATAT
41737273 ATAGCCTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATATATATAT
Found at i:41738509 original size:43 final size:41
Alignment explanation
Indices: 41738440--41738526 Score: 120
Period size: 43 Copynumber: 2.1 Consensus size: 41
41738430 GAGAGAGTAC
*
41738440 AAATTAATTTATTAGGGAACAGTCAATGAGTATAGTTTTGATT
1 AAATTAATTTACTAGGGAACAGTCAATGAGTATA-TTTTG-TT
* * *
41738483 AAATTAATTTACTAGGTAACATTCAATGAGTGTATTTTGTT
1 AAATTAATTTACTAGGGAACAGTCAATGAGTATATTTTGTT
41738524 AAA
1 AAA
41738527 CCTTTTGAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 5 0.12
42 5 0.12
43 30 0.75
ACGTcount: A:0.38, C:0.06, G:0.16, T:0.40
Consensus pattern (41 bp):
AAATTAATTTACTAGGGAACAGTCAATGAGTATATTTTGTT
Found at i:41746697 original size:13 final size:13
Alignment explanation
Indices: 41746679--41746710 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
41746669 GCAGTCTATT
41746679 AATAAATGTAAAA
1 AATAAATGTAAAA
41746692 AATAAATGTAAAA
1 AATAAATGTAAAA
41746705 AATAAA
1 AATAAA
41746711 AAAGCTAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (13 bp):
AATAAATGTAAAA
Found at i:41746842 original size:16 final size:16
Alignment explanation
Indices: 41746823--41746856 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
41746813 TGAATATTTA
41746823 ATCATCTACATATTAT
1 ATCATCTACATATTAT
* *
41746839 ATCATTTACTTATTAT
1 ATCATCTACATATTAT
41746855 AT
1 AT
41746857 TTATATTCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (16 bp):
ATCATCTACATATTAT
Found at i:41749630 original size:2 final size:2
Alignment explanation
Indices: 41749623--41749649 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
41749613 AGATAAAAAT
41749623 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
41749650 ATAGAGTGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:41751581 original size:18 final size:20
Alignment explanation
Indices: 41751550--41751590 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
41751540 TAAATTAATT
*
41751550 AAAGTATAAGAAAATTCTAA
1 AAAGTATAAGAAAATTCCAA
41751570 AAAGT-TAA-AAAATTCCAA
1 AAAGTATAAGAAAATTCCAA
41751588 AAA
1 AAA
41751591 CTTTAAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 12 0.60
19 3 0.15
20 5 0.25
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (20 bp):
AAAGTATAAGAAAATTCCAA
Found at i:41751598 original size:18 final size:18
Alignment explanation
Indices: 41751560--41751598 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
41751550 AAAGTATAAG
* *
41751560 AAAATTCTAAAAAGTTAA
1 AAAATTCCAAAAACTTAA
41751578 AAAATTCCAAAAACTTTAA
1 AAAATTCCAAAAAC-TTAA
41751597 AA
1 AA
41751599 GATTATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAATTCCAAAAACTTAA
Found at i:41752446 original size:28 final size:28
Alignment explanation
Indices: 41752414--41752469 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
41752404 ATTGAGCATT
41752414 TACTTGATTGGTATGAGAATTGTTGCCA
1 TACTTGATTGGTATGAGAATTGTTGCCA
41752442 TACTTGATTGGTATGAGAATTGTTGCCA
1 TACTTGATTGGTATGAGAATTGTTGCCA
41752470 ACGTAGGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (28 bp):
TACTTGATTGGTATGAGAATTGTTGCCA
Found at i:41762180 original size:25 final size:25
Alignment explanation
Indices: 41762113--41762181 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
41762103 TATTTTTAAA
* *
41762113 AAAATATTCATTATATATATAATTTAC
1 AAAATATTCA-TAAAT-TAAAATTTAC
*
41762140 AAAA-ATTAAATAAATTAAAATTTAC
1 AAAATATT-CATAAATTAAAATTTAC
*
41762165 AAAATATTCATCAATTA
1 AAAATATTCATAAATTA
41762182 TATATTTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
25 20 0.57
26 10 0.29
27 5 0.14
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (25 bp):
AAAATATTCATAAATTAAAATTTAC
Found at i:41765856 original size:18 final size:20
Alignment explanation
Indices: 41765819--41765858 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
41765809 AGTAGTTAAC
*
41765819 ATAAATATATTTTTTATTTA
1 ATAAATATATTTTATATTTA
41765839 ATAAATAT-TTTTAT-TTTA
1 ATAAATATATTTTATATTTA
41765857 AT
1 AT
41765859 TATTATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 5 0.26
20 8 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATAAATATATTTTATATTTA
Found at i:41767381 original size:84 final size:84
Alignment explanation
Indices: 41767277--41767447 Score: 306
Period size: 84 Copynumber: 2.0 Consensus size: 84
41767267 AATAAGAAAT
* *
41767277 TTTGATTATATAGAAAGTCTTAAAAGGATCATTACTTGACTTGATTTTATTTACGTTTTGACTTT
1 TTTGACTACATAGAAAGTCTTAAAAGGATCATTACTTGACTTGATTTTATTTACGTTTTGACTTT
41767342 AATAAAGTGTTTCAAGATA
66 AATAAAGTGTTTCAAGATA
*
41767361 TTTGACTACATAGAAAGTCTTAAAAGGATCATTACTTGACTTGATTTTCTTTACGTTTTGACTTT
1 TTTGACTACATAGAAAGTCTTAAAAGGATCATTACTTGACTTGATTTTATTTACGTTTTGACTTT
*
41767426 AATAAAGTGTTTCAAGGTA
66 AATAAAGTGTTTCAAGATA
41767445 TTT
1 TTT
41767448 AATCAAAAGA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.44
Consensus pattern (84 bp):
TTTGACTACATAGAAAGTCTTAAAAGGATCATTACTTGACTTGATTTTATTTACGTTTTGACTTT
AATAAAGTGTTTCAAGATA
Found at i:41771945 original size:20 final size:21
Alignment explanation
Indices: 41771896--41771959 Score: 71
Period size: 21 Copynumber: 3.1 Consensus size: 21
41771886 AATAGAAAAA
*
41771896 AATAAAAATCATAAAAATTAT
1 AATAAAAATCGTAAAAATTAT
*
41771917 AAAAAAAATCGTAAAGAATT-T
1 AATAAAAATCGTAAA-AATTAT
*
41771938 -ATAAAAATTGT-AAAATTAT
1 AATAAAAATCGTAAAAATTAT
41771957 AAT
1 AAT
41771960 TATAAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
18 4 0.11
19 3 0.08
20 11 0.31
21 14 0.39
22 4 0.11
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (21 bp):
AATAAAAATCGTAAAAATTAT
Found at i:41776129 original size:15 final size:15
Alignment explanation
Indices: 41776106--41776145 Score: 57
Period size: 13 Copynumber: 2.8 Consensus size: 15
41776096 AAGATTTAAT
41776106 TAAAATTAAAAAATA
1 TAAAATTAAAAAATA
*
41776121 TATAATT--AAAATA
1 TAAAATTAAAAAATA
41776134 TAAAATTAAAAA
1 TAAAATTAAAAA
41776146 GAATGGCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
13 12 0.57
15 9 0.43
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAAATTAAAAAATA
Found at i:41780744 original size:13 final size:13
Alignment explanation
Indices: 41780726--41780757 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
41780716 TTTCCAGCAA
41780726 TTATGAATTTATT
1 TTATGAATTTATT
41780739 TTATGAATTTATT
1 TTATGAATTTATT
*
41780752 TGATGA
1 TTATGA
41780758 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:41780965 original size:50 final size:50
Alignment explanation
Indices: 41780852--41781093 Score: 272
Period size: 50 Copynumber: 4.7 Consensus size: 50
41780842 ATTTGGGTAA
* * *
41780852 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
41780908 AGAGGTCCTC-TGTAAGACCATGTCTAGGACATGGCATGGGCACCGAGACG
1 AGAGGTCC-CATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
41780958 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * * *
41781008 AGAGGTCCCCTATAAGACCATGTTTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
41781058 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
41781094 TTTGGCATGT
Statistics
Matches: 162, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
49 2 0.01
50 88 0.54
51 28 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 37 0.23
57 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:41781047 original size:100 final size:103
Alignment explanation
Indices: 41780852--41781101 Score: 337
Period size: 100 Copynumber: 2.4 Consensus size: 103
41780842 ATTTGGGTAA
*
41780852 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCT
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
41780917 CTGTAAGACCATGTCTAGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTAGGACATGGCATGGGCACC-ATCACG
* * *
41780958 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
* *
41781020 TAAGACCATGTTTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTAGGACATGGCATGGGCACCATCACG
* *
41781058 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
41781102 GTTATTATCA
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
99 1 0.01
100 48 0.37
101 39 0.30
105 2 0.02
106 40 0.31
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.22
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTAGGACATGGCATGGGCACCATCACG
Found at i:41783263 original size:23 final size:22
Alignment explanation
Indices: 41783211--41783263 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
41783201 TCCACGTCTT
*
41783211 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
41783233 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
41783256 TTTCTTTT
1 TTTCTTTT
41783264 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:41788564 original size:419 final size:419
Alignment explanation
Indices: 41787786--41788628 Score: 1686
Period size: 419 Copynumber: 2.0 Consensus size: 419
41787776 AAGTATAGAT
41787786 ATATTCATACGAGCATAACACAAATATTGTAAATTATTCAAGCTTGAATGGTTTTAAAACCAACC
1 ATATTCATACGAGCATAACACAAATATTGTAAATTATTCAAGCTTGAATGGTTTTAAAACCAACC
41787851 CTTGCAGACATAAAAGATCAGACAACTGTCCATGATCATTGGCAGCCTATAACTTAAAAGTTCAG
66 CTTGCAGACATAAAAGATCAGACAACTGTCCATGATCATTGGCAGCCTATAACTTAAAAGTTCAG
41787916 TAGAACATCAATTTATTATATAGTAATTATTTTACATAGCTGAATGCTGTAATCCTTAAGAGTTC
131 TAGAACATCAATTTATTATATAGTAATTATTTTACATAGCTGAATGCTGTAATCCTTAAGAGTTC
41787981 TCATGATGTCGTATAGAAGACCTTTATGGTCTTGGCAAACAATCTGAACAAGCGTGTGAGCAGGA
196 TCATGATGTCGTATAGAAGACCTTTATGGTCTTGGCAAACAATCTGAACAAGCGTGTGAGCAGGA
41788046 CTGAGCGAGTTGTCCATCACGACAGAAACATTGTTGGAAGTAAGTGATATACTTGGGAGTTCATT
261 CTGAGCGAGTTGTCCATCACGACAGAAACATTGTTGGAAGTAAGTGATATACTTGGGAGTTCATT
41788111 GGAGACCTCTAAGTGGAAAATATCTTCTGTTATTCCAGATGGGAGAAACGGCGATGCCTGAGAAC
326 GGAGACCTCTAAGTGGAAAATATCTTCTGTTATTCCAGATGGGAGAAACGGCGATGCCTGAGAAC
41788176 ATGCAGCAATTTCAGGTCCAACCTTTTCA
391 ATGCAGCAATTTCAGGTCCAACCTTTTCA
41788205 ATATTCATACGAGCATAACACAAATATTGTAAATTATTCAAGCTTGAATGGTTTTAAAACCAACC
1 ATATTCATACGAGCATAACACAAATATTGTAAATTATTCAAGCTTGAATGGTTTTAAAACCAACC
41788270 CTTGCAGACATAAAAGATCAGACAACTGTCCATGATCATTGGCAGCCTATAACTTAAAAGTTCAG
66 CTTGCAGACATAAAAGATCAGACAACTGTCCATGATCATTGGCAGCCTATAACTTAAAAGTTCAG
41788335 TAGAACATCAATTTATTATATAGTAATTATTTTACATAGCTGAATGCTGTAATCCTTAAGAGTTC
131 TAGAACATCAATTTATTATATAGTAATTATTTTACATAGCTGAATGCTGTAATCCTTAAGAGTTC
41788400 TCATGATGTCGTATAGAAGACCTTTATGGTCTTGGCAAACAATCTGAACAAGCGTGTGAGCAGGA
196 TCATGATGTCGTATAGAAGACCTTTATGGTCTTGGCAAACAATCTGAACAAGCGTGTGAGCAGGA
41788465 CTGAGCGAGTTGTCCATCACGACAGAAACATTGTTGGAAGTAAGTGATATACTTGGGAGTTCATT
261 CTGAGCGAGTTGTCCATCACGACAGAAACATTGTTGGAAGTAAGTGATATACTTGGGAGTTCATT
41788530 GGAGACCTCTAAGTGGAAAATATCTTCTGTTATTCCAGATGGGAGAAACGGCGATGCCTGAGAAC
326 GGAGACCTCTAAGTGGAAAATATCTTCTGTTATTCCAGATGGGAGAAACGGCGATGCCTGAGAAC
41788595 ATGCAGCAATTTCAGGTCCAACCTTTTCA
391 ATGCAGCAATTTCAGGTCCAACCTTTTCA
41788624 ATATT
1 ATATT
41788629 AAAGTTAATC
Statistics
Matches: 424, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
419 424 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (419 bp):
ATATTCATACGAGCATAACACAAATATTGTAAATTATTCAAGCTTGAATGGTTTTAAAACCAACC
CTTGCAGACATAAAAGATCAGACAACTGTCCATGATCATTGGCAGCCTATAACTTAAAAGTTCAG
TAGAACATCAATTTATTATATAGTAATTATTTTACATAGCTGAATGCTGTAATCCTTAAGAGTTC
TCATGATGTCGTATAGAAGACCTTTATGGTCTTGGCAAACAATCTGAACAAGCGTGTGAGCAGGA
CTGAGCGAGTTGTCCATCACGACAGAAACATTGTTGGAAGTAAGTGATATACTTGGGAGTTCATT
GGAGACCTCTAAGTGGAAAATATCTTCTGTTATTCCAGATGGGAGAAACGGCGATGCCTGAGAAC
ATGCAGCAATTTCAGGTCCAACCTTTTCA
Found at i:41792194 original size:32 final size:32
Alignment explanation
Indices: 41792153--41792219 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
41792143 GTCGGTACCT
41792153 AAAGCACTCAAGCAAATGCTTCACCTGAACGG
1 AAAGCACTCAAGCAAATGCTTCACCTGAACGG
41792185 AAAGCACTCAAGCAAATGCTTCACCTGAACGG
1 AAAGCACTCAAGCAAATGCTTCACCTGAACGG
41792217 AAA
1 AAA
41792220 AAGGTTGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.40, C:0.27, G:0.18, T:0.15
Consensus pattern (32 bp):
AAAGCACTCAAGCAAATGCTTCACCTGAACGG
Found at i:41803375 original size:17 final size:17
Alignment explanation
Indices: 41803353--41803389 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
41803343 AAAGATTTGA
41803353 TTTTTCTTTTCT-TTTCC
1 TTTTTCTTTT-TATTTCC
41803370 TTTTTCTTTTTATTTCC
1 TTTTTCTTTTTATTTCC
41803387 TTT
1 TTT
41803390 GAAGTGAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTCTTTTTATTTCC
Found at i:41807204 original size:6 final size:6
Alignment explanation
Indices: 41807195--41807271 Score: 50
Period size: 6 Copynumber: 12.5 Consensus size: 6
41807185 CTTTCTTTCC
* * *
41807195 CTTTTT CTTTTT C-TTTC CTCTTT C-TTTT CTGTTT CGTTTTT GCTTTGTCT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C-TTTTT -CTTT-T-T
* * *
41807245 CTTTTT CTATTT CTTTAT CTTTAT CTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTT
41807272 ATTTATTCAT
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
5 8 0.14
6 33 0.59
7 8 0.14
8 6 0.11
9 1 0.02
ACGTcount: A:0.04, C:0.21, G:0.05, T:0.70
Consensus pattern (6 bp):
CTTTTT
Found at i:41807210 original size:12 final size:12
Alignment explanation
Indices: 41807195--41807271 Score: 50
Period size: 11 Copynumber: 6.2 Consensus size: 12
41807185 CTTTCTTTCC
41807195 CTTTTTCTTTTT
1 CTTTTTCTTTTT
* *
41807207 C-TTTCCTCTTT
1 CTTTTTCTTTTT
*
41807218 C-TTTTCTGTTT
1 CTTTTTCTTTTT
41807229 CGTTTTTGCTTTGTCT
1 C-TTTTT-CTTT-T-T
*
41807245 CTTTTTCTATTT
1 CTTTTTCTTTTT
* *
41807257 CTTTATCTTTAT
1 CTTTTTCTTTTT
41807269 CTT
1 CTT
41807272 ATTTATTCAT
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
11 18 0.35
12 14 0.27
13 5 0.10
14 6 0.12
15 6 0.12
16 2 0.04
ACGTcount: A:0.04, C:0.21, G:0.05, T:0.70
Consensus pattern (12 bp):
CTTTTTCTTTTT
Found at i:41807220 original size:17 final size:18
Alignment explanation
Indices: 41807186--41807222 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
41807176 TTCTCCTTTC
*
41807186 TTTCTTTCCCTTTTTCTT
1 TTTCTTTCCCTCTTTCTT
41807204 TTTCTTT-CCTCTTTCTT
1 TTTCTTTCCCTCTTTCTT
41807221 TT
1 TT
41807223 CTGTTTCGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTCTTTCCCTCTTTCTT
Found at i:41807301 original size:5 final size:5
Alignment explanation
Indices: 41807291--41807323 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
41807281 TTTGTTTTAT
41807291 TATAA TATAA TATAA TATAA TATAA TAT-A TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATA
41807324 CTTAATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:41807311 original size:15 final size:14
Alignment explanation
Indices: 41807291--41807358 Score: 60
Period size: 12 Copynumber: 5.2 Consensus size: 14
41807281 TTTGTTTTAT
41807291 TATAATATAATATAA
1 TATAATATAATAT-A
41807306 TATAATATAATATA
1 TATAATATAATATA
*
41807320 TATACT-TAAT-TA
1 TATAATATAATATA
41807332 T-TAA-AGTAA-ATA
1 TATAATA-TAATATA
41807344 TAT--TATAATATA
1 TATAATATAATATA
41807356 TAT
1 TAT
41807359 TTTTCTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
11 5 0.11
12 16 0.36
13 5 0.11
14 6 0.13
15 13 0.29
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (14 bp):
TATAATATAATATA
Found at i:41807355 original size:10 final size:10
Alignment explanation
Indices: 41807288--41807356 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 10
41807278 TCATTTGTTT
41807288 TATTATAATA
1 TATTATAATA
*
41807298 TAATATAATA
1 TATTATAATA
*
41807308 TAATATAATA
1 TATTATAATA
41807318 TATATACTTAAT-
1 TAT-TA--TAATA
41807330 TATTAAAGTAAATA
1 TATT--A-T-AATA
41807344 TATTATAATA
1 TATTATAATA
41807354 TAT
1 TAT
41807357 ATTTTTCTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
10 28 0.57
11 4 0.08
12 5 0.10
13 8 0.16
14 4 0.08
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (10 bp):
TATTATAATA
Found at i:41807919 original size:12 final size:12
Alignment explanation
Indices: 41807904--41807986 Score: 71
Period size: 11 Copynumber: 6.8 Consensus size: 12
41807894 CTTTCTTTCC
41807904 CTTTTTCTTTTT
1 CTTTTTCTTTTT
*
41807916 C-TTTCCTTTTT
1 CTTTTTCTTTTT
*
41807927 C-TTTTCTGTTT
1 CTTTTTCTTTTT
41807938 CGTTTTTGCTTTGTCT
1 C-TTTTT-CTTT-T-T
*
41807954 CTTTTTCTATTT
1 CTTTTTCTTTTT
* *
41807966 ATTTTTCTTTAT
1 CTTTTTCTTTTT
41807978 CTTTTTCTT
1 CTTTTTCTT
41807987 ATTTATTCAT
Statistics
Matches: 57, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
11 19 0.33
12 19 0.33
13 5 0.09
14 6 0.11
15 6 0.11
16 2 0.04
ACGTcount: A:0.04, C:0.18, G:0.05, T:0.73
Consensus pattern (12 bp):
CTTTTTCTTTTT
Found at i:41807931 original size:5 final size:6
Alignment explanation
Indices: 41807904--41807986 Score: 71
Period size: 6 Copynumber: 13.5 Consensus size: 6
41807894 CTTTCTTTCC
* *
41807904 CTTTTT CTTTTT C-TTTC CTTTTT C-TTTT CTGTTT CGTTTTT GCTTTGTCT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C-TTTTT -CTTT-T-T
* * *
41807954 CTTTTT CTATTT ATTTTT CTTTAT CTTTTT CTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTT
41807987 ATTTATTCAT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
5 9 0.15
6 37 0.61
7 8 0.13
8 6 0.10
9 1 0.02
ACGTcount: A:0.04, C:0.18, G:0.05, T:0.73
Consensus pattern (6 bp):
CTTTTT
Found at i:41808066 original size:716 final size:711
Alignment explanation
Indices: 41806636--41808077 Score: 2433
Period size: 716 Copynumber: 2.0 Consensus size: 711
41806626 TCGTCGACTT
* *
41806636 TATATTTCCCTTTTTAGTTGAGGATTCTGGTACGACGTAGCTACGAAATTAAAATAATTAAAATT
1 TATATTTTCCTTTTTAGTTGAGGATTCTGATACGACGTAGCTACGAAATTAAAATAATTAAAATT
*
41806701 CATCAATACAACGTAATTCAATTCATATTGAATATTTTAATTTTTACTCAATATTTGCCTAAATT
66 CATCAATACAACATAATTCAATTCATATTGAATATTTTAATTTTTACTCAATATTTGCCTAAATT
*
41806766 TCAATTTAGTCCCTAAACCAAGGCTAACTTTATTTTTTCTTCACAATTAATCTTATATTTTCATA
131 TCAATTTAGTCCCTAAACCAAGACTAACTTTA--TTTTCTTCACAATTAATCTTATATTTTCATA
41806831 CAAATTCTACTTTAAACTAAATTTAACTCCCTATTTTCACATAAATTCCTAAATTTTTTATTTTT
194 CAAATTCTACTTTAAACTAAATTTAACTCCCTATTTTCACATAAATTCCTAAATTTTTTATTTTT
* *
41806896 TCATAATTTAGTCCCTATTACACAAAATTTACTATCTGTTCTACAATTTAATCCTTTTTCATTTT
259 TCATAATTTAGTCCCTATCACACAAAATTTACTATCTGTTCTACAATTTAATCCTTTTTCATTTC
41806961 TAGCTTAAAAATCTATCAATTTAATCCCTAATACTAAAATTATTCAATATAGACAACACTTAAAA
324 TAGCTTAAAAATCTATCAATTTAATCCCTAATACTAAAATTATTCAATATAGACAACACTTAAAA
* * * *
41807026 ACTCAATAATTTCTAAAATTTTGACTTGGGTCAGGTAATATTTAACACCGAGATTCCAAAAATAT
389 ACTCAATAATTTCTAAAATTTTGACTTGGATCAAGTAATATTTAACACCGAAATTCCAAAAACAT
* *
41807091 AAGAATTACAAGAAAAATAAACTAAATTGACTAATTAATTGAACTTGAAACTTTGAAACCCTTAA
454 AAGAATTACAAGAAAAATAAACTAAATTGACTAACTAATTGAACTTGAAACTTTGAAACCCCTAA
*
41807156 CTTAGCCTTGTCTTTCTCCTTTCTCCTTTCTTTCTTTCCCTTTTTCTTTTTCTTTCCTCTTTCTT
519 CCTAGCCTTG----T-TCCTTTCTCCTTTCTTTCTTTCCCTTTTTCTTTTTCTTTCCTCTTTCTT
41807221 TTCTGTTTCGTTTTTGCTTTGTCTCTTTTTCTATTTCTTTATCTTTATCTTATTTATTCATTTGT
579 TTCTGTTTCGTTTTTGCTTTGTCTCTTTTTCTATTTCTTTATCTTTATCTTATTTATTCATTTGT
*
41807286 TTTATTATAATATAATATAATATAATATAATATATATACTTAATTATTAAAGTAAATATATTATA
644 TTTATTATAATATAATATAATATAATATAATATATATACTTAATTATCAAAGTAAATATATTATA
41807351 ATA
709 ATA
* *
41807354 TATATTTTTCTTTTTAGTTGAGGATTCTGATACGACGTAGCTACGGAATTAAAATAATTAAAATT
1 TATATTTTCCTTTTTAGTTGAGGATTCTGATACGACGTAGCTACGAAATTAAAATAATTAAAATT
* *
41807419 CATCAATACAACATAATTCAATTTCATATTGAATATTTTAATTTTTACTCAATATTTTCTTAAAT
66 CATCAATACAACATAATTCAA-TTCATATTGAATATTTTAATTTTTACTCAATATTTGCCTAAAT
*
41807484 TTCAATTTAGTCCCTAAACCGAGACTAACTTTA-TTTCTTCACAATTAATCTTATATTTTCATAC
130 TTCAATTTAGTCCCTAAACCAAGACTAACTTTATTTTCTTCACAATTAATCTTATATTTTCATAC
*
41807548 AAATTCTACTTTAAACTAAATTTAACTTCCTATTTTCACATAAATTCCTAAATTTTTTATTTTTT
195 AAATTCTACTTTAAACTAAATTTAACTCCCTATTTTCACATAAATTCCTAAATTTTTTATTTTTT
*
41807613 CATAATTTAGTCCCTATCACACAAAATTTATTATCTGTTCTACAATTTAATCCTTTTTCATTTCT
260 CATAATTTAGTCCCTATCACACAAAATTTACTATCTGTTCTACAATTTAATCCTTTTTCATTTCT
41807678 AGCTTAAAAATCTATCAATTTAATCCCTAATACTAAAATTATTCAATATAGACAACACTTAAAAA
325 AGCTTAAAAATCTATCAATTTAATCCCTAATACTAAAATTATTCAATATAGACAACACTTAAAAA
41807743 CTCAATAATTTCTAAAATTTTGACTTGGATCAAGTAATATTTAACACCGAAATTCCAAAAACATA
390 CTCAATAATTTCTAAAATTTTGACTTGGATCAAGTAATATTTAACACCGAAATTCCAAAAACATA
*
41807808 AGAATTACAAGAAAAATAAACTAAATTGACTAACTAATTGAATTTGAAACTTTGAAACCCCTAAC
455 AGAATTACAAGAAAAATAAACTAAATTGACTAACTAATTGAACTTGAAACTTTGAAACCCCTAAC
*
41807873 CTAGCCTTG-T-CTTTCTCCTTTCTTTCTTTCCCTTTTTCTTTTTCTTTCCTTTTTCTTTTCTGT
520 CTAGCCTTGTTCCTTTCTCCTTTCTTTCTTTCCCTTTTTCTTTTTCTTTCCTCTTTCTTTTCTGT
* *
41807936 TTCGTTTTTGCTTTGTCTCTTTTTCTATTTATTTTTCTTTATCTTTTTCTTATTTATTCATTCTT
585 TTCGTTTTTGCTTTGTCTCTTTTTC----TA--TTTCTTTATCTTTATCTTATTTATTCATT-TG
** * * * *
41808001 TATTTATT-TGTTTTATTATAATATAATATAATATATATACTTAATTATCAAGGTAAATGTATTA
643 T-TTTATTATAATATAATATAATATAATATAATATATATACTTAATTATCAAAGTAAATATATTA
41808065 TAATA
707 TAATA
41808070 TATATTTT
1 TATATTTT
41808078 AACTTAAAAT
Statistics
Matches: 684, Mismatches: 31, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
709 77 0.11
710 1 0.00
713 2 0.00
715 28 0.04
716 417 0.61
717 6 0.01
718 81 0.12
719 72 0.11
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (711 bp):
TATATTTTCCTTTTTAGTTGAGGATTCTGATACGACGTAGCTACGAAATTAAAATAATTAAAATT
CATCAATACAACATAATTCAATTCATATTGAATATTTTAATTTTTACTCAATATTTGCCTAAATT
TCAATTTAGTCCCTAAACCAAGACTAACTTTATTTTCTTCACAATTAATCTTATATTTTCATACA
AATTCTACTTTAAACTAAATTTAACTCCCTATTTTCACATAAATTCCTAAATTTTTTATTTTTTC
ATAATTTAGTCCCTATCACACAAAATTTACTATCTGTTCTACAATTTAATCCTTTTTCATTTCTA
GCTTAAAAATCTATCAATTTAATCCCTAATACTAAAATTATTCAATATAGACAACACTTAAAAAC
TCAATAATTTCTAAAATTTTGACTTGGATCAAGTAATATTTAACACCGAAATTCCAAAAACATAA
GAATTACAAGAAAAATAAACTAAATTGACTAACTAATTGAACTTGAAACTTTGAAACCCCTAACC
TAGCCTTGTTCCTTTCTCCTTTCTTTCTTTCCCTTTTTCTTTTTCTTTCCTCTTTCTTTTCTGTT
TCGTTTTTGCTTTGTCTCTTTTTCTATTTCTTTATCTTTATCTTATTTATTCATTTGTTTTATTA
TAATATAATATAATATAATATAATATATATACTTAATTATCAAAGTAAATATATTATAATA
Found at i:41810332 original size:21 final size:21
Alignment explanation
Indices: 41810308--41810358 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
41810298 TCTAATTAAA
41810308 AAAGAAGCTGAATGGAAAAAG
1 AAAGAAGCTGAATGGAAAAAG
41810329 AAAGAAGCTGAATGGAAAAAG
1 AAAGAAGCTGAATGGAAAAAG
*
41810350 AGAGAAGCT
1 AAAGAAGCT
41810359 TTGTTGCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.55, C:0.06, G:0.29, T:0.10
Consensus pattern (21 bp):
AAAGAAGCTGAATGGAAAAAG
Found at i:41828095 original size:11 final size:12
Alignment explanation
Indices: 41828071--41828096 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
41828061 TGCTCTTATT
41828071 AAAAATTAGAAA
1 AAAAATTAGAAA
41828083 AAAAATTAGAAA
1 AAAAATTAGAAA
41828095 AA
1 AA
41828097 TAATAAATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (12 bp):
AAAAATTAGAAA
Found at i:41828142 original size:8 final size:8
Alignment explanation
Indices: 41828131--41828186 Score: 51
Period size: 8 Copynumber: 6.5 Consensus size: 8
41828121 AATTTTAATG
41828131 AAAATATA
1 AAAATATA
41828139 AAAA-ATTA
1 AAAATA-TA
41828147 AAAATTTATA
1 AAAA--TATA
*
41828157 AAAATCGTA
1 AAAAT-ATA
41828166 AAAATATAA
1 AAAATAT-A
41828175 AAAATATA
1 AAAATATA
41828183 AAAA
1 AAAA
41828187 ATTGTAAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 1 0.03
8 17 0.43
9 15 0.38
10 6 0.15
11 1 0.03
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (8 bp):
AAAATATA
Found at i:41828161 original size:17 final size:17
Alignment explanation
Indices: 41828131--41828186 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
41828121 AATTTTAATG
41828131 AAAATATAAAAAAT-TA
1 AAAATATAAAAAATATA
* *
41828147 AAAATTTATAAAAATCGTA
1 AAAATATA-AAAAAT-ATA
41828166 AAAATATAAAAAATATA
1 AAAATATAAAAAATATA
41828183 AAAA
1 AAAA
41828187 ATTGTAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
16 7 0.21
17 12 0.35
18 6 0.18
19 9 0.26
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAATATAAAAAATATA
Found at i:41828217 original size:10 final size:9
Alignment explanation
Indices: 41828131--41828217 Score: 63
Period size: 9 Copynumber: 9.4 Consensus size: 9
41828121 AATTTTAATG
41828131 AAAATATAA
1 AAAATATAA
41828140 AAAAT-T-A
1 AAAATATAA
*
41828147 AAAATTTATA
1 AAAATATA-A
*
41828157 AAAATCGT-A
1 AAAAT-ATAA
41828166 AAAATATAA
1 AAAATATAA
41828175 AAAATATAA
1 AAAATATAA
*
41828184 AAAATTGTAA
1 AAAA-TATAA
**
41828194 AATTTTATAA
1 AA-AATATAA
41828204 AAAATCATAA
1 AAAAT-ATAA
41828214 AAAA
1 AAAA
41828218 ATTAACGAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
7 6 0.10
8 3 0.05
9 26 0.42
10 26 0.42
11 1 0.02
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (9 bp):
AAAATATAA
Found at i:41828383 original size:10 final size:10
Alignment explanation
Indices: 41828370--41828478 Score: 54
Period size: 9 Copynumber: 11.5 Consensus size: 10
41828360 ACTTATAAAA
41828370 TTTTATATA-
1 TTTTATATAT
41828379 TTTT-TATA-
1 TTTTATATAT
41828387 TTTTATA-AT
1 TTTTATATAT
41828396 TTTT-T-TGAT
1 TTTTATAT-AT
* *
41828405 TTTTATAAAA
1 TTTTATATAT
*
41828415 TTTTACATAT
1 TTTTATATAT
41828425 TTTT-TATAT
1 TTTTATATAT
* *
41828434 TTTTTTACGAT
1 TTTTATA-TAT
* *
41828445 TTTTGTATTT
1 TTTTATATAT
*
41828455 TTTTCTA-AT
1 TTTTATATAT
* *
41828464 TTTAATAAAT
1 TTTTATATAT
41828474 TTTTA
1 TTTTA
41828479 ACATTTGAAA
Statistics
Matches: 76, Mismatches: 15, Indels: 17
0.70 0.14 0.16
Matches are distributed among these distances:
8 10 0.13
9 30 0.39
10 28 0.37
11 8 0.11
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (10 bp):
TTTTATATAT
Found at i:41828408 original size:18 final size:18
Alignment explanation
Indices: 41828369--41828437 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
41828359 AACTTATAAA
41828369 ATTTTAT-ATATTTTTAT
1 ATTTTATAATATTTTTAT
*
41828386 ATTTTATAATTTTTTTGAT
1 ATTTTATAATATTTTT-AT
* *
41828405 -TTTTATAAAATTTTACAT
1 ATTTTATAATATTTT-TAT
*
41828423 ATTTT-TTATATTTTT
1 ATTTTATAATATTTTT
41828438 TTACGATTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
17 7 0.17
18 28 0.68
19 6 0.15
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (18 bp):
ATTTTATAATATTTTTAT
Found at i:41828466 original size:19 final size:19
Alignment explanation
Indices: 41828415--41828458 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
41828405 TTTTATAAAA
41828415 TTTTACATATTTTTTATATTT
1 TTTTACA-A-TTTTTATATTT
* *
41828436 TTTTACGATTTTTGTATTT
1 TTTTACAATTTTTATATTT
41828455 TTTT
1 TTTT
41828459 CTAATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 1 0.05
21 6 0.29
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTTACAATTTTTATATTT
Found at i:41836588 original size:11 final size:11
Alignment explanation
Indices: 41836572--41836616 Score: 72
Period size: 11 Copynumber: 4.1 Consensus size: 11
41836562 ATTAATCCTT
41836572 TCTCAATTTCC
1 TCTCAATTTCC
41836583 TCTCAATTTCC
1 TCTCAATTTCC
* *
41836594 TCTCAAATTGC
1 TCTCAATTTCC
41836605 TCTCAATTTCC
1 TCTCAATTTCC
41836616 T
1 T
41836617 TCCAAATTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.20, C:0.33, G:0.02, T:0.44
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:41836607 original size:22 final size:22
Alignment explanation
Indices: 41836572--41836632 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
41836562 ATTAATCCTT
*
41836572 TCTCAATTTCCTCTCAATTTCC
1 TCTCAAATTCCTCTCAATTTCC
*
41836594 TCTCAAATTGCTCTCAATTTCC
1 TCTCAAATTCCTCTCAATTTCC
*
41836616 T-TCCAAATTTCTCTCAA
1 TCT-CAAATTCCTCTCAA
41836633 ATCCATATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
21 1 0.03
22 34 0.97
ACGTcount: A:0.23, C:0.33, G:0.02, T:0.43
Consensus pattern (22 bp):
TCTCAAATTCCTCTCAATTTCC
Found at i:41836614 original size:33 final size:33
Alignment explanation
Indices: 41836572--41836634 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
41836562 ATTAATCCTT
41836572 TCTCAATTTCC-TCTC-AATTTCCTCTCAAATTGC
1 TCTCAATTTCCTTC-CAAATTT-CTCTCAAATTGC
41836605 TCTCAATTTCCTTCCAAATTTCTCTCAAAT
1 TCTCAATTTCCTTCCAAATTTCTCTCAAAT
41836635 CCATATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 21 0.75
34 7 0.25
ACGTcount: A:0.24, C:0.32, G:0.02, T:0.43
Consensus pattern (33 bp):
TCTCAATTTCCTTCCAAATTTCTCTCAAATTGC
Found at i:41836657 original size:51 final size:51
Alignment explanation
Indices: 41836596--41836693 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
41836586 CAATTTCCTC
41836596 TCAAATTGCTCTCAATTTCCT-TCCAAATTTCTCTCAAATCCATATTTAATA
1 TCAAATTGCTCTCAATTTCCTCT-CAAATTTCTCTCAAATCCATATTTAATA
* * * *
41836647 TCAATTTGCTCTCAATTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCAAATTGCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTT
41836694 TTAATTATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.02, T:0.45
Consensus pattern (51 bp):
TCAAATTGCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTTAATA
Found at i:41838735 original size:125 final size:125
Alignment explanation
Indices: 41838513--41838925 Score: 630
Period size: 125 Copynumber: 3.3 Consensus size: 125
41838503 CCCAAACATG
* *
41838513 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTATTTCAAAAATTCTTTTGATAAAGCAT-TCTG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCT-TG
*
41838577 CTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTTAACTCGAAATTATTTTTTCAGGAC
65 CTTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTTCAGGAC
*
41838638 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCTTGG
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCTTGC
*
41838703 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTTCAGGAC
* * * * * * * *
41838763 CTACAGTAGTAAAAGCACGTCCACGTGGGAGTGATTTCAGAAATTCTTCTTATAAAACATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCTTGC
* * *
41838828 TTGAAGTGTTTTTTATACTATTTGCTCAAAAACGTAAACTCAAAATTATTTTTTCAGGAC
66 TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTTCAGGAC
* ** *
41838888 CTACTGTATCAAAAATGGGTCCACGTGGGAGCGATTTC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTC
41838926 CTTAATAAAT
Statistics
Matches: 262, Mismatches: 25, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
125 261 1.00
126 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTCTGATAAAGCATCTTGC
TTGAAGCGTTTTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTTTTCAGGAC
Found at i:41842032 original size:17 final size:17
Alignment explanation
Indices: 41842010--41842045 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
41842000 TAAAGTGTTC
41842010 TAATTACATCTTTAAAT
1 TAATTACATCTTTAAAT
*
41842027 TAATTACATTTTTAAAT
1 TAATTACATCTTTAAAT
41842044 TA
1 TA
41842046 TCGATGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (17 bp):
TAATTACATCTTTAAAT
Found at i:41842180 original size:18 final size:19
Alignment explanation
Indices: 41842144--41842179 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
41842134 GCATAATTTT
41842144 TAAAAGTAAAAGCTAAAAA
1 TAAAAGTAAAAGCTAAAAA
41842163 TAAAA-TAAAA-CTAAAAA
1 TAAAAGTAAAAGCTAAAAA
41842180 AAGGACTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 5 0.29
19 5 0.29
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.17
Consensus pattern (19 bp):
TAAAAGTAAAAGCTAAAAA
Found at i:41842951 original size:16 final size:16
Alignment explanation
Indices: 41842930--41842965 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
41842920 TTTGGTTCGC
41842930 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
41842946 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
41842962 TGTA
1 TGTA
41842966 ATAGCTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:41843030 original size:44 final size:45
Alignment explanation
Indices: 41842946--41843036 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
41842936 GGATTAGAGG
* * *
41842946 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
41842991 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
41843035 TG
1 TG
41843037 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:41843219 original size:16 final size:16
Alignment explanation
Indices: 41843182--41843236 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
41843172 TTAATCATAT
*
41843182 TTAAACATA-ATTATAA
1 TTAAA-ATATATTTTAA
41843198 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
41843213 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
41843231 -TAAAAT
1 TTAAAAT
41843237 TCTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:41843229 original size:18 final size:18
Alignment explanation
Indices: 41843188--41843236 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
41843178 ATATTTAAAC
41843188 ATAATTATAATT-AAATAT
1 ATAATT-TAATTAAAATAT
41843206 AT--TTTAATTAAAATAT
1 ATAATTTAATTAAAATAT
41843222 ATAATTTAA-TAAAAT
1 ATAATTTAATTAAAAT
41843237 TCTTATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 5 0.18
16 10 0.36
17 6 0.21
18 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATAATTTAATTAAAATAT
Found at i:41843355 original size:67 final size:67
Alignment explanation
Indices: 41843284--41843496 Score: 163
Period size: 67 Copynumber: 3.1 Consensus size: 67
41843274 ATTGTTAATG
*
41843284 TTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAATATCTTAATCATATTTAAACATAAT
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATCTTAATCATATTTAAACATAAT
41843349 TA
66 TA
* * * * ***
41843351 TTATTAAATATATTTTAATTAAAATATATAATT-T-AAT-A-AAAT-TCTT-ATAATTAGCAGAA
1 TTATT---TAAATTTTAA-TAAGAT-TATTATTATCAATAATAAATATCTTAATCA-TA-TTTAA
** * *
41843410 ATTTGTTATTG
59 A--CATAATTA
*
41843421 TTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATTTAAACATAA
1 TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAAT-ATCTTAATCATATTTAAACATAA
41843485 TTA
65 TTA
41843488 TTA-TTAAAT
1 TTATTTAAAT
41843497 ACATTATAAT
Statistics
Matches: 106, Mismatches: 24, Indels: 33
0.65 0.15 0.20
Matches are distributed among these distances:
65 5 0.05
66 15 0.14
67 30 0.28
68 8 0.08
69 8 0.08
70 24 0.23
71 10 0.09
72 6 0.06
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.46
Consensus pattern (67 bp):
TTATTTAAATTTTAATAAGATTATTATTATCAATAATAAATATCTTAATCATATTTAAACATAAT
TA
Found at i:41843373 original size:156 final size:156
Alignment explanation
Indices: 41843089--41843416 Score: 611
Period size: 156 Copynumber: 2.1 Consensus size: 156
41843079 TAGAATACCC
* *
41843089 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
41843154 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
41843219 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
41843245 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
*
41843310 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
41843375 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
*
41843401 TTAGCAGAAATTTGTT
1 TTAGCAGAAAATTGTT
41843417 ATTGTTATTT
Statistics
Matches: 167, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 167 1.00
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATAATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:41843379 original size:18 final size:17
Alignment explanation
Indices: 41843358--41843392 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
41843348 TTATTATTAA
*
41843358 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
41843376 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
41843393 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:41843383 original size:137 final size:137
Alignment explanation
Indices: 41843275--41843534 Score: 387
Period size: 137 Copynumber: 1.9 Consensus size: 137
41843265 TAAATGATTA
* *
41843275 TTGTTAATGTTATTTAAATTTTAATAAGATTATTATTATCAGTAATAAAT-ATCTTAATCATATT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATT
* * * *
41843339 TAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTA
65 TAAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAAGAAAATTCTTATAAGTA
*
41843404 GCAGAAAT
130 GAAGAAAT
*
41843412 TTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
1 TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
**** *
41843477 AAACATAATTATTATTAAATACATTATAATTTTGGTATATAATTTAATAAAATTCTTA
66 AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAAGAAAATTCTTA
41843535 ATAATTCATA
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
137 111 0.98
138 2 0.02
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (137 bp):
TTGTTAATGTTATTTAAATTTTAATAAGATTATTAATATCAATAATAAATAATTTAATCATATTT
AAACATAATTATTATTAAATACATTATAATTAAAATATATAATTTAAGAAAATTCTTATAAGTAG
AAGAAAT
Found at i:41843574 original size:137 final size:135
Alignment explanation
Indices: 41843296--41843574 Score: 332
Period size: 137 Copynumber: 2.0 Consensus size: 135
41843286 ATTTAAATTT
* *
41843296 TAATAAGATTATTATTATCAGTAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
1 TAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
* * * *
41843361 TATTTTAATTAAAATATATAATTTAATAAAATTCTTATAATTAGCAGAAATTTGTTATTGTTATT
66 CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTA-CA-AAATTTCTTATTGTTACT
* **
41843426 TAAATTT
129 CAAATCA
41843433 TAATAAGATTATTAATATCAATAATAAATAAT-TTAATCATATTTAAACATAATTATTATTAAAT
1 TAATAAGATTATTAATATCAATAATAAAT-ATCTTAATCATATTTAAACATAATTATTATTAAAT
**** *
41843497 ACATTATAATTTTGGTATATAATTTAATAAAATTCTTAATAATT-C-ATA-TTCTTATATGAATT
65 ACATTATAATTAAAATATATAATTTAATAAAATTCTT-ATAATTACAAAATTTCTTAT-TG---T
41843559 TACTCAAATCA
125 TACTCAAATCA
41843570 TAATA
1 TAATA
41843575 TAATGAAGAT
Statistics
Matches: 122, Mismatches: 14, Indels: 12
0.82 0.09 0.08
Matches are distributed among these distances:
133 6 0.05
134 4 0.03
136 1 0.01
137 103 0.84
138 8 0.07
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.45
Consensus pattern (135 bp):
TAATAAGATTATTAATATCAATAATAAATATCTTAATCATATTTAAACATAATTATTATTAAATA
CATTATAATTAAAATATATAATTTAATAAAATTCTTATAATTACAAAATTTCTTATTGTTACTCA
AATCA
Found at i:41845870 original size:37 final size:37
Alignment explanation
Indices: 41845805--41845986 Score: 296
Period size: 37 Copynumber: 5.0 Consensus size: 37
41845795 TACGTATGAT
* *
41845805 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
41845840 CACCTATCACTTTGTTTCTTGATCACATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
41845877 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
41845914 CACTTACCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
41845951 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAG
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAG
41845987 ATAAAGCTAT
Statistics
Matches: 136, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
35 9 0.07
36 3 0.02
37 124 0.91
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:41846002 original size:46 final size:46
Alignment explanation
Indices: 41845951--41846317 Score: 437
Period size: 46 Copynumber: 7.6 Consensus size: 46
41845941 TAAGTGTAGC
* ***
41845951 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGATAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
41845997 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
41846043 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
41846095 CACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
41846147 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
41846193 CACTTATCACTTTATCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* ** *
41846239 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
*
41846291 CACTTATCACTTTATCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
41846318 AGTACTCAAA
Statistics
Matches: 290, Mismatches: 18, Indels: 26
0.87 0.05 0.08
Matches are distributed among these distances:
46 154 0.53
48 1 0.00
49 1 0.00
50 2 0.01
51 3 0.01
52 129 0.44
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:41846074 original size:52 final size:52
Alignment explanation
Indices: 41845994--41846311 Score: 426
Period size: 52 Copynumber: 6.3 Consensus size: 52
41845984 TAGATAAAGC
* *
41845994 TATCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCAC-TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
41846047 TATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * *
41846099 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
41846151 TATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
*
41846197 TATCAC-TTT-A----TCACTTGATCAGATAAGTATAGCCGAAGCTATTACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
* * ** *
41846243 TATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACT
1 TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
41846295 TATCACTTTATCACTTG
1 TATCACTTT-TCACTTG
41846312 ATCAGAAGTA
Statistics
Matches: 239, Mismatches: 16, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
46 84 0.35
47 2 0.01
48 2 0.01
52 133 0.56
53 18 0.08
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
TATCACTTTTCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACT
Found at i:41846153 original size:196 final size:196
Alignment explanation
Indices: 41845951--41846303 Score: 598
Period size: 196 Copynumber: 1.8 Consensus size: 196
41845941 TAAGTGTAGC
* * * * *
41845951 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGATAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGACAAAGCTATCACTTATCACTTTATCACT
*
41846016 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
* *
41846081 GTAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
131 GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
41846146 T
196 T
* *
41846147 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGACAAAGCTATCACTTATCACTTTATCACT
*
41846212 TGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
*
41846277 GTAGCTAAAGCTACCACTTATCACTTT
131 GTAGCCAAAGCTACCACTTATCACTTT
41846304 ATCACTTGAT
Statistics
Matches: 145, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
196 145 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (196 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGACAAAGCTATCACTTATCACTTTATCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGT
GTAGCCAAAGCTACCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTA
T
Found at i:41846306 original size:98 final size:97
Alignment explanation
Indices: 41845951--41846317 Score: 492
Period size: 98 Copynumber: 3.7 Consensus size: 97
41845941 TAAGTGTAGC
* ** * *
41845951 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGATAAAGCTATCACTTATCACTTTGTCTCT
1 CACTT-TCAC-TTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACT
41846016 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
64 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
41846050 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTTG
1 CAC-TTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTT--A----
* *
41846115 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
59 TCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
41846154 CAC--T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTATCACTTG
1 CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
*
41846214 ATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 ATCAGATAAGTATAGCCGAAGCTATCACTTAT
* *
41846246 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTT
1 CACTTT-CACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTT
41846311 GATCAGA
65 GATCAGA
41846318 AGTACTCAAA
Statistics
Matches: 239, Mismatches: 16, Indels: 27
0.85 0.06 0.10
Matches are distributed among these distances:
92 39 0.16
94 1 0.00
96 1 0.00
98 149 0.62
99 7 0.03
100 2 0.01
101 1 0.00
104 39 0.16
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (97 bp):
CACTTTCACTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTATCACTTG
ATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:41850086 original size:145 final size:145
Alignment explanation
Indices: 41849889--41850199 Score: 570
Period size: 145 Copynumber: 2.2 Consensus size: 145
41849879 ACATTAACAA
*
41849889 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGTTTTTTAATCAAGTTATTTTTTAA
1 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
* *
41849954 TCAATCATAATAACAATGAATATTTGTTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
66 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
41850019 CCAATTTTAATATAT
131 CCAATTTTAATATAT
*
41850034 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTGTTTTTTAA
1 TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
*
41850099 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGAT
66 TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
41850164 CCAATTTTAATATAT
131 CCAATTTTAATATAT
41850179 TGAATATTTGTTTT-TAATCAA
1 TGAATATTTGTTTTCTAATCAA
41850200 GTTGTTTACT
Statistics
Matches: 161, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
144 7 0.04
145 154 0.96
ACGTcount: A:0.35, C:0.10, G:0.08, T:0.47
Consensus pattern (145 bp):
TGAATATTTGTTTTCTAATCAACAATGTTACCAAATACTTGGTTTTTAATCAAGTTATTTTTTAA
TCAATCATAATAACAAAGAATATTTATTTTTTAATCAAGTTGTTTAATTGATTATATCTAATGAT
CCAATTTTAATATAT
Found at i:41850225 original size:63 final size:64
Alignment explanation
Indices: 41850116--41850239 Score: 214
Period size: 63 Copynumber: 2.0 Consensus size: 64
41850106 TAATAACAAA
* *
41850116 GAATATTTATTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATATATT
1 GAATATTTAGTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATATATT
*
41850180 GAATATTT-GTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTTATAT
1 GAATATTTAGTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATAT
41850240 GAATTTACTC
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
63 49 0.86
64 8 0.14
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (64 bp):
GAATATTTAGTTTTTAATCAAGTTGTTTACTTGATTATACCTAATGATCCAATTTTAATATATT
Found at i:41861570 original size:16 final size:18
Alignment explanation
Indices: 41861535--41861572 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
41861525 ATCCTTATTT
41861535 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
41861553 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
41861569 AAAT
1 AAAT
41861573 TCCTATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:41864728 original size:7 final size:7
Alignment explanation
Indices: 41864716--41864742 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
41864706 TGCGGAAATA
41864716 TAAATTT
1 TAAATTT
41864723 TAAATTT
1 TAAATTT
41864730 TAAATTT
1 TAAATTT
41864737 TAAATT
1 TAAATT
41864743 AACATTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TAAATTT
Found at i:41865227 original size:23 final size:25
Alignment explanation
Indices: 41865197--41865247 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
41865187 AAGTGATTAA
41865197 ATAATAA-TCCA-AACAAATTAAAT
1 ATAATAATTCCACAACAAATTAAAT
* *
41865220 ATAATAATTTCACAACAATTTAAAT
1 ATAATAATTCCACAACAAATTAAAT
41865245 ATA
1 ATA
41865248 CCTAATAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.29
24 3 0.12
25 14 0.58
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (25 bp):
ATAATAATTCCACAACAAATTAAAT
Found at i:41866118 original size:11 final size:11
Alignment explanation
Indices: 41866102--41866131 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
41866092 GTAAAAAGGC
41866102 AGAAATAGCAG
1 AGAAATAGCAG
41866113 AGAAATAGCAG
1 AGAAATAGCAG
41866124 AGAAATAG
1 AGAAATAG
41866132 AAGCAAGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.27, T:0.10
Consensus pattern (11 bp):
AGAAATAGCAG
Found at i:41866617 original size:33 final size:33
Alignment explanation
Indices: 41866567--41866639 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
41866557 CGGAGTCGTT
*
41866567 GCCGTAGACTGGCGGCCGTCATGACAGTGACTC
1 GCCGGAGACTGGCGGCCGTCATGACAGTGACTC
* *
41866600 GCCGGAGACTGGTGGCCGTCGTGACAGTGACTC
1 GCCGGAGACTGGCGGCCGTCATGACAGTGACTC
*
41866633 GCTGGAG
1 GCCGGAG
41866640 CCAAGGCTAG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.16, C:0.27, G:0.38, T:0.18
Consensus pattern (33 bp):
GCCGGAGACTGGCGGCCGTCATGACAGTGACTC
Found at i:41870104 original size:22 final size:22
Alignment explanation
Indices: 41870022--41870101 Score: 112
Period size: 22 Copynumber: 3.7 Consensus size: 22
41870012 AATCTTCAAG
41870022 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
41870041 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
41870063 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
41870085 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
41870102 GATTTAATTT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 13 0.24
22 30 0.55
23 12 0.22
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:41871812 original size:49 final size:51
Alignment explanation
Indices: 41871747--41872083 Score: 290
Period size: 51 Copynumber: 6.7 Consensus size: 51
41871737 TATCATTCGA
*
41871747 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AGTT-TTACAG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTCTTACGG
* *
41871796 TTCACGTAGTAGCCTTCACATAGTACTACACACGTGATCAA-TTTTTACGG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTCTTACGG
* *
41871846 CT-TACGTAGTAGCC-TCACACAGTACTACACACGTGATCAAAGCTTCTT--GG
1 -TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTCTTACGG
* * * * * *
41871896 TACACATAGTAGCC-TCACTTAGTACTACACATGTAATCGTAG-T-TTACCAAG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAGTTCTTA-C-GG
* * * *
41871947 -ACACGTAGTAGCATTCACACAGTACTACACGCGTGCTCAAAGCTTCTT--GG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AAG-TTCTTACGG
* * * * *
41871997 TACACATAGTAGCCTTCACTTAGTACTACACATGTGA-CCA-TTACTTATCGA
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTT-CTTA-CGG
*
41872048 TACACGTAGTAGCCTTCACACAGTACTACACACGTG
1 TACACGTAGTAGCCTTCACATAGTACTACACACGTG
41872084 TTCATCGATA
Statistics
Matches: 230, Mismatches: 38, Indels: 38
0.75 0.12 0.12
Matches are distributed among these distances:
47 4 0.02
48 4 0.02
49 65 0.28
50 66 0.29
51 84 0.37
52 4 0.02
53 1 0.00
54 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (51 bp):
TACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTCTTACGG
Found at i:41872026 original size:26 final size:26
Alignment explanation
Indices: 41871997--41872079 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
41871987 AGCTTCTTGG
41871997 TACACATAGTAGCCTTCACTTAGTAC
1 TACACATAGTAGCCTTCACTTAGTAC
41872023 TACACAT-GT-GACCATT-ACTTA-T-C
1 TACACATAGTAG-CC-TTCACTTAGTAC
* **
41872046 GATACACGTAGTAGCCTTCACACAGTAC
1 --TACACATAGTAGCCTTCACTTAGTAC
41872074 TACACA
1 TACACA
41872080 CGTGTTCATC
Statistics
Matches: 44, Mismatches: 4, Indels: 18
0.67 0.06 0.27
Matches are distributed among these distances:
23 1 0.02
24 2 0.05
25 17 0.39
26 21 0.48
27 2 0.05
28 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (26 bp):
TACACATAGTAGCCTTCACTTAGTAC
Done.