Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 16 of 172
Found at i:4156144 original size:30 final size:31
Alignment explanation
Indices: 4156108--4156167 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
4156098 AAACCTTTTA
*
4156108 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
4156138 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
4156168 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:4156284 original size:17 final size:18
Alignment explanation
Indices: 4156245--4156300 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
4156235 TACTCCCCTA
4156245 TTTACTTTCCCTC-AAAC-T
1 TTTA-TTTCCC-CAAAACTT
4156263 TTTA-TTCCCCAAAACTT
1 TTTATTTCCCCAAAACTT
*
4156280 TTTATTTTCCCCTAAACTT
1 TTTA-TTTCCCCAAAACTT
4156299 TT
1 TT
4156301 ACTTCTCACC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
15 1 0.03
16 9 0.27
17 5 0.15
18 4 0.12
19 14 0.42
ACGTcount: A:0.23, C:0.29, G:0.00, T:0.48
Consensus pattern (18 bp):
TTTATTTCCCCAAAACTT
Found at i:4156445 original size:17 final size:17
Alignment explanation
Indices: 4156425--4156471 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
4156415 CACATTTTAT
4156425 ATTATTTATATTATTGA
1 ATTATTTATATTATTGA
4156442 ATTATTTAGTCA-TATTGA
1 ATTATTTA-T-ATTATTGA
4156460 A-TATTTATATTA
1 ATTATTTATATTA
4156472 AAATTGAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.04
16 3 0.11
17 14 0.52
18 8 0.30
19 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.55
Consensus pattern (17 bp):
ATTATTTATATTATTGA
Found at i:4156925 original size:5 final size:5
Alignment explanation
Indices: 4156915--4156940 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
4156905 CTCGAAAATT
4156915 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
4156941 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:4161658 original size:25 final size:25
Alignment explanation
Indices: 4161624--4161673 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
4161614 TGGTTTTATA
4161624 TGTTAATGACATACTGATTGTCAAT
1 TGTTAATGACATACTGATTGTCAAT
4161649 TGTTAATGACATACTGATTGTCAAT
1 TGTTAATGACATACTGATTGTCAAT
4161674 AATAAGTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (25 bp):
TGTTAATGACATACTGATTGTCAAT
Found at i:4162682 original size:11 final size:11
Alignment explanation
Indices: 4162666--4162706 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
4162656 TATTGGTCAA
*
4162666 TCTTCCTCTAG
1 TCTTCCTCGAG
4162677 TCTTCCTCGAG
1 TCTTCCTCGAG
*
4162688 TCTTCTTCGAG
1 TCTTCCTCGAG
*
4162699 TCTCCCTC
1 TCTTCCTC
4162707 ACATGTCGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.07, C:0.39, G:0.12, T:0.41
Consensus pattern (11 bp):
TCTTCCTCGAG
Found at i:4164110 original size:7 final size:7
Alignment explanation
Indices: 4164098--4164279 Score: 139
Period size: 7 Copynumber: 26.0 Consensus size: 7
4164088 TAAAAAAATT
4164098 AATTGAG
1 AATTGAG
4164105 AATTGAG
1 AATTGAG
*
4164112 AATTAAG
1 AATTGAG
4164119 AATTGAG
1 AATTGAG
*
4164126 GATTGAG
1 AATTGAG
*
4164133 GATTGAG
1 AATTGAG
* *
4164140 GATCGAG
1 AATTGAG
*
4164147 AAATGAG
1 AATTGAG
4164154 AATTGAG
1 AATTGAG
* *
4164161 AAATGAA
1 AATTGAG
4164168 AATTGAG
1 AATTGAG
*
4164175 GATTGAG
1 AATTGAG
*
4164182 AATTTAG
1 AATTGAG
* *
4164189 GATTAAG
1 AATTGAG
*
4164196 GATTGAG
1 AATTGAG
*
4164203 AAATGAG
1 AATTGAG
4164210 AATTGAG
1 AATTGAG
* *
4164217 AAATGAA
1 AATTGAG
4164224 AATTGAG
1 AATTGAG
*
4164231 GATTGAG
1 AATTGAG
*
4164238 AATTTAG
1 AATTGAG
* *
4164245 GATTAAG
1 AATTGAG
*
4164252 GATTGAG
1 AATTGAG
* *
4164259 TATTGGG
1 AATTGAG
*
4164266 TATTGAG
1 AATTGAG
*
4164273 TATTGAG
1 AATTGAG
4164280 TTGAGAAGAA
Statistics
Matches: 141, Mismatches: 34, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 141 1.00
ACGTcount: A:0.41, C:0.01, G:0.30, T:0.29
Consensus pattern (7 bp):
AATTGAG
Found at i:4164255 original size:56 final size:56
Alignment explanation
Indices: 4164098--4164258 Score: 250
Period size: 56 Copynumber: 2.9 Consensus size: 56
4164088 TAAAAAAATT
* * * * * * * *
4164098 AATTGAGAATTGAGAATTAAGAATTGAGGATTGAGGATTGAGGATCGAGAAATGAG
1 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAAATGAG
4164154 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAAATGAG
1 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAAATGAG
4164210 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAG
1 AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAG
4164259 TATTGGGTAT
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 97 1.00
ACGTcount: A:0.43, C:0.01, G:0.30, T:0.27
Consensus pattern (56 bp):
AATTGAGAAATGAAAATTGAGGATTGAGAATTTAGGATTAAGGATTGAGAAATGAG
Found at i:4175025 original size:12 final size:13
Alignment explanation
Indices: 4175008--4175044 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
4174998 GAACCGGACA
4175008 CGAACCGAA-CTC
1 CGAACCGAAGCTC
4175020 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
4175032 CGAACCGTAGCTC
1 CGAACCGAAGCTC
4175045 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:4176673 original size:6 final size:6
Alignment explanation
Indices: 4176662--4176688 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
4176652 TGCATTTTCA
4176662 AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAA
4176689 TATGACCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:4178198 original size:8 final size:8
Alignment explanation
Indices: 4178185--4178226 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
4178175 AATTAAAATT
4178185 AAATTTTA
1 AAATTTTA
*
4178193 AAA-TTTG
1 AAATTTTA
*
4178200 AAA-TATA
1 AAATTTTA
4178207 AAATTTTA
1 AAATTTTA
4178215 AAATTTTA
1 AAATTTTA
4178223 AAAT
1 AAAT
4178227 AAAAATAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 11 0.38
8 18 0.62
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (8 bp):
AAATTTTA
Found at i:4178210 original size:22 final size:21
Alignment explanation
Indices: 4178179--4178230 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
4178169 ACTAATAATT
*
4178179 AAAATTAAATTTTAAAATTTG
1 AAAATAAAATTTTAAAATTTG
*
4178200 AAATATAAAATTTTAAAATTTT
1 AAA-ATAAAATTTTAAAATTTG
4178222 AAAATAAAA
1 AAAATAAAA
4178231 ATAAAAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 9 0.32
22 19 0.68
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
AAAATAAAATTTTAAAATTTG
Found at i:4179654 original size:21 final size:21
Alignment explanation
Indices: 4179630--4179672 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
4179620 ATTTTATTAC
4179630 TTTTAAATATTATTTG-ATAAA
1 TTTTAAA-ATTATTTGTATAAA
*
4179651 TTTTCAAATTATTTGTATAAA
1 TTTTAAAATTATTTGTATAAA
4179672 T
1 T
4179673 ATTTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (21 bp):
TTTTAAAATTATTTGTATAAA
Found at i:4182032 original size:22 final size:22
Alignment explanation
Indices: 4182004--4182045 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
4181994 GTAATATAAC
4182004 TTAGTTAAAATTTTCTATTAGT
1 TTAGTTAAAATTTTCTATTAGT
4182026 TTAGTTAAAATTTTCTATTA
1 TTAGTTAAAATTTTCTATTA
4182046 ATCATTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (22 bp):
TTAGTTAAAATTTTCTATTAGT
Found at i:4185321 original size:22 final size:22
Alignment explanation
Indices: 4185274--4185321 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
4185264 TAAATTATAT
*
4185274 TAAACTAATTCTAAATCCAAAT
1 TAAACTAATTCTAAATCCAAAC
4185296 TAAACTATACTTCT-AAT-CAAAC
1 TAAACTA-A-TTCTAAATCCAAAC
4185318 TAAA
1 TAAA
4185322 ATTTGAAGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 15 0.65
23 4 0.17
24 4 0.17
ACGTcount: A:0.50, C:0.19, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAACTAATTCTAAATCCAAAC
Found at i:4188938 original size:119 final size:120
Alignment explanation
Indices: 4188728--4188950 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
4188718 TCCTCGTTCA
*
4188728 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
4188793 TTAGTAACTCGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
4188848 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
4188910 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCATCGGGACTTAACCCGGA
4188951 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:4188950 original size:40 final size:40
Alignment explanation
Indices: 4188726--4188950 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
4188716 GCTCCTCGTT
* *
4188726 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
4188766 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
4188806 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
4188846 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
4188885 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
4188926 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
4188951 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 117 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:4191300 original size:3 final size:3
Alignment explanation
Indices: 4191294--4191391 Score: 52
Period size: 3 Copynumber: 32.7 Consensus size: 3
4191284 TTGATAAAAA
* * * * * * * * *
4191294 AAT AAT ACT ATT AAT AAT AAT AGT AGT AGT AGT AAT AAC AAC AAC AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
4191342 AAT AAT AAT GAT AAT AAC AGT AAT GAT AGT AAT AAT AGT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
4191390 AA
1 AA
4191392 ATTAATATTA
Statistics
Matches: 74, Mismatches: 21, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 74 1.00
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:4191365 original size:18 final size:18
Alignment explanation
Indices: 4191344--4191391 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
4191334 ACAACAATAA
4191344 TAATAATGATAATAACAG
1 TAATAATGATAATAACAG
* *
4191362 TAATGAT-AGTAATAATAG
1 TAATAATGA-TAATAACAG
4191380 TAATAATGATAA
1 TAATAATGATAA
4191392 ATTAATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 1 0.04
18 23 0.92
19 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.12, T:0.31
Consensus pattern (18 bp):
TAATAATGATAATAACAG
Found at i:4193026 original size:50 final size:50
Alignment explanation
Indices: 4192959--4194056 Score: 690
Period size: 50 Copynumber: 22.1 Consensus size: 50
4192949 TAACTTCAAT
* * * * *
4192959 CTGCAACG-CCGGAGAAGTAAGATTTATTGTTGTAGCTTTAACCTGCTTCA
1 CTGCAACGTCAGG-GAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* *** *
4193009 CTGCAACATCAGGGAAGTAAGATTTGCTGTTGTAGCTTCAATCTGTTTTA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
** * ** * * * *
4193059 CTATAACGTTAGACAAGTAAGATTCGTTGTTGTAGCTTTAATCTATTTAA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
4193109 CTGCAATGTCGGGGAAGCAAG---C--TGTTGTAACTTTAATCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * *
4193154 CTGC-ACTGCCAGGGAAGTAAGATTCGTTGTTGTAGCTTCAATCTATTTAA
1 CTGCAAC-GTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
4193204 CTGCAATGTCGGGGAAGCAAGATTCACTGTTGTAGCTTCAACCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * **
4193254 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTGAA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * *** ** *
4193304 CTGCAATGTCGGGGCAGCAAGATTTGCTGTTGTAGCTTCAATCCATTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * ** * * * *
4193354 CTAC-ACCTCCAGGGAAGTAAGATTCGCTATAGTAGCTTCAATCTATTTAA
1 CTGCAACGT-CAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
4193404 CTGCAATGTCGGGGAAGCAAGATTCACTGTGGTAGCTTCAATCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * ** ** * *
4193454 CTGCACCGCCAGAAAAGTAAGATTCGCTGTTGTAGCTTCAATATGTTTAA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * **** *
4193504 TTGCAATGTCGGGGGAGCAAGATTCGCCATTGTAGCTTCAATCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
4193554 CTGTAACGTTAGAGAAGTAAGATTCATTGTTGTAGCTTTACTCTGTTTAA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * * * *
4193604 ATGGAATGTCCGGGAAGCAAGATTCACTGTTGTAACTTTAATCTGTTTCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
4193654 TTGC-ACTGCCAGGGAAGTAAGATTCACTGTTGTAGGTTCAATCTATTTAA
1 CTGCAAC-GTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
4193704 CTGTAATGTCAGGGAATTAAGATTCACTGTTGTAGCTTCAATTTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* *
4193754 CTGC-AC-TGCTAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAA
1 CTGCAACGT-C-AGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* ** * ** * * *
4193804 CTGCAATGTTGGGGAAGCAAGATTCGCTATTTTAGCTTCAATCTGTTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * ** *
4193854 CTAC-ACTGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTGCAAC-GTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
** * * *** * * * *
4193904 CTATATCGCCAGGGAAGTAAGATTTGCTATTATAGCTTCAATCTATTTAA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * * * * *
4193954 CTGTAATGTCGGGGAAGTAAGATTCACTGTTATAGCTTCAATCTGTTGCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
* * ** * ** * * *
4194004 CTACACCACCAGGGAAGGAAGATTCGCTATTGTAGCTTCAATCTATTCCA
1 CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
4194054 CTG
1 CTG
4194057 TAATGCCAAA
Statistics
Matches: 801, Mismatches: 229, Indels: 36
0.75 0.21 0.03
Matches are distributed among these distances:
44 1 0.00
45 34 0.04
47 1 0.00
48 2 0.00
49 6 0.01
50 747 0.93
51 9 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (50 bp):
CTGCAACGTCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTGTTTCA
Found at i:4193286 original size:100 final size:100
Alignment explanation
Indices: 4192959--4193897 Score: 1053
Period size: 100 Copynumber: 9.4 Consensus size: 100
4192949 TAACTTCAAT
* * * * ** * ** *
4192959 CTGCAACGCC-GGAGAAGTAAGATTTATTGTTGTAGCTTTAACCTGCTTCACTGCAACATCAGGG
1 CTGCACCGCCAGG-GAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGG
* ** **
4193023 AAGTAAGATTTGCTGTTGTAGCTTCAATCTGTTTTA
65 AAGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
** * ** ** * *
4193059 CTATAACGTTAGACAAGTAAGATTCGTTGTTGTAGCTTTAATCTATTTAACTGCAATGTCGGGGA
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
* *
4193124 AGCAAG-----CTGTTGTAACTTTAATCTGTTCCA
66 AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
* *
4193154 CTGCACTGCCAGGGAAGTAAGATTCGTTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
*
4193219 AGCAAGATTCACTGTTGTAGCTTCAACCTGTTCCA
66 AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
* *
4193254 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTGAACTGCAATGTCGGGGC
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
** **
4193319 AGCAAGATTTGCTGTTGTAGCTTCAATCCATTCCA
66 AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
* * ** * *
4193354 CTACACCTCCAGGGAAGTAAGATTCGCTATAGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
*
4193419 AGCAAGATTCACTGTGGTAGCTTCAATCTGTTCCA
66 AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
** ** * * * *
4193454 CTGCACCGCCAGAAAAGTAAGATTCGCTGTTGTAGCTTCAATATGTTTAATTGCAATGTCGGGGG
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
* **
4193519 AGCAAGATTCGCCATTGTAGCTTCAATCTGTTCCA
66 AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
* * ** * * * * * * *
4193554 CTGTAACGTTAGAGAAGTAAGATTCATTGTTGTAGCTTTACTCTGTTTAAATGGAATGTCCGGGA
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
* * *
4193619 AGCAAGATTCACTGTTGTAACTTTAATCTGTTTCA
66 AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
* * * * * *
4193654 TTGCACTGCCAGGGAAGTAAGATTCACTGTTGTAGGTTCAATCTATTTAACTGTAATGTCAGGGA
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
** *
4193719 ATTAAGATTCACTGTTGTAGCTTCAATTTGTTCCA
66 AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
* * *
4193754 CTGCACTGCTAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTTGGGGA
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
* * *
4193819 AGCAAGATTCGCTATTTTAGCTTCAATCTGTTCCA
66 AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
* * **
4193854 CTACACTGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCT
1 CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCT
4193898 GTTCCACTAT
Statistics
Matches: 707, Mismatches: 126, Indels: 12
0.84 0.15 0.01
Matches are distributed among these distances:
95 82 0.12
100 624 0.88
101 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (100 bp):
CTGCACCGCCAGGGAAGTAAGATTCATTGTTGTAGCTTCAATCTATTTAACTGCAATGTCGGGGA
AGCAAGATTCACTGTTGTAGCTTCAATCTGTTCCA
Found at i:4193919 original size:100 final size:99
Alignment explanation
Indices: 4193020--4194056 Score: 996
Period size: 100 Copynumber: 10.4 Consensus size: 99
4193010 TGCAACATCA
* * ** ** ** **
4193020 GGGAAGTAAGATTTGCTGTTGTAGCTTCAATCTGTTTTACTATAAC-GTTAGACAAGTAAGATTC
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACT-GCACTGCCAGGGAAGTAAGATTC
** *
4193084 GTTGTTGTAGCTTTAATCTATTTAACTGCAATGTCG
65 ACTGTTGTAGCTTCAATCTATTTAACTG-AATGTCG
* * *
4193120 GGGAAGC-A-A---GCTGTTGTAACTTTAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCA
*
4193180 TTGTTGTAGCTTCAATCTATTTAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTG-AATGTCG
* * *
4193215 GGGAAGCAAGATTCACTGTTGTAGCTTCAACCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCA
* *
4193280 TTGTTGTAGCTTCAATCTATTGAACTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTG-AATGTCG
* * ** *
4193315 GGGCAGCAAGATTTGCTGTTGTAGCTTCAATCCATTCCACTACACCT-CCAGGGAAGTAAGATTC
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCA-CTGCCAGGGAAGTAAGATTC
* * *
4193379 GCTATAGTAGCTTCAATCTATTTAACTGCAATGTCG
65 ACTGTTGTAGCTTCAATCTATTTAACTG-AATGTCG
* * * ** *
4193415 GGGAAGCAAGATTCACTGTGGTAGCTTCAATCTGTTCCACTGCACCGCCAGAAAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCA
* * *
4193480 CTGTTGTAGCTTCAATATGTTTAATTGCAATGTCG
66 CTGTTGTAGCTTCAATCTATTTAACTG-AATGTCG
* ** * ** *
4193515 GGGGAGCAAGATTCGCCATTGTAGCTTCAATCTGTTCCACTGTAAC-GTTAGAGAAGTAAGATTC
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTG-CACTGCCAGGGAAGTAAGATTC
* * * * * *
4193579 ATTGTTGTAGCTTTACTCTGTTTAAATGGAATGTCC
65 ACTGTTGTAGCTTCAATCTATTTAACT-GAATGTCG
* * * * *
4193615 GGGAAGCAAGATTCACTGTTGTAACTTTAATCTGTTTCATTGCACTGCCAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCA
* *
4193680 CTGTTGTAGGTTCAATCTATTTAACTGTAATGTCA
66 CTGTTGTAGCTTCAATCTATTTAACTG-AATGTCG
** * * *
4193715 GGGAATTAAGATTCACTGTTGTAGCTTCAATTTGTTCCACTGCACTGCTAGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCA
* *
4193780 TTGTTGTAGCTTCAATCTATTTAACTGCAATGTTG
66 CTGTTGTAGCTTCAATCTATTTAACTG-AATGTCG
* * * *
4193815 GGGAAGCAAGATTCGCTATTTTAGCTTCAATCTGTTCCACTACACTGCCAGGGAAGTAAGATTCG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCA
* ** * *
4193880 CTGTTGTAGCTTCAATCTGTTCCACT-ATATCGCCA
66 CTGTTGTAGCTTCAATCTATTTAACTGA-AT-GTCG
* * * * * ** * * * *
4193915 GGGAAGTAAGATTTGCTATTATAGCTTCAATCTATTTAACTGTAATGTCGGGGAAGTAAGATTCA
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCA
* * ** *** *
4193980 CTGTTATAGCTTCAATCTGTTGCACT-ACACCACCA
66 CTGTTGTAGCTTCAATCTATTTAACTGA-A-TGTCG
* * *
4194015 GGGAAGGAAGATTCGCTATTGTAGCTTCAATCTATTCCACTG
1 GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTG
4194057 TAATGCCAAA
Statistics
Matches: 789, Mismatches: 133, Indels: 30
0.83 0.14 0.03
Matches are distributed among these distances:
94 2 0.00
95 79 0.10
96 1 0.00
97 1 0.00
98 2 0.00
99 7 0.01
100 693 0.88
101 4 0.01
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33
Consensus pattern (99 bp):
GGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCA
CTGTTGTAGCTTCAATCTATTTAACTGAATGTCG
Found at i:4194343 original size:88 final size:88
Alignment explanation
Indices: 4194229--4194652 Score: 503
Period size: 88 Copynumber: 4.8 Consensus size: 88
4194219 GTGTCTTTGG
* * * *
4194229 TCTACTTTGCTGGCAATACAGGAAGACTAGATCTGCTATTTTTAACCTACTCCACTGCTGCTCAG
1 TCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAG
* * *
4194294 GGAGACAAGGCT-AGTATCCTCAA
66 GGAGATAAGGCTGAG-ATCTTCGA
* * *
4194317 TCTACTTCGCTGCCAATACAAGAAGACAAGATCTGCTAGTTTCAACCTACTCCACTGCTACTCAG
1 TCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAG
* * *
4194382 GAAGATAAGGTTGAGGTCTTCGA
66 GGAGATAAGGCTGAGATCTTCGA
** * * ** * ** *
4194405 TCTACTTCATTGCTAATACAGGAAGACAAGATCTGTTATCTTT-AGTCTGCTCGGCTGCTACTCA
1 TCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTAT-TTTCAACCTACTCCACTGCTGCTCA
4194469 GGGAGATAAGGCT-AGTATCTTCGA
65 GGGAGATAAGGCTGAG-ATCTTCGA
* * * *
4194493 TCTATTTTGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACCGCTGCTCAG
1 TCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAG
*
4194558 GGAGATAAGGCTGAGGTCTTCGA
66 GGAGATAAGGCTGAGATCTTCGA
* * * * *
4194581 TCTTCTTCGCTGTCAATACAGGAAGACAAGATCTGCTATTTTCAACTTATTCCACTGCTGCTCAA
1 TCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAG
4194646 GGAGATA
66 GGAGATA
4194653 GGATTTATGG
Statistics
Matches: 280, Mismatches: 51, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
87 5 0.02
88 268 0.96
89 7 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (88 bp):
TCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGCTCAG
GGAGATAAGGCTGAGATCTTCGA
Found at i:4194386 original size:44 final size:44
Alignment explanation
Indices: 4194247--4194386 Score: 117
Period size: 44 Copynumber: 3.2 Consensus size: 44
4194237 GCTGGCAATA
* * * *
4194247 CAGGAAGACTAGATCTGCTATTTTTAACCTACTCCACTGCTGCT
1 CAGGAAGACAAGATCTGCTAGTTTCAACCTACTCCACTGCTACT
* * * * * *
4194291 CAGGGAGACAAG----GCTAGTATCCTCAATCTACTTCGCTGCCAAT
1 CAGGAAGACAAGATCTGCTAGT-T--TCAACCTACTCCACTGCTACT
*
4194334 ACAAGAAGACAAGATCTGCTAGTTTCAACCTACTCCACTGCTACT
1 -CAGGAAGACAAGATCTGCTAGTTTCAACCTACTCCACTGCTACT
4194379 CAGGAAGA
1 CAGGAAGA
4194387 TAAGGTTGAG
Statistics
Matches: 70, Mismatches: 18, Indels: 16
0.67 0.17 0.15
Matches are distributed among these distances:
40 5 0.07
41 1 0.01
43 14 0.20
44 27 0.39
45 16 0.23
47 1 0.01
48 6 0.09
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (44 bp):
CAGGAAGACAAGATCTGCTAGTTTCAACCTACTCCACTGCTACT
Found at i:4195919 original size:15 final size:15
Alignment explanation
Indices: 4195899--4195942 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
4195889 CCTTAGCCTC
4195899 TCCATTTTT-ACTTTT
1 TCCATTTTTCA-TTTT
4195914 TCCATTTTTCATTTT
1 TCCATTTTTCATTTT
4195929 T-CA-TTTTCATTTT
1 TCCATTTTTCATTTT
4195942 T
1 T
4195943 TTTCATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 11 0.39
14 2 0.07
15 14 0.50
16 1 0.04
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (15 bp):
TCCATTTTTCATTTT
Found at i:4195952 original size:7 final size:7
Alignment explanation
Indices: 4195901--4195942 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
4195891 TTAGCCTCTC
4195901 CATTTTT
1 CATTTTT
4195908 -ACTTTTT
1 CA-TTTTT
4195915 CCATTTTT
1 -CATTTTT
4195923 CATTTTT
1 CATTTTT
4195930 CA-TTTT
1 CATTTTT
4195936 CATTTTT
1 CATTTTT
4195943 TTTCATTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 7 0.23
7 18 0.58
8 5 0.16
9 1 0.03
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:4196891 original size:15 final size:14
Alignment explanation
Indices: 4196859--4196907 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 14
4196849 CTTTTTTATC
*
4196859 ATTTTTT-ATTTTT
1 ATTTTTTGATTTTG
4196872 ATTTTTTGATTTTG
1 ATTTTTTGATTTTG
* *
4196886 ACTTTTTAGATTTAG
1 A-TTTTTTGATTTTG
4196901 ATTTTTT
1 ATTTTTT
4196908 TAAAATTTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 7 0.23
14 11 0.37
15 12 0.40
ACGTcount: A:0.18, C:0.02, G:0.08, T:0.71
Consensus pattern (14 bp):
ATTTTTTGATTTTG
Found at i:4200571 original size:13 final size:13
Alignment explanation
Indices: 4200553--4200577 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4200543 ATGAAATCAA
4200553 ATAATAATATATG
1 ATAATAATATATG
4200566 ATAATAATATAT
1 ATAATAATATAT
4200578 AAAAAAACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
ATAATAATATATG
Found at i:4205545 original size:28 final size:30
Alignment explanation
Indices: 4205508--4205574 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
4205498 TGGCCCTTAA
4205508 GATCCGCGCGCGACCCGACCCGCTACAGGG
1 GATCCGCGCGCGACCCGACCCGCTACAGGG
* * *
4205538 GATCCGCGCGCGGCCCGACCTGCTCCAGGG
1 GATCCGCGCGCGACCCGACCCGCTACAGGG
4205568 GATCCGC
1 GATCCGC
4205575 ACGTTTATGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.13, C:0.43, G:0.34, T:0.09
Consensus pattern (30 bp):
GATCCGCGCGCGACCCGACCCGCTACAGGG
Found at i:4225382 original size:108 final size:108
Alignment explanation
Indices: 4225192--4225412 Score: 334
Period size: 108 Copynumber: 2.0 Consensus size: 108
4225182 GGGCACCTGC
* *
4225192 TTTCATCTTATTCTTTCTGAATCTTAGCAAAATTTGCTATTTTGATTAATTTATTCATTTCGAGA
1 TTTCATCTTATTCATTCTGAATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGA
* * *
4225257 TTTGTTCTCAATAAAATTTCATCTTATCCATTGTGATAATCCT
66 CTTATTCTCAATAAAATTCCATCTTATCCATTGTGATAATCCT
* *
4225300 TTTCATCTTATTCATTCTGAATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTTGAGC
1 TTTCATCTTATTCATTCTGAATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGA
* * * * *
4225365 CTTATTCTCGATTAAATTCCATCTTGTCCATTTTGATAATCTT
66 CTTATTCTCAATAAAATTCCATCTTATCCATTGTGATAATCCT
4225408 TTTCA
1 TTTCA
4225413 AGCATTTTTC
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
108 101 1.00
ACGTcount: A:0.26, C:0.17, G:0.08, T:0.49
Consensus pattern (108 bp):
TTTCATCTTATTCATTCTGAATCTTAGCAAAATTTGCTATCTTGATTAATTTATTCATTTCGAGA
CTTATTCTCAATAAAATTCCATCTTATCCATTGTGATAATCCT
Found at i:4225875 original size:24 final size:24
Alignment explanation
Indices: 4225843--4225900 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
4225833 ATGTCCCAAA
4225843 ATTACAGTGGACTT-AACCTTAAAG
1 ATTACAGTGGA-TTGAACCTTAAAG
* * *
4225867 ATTACAGTGGATTGAACTTTGAAT
1 ATTACAGTGGATTGAACCTTAAAG
4225891 ATTACAGTGG
1 ATTACAGTGG
4225901 GGGCAATCCG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 2 0.07
24 28 0.93
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (24 bp):
ATTACAGTGGATTGAACCTTAAAG
Found at i:4226354 original size:44 final size:42
Alignment explanation
Indices: 4226216--4226661 Score: 194
Period size: 40 Copynumber: 10.6 Consensus size: 42
4226206 TCTTATCAAG
* * *
4226216 TCTTATCTCGCTAAGCAGTAGTGGAGCA-GACAGAAGAAATCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAG--ATCAGA
* * ** * * *
4226259 TCTTATCTTCCTAAGCAGTAGTGAAACAGAATTAAG-TCACCAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATCA--GA
* * * * *
4226302 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTGTAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGA-T-CAGA
* * *
4226346 TCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCG--CATCAAA
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATCAGA
* * * * *
4226386 TCTTATCTCCCTAAGTAGTAGTGGAGCA-GAT-CACATCAGG
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATCAGA
* *
4226426 TCTTATCTCCCTAAGCAGTAGTGGAGT-GGACAGAAGAAACCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAG--ATCAGA
* * * * *
4226469 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGA-T-CAGA
** * *
4226513 TCTTATCTCCCTAAGCAGTAGTGGAACA-AATCG--CATCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATCAGA
* * * *
4226552 GTCTTATCTCCCTAAGTAGTAGTGGAGCA-GACAGAAGAAACTA-A
1 -TCTTATCTCCCTAAGCAGTAGTGGAGTAGGA-TGAAG-ATC-AGA
* * * *
4226596 TCTTATTTCCCTAAGCAGTAGTGGAGCA-CATCG--CATCA-A
1 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGAT-GAAGATCAGA
4226635 GTCTTATCTCCCTAAGCAGTAGTGGAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAG
4226662 CAGACAAAAG
Statistics
Matches: 309, Mismatches: 66, Indels: 59
0.71 0.15 0.14
Matches are distributed among these distances:
39 3 0.01
40 123 0.40
41 3 0.01
42 3 0.01
43 116 0.38
44 59 0.19
45 1 0.00
46 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (42 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGTAGGATGAAGATCAGA
Found at i:4226400 original size:40 final size:40
Alignment explanation
Indices: 4226345--4226665 Score: 277
Period size: 40 Copynumber: 7.8 Consensus size: 40
4226335 AAGATTGTAG
4226345 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
* * *
4226385 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCACATCAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
* * * * *
4226425 GTCTTATCTCCCTAAGCAGTAGTGGAGTGGACAGA-AGAAACCA
1 ATCTTATCTCCCTAAGCAGTAGTGGA---G-CAGATCGCATCAA
* * * * * * * * *
4226468 ATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG--CA-T-CAA
* *
4226512 ATCTTATCTCCCTAAGCAGTAGTGGAACAAATCGCATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
* * * * *
4226552 GTCTTATCTCCCTAAGTAGTAGTGGAGCAGA-CAGAAGAAACTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----GCATCAA
* *
4226595 ATCTTATTTCCCTAAGCAGTAGTGGAGCACATCGCATCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
*
4226635 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA
4226666 CAAAAGAAAC
Statistics
Matches: 216, Mismatches: 51, Indels: 28
0.73 0.17 0.09
Matches are distributed among these distances:
39 3 0.01
40 123 0.57
41 1 0.00
42 2 0.01
43 56 0.26
44 31 0.14
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (40 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAA
Found at i:4226600 original size:210 final size:206
Alignment explanation
Indices: 4226346--4226794 Score: 630
Period size: 210 Copynumber: 2.2 Consensus size: 206
4226336 AGATTGTAGA
* * * *
4226346 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAATCTTATCTCCCTAAGTAGTAGTGGA
1 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA-CGAAACAAATCTTATCTCCCTAAGCAGTAGTGGA
* * ** *
4226411 GCAGATCACATCAGGTCTTATCTCCCTAAGCAGTAGTGGAGTGGACAGAAGAAACCAATCCTATC
65 GCACATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATC
* * * * *
4226476 TCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACA
130 TCCCTGAGAAGCAGTGGAGTAGGTTAAAAATAGTAGATCTTATCTCCCTAAGCAGTAGTAGAACA
4226541 AATCGCATCAAG
195 AATCGCATCAAG
* *
4226553 TCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAGAAACTAATCTTATTTCCCTAAGCAGTAGT
1 TCTTATCTCCCTAAGTAGTAGTGGAGCAGAC----GAAACAAATCTTATCTCCCTAAGCAGTAGT
*
4226618 GGAGCACATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCT
62 GGAGCACATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCT
*
4226683 ATCTCCCTGAGAAGCAGTGGAGTAGGTTAAAAATAGTAGATCTTATCTCTCTAAGCAGTAGTAGA
127 ATCTCCCTGAGAAGCAGTGGAGTAGGTTAAAAATAGTAGATCTTATCTCCCTAAGCAGTAGTAGA
* * *
4226748 GCAGATCGCATCCAG
192 ACAAATCGCATCAAG
*
4226763 TCTTATCTCCCTGAAGTTA-CAGTGGAGCAGAC
1 TCTTATCTCCCT-AAG-TAGTAGTGGAGCAGAC
4226795 TAAGACCACA
Statistics
Matches: 214, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
206 1 0.00
207 29 0.14
210 167 0.78
211 15 0.07
212 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (206 bp):
TCTTATCTCCCTAAGTAGTAGTGGAGCAGACGAAACAAATCTTATCTCCCTAAGCAGTAGTGGAG
CACATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATCT
CCCTGAGAAGCAGTGGAGTAGGTTAAAAATAGTAGATCTTATCTCCCTAAGCAGTAGTAGAACAA
ATCGCATCAAG
Found at i:4226645 original size:167 final size:168
Alignment explanation
Indices: 4226210--4226661 Score: 553
Period size: 167 Copynumber: 2.7 Consensus size: 168
4226200 AAGTCATCTT
* *
4226210 ATCAAGTCTTATCTCGCTAAGCAGTAGTGGAGCAGACAGAAGAAA-TCAATCTTATCTT-CCTAA
1 ATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAGAAACT-AATCTTAT-TTCCCTAA
* * * * *
4226273 GCAGTAGTGAAACAGAATTAAGTCACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAG
64 GCAGTAGTGGAGCA-CAGT-AGACACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAG
* *
4226338 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGC
127 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAAATCGC
* * * * *
4226380 ATCAAATCTTATCTCCCTAAGTAGTAGTGGAGCAGATC---A-CATC-AGGTCTTATCTCCCTAA
1 ATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGA-CAGAAGAAACTA-ATCTTATTTCCCTAA
* * * *
4226440 GCAGTAGTGGAGTGGACAGAAGAAACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAG
64 GCAGTAGTGGA--GCACAGTAGACACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAG
4226505 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAAATCGC
127 ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAAATCGC
4226547 ATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAGAAACTAATCTTATTTCCCTAAGC
1 ATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAGAAACTAATCTTATTTCCCTAAGC
* * * * *
4226612 AGTAGTGGAGCACA-TCG-CATCAAGTCTTATCTCCCTAAGCAGTAGTGGAG
66 AGTAGTGGAGCACAGTAGACACCAA-TCCTATCTCCCTGAGCAGCAGTGGAG
4226662 CAGACAAAAG
Statistics
Matches: 239, Mismatches: 31, Indels: 27
0.80 0.10 0.09
Matches are distributed among these distances:
166 7 0.03
167 163 0.68
168 6 0.03
169 2 0.01
170 59 0.25
171 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (168 bp):
ATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAGAAACTAATCTTATTTCCCTAAGC
AGTAGTGGAGCACAGTAGACACCAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTG
TAGATCTTATCTCCCTAAGCAGTAGTGGAACAAATCGC
Found at i:4226669 original size:127 final size:127
Alignment explanation
Indices: 4226216--4226774 Score: 416
Period size: 127 Copynumber: 4.4 Consensus size: 127
4226206 TCTTATCAAG
* * *
4226216 TCTTATCTCGCTAAGCAGTAGTGGAGCAGA-CAGAAGAAATCAA-TCTTATCTTCCTAAGCAGTA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC----G-CATCAAGTCTTATCTCCCTAAGCAGTA
* * * * * * * * * *
4226279 GTGAAACAGA-ATTAA--GTCACCAA-TCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGAT
61 GTGGAGCAGACA--AATCG-CATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGTAGACAGAAGAA
**
4226340 TGTAGA
123 ACTA-A
* *
4226346 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAATCTTATCTCCCTAAGTAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
* * * * *
4226411 GCAG----ATCACATCAGGTCTTATCTCCCTAAGCAGTAGTGGAGTGGACAGAAGAAACCAA
66 GCAGACAAATCGCATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGTAGACAGAAGAAACTAA
* * * * * * * **
4226469 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG--CA-TCAAG-TCTTATCTCCCTAAGCAGTAG
* *
4226534 T-G-G-A-ACAAATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAGAAACTA
62 TGGAGCAGACAAATCGCATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGTAGACAGAAGAAACTA
4226595 A
127 A
* *
4226596 TCTTATTTCCCTAAGCAGTAGTGGAGCACATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
* * * * * * ** *
4226661 GCAGACAAA-AGAAACCAA-TCCTATCTCCCTGAGAAGCAGTGGAGTAGGTTA-AA-AATAGTAG
66 GCAGACAAATCG-CATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGTA-GACAGAAGAA-ACTA-
4226722 A
127 A
* * *
4226723 TCTTATCTCTCTAAGCAGTAGTAGAGCAGATCGCATCCAGTCTTATCTCCCT
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCT
4226775 GAAGTTACAG
Statistics
Matches: 345, Mismatches: 63, Indels: 45
0.76 0.14 0.10
Matches are distributed among these distances:
122 1 0.00
123 54 0.16
124 37 0.11
125 6 0.02
126 38 0.11
127 179 0.52
130 29 0.08
131 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (127 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
GCAGACAAATCGCATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGTAGACAGAAGAAACTAA
Found at i:4226702 original size:83 final size:83
Alignment explanation
Indices: 4226210--4226704 Score: 324
Period size: 83 Copynumber: 5.9 Consensus size: 83
4226200 AAGTCATCTT
* * * * *
4226210 ATCAAGTCTTATCTCGCTAAGCAGTAGTGGAGCAGACAGAAGAAATCAATCTTATCTTCCTAAGC
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAGC
* * *
4226275 AGTAGTGAAACAGAATTAAGTC
66 AGTAGTGGAGCA-AA-T-CG-C
* * * * * * ** **** *
4226297 ACCAA-TCCTATCTCCCTGAGCAGCAGTGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAG
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCA-ATCCTATCTCCCTAAG
*
4226361 CAGTAGTGGAGCAGATCGC
65 CAGTAGTGGAGCAAATCGC
* * * * * *
4226380 ATCAAATCTTATCTCCCTAAGTAGTAGTGGAGCAGATC-----ACATCAGGTCTTATCTCCCTAA
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAGAAACCA-ATCCTATCTCCCTAA
*
4226440 GCAGTAGTGGAGTGGACAGAA--GAA
64 GCAGTAGTGGA---G-CA-AATCG-C
* * * * * **** **** *
4226464 ACCAA-TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCA-ATCCTATCTCCCTAAG
*
4226528 CAGTAGTGGAACAAATCGC
65 CAGTAGTGGAGCAAATCGC
* * * * *
4226547 ATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAAGAAACTAATCTTATTTCCCTAAGC
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAGC
*
4226612 AGTAGTGGAGCACATCGC
66 AGTAGTGGAGCAAATCGC
* *
4226630 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTGAGA
1 ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAGC
*
4226695 AGCAGTGGAG
66 AGTAGTGGAG
4226705 TAGGTTAAAA
Statistics
Matches: 322, Mismatches: 69, Indels: 38
0.75 0.16 0.09
Matches are distributed among these distances:
80 28 0.09
82 2 0.01
83 136 0.42
84 63 0.20
85 3 0.01
86 32 0.10
87 58 0.18
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (83 bp):
ATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAGAAACCAATCCTATCTCCCTAAGC
AGTAGTGGAGCAAATCGC
Found at i:4230564 original size:21 final size:21
Alignment explanation
Indices: 4230538--4230580 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
4230528 TTAAATATAA
4230538 GACTAAGACCTAAGGAGATTT
1 GACTAAGACCTAAGGAGATTT
* *
4230559 GACTAAGTCCTAGGGAGATTT
1 GACTAAGACCTAAGGAGATTT
4230580 G
1 G
4230581 CTAGCTTCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.26
Consensus pattern (21 bp):
GACTAAGACCTAAGGAGATTT
Found at i:4232494 original size:184 final size:184
Alignment explanation
Indices: 4232173--4232687 Score: 728
Period size: 184 Copynumber: 2.8 Consensus size: 184
4232163 TATATATATT
* * * ** *
4232173 CATATACGAATCCAATTCAGCAA-TGAATATCGATATACCCAACAATTCAACAATGTATAACCAT
1 CATATACGAAT-CAATTCAGCAACT-TATATCCATATACCAAACAATTCGGCAATATATAACCAT
* ** * * * * **
4232237 TCACGAATCAAGTTCGGCAATATATAATTATACACAAATCAAATTCGGCATCCTATATTGATAAA
64 ACACGAATCAAGTTCGATAATGTATAATCAAATACAAATCAAATTCGGCATCCTATATACATAAA
* *
4232302 CAATTCAATATCGACAATACATAACCAAGTACGAA-TTAATTTCAGCAATGTACAAC
129 CAATTCAATATCGACAATACATAACCAAGTAC-AATTTAATTTCAGCAAGGTAAAAC
* *
4232358 CCTGTACGAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATATATAACCATAC
1 CATATACGAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATATATAACCATAC
* * * *
4232423 ATGAATCAAGTTCGATAATGTATAATCAAATACAAATCTAATTTGACATCCTATATACATAAACA
66 ACGAATCAAGTTCGATAATGTATAATCAAATACAAATCAAATTCGGCATCCTATATACATAAACA
* * *
4232488 ATTCAATATCGACAATATATGACCATGTACAATTTAATTTCAGCAAGGTAAAAC
131 ATTCAATATCGACAATACATAACCAAGTACAATTTAATTTCAGCAAGGTAAAAC
*
4232542 CATATACGAATCAATTCAGCAACTTTTATCCATATACCAAACAATTCGGCAATATATAACCATAC
1 CATATACGAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATATATAACCATAC
* *
4232607 ACGAATCAAGTTCAATAATGTATAATCAAATACAAATCCAATTCGGCATCCTATATACATAAACA
66 ACGAATCAAGTTCGATAATGTATAATCAAATACAAATCAAATTCGGCATCCTATATACATAAACA
4232672 ATTCAATATCGACAAT
131 ATTCAATATCGACAAT
4232688 GTTGAAACCA
Statistics
Matches: 294, Mismatches: 34, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
183 2 0.01
184 282 0.96
185 10 0.03
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (184 bp):
CATATACGAATCAATTCAGCAACTTATATCCATATACCAAACAATTCGGCAATATATAACCATAC
ACGAATCAAGTTCGATAATGTATAATCAAATACAAATCAAATTCGGCATCCTATATACATAAACA
ATTCAATATCGACAATACATAACCAAGTACAATTTAATTTCAGCAAGGTAAAAC
Found at i:4232575 original size:30 final size:30
Alignment explanation
Indices: 4232539--4232620 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
4232529 AGCAAGGTAA
*
4232539 AACCATATACGAATCAATTCAGCAACT-TTT
1 AACCATATACGAATCAATTCAGCAA-TATAT
* * * *
4232569 ATCCATATACCAAACAATTCGGCAATATAT
1 AACCATATACGAATCAATTCAGCAATATAT
*
4232599 AACCATACACGAATCAAGTTCA
1 AACCATATACGAATCAA-TTCA
4232621 ATAATGTATA
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
29 1 0.03
30 36 0.90
31 3 0.08
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (30 bp):
AACCATATACGAATCAATTCAGCAATATAT
Found at i:4234588 original size:16 final size:16
Alignment explanation
Indices: 4234563--4234594 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4234553 ATTTTGTTGC
4234563 TAATTCTACTTTTTCA
1 TAATTCTACTTTTTCA
*
4234579 TAATTTTACTTTTTCA
1 TAATTCTACTTTTTCA
4234595 CTTTCAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTCTACTTTTTCA
Found at i:4234971 original size:50 final size:51
Alignment explanation
Indices: 4234860--4234986 Score: 168
Period size: 50 Copynumber: 2.5 Consensus size: 51
4234850 CCGGTTCACA
* * ** *
4234860 TAGTTGCCTACACATAGTACTACACATTTGACCCTCACTATTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATTCGATACACG
* *
4234911 TAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TTTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATTCGATACACG
4234961 TAGTAGCCTGCACATAGTACTACACA
1 TAGTAGCCTGCACATAGTACTACACA
4234987 CGTTACCATC
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
50 35 0.51
51 30 0.44
52 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (51 bp):
TAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATTCGATACACG
Found at i:4237105 original size:25 final size:27
Alignment explanation
Indices: 4237062--4237123 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 27
4237052 AAATAGGAAT
**
4237062 ATAATCAAATATGATAATATCAACAACA
1 ATAAT-AAATATGATAATAAAAACAACA
* *
4237090 ATAATAAATA-G-TAATAAAAATAATA
1 ATAATAAATATGATAATAAAAACAACA
4237115 ATAATAAAT
1 ATAATAAAT
4237124 TAATTAATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 19 0.63
26 1 0.03
27 5 0.17
28 5 0.17
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.27
Consensus pattern (27 bp):
ATAATAAATATGATAATAAAAACAACA
Found at i:4237132 original size:15 final size:13
Alignment explanation
Indices: 4237089--4237123 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
4237079 TATCAACAAC
*
4237089 AATAATAAATAGT
1 AATAATAAATAAT
4237102 AATAA-AAATAAT
1 AATAATAAATAAT
4237114 AATAATAAAT
1 AATAATAAAT
4237124 TAATTAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 11 0.55
13 9 0.45
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
AATAATAAATAAT
Found at i:4246586 original size:186 final size:186
Alignment explanation
Indices: 4246257--4246631 Score: 642
Period size: 186 Copynumber: 2.0 Consensus size: 186
4246247 CGTCTGTGGA
* * *
4246257 TACCTCGTGCACTCATCGTAGAATTCGTAGCTTATCTGTGTTATCAATTTTATGAATCAGTTACA
1 TACCTCATGCACTCATCATAGAATTCGTAGCTTATCCGTGTTATCAATTTTATGAATCAGTTACA
*
4246322 ATTTCGATATCTATTAGTAGACATTTTATGCAAAACAGTATCAGATGTTTAAAGTTTGTTATCAC
66 ATTTCGATATCTATTAGTAGACAATTTATGCAAAACAGTATCAGATGTTTAAAGTTTGTTATCAC
*
4246387 GAATCGCAGTCTTACTACAGTTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
131 GAATCGCAGTCTTACTACAATTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
* *
4246443 TACCTCATGCACTCATCATAGAATTCGTAGCTTATCCGTGTTATCAGTTTTATGAATCAGTTATA
1 TACCTCATGCACTCATCATAGAATTCGTAGCTTATCCGTGTTATCAATTTTATGAATCAGTTACA
* * * *
4246508 GTTTCGATATCTATTAGTAGATAATTTATGCAAAACAGTATCAGATGTTTAGAGTTTGTTATCAT
66 ATTTCGATATCTATTAGTAGACAATTTATGCAAAACAGTATCAGATGTTTAAAGTTTGTTATCAC
*
4246573 GAATCGTAGTCTTACTACAATTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
131 GAATCGCAGTCTTACTACAATTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
4246629 TAC
1 TAC
4246632 AGTGTTCTCA
Statistics
Matches: 177, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
186 177 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (186 bp):
TACCTCATGCACTCATCATAGAATTCGTAGCTTATCCGTGTTATCAATTTTATGAATCAGTTACA
ATTTCGATATCTATTAGTAGACAATTTATGCAAAACAGTATCAGATGTTTAAAGTTTGTTATCAC
GAATCGCAGTCTTACTACAATTTTTAGTTTCTCTACTATTTTCAGTATACACTATC
Found at i:4250447 original size:22 final size:22
Alignment explanation
Indices: 4250421--4250465 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
4250411 ACCAAATTAG
4250421 TTCTTGAACACTA-AATT-TTAAT
1 TTCTT-AAC-CTAGAATTATTAAT
4250443 TTCTTAACCTAGAATTATTAAT
1 TTCTTAACCTAGAATTATTAAT
4250465 T
1 T
4250466 CTATTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.14
21 7 0.33
22 11 0.52
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (22 bp):
TTCTTAACCTAGAATTATTAAT
Found at i:4250467 original size:21 final size:22
Alignment explanation
Indices: 4250416--4250467 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 22
4250406 TTTTAACCAA
*
4250416 ATTAGTTCTTGAACACTAAATT
1 ATTAATTCTTGAACACTAAATT
4250438 -TTAATTTCTT-AAC-CTAGAATT
1 ATTAA-TTCTTGAACACTA-AATT
4250459 ATTAATTCT
1 ATTAATTCT
4250468 ATTTATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
20 3 0.12
21 14 0.54
22 9 0.35
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (22 bp):
ATTAATTCTTGAACACTAAATT
Found at i:4251583 original size:13 final size:14
Alignment explanation
Indices: 4251565--4251601 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
4251555 GTTTGTCAGT
*
4251565 AAAATGTTTTCT-G
1 AAAATGATTTCTGG
4251578 AAAATGATTTCTGG
1 AAAATGATTTCTGG
4251592 AAAATGATTT
1 AAAATGATTT
4251602 ACTTTTCTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (14 bp):
AAAATGATTTCTGG
Found at i:4251610 original size:20 final size:20
Alignment explanation
Indices: 4251585--4251624 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
4251575 CTGAAAATGA
*
4251585 TTTCTGGAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
4251605 TTTCTGAAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
4251625 GAAAATATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:4251621 original size:34 final size:32
Alignment explanation
Indices: 4251571--4251634 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 32
4251561 CAGTAAAATG
4251571 TTTTCTGAAAATGATTT-CTGGAAAATGATTTAC
1 TTTTCTGAAAATGATTTACT-GAAAAT-ATTTAC
4251604 TTTTCTGAAAAATGATTTACTGAAAATATTT
1 TTTTCTG-AAAATGATTTACTGAAAATATTT
4251635 TCTAGTGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 11 0.38
34 16 0.55
35 2 0.07
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (32 bp):
TTTTCTGAAAATGATTTACTGAAAATATTTAC
Found at i:4251700 original size:32 final size:32
Alignment explanation
Indices: 4251615--4251700 Score: 88
Period size: 33 Copynumber: 2.7 Consensus size: 32
4251605 TTTCTGAAAA
*
4251615 ATGATTTACTGAAAATATTTTCTAGTGTTTGG
1 ATGATTTCCTGAAAATATTTTCTAGTGTTTGG
* *
4251647 ATGA-ATCTGTGTAAAATATTTTCT-GTTGTTTGG
1 ATGATTTC-CTG-AAAATATTTTCTAG-TGTTTGG
4251680 CA-GATTTCCTGAAAATATTTT
1 -ATGATTTCCTGAAAATATTTT
4251701 TCGGAAAAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
31 1 0.02
32 17 0.39
33 23 0.52
34 3 0.07
ACGTcount: A:0.28, C:0.08, G:0.17, T:0.47
Consensus pattern (32 bp):
ATGATTTCCTGAAAATATTTTCTAGTGTTTGG
Found at i:4251747 original size:20 final size:20
Alignment explanation
Indices: 4251722--4251760 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
4251712 GTTTTTACCT
4251722 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
4251742 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
4251761 TTTTAAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:4257103 original size:22 final size:23
Alignment explanation
Indices: 4257025--4257176 Score: 123
Period size: 23 Copynumber: 6.7 Consensus size: 23
4257015 TCACCCACCG
* * *
4257025 AACAGAACCAAACATAACCTCCA
1 AACACAACCAAATATACCCTCCA
** * *
4257048 AACACATGC-AATTTACCCTCAA
1 AACACAACCAAATATACCCTCCA
* * *
4257070 AATATAACCAAACATACCCTCC-
1 AACACAACCAAATATACCCTCCA
*
4257092 AACACAACCAAATATAGCCTCCA
1 AACACAACCAAATATACCCTCCA
* * *
4257115 AATACAACCAAATATTCCATCCA
1 AACACAACCAAATATACCCTCCA
* *
4257138 AACACAACCAGATATAGCCTCTC-
1 AACACAACCAAATATACCCTC-CA
4257161 AACAC-ACCAAATATAC
1 AACACAACCAAATATAC
4257177 AACATAATAT
Statistics
Matches: 97, Mismatches: 29, Indels: 7
0.73 0.22 0.05
Matches are distributed among these distances:
22 41 0.42
23 55 0.57
24 1 0.01
ACGTcount: A:0.47, C:0.34, G:0.03, T:0.16
Consensus pattern (23 bp):
AACACAACCAAATATACCCTCCA
Found at i:4257118 original size:45 final size:46
Alignment explanation
Indices: 4257030--4257158 Score: 145
Period size: 45 Copynumber: 2.8 Consensus size: 46
4257020 CACCGAACAG
* ** * * *
4257030 AACCAAACATAACCTCCAAACACATGC-AATTTACCCTCAAAATAT
1 AACCAAACATACCCTCCAAACACAACCAAATATAGCCTCAAAATAC
*
4257075 AACCAAACATACCCTCC-AACACAACCAAATATAGCCTCCAAATAC
1 AACCAAACATACCCTCCAAACACAACCAAATATAGCCTCAAAATAC
* * * *
4257120 AACCAAATATTCCATCCAAACACAACCAGATATAGCCTC
1 AACCAAACATACCCTCCAAACACAACCAAATATAGCCTC
4257159 TCAACACACC
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
44 7 0.10
45 44 0.62
46 20 0.28
ACGTcount: A:0.46, C:0.34, G:0.03, T:0.17
Consensus pattern (46 bp):
AACCAAACATACCCTCCAAACACAACCAAATATAGCCTCAAAATAC
Found at i:4257155 original size:46 final size:45
Alignment explanation
Indices: 4257064--4257176 Score: 131
Period size: 45 Copynumber: 2.5 Consensus size: 45
4257054 TGCAATTTAC
* * * *
4257064 CCTCAAAATATAACCAAACATACCCTCCAACACAACCAAATATAG
1 CCTCCAAATACAACCAAATATACCATCCAACACAACCAAATATAG
* *
4257109 CCTCCAAATACAACCAAATATTCCATCCAAACACAACCAGATATAG
1 CCTCCAAATACAACCAAATATACCATCC-AACACAACCAAATATAG
*
4257155 CCTCTC-AACAC-ACCAAATATAC
1 CCTC-CAAATACAACCAAATATAC
4257177 AACATAATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
45 33 0.57
46 24 0.41
47 1 0.02
ACGTcount: A:0.46, C:0.35, G:0.03, T:0.17
Consensus pattern (45 bp):
CCTCCAAATACAACCAAATATACCATCCAACACAACCAAATATAG
Found at i:4258470 original size:37 final size:37
Alignment explanation
Indices: 4258416--4258489 Score: 112
Period size: 37 Copynumber: 2.0 Consensus size: 37
4258406 AATTGAGGAG
**
4258416 AATGAAAACTACCAAAATGCCCCTATGCTTTGTCATT
1 AATGAAAACTACCAAAATGCCCCTACACTTTGTCATT
* *
4258453 AATGAAAATTACTAAAATGCCCCTACACTTTGTCATT
1 AATGAAAACTACCAAAATGCCCCTACACTTTGTCATT
4258490 TCTGCAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.36, C:0.23, G:0.09, T:0.31
Consensus pattern (37 bp):
AATGAAAACTACCAAAATGCCCCTACACTTTGTCATT
Found at i:4264946 original size:23 final size:22
Alignment explanation
Indices: 4264916--4264959 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
4264906 GAAAGGCAAT
*
4264916 TTGTTGCATTTTTACTGGTAGC
1 TTGTTGCACTTTTACTGGTAGC
*
4264938 TTGTGTGCACTTTTATTGGTAG
1 TTGT-TGCACTTTTACTGGTAG
4264960 AATTTTTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.14, C:0.11, G:0.25, T:0.50
Consensus pattern (22 bp):
TTGTTGCACTTTTACTGGTAGC
Found at i:4270750 original size:27 final size:27
Alignment explanation
Indices: 4270707--4270765 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
4270697 GTAATGAGCC
4270707 TAAAATGACCGAAATACCCCT-GAAGGG
1 TAAAATGACC-AAATACCCCTCGAAGGG
* *
4270734 TAAAATGACCAACATA-CTCTCAAAGGG
1 TAAAATGACCAA-ATACCCCTCGAAGGG
4270761 TAAAA
1 TAAAA
4270766 CACCCTCAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 5 0.18
27 23 0.82
ACGTcount: A:0.46, C:0.20, G:0.17, T:0.17
Consensus pattern (27 bp):
TAAAATGACCAAATACCCCTCGAAGGG
Found at i:4270791 original size:27 final size:27
Alignment explanation
Indices: 4270761--4270985 Score: 276
Period size: 27 Copynumber: 8.4 Consensus size: 27
4270751 TCTCAAAGGG
* * *
4270761 TAAAACACCCTCAAAGGCTAAAATGAC
1 TAAAATACCCTCGAAGGGTAAAATGAC
4270788 TAAAATACCC-CGAAGGGTAAAATGAC
1 TAAAATACCCTCGAAGGGTAAAATGAC
* *
4270814 TGAAATACCCTTGAAGGGTAAAATGA-
1 TAAAATACCCTCGAAGGGTAAAATGAC
* * *
4270840 TCGAAATACCCCCAAAGGGTAAAATGAC
1 T-AAAATACCCTCGAAGGGTAAAATGAC
4270868 TAAAATACCCTCGAAGGGTAAAATGAC
1 TAAAATACCCTCGAAGGGTAAAATGAC
* ** *
4270895 TGAAATACCCTAAAATGGTAAAATGA-
1 TAAAATACCCTCGAAGGGTAAAATGAC
*
4270921 TCGAAATACCCTCGAAGGGTAAAATGAC
1 T-AAAATACCCTCGAAGGGTAAAATGAC
**
4270949 CGAAATACCCTCGAAGGGTAAAATGAC
1 TAAAATACCCTCGAAGGGTAAAATGAC
4270976 TAAAATACCC
1 TAAAATACCC
4270986 GAAGTATAAA
Statistics
Matches: 172, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
26 25 0.15
27 146 0.85
28 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (27 bp):
TAAAATACCCTCGAAGGGTAAAATGAC
Found at i:4270915 original size:81 final size:81
Alignment explanation
Indices: 4270767--4270985 Score: 350
Period size: 81 Copynumber: 2.7 Consensus size: 81
4270757 AGGGTAAAAC
* **
4270767 ACCCTCAAAGGCTAAAATGACTAAAATACCC-CGAAGGGTAAAATGACTGAAATACCCTTGAAGG
1 ACCCTCAAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTAAAAGG
4270831 GTAAAATGATCGAAAT
66 GTAAAATGATCGAAAT
* *
4270847 ACCCCCAAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTAAAATG
1 ACCCTCAAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTAAAAGG
4270912 GTAAAATGATCGAAAT
66 GTAAAATGATCGAAAT
* ** *
4270928 ACCCTCGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCC
1 ACCCTCAAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCC
4270986 GAAGTATAAA
Statistics
Matches: 128, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
80 29 0.23
81 99 0.77
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (81 bp):
ACCCTCAAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTAAAAGG
GTAAAATGATCGAAAT
Found at i:4271370 original size:30 final size:31
Alignment explanation
Indices: 4271331--4271389 Score: 111
Period size: 30 Copynumber: 1.9 Consensus size: 31
4271321 ACTACATTGT
4271331 ACTGATTACTGTATTGGGCTAAGGCCCACTG
1 ACTGATTACTGTATTGGGCTAAGGCCCACTG
4271362 ACTG-TTACTGTATTGGGCTAAGGCCCAC
1 ACTGATTACTGTATTGGGCTAAGGCCCAC
4271390 ACTGTAATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 24 0.86
31 4 0.14
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (31 bp):
ACTGATTACTGTATTGGGCTAAGGCCCACTG
Found at i:4284369 original size:12 final size:12
Alignment explanation
Indices: 4284352--4284376 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4284342 CACATTGCTA
4284352 TTTTCTTTTCTC
1 TTTTCTTTTCTC
4284364 TTTTCTTTTCTC
1 TTTTCTTTTCTC
4284376 T
1 T
4284377 CTGCTTGCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTTTTCTC
Found at i:4284517 original size:13 final size:13
Alignment explanation
Indices: 4284499--4284523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4284489 TAAATATTCT
4284499 CCTCTTCTCTTCC
1 CCTCTTCTCTTCC
4284512 CCTCTTCTCTTC
1 CCTCTTCTCTTC
4284524 TTTGCTAGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (13 bp):
CCTCTTCTCTTCC
Found at i:4285309 original size:27 final size:27
Alignment explanation
Indices: 4285306--4285568 Score: 318
Period size: 27 Copynumber: 9.8 Consensus size: 27
4285296 TCGAAGGGTG
* *
4285306 AAATACCCTCAAAGGCTAAAATGACTA
1 AAATACCCTCGAAGGGTAAAATGACTA
* * *
4285333 AAATACCCCCAAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGACTA
* *
4285360 AAATACCCTTGAAGGGTAAAATGA-TCG
1 AAATACCCTCGAAGGGTAAAATGACT-A
4285387 AAATACCCTCGAAGGGTAAAATGACTA
1 AAATACCCTCGAAGGGTAAAATGACTA
4285414 AAATACCCTCGAAGGGTAAAATGACTA
1 AAATACCCTCGAAGGGTAAAATGACTA
*
4285441 AAATACCCTCGAAGGGTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGACTA
* * * **
4285468 AAATACCC-CAAAATGGTAAAATAACCG
1 AAATACCCTC-GAAGGGTAAAATGACTA
**
4285495 AAATACCCTCGAAGGGTAAAATGACCG
1 AAATACCCTCGAAGGGTAAAATGACTA
* * *
4285522 AAATACCCTCAAAGGCTAAAATGACTG
1 AAATACCCTCGAAGGGTAAAATGACTA
4285549 AAATA-CC-CGAAGGGTAAAAT
1 AAATACCCTCGAAGGGTAAAAT
4285569 AACTGTTGTA
Statistics
Matches: 211, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
25 11 0.05
26 4 0.02
27 194 0.92
28 2 0.01
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.17
Consensus pattern (27 bp):
AAATACCCTCGAAGGGTAAAATGACTA
Found at i:4285348 original size:45 final size:44
Alignment explanation
Indices: 4285261--4285354 Score: 107
Period size: 45 Copynumber: 2.1 Consensus size: 44
4285251 TAAAATGATC
* * * * * *
4285261 GAAATACCCCGAAGGGTAAAATGACCAACATACTCTCGAAGGGT
1 GAAATACCCCAAAGGCTAAAATGACCAAAATACCCCCAAAGGGT
*
4285305 GAAATACCCTCAAAGGCTAAAATGACTAAAATACCCCCAAAGGGT
1 GAAATACCC-CAAAGGCTAAAATGACCAAAATACCCCCAAAGGGT
*
4285350 AAAAT
1 GAAAT
4285355 GACTGAAATA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 9 0.22
45 32 0.78
ACGTcount: A:0.44, C:0.22, G:0.18, T:0.16
Consensus pattern (44 bp):
GAAATACCCCAAAGGCTAAAATGACCAAAATACCCCCAAAGGGT
Found at i:4285367 original size:54 final size:54
Alignment explanation
Indices: 4285304--4285573 Score: 352
Period size: 54 Copynumber: 5.0 Consensus size: 54
4285294 TCTCGAAGGG
* * *
4285304 TGAAATACCCTCAAAGGCTAAAATGACTAAAATACCCCCAAAGGGTAAAATGAC
1 TGAAATACCCTCAAAGGCTAAAATGACTGAAATACCCTCGAAGGGTAAAATGAC
** *
4285358 TGAAATACCCTTGAAGGGTAAAATGA-TCGAAATACCCTCGAAGGGTAAAATGAC
1 TGAAATACCCTCAAAGGCTAAAATGACT-GAAATACCCTCGAAGGGTAAAATGAC
* * * *
4285412 TAAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGAC
1 TGAAATACCCTCAAAGGCTAAAATGACTGAAATACCCTCGAAGGGTAAAATGAC
* *
4285466 TGAAATACCC-CAAAATGG-TAAAATAACCGAAATACCCTCGAAGGGTAAAATGAC
1 TGAAATACCCTC-AAA-GGCTAAAATGACTGAAATACCCTCGAAGGGTAAAATGAC
* *
4285520 CGAAATACCCTCAAAGGCTAAAATGACTGAAATA-CC-CGAAGGGTAAAATAAC
1 TGAAATACCCTCAAAGGCTAAAATGACTGAAATACCCTCGAAGGGTAAAATGAC
4285572 TG
1 TG
4285574 TTGTACCCCT
Statistics
Matches: 191, Mismatches: 19, Indels: 14
0.85 0.08 0.06
Matches are distributed among these distances:
52 16 0.08
53 6 0.03
54 165 0.86
55 4 0.02
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (54 bp):
TGAAATACCCTCAAAGGCTAAAATGACTGAAATACCCTCGAAGGGTAAAATGAC
Found at i:4285413 original size:81 final size:80
Alignment explanation
Indices: 4285304--4285568 Score: 354
Period size: 81 Copynumber: 3.3 Consensus size: 80
4285294 TCTCGAAGGG
* * *
4285304 TGAAATACCCTCAAAGGCTAAAATGACTAAAATACCCCCAAAGGGTAAAATGACTGAAATACCCT
1 TGAAATACCC-CAAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCT
*
4285369 TGAAGGGTAAAATGA-
65 CGAAGGGTAAAATGAC
* *
4285384 TCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTAAAATACCC
1 T-GAAATACCC-CAAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCC
4285449 TCGAAGGGTAAAATGAC
64 TCGAAGGGTAAAATGAC
* * ** *
4285466 TGAAATACCCCAAAATGGTAAAATAACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCT
1 TGAAATACCCC-AAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCT
* *
4285531 CAAAGGCTAAAATGAC
65 CGAAGGGTAAAATGAC
*
4285547 TGAAATA-CCCGAAGGGTAAAAT
1 TGAAATACCCCAAAGGGTAAAAT
4285569 AACTGTTGTA
Statistics
Matches: 165, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
79 10 0.06
80 5 0.03
81 149 0.90
82 1 0.01
ACGTcount: A:0.45, C:0.20, G:0.18, T:0.18
Consensus pattern (80 bp):
TGAAATACCCCAAAGGGTAAAATGACTAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTC
GAAGGGTAAAATGAC
Found at i:4298250 original size:28 final size:28
Alignment explanation
Indices: 4298218--4298274 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
4298208 GTGCTTAATC
* *
4298218 ACATAAGTTAACAATATAATCACATGAT
1 ACATAACTTAACAATATAACCACATGAT
*
4298246 ACATAACTTAACAATATCACCACATGAT
1 ACATAACTTAACAATATAACCACATGAT
4298274 A
1 A
4298275 AGATAGATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.49, C:0.19, G:0.05, T:0.26
Consensus pattern (28 bp):
ACATAACTTAACAATATAACCACATGAT
Found at i:4298455 original size:29 final size:29
Alignment explanation
Indices: 4298413--4298556 Score: 146
Period size: 29 Copynumber: 5.0 Consensus size: 29
4298403 TGCTACAAGG
*
4298413 TGGTCAAAACCATCCCTTTTCATATTCGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
** *
4298442 TGGTCGTCACCATCCCTTTTCATATTTGA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
** *
4298471 TGGTTAAAACCATCCATTTTCATAGTT-GA
1 TGGTCGAAACCATCCCTTTTCATA-TTCGA
** * *
4298500 TGGTCGTCACCATCCCTTTTCATAGTCAA
1 TGGTCGAAACCATCCCTTTTCATATTCGA
* * *
4298529 TAGTCGAAACTATCCTTTTTCATATTCG
1 TGGTCGAAACCATCCCTTTTCATATTCG
4298557 TTGGGCATCG
Statistics
Matches: 90, Mismatches: 23, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
28 1 0.01
29 87 0.97
30 2 0.02
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.38
Consensus pattern (29 bp):
TGGTCGAAACCATCCCTTTTCATATTCGA
Found at i:4298491 original size:58 final size:58
Alignment explanation
Indices: 4298413--4298523 Score: 188
Period size: 58 Copynumber: 1.9 Consensus size: 58
4298403 TGCTACAAGG
*
4298413 TGGTCAAAACCATCCCTTTTCATA-TTCGATGGTCGTCACCATCCCTTTTCATATTTGA
1 TGGTCAAAACCATCCATTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCATATTTGA
*
4298471 TGGTTAAAACCATCCATTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATA
1 TGGTCAAAACCATCCATTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATA
4298524 GTCAATAGTC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
58 48 0.96
59 2 0.04
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (58 bp):
TGGTCAAAACCATCCATTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATATTTGA
Found at i:4298549 original size:58 final size:58
Alignment explanation
Indices: 4298415--4298556 Score: 187
Period size: 58 Copynumber: 2.4 Consensus size: 58
4298405 CTACAAGGTG
* * ** *
4298415 GTCAAAACCATCCCTTTTCATATTCGATGGTCGTCACCATCCCTTTTCATATTTGATG
1 GTCAAAACCATCCATTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTCAATA
*
4298473 GTTAAAACCATCCATTTTCATAGTT-GATGGTCGTCACCATCCCTTTTCATAGTCAATA
1 GTCAAAACCATCCATTTTCATA-TTCGATGGTCGTCACCATCCCTTTTCATAGTCAATA
* * *
4298531 GTCGAAACTATCCTTTTTCATATTCG
1 GTCAAAACCATCCATTTTCATATTCG
4298557 TTGGGCATCG
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
57 2 0.03
58 68 0.94
59 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.38
Consensus pattern (58 bp):
GTCAAAACCATCCATTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAGTCAATA
Found at i:4305762 original size:29 final size:28
Alignment explanation
Indices: 4305728--4305812 Score: 116
Period size: 29 Copynumber: 2.9 Consensus size: 28
4305718 GTGTGCTAAA
4305728 CGATGGTTGAAACCATCCTTTGTCATATT
1 CGATGGTTGAAACCATCCTTT-TCATATT
**
4305757 CGATGGTTGTCACCATCCCTTTTCATATT
1 CGATGGTTGAAACCAT-CCTTTTCATATT
*
4305786 CGATGGTCGAAACCATCCATTTTCATA
1 CGATGGTTGAAACCATCC-TTTTCATA
4305813 GTTGACACCA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
28 2 0.04
29 42 0.86
30 5 0.10
ACGTcount: A:0.24, C:0.25, G:0.15, T:0.36
Consensus pattern (28 bp):
CGATGGTTGAAACCATCCTTTTCATATT
Found at i:4308467 original size:30 final size:30
Alignment explanation
Indices: 4308433--4308496 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
4308423 CCGTGTGTCT
* *
4308433 AGGCTATGTGCAGCACACAACCATGTCACC
1 AGGCTATGTACACCACACAACCATGTCACC
*
4308463 AGGCTATGTACACCACACAACCATGTCGCC
1 AGGCTATGTACACCACACAACCATGTCACC
4308493 AGGC
1 AGGC
4308497 CGTGTGAATC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.34, G:0.20, T:0.16
Consensus pattern (30 bp):
AGGCTATGTACACCACACAACCATGTCACC
Found at i:4309599 original size:18 final size:18
Alignment explanation
Indices: 4309576--4309610 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4309566 TGAACATTTT
*
4309576 ATAAGATATTAGATTTAC
1 ATAAGACATTAGATTTAC
4309594 ATAAGACATTAGATTTA
1 ATAAGACATTAGATTTA
4309611 TACTAGGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (18 bp):
ATAAGACATTAGATTTAC
Found at i:4311025 original size:143 final size:143
Alignment explanation
Indices: 4310766--4311034 Score: 477
Period size: 143 Copynumber: 1.9 Consensus size: 143
4310756 TTCCAGAATT
* *
4310766 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTATATTATGGGGTCATCTTCAAACATT
1 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTAGATTATGGGGTCATCTTCAAAAATT
* *
4310831 TTCTTGCAAAGGTTTCTATCTTGGAGGGGAAATTAGAGCCACTTGAAGGGGGTTGTGGATTTTTT
66 TTCTTGCAAAGGTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATTTTTT
4310896 GTGTTTCGTTCCA
131 GTGTTTCGTTCCA
4310909 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTAGATTATGGGGTCATCTTCAAAAATT
1 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTAGATTATGGGGTCATCTTCAAAAATT
*
4310974 TTCTTGCCAAA-GTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAGGGGGGTTGTGGATT
66 TTCTTG-CAAAGGTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATT
4311035 CTTGACGTTT
Statistics
Matches: 120, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
143 116 0.97
144 4 0.03
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (143 bp):
GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTAGATTATGGGGTCATCTTCAAAAATT
TTCTTGCAAAGGTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATTTTTT
GTGTTTCGTTCCA
Found at i:4313105 original size:20 final size:20
Alignment explanation
Indices: 4313080--4313132 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
4313070 TTTTATTGGT
*
4313080 TTATTTCCTCTTGCAACAAA
1 TTATTTCATCTTGCAACAAA
*
4313100 TTATTTTATCTTGCAACAAA
1 TTATTTCATCTTGCAACAAA
*
4313120 AT-TTTCTATCTTG
1 TTATTTC-ATCTTG
4313133 ACCTTTAACG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (20 bp):
TTATTTCATCTTGCAACAAA
Found at i:4314514 original size:143 final size:143
Alignment explanation
Indices: 4314255--4314523 Score: 459
Period size: 143 Copynumber: 1.9 Consensus size: 143
4314245 TTCCAGAATT
* *
4314255 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTATATTATGGGGTCATCTTCAAACATT
1 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTAGATTATGGGGTCATCTTCAAAAATT
* *
4314320 TTCTTGCAAAGGTTTCTATCTTGGAGGGGAAATTAGAGCCACTTGAAGGGGGTTGTGGATTTTTT
66 TTCTTGCAAAGGTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATTTTTT
4314385 GTGTTTCGTTCCA
131 GTGTTTCGTTCCA
* *
4314398 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAATAATCTTTTAGATTATTGGGTCATCTTCAAAAATT
1 GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTAGATTATGGGGTCATCTTCAAAAATT
*
4314463 TTCTTGCCAAA-GTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAGGGGGGTTGTGGATT
66 TTCTTG-CAAAGGTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATT
4314524 CATGACGTTT
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
143 114 0.97
144 4 0.03
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (143 bp):
GTTCTTGAGTTTCTTTTAGAAGAGTTTTAACAATCTTTTAGATTATGGGGTCATCTTCAAAAATT
TTCTTGCAAAGGTTTCTATCTTGGAGGGGAAATTAAAACCACTTGAAGGGGGTTGTGGATTTTTT
GTGTTTCGTTCCA
Found at i:4316342 original size:17 final size:17
Alignment explanation
Indices: 4316320--4316352 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4316310 TAGTACACAA
4316320 GGCAATTAAGATTGAGT
1 GGCAATTAAGATTGAGT
*
4316337 GGCAATTGAGATTGAG
1 GGCAATTAAGATTGAG
4316353 CAGCAATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.06, G:0.33, T:0.27
Consensus pattern (17 bp):
GGCAATTAAGATTGAGT
Found at i:4316358 original size:17 final size:17
Alignment explanation
Indices: 4316321--4316360 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
4316311 AGTACACAAG
**
4316321 GCAATTAAGATTGAGTG
1 GCAATTAAGATTGAGCA
*
4316338 GCAATTGAGATTGAGCA
1 GCAATTAAGATTGAGCA
4316355 GCAATT
1 GCAATT
4316361 TCAACATCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (17 bp):
GCAATTAAGATTGAGCA
Found at i:4317282 original size:20 final size:20
Alignment explanation
Indices: 4317257--4317309 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
4317247 TTTTATAGGT
*
4317257 TTATTTCCTCTTGCAACAAA
1 TTATTTCATCTTGCAACAAA
*
4317277 TTATTTTATCTTGCAACAAA
1 TTATTTCATCTTGCAACAAA
*
4317297 AT-TTTCTATCTTG
1 TTATTTC-ATCTTG
4317310 ACCTTTAACG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (20 bp):
TTATTTCATCTTGCAACAAA
Found at i:4318806 original size:10 final size:10
Alignment explanation
Indices: 4318775--4318816 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
4318765 CAAATTCGCG
4318775 ACTTGAACAA
1 ACTTGAACAA
* *
4318785 ACTT-TAC-G
1 ACTTGAACAA
4318793 ACTTGAACAA
1 ACTTGAACAA
4318803 ACTTGAACAA
1 ACTTGAACAA
4318813 ACTT
1 ACTT
4318817 TACAATCGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
8 4 0.15
9 4 0.15
10 18 0.69
ACGTcount: A:0.43, C:0.21, G:0.10, T:0.26
Consensus pattern (10 bp):
ACTTGAACAA
Found at i:4325934 original size:132 final size:132
Alignment explanation
Indices: 4325741--4326537 Score: 1245
Period size: 132 Copynumber: 6.0 Consensus size: 132
4325731 ACTGTTGATT
* * *
4325741 TGCTCTACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACCTACTCCACTACTGCTTAGGAT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* * * * * *
4325806 GATAGGACTAACGGCTTAAATTTGCTTCTCCACTGTATTGGGAAGATAATATTTACTATATTCGA
66 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
4325871 TC
131 TC
* *
4325873 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCGACCTATTCCACTACTGCTTAGGGT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* * *
4325938 GATAGGACTAATGGCTTAAATTTGCTTCTCCACTGTATTAGGAAGATAAGATTCACCGTCTTCGA
66 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
4326003 TC
131 TC
* * *
4326005 TG-TCAACTACTGCTTAGGGTGACAGAATCTGCAATCTTCGACCTATTCCACTACTGCTTAGGGT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
* * *
4326069 GATATGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGAGAAGATATGATTCACCATCTTCGA
66 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
4326134 TC
131 TC
* * * * * * *
4326136 TACTCAACTACTGCTTAGGGTGACAGAATCTGCACTCTTCAACCGACTCCATTACTACTTACGGT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
*
4326201 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAGATAAGATTCACCATCTTCGA
66 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
4326266 TC
131 TC
* * * * *
4326268 TGCTCTACTACTGCTTAGGGTGACAGAATCTGTAATCTTTAACCTAATCCACTACGGCTTAGGGT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
*
4326333 GATAGGACTAATGGCCTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
66 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
4326398 TC
131 TC
* *
4326400 TACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTTAACCTACTCCACTACTGCTTAGGGT
1 TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
*
4326465 GATAGGACTAATGGCTTAAATCTGCTTCTCCAATGTATTGGGAAGATAAGATTCACCATCTTCGA
66 GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
4326530 TC
131 TC
*
4326532 TACTCC
1 TGCTCC
4326538 GCTGCCAAAT
Statistics
Matches: 613, Mismatches: 51, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
131 123 0.20
132 490 0.80
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (132 bp):
TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGT
GATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGATAAGATTCACCATCTTCGA
TC
Found at i:4326574 original size:46 final size:46
Alignment explanation
Indices: 4326522--4326847 Score: 467
Period size: 46 Copynumber: 7.1 Consensus size: 46
4326512 AAGATTCACC
* *
4326522 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACATGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
4326568 ATCTTCGATC-CCTCCACTGCCAATTATAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * * *
4326613 ATCCTCGATCTCCTCCGCTGCCAAATACAGGAAGATATGATTTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
4326659 ATCTTTGATCTCCTCCGCTGGCAAATACAGG-AGATAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
*
4326704 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAATATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
4326750 ATCTTCGATCCCCTCCGCTGCCAATTACAGGAAGAAAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
* * *
4326796 ATCTTTGATCCCCTCCGCTGCCAATTACAGGAAGACAAGATCTGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
4326842 ATCTTC
1 ATCTTC
4326848 ATTGATCTGT
Statistics
Matches: 250, Mismatches: 28, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
45 80 0.32
46 170 0.68
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (46 bp):
ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCT
Found at i:4326622 original size:91 final size:91
Alignment explanation
Indices: 4326522--4326847 Score: 476
Period size: 91 Copynumber: 3.6 Consensus size: 91
4326512 AAGATTCACC
* *
4326522 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACATGATCTGCTATCTTCGATCCCTCCACTG
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACATGATCTGCTATCTTCGATCCCTCCGCTG
* *
4326587 CCAATTATAGGAAGACAAGATCTGCT
66 CCAATTACAGGAAGAAAAGATCTGCT
* * * *
4326613 ATCCTCGATCTCCTCCGCTGCCAAATACAGGAAGATATGATTTGCTATCTTTGATCTCCTCCGCT
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACATGATCTGCTATCTTCGATC-CCTCCGCT
* * *
4326678 GGCAAATACAGG-AGATAAGATCTGCT
65 GCCAATTACAGGAAGAAAAGATCTGCT
4326704 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACAAT-ATCTGCTATCTTCGATCCCCTCCGC
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGAC-ATGATCTGCTATCTTCGAT-CCCTCCGC
4326768 TGCCAATTACAGGAAGAAAAGATCTGCT
64 TGCCAATTACAGGAAGAAAAGATCTGCT
* * * *
4326796 ATCTTTGATCCCCTCCGCTGCCAATTACAGGAAGACAAGATCTGCTATCTTC
1 ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACATGATCTGCTATCTTC
4326848 ATTGATCTGT
Statistics
Matches: 209, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
91 131 0.63
92 78 0.37
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (91 bp):
ATCTTCGATCTCCTCCGCTGCCAAATACAGGAAGACATGATCTGCTATCTTCGATCCCTCCGCTG
CCAATTACAGGAAGAAAAGATCTGCT
Found at i:4326676 original size:137 final size:138
Alignment explanation
Indices: 4326522--4326847 Score: 485
Period size: 137 Copynumber: 2.4 Consensus size: 138
4326512 AAGATTCACC
* * *
4326522 ATCTTCGATCTACTCCGCTGCCAAATACAGGAAGACATGATCTGCTATCTTCGATC-CCTCCACT
1 ATCTTTGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCACT
* * * * *
4326586 GCCAATTATAGGAAGACAAGATCTGCTATCCTCGATCTCCTCCGCTGCCAAATACAGGAAGATAT
66 GCCAAATACAGGAAGACAAGATCTGCTATCCTCGATCCCCTCCGCTGCCAAATACAGGAAGAAAA
*
4326651 GATTTGCT
131 GATCTGCT
* * *
4326659 ATCTTTGATCTCCTCCGCTGGCAAATACAGG-AGATAAGATCTGCTATCTTCGATCTCCTCCGCT
1 ATCTTTGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCACT
* * *
4326723 GCCAAATACAGGAAGACAATATCTGCTATCTTCGATCCCCTCCGCTGCCAATTACAGGAAGAAAA
66 GCCAAATACAGGAAGACAAGATCTGCTATCCTCGATCCCCTCCGCTGCCAAATACAGGAAGAAAA
4326788 GATCTGCT
131 GATCTGCT
* *
4326796 ATCTTTGATCCCCTCCGCTGCCAATTACAGGAAGACAAGATCTGCTATCTTC
1 ATCTTTGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTC
4326848 ATTGATCTGT
Statistics
Matches: 168, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
136 22 0.13
137 127 0.76
138 19 0.11
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (138 bp):
ATCTTTGATCTCCTCCGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCACT
GCCAAATACAGGAAGACAAGATCTGCTATCCTCGATCCCCTCCGCTGCCAAATACAGGAAGAAAA
GATCTGCT
Found at i:4328828 original size:6 final size:6
Alignment explanation
Indices: 4328794--4328821 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
4328784 TGGCCTCTCC
4328794 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
4328822 TTGTTTTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTCT
Found at i:4328965 original size:15 final size:15
Alignment explanation
Indices: 4328933--4328966 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
4328923 CTTCTTTTTG
* *
4328933 TTTTTTTTATTTTGA
1 TTTTTTTCATTTTCA
4328948 TTTTTTTCATTTTCA
1 TTTTTTTCATTTTCA
4328963 TTTT
1 TTTT
4328967 GACTTTGATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTTTTCATTTTCA
Found at i:4332230 original size:16 final size:16
Alignment explanation
Indices: 4332209--4332247 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
4332199 AATAATAGAA
4332209 ATATATAAAAACATGT
1 ATATATAAAAACATGT
* **
4332225 ATATATGAAAGTATGT
1 ATATATAAAAACATGT
4332241 ATATATA
1 ATATATA
4332248 TACAAATTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.51, C:0.03, G:0.10, T:0.36
Consensus pattern (16 bp):
ATATATAAAAACATGT
Found at i:4336401 original size:20 final size:21
Alignment explanation
Indices: 4336376--4336425 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
4336366 TGAATTTGGC
4336376 ATCGATACCAATT-TAAAAAT
1 ATCGATACCAATTATAAAAAT
**
4336396 ATCGATA-CTTTTATAAAAAT
1 ATCGATACCAATTATAAAAAT
4336416 ATCGATACCA
1 ATCGATACCA
4336426 CTGGGGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 21 0.84
21 1 0.04
ACGTcount: A:0.46, C:0.16, G:0.06, T:0.32
Consensus pattern (21 bp):
ATCGATACCAATTATAAAAAT
Found at i:4341996 original size:27 final size:27
Alignment explanation
Indices: 4341958--4342224 Score: 353
Period size: 27 Copynumber: 9.9 Consensus size: 27
4341948 CCATAATAGT
*
4341958 TAATTTTACCCATTG-GGTGTATTTCGA
1 TAATTTTACCCATCGAGG-GTATTTCGA
4341985 TAATTTTACCCATCGAGGGCT-TTTCGA
1 TAATTTTACCCATCGAGGG-TATTTCGA
*
4342012 TAATTTTACCCATCGAGAGCT-TTTCGA
1 TAATTTTACCCATCGAG-GGTATTTCGA
4342039 TAATTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
* * * *
4342066 TAATATTACCCATCGGGGGTATTTTGG
1 TAATTTTACCCATCGAGGGTATTTCGA
* * *
4342093 TAATTTTACCCATCGAAGGTATTTTGG
1 TAATTTTACCCATCGAGGGTATTTCGA
4342120 TAATTTTACCCATCGAGGGTATTTCGA
1 TAATTTTACCCATCGAGGGTATTTCGA
* *
4342147 TAATTTTACCCATCGAAGGTATTTAGA
1 TAATTTTACCCATCGAGGGTATTTCGA
*
4342174 TAATTTTACCCATCAAGGGTATTTC-A
1 TAATTTTACCCATCGAGGGTATTTCGA
*
4342200 GTAATTTTACCCATCGAGGATATTT
1 -TAATTTTACCCATCGAGGGTATTT
4342225 TGGTATAGTT
Statistics
Matches: 215, Mismatches: 20, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.01
27 208 0.97
28 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
TAATTTTACCCATCGAGGGTATTTCGA
Found at i:4344590 original size:35 final size:35
Alignment explanation
Indices: 4344539--4344816 Score: 216
Period size: 35 Copynumber: 7.8 Consensus size: 35
4344529 AAAAAAATTA
* **
4344539 CCTTGGACGTGTCTATCCCAATATTTTTAAGGTTG
1 CCTTAGACGTGTCTATCCCAACCTTTTTAAGGTTG
* * *
4344574 GCTTAGACGTGTCTATCCCAACCTTTTTAACGTTT
1 CCTTAGACGTGTCTATCCCAACCTTTTTAAGGTTG
* * * *
4344609 CCTTAGATGTATTAATCCCTATCCCAACCTTTTTAACGTTT
1 CCTTAGACG---T-GT--CTATCCCAACCTTTTTAAGGTTG
* * *
4344650 CCTTAGACGTATCTATCCCTACATTTTTAAGGTTG
1 CCTTAGACGTGTCTATCCCAACCTTTTTAAGGTTG
* * * * ** *
4344685 GCTCTA-ACGAGTCCATCCTAACCTTTTTAAAATTT
1 CCT-TAGACGTGTCTATCCCAACCTTTTTAAGGTTG
* *
4344720 CCTTAGATGGGTCTATCCCAACCTTTTTAAGGTTG
1 CCTTAGACGTGTCTATCCCAACCTTTTTAAGGTTG
* * * * *
4344755 CCTTACACGGGTTTATACCAACATTTTTAAGGTTG
1 CCTTAGACGTGTCTATCCCAACCTTTTTAAGGTTG
* * *
4344790 CCTTAGACGGGTCCATCTCAACCTTTT
1 CCTTAGACGTGTCTATCCCAACCTTTT
4344817 AAAGTTTTCA
Statistics
Matches: 192, Mismatches: 43, Indels: 16
0.76 0.17 0.06
Matches are distributed among these distances:
34 2 0.01
35 152 0.79
36 2 0.01
37 2 0.01
38 2 0.01
39 1 0.01
41 31 0.16
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.38
Consensus pattern (35 bp):
CCTTAGACGTGTCTATCCCAACCTTTTTAAGGTTG
Found at i:4344643 original size:41 final size:41
Alignment explanation
Indices: 4344586--4344670 Score: 145
Period size: 41 Copynumber: 2.1 Consensus size: 41
4344576 TTAGACGTGT
*
4344586 CTATCCCAACCTTTTTAACGTTTCCTTAGATGTAT-TAATCC
1 CTATCCCAACCTTTTTAACGTTTCCTTAGACGTATCT-ATCC
4344627 CTATCCCAACCTTTTTAACGTTTCCTTAGACGTATCTATCC
1 CTATCCCAACCTTTTTAACGTTTCCTTAGACGTATCTATCC
4344668 CTA
1 CTA
4344671 CATTTTTAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
41 41 0.98
42 1 0.02
ACGTcount: A:0.24, C:0.29, G:0.07, T:0.40
Consensus pattern (41 bp):
CTATCCCAACCTTTTTAACGTTTCCTTAGACGTATCTATCC
Found at i:4344738 original size:111 final size:111
Alignment explanation
Indices: 4344539--4344816 Score: 309
Period size: 105 Copynumber: 2.6 Consensus size: 111
4344529 AAAAAAATTA
* * * * *
4344539 CCTTGGACGTGTCTATCCCAATATTTTTAAGGTTGGCTTAGACGTGTCTATCCCAACCTTTTTAA
1 CCTTAGACGTATCTATCCCAACATTTTTAAGGTTGGCTTAGACGAGTCCATCCCAACCTTTTTAA
** *
4344604 CGTTTCCTTAGATGTATTAATCCCTATCCCAACCTTTTTAACGTTT
66 AATTTCCTTAGATGGATTAATCCCTATCCCAACCTTTTTAACGTTT
* *
4344650 CCTTAGACGTATCTATCCCTACATTTTTAAGGTTGGCTCTA-ACGAGTCCATCCTAACCTTTTTA
1 CCTTAGACGTATCTATCCCAACATTTTTAAGGTTGGCT-TAGACGAGTCCATCCCAACCTTTTTA
* * *
4344714 AAATTTCCTTAGATGG----GT--CTATCCCAACCTTTTTAAGGTTG
65 AAATTTCCTTAGATGGATTAATCCCTATCCCAACCTTTTTAACGTTT
* ** * * * * *
4344755 CCTTACACGGGTTTATACCAACATTTTTAAGGTTGCCTTAGACGGGTCCATCTCAACCTTTT
1 CCTTAGACGTATCTATCCCAACATTTTTAAGGTTGGCTTAGACGAGTCCATCCCAACCTTTT
4344817 AAAGTTTTCA
Statistics
Matches: 142, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
104 2 0.01
105 70 0.49
107 1 0.01
111 67 0.47
112 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.38
Consensus pattern (111 bp):
CCTTAGACGTATCTATCCCAACATTTTTAAGGTTGGCTTAGACGAGTCCATCCCAACCTTTTTAA
AATTTCCTTAGATGGATTAATCCCTATCCCAACCTTTTTAACGTTT
Found at i:4344832 original size:18 final size:18
Alignment explanation
Indices: 4344809--4344843 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
4344799 GGTCCATCTC
4344809 AACC-TTTTAAAGTTTTCA
1 AACCTTTTTAAA-TTTTCA
4344827 AACCTTTTTAAATTTTC
1 AACCTTTTTAAATTTTC
4344844 CTTAAAAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.31, C:0.17, G:0.03, T:0.49
Consensus pattern (18 bp):
AACCTTTTTAAATTTTCA
Found at i:4344882 original size:35 final size:35
Alignment explanation
Indices: 4344827--4344907 Score: 117
Period size: 35 Copynumber: 2.3 Consensus size: 35
4344817 AAAGTTTTCA
* *
4344827 AACCTTTTTAAATTTTCCTTAAAAGGGTCTATCCC
1 AACCTTTTTAAAGTTGCCTTAAAAGGGTCTATCCC
* *
4344862 AACCTTTTTAAGGTTGCCTTAAACGGGTCTATCCC
1 AACCTTTTTAAAGTTGCCTTAAAAGGGTCTATCCC
*
4344897 AACTTTTTTAA
1 AACCTTTTTAA
4344908 CAGTCGAACC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (35 bp):
AACCTTTTTAAAGTTGCCTTAAAAGGGTCTATCCC
Found at i:4344888 original size:88 final size:88
Alignment explanation
Indices: 4344739--4344904 Score: 224
Period size: 88 Copynumber: 1.9 Consensus size: 88
4344729 GGTCTATCCC
* * * * *
4344739 AACCTTTTTAAGGTTGCCTTACACGGGTTTATACCAACATTTTTAAGGTTGCCTTAGACGGGTCC
1 AACCTTTTTAAAGTTGCCTTAAAAGGGTCTATACCAACATTTTTAAGGTTGCCTTAAACGGGTCC
*
4344804 ATCTCAACCTTTTAAAGTTTTCA
66 ATCCCAACCTTTTAAAGTTTTCA
* * * * *
4344827 AACCTTTTTAAATTTTCCTTAAAAGGGTCTATCCCAACCTTTTTAAGGTTGCCTTAAACGGGTCT
1 AACCTTTTTAAAGTTGCCTTAAAAGGGTCTATACCAACATTTTTAAGGTTGCCTTAAACGGGTCC
*
4344892 ATCCCAACTTTTT
66 ATCCCAACCTTTT
4344905 TAACAGTCGA
Statistics
Matches: 66, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
88 66 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (88 bp):
AACCTTTTTAAAGTTGCCTTAAAAGGGTCTATACCAACATTTTTAAGGTTGCCTTAAACGGGTCC
ATCCCAACCTTTTAAAGTTTTCA
Found at i:4345466 original size:24 final size:24
Alignment explanation
Indices: 4345438--4345489 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
4345428 TTTCTAGAAG
* *
4345438 ATTTAG-TATTTATTAGTATAATAT
1 ATTTAGCT-TTTATTAGCATAAAAT
4345462 ATTTAGCTTTTATTAGCATAAAAT
1 ATTTAGCTTTTATTAGCATAAAAT
4345486 ATTT
1 ATTT
4345490 GAAATTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.52
Consensus pattern (24 bp):
ATTTAGCTTTTATTAGCATAAAAT
Found at i:4345702 original size:38 final size:38
Alignment explanation
Indices: 4345651--4345725 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
4345641 TAACGTTTAG
4345651 TTTTTAACAAAGTTGATGGCACTTTAAGGGCAAGTTCA
1 TTTTTAACAAAGTTGATGGCACTTTAAGGGCAAGTTCA
*
4345689 TTTTTAACAAAGTTGATGGCACTTTGAGGGCAAGTTC
1 TTTTTAACAAAGTTGATGGCACTTTAAGGGCAAGTTC
4345726 TACTTATGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (38 bp):
TTTTTAACAAAGTTGATGGCACTTTAAGGGCAAGTTCA
Found at i:4353447 original size:13 final size:13
Alignment explanation
Indices: 4353431--4353455 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4353421 ATCCAATAAT
4353431 AAGACTAAAAATA
1 AAGACTAAAAATA
4353444 AAGACTAAAAAT
1 AAGACTAAAAAT
4353456 TGTTCATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (13 bp):
AAGACTAAAAATA
Found at i:4354302 original size:21 final size:20
Alignment explanation
Indices: 4354242--4354302 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 20
4354232 AAACATATAT
*
4354242 TATATTATTTCAATTATAACTTA
1 TATATT-TTTTAATT-TAA-TTA
**
4354265 TAT-TTTTTTAAAGTAATTA
1 TATATTTTTTAATTTAATTA
4354284 TAATATTTTTTAATTTAAT
1 T-ATATTTTTTAATTTAAT
4354303 AAATTTTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 4 0.13
20 5 0.16
21 17 0.55
22 2 0.06
23 3 0.10
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (20 bp):
TATATTTTTTAATTTAATTA
Found at i:4366728 original size:19 final size:19
Alignment explanation
Indices: 4366671--4366743 Score: 79
Period size: 19 Copynumber: 4.2 Consensus size: 19
4366661 CTTGATTTGC
4366671 TGAAATATGAGTTTATGCA
1 TGAAATATGAGTTTATGCA
4366690 TGATAA-A--A--TTA--CA
1 TGA-AATATGAGTTTATGCA
*
4366703 TGGAATATGAGTTTATGCA
1 TGAAATATGAGTTTATGCA
4366722 TGAAATATGAGTTTATGCA
1 TGAAATATGAGTTTATGCA
4366741 TGA
1 TGA
4366744 TAATGGAAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
12 2 0.05
13 5 0.11
15 4 0.09
17 4 0.09
19 27 0.61
20 2 0.05
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (19 bp):
TGAAATATGAGTTTATGCA
Found at i:4377401 original size:19 final size:19
Alignment explanation
Indices: 4377344--4377416 Score: 79
Period size: 19 Copynumber: 4.2 Consensus size: 19
4377334 CTTGATTTGC
4377344 TGAAATATGAGTTTATGCA
1 TGAAATATGAGTTTATGCA
4377363 TGATAA-A--A--TTA--CA
1 TGA-AATATGAGTTTATGCA
*
4377376 TGGAATATGAGTTTATGCA
1 TGAAATATGAGTTTATGCA
4377395 TGAAATATGAGTTTATGCA
1 TGAAATATGAGTTTATGCA
4377414 TGA
1 TGA
4377417 TAATGGAAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
12 2 0.05
13 5 0.11
15 4 0.09
17 4 0.09
19 27 0.61
20 2 0.05
ACGTcount: A:0.38, C:0.05, G:0.21, T:0.36
Consensus pattern (19 bp):
TGAAATATGAGTTTATGCA
Found at i:4380316 original size:18 final size:20
Alignment explanation
Indices: 4380281--4380321 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
4380271 AAATATAAAA
*
4380281 TTTGAAATTTTTATAAATAT
1 TTTGAAATTTTGATAAATAT
*
4380301 TTTG-AATTTTGA-AAATCT
1 TTTGAAATTTTGATAAATAT
4380319 TTT
1 TTT
4380322 ACAAAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 8 0.42
19 7 0.37
20 4 0.21
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTGAAATTTTGATAAATAT
Found at i:4384125 original size:18 final size:20
Alignment explanation
Indices: 4384090--4384130 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
4384080 AAATATAAAA
*
4384090 TTTGAAATTTTTATAAATAT
1 TTTGAAATTTTGATAAATAT
*
4384110 TTTG-AATTTTGA-AAATCT
1 TTTGAAATTTTGATAAATAT
4384128 TTT
1 TTT
4384131 ACAAAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 8 0.42
19 7 0.37
20 4 0.21
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTGAAATTTTGATAAATAT
Found at i:4387967 original size:16 final size:17
Alignment explanation
Indices: 4387938--4387976 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
4387928 TCTATTTAAC
* *
4387938 ATAAAAATATACAACAA
1 ATAAAAATAAACAAAAA
4387955 ATAAAAA-AAACAAAAA
1 ATAAAAATAAACAAAAA
4387971 ATAAAA
1 ATAAAA
4387977 TTTTTACCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (17 bp):
ATAAAAATAAACAAAAA
Found at i:4388097 original size:11 final size:11
Alignment explanation
Indices: 4388081--4388114 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
4388071 TTCCCCCCTC
4388081 CCTTCTCTCTT
1 CCTTCTCTCTT
4388092 CCTTCTCTCTT
1 CCTTCTCTCTT
*
4388103 CCCTCTCTCTT
1 CCTTCTCTCTT
4388114 C
1 C
4388115 TTTTTTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (11 bp):
CCTTCTCTCTT
Found at i:4388598 original size:6 final size:6
Alignment explanation
Indices: 4388598--4388631 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
4388588 TTATTAGTAT
4388598 TATTAG TATTAG TATTAG TATTATG TATTAG TAT
1 TATTAG TATTAG TATTAG TATTA-G TATTAG TAT
4388632 ATATTTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.32, C:0.00, G:0.15, T:0.53
Consensus pattern (6 bp):
TATTAG
Found at i:4388758 original size:3 final size:3
Alignment explanation
Indices: 4388745--4388777 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
4388735 TATTCCAATG
*
4388745 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4388778 GTTTATGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:4389055 original size:64 final size:64
Alignment explanation
Indices: 4388981--4389112 Score: 164
Period size: 64 Copynumber: 2.1 Consensus size: 64
4388971 GTCGTATTAT
*
4388981 TATATTTTAATATTA-TA-TTATATAATTATA-TA-TACATATATCTTTTATATATATTATCATT
1 TATATTTTAATATTATTAGTTATAT-ATTACACTATTACATATAT-TTTTATA-ATATTAT-ATT
4389042 GTA
62 GTA
* * *
4389045 TATATTTTAATATTATTAGTTATATTTTACACTATTATATATATTTTTCTAATATTATATTGTA
1 TATATTTTAATATTATTAGTTATATATTACACTATTACATATATTTTTATAATATTATATTGTA
4389109 TATA
1 TATA
4389113 CTGTCGTTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
64 25 0.42
65 13 0.22
66 14 0.23
67 8 0.13
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (64 bp):
TATATTTTAATATTATTAGTTATATATTACACTATTACATATATTTTTATAATATTATATTGTA
Found at i:4389087 original size:19 final size:18
Alignment explanation
Indices: 4389043--4389102 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 18
4389033 ATTATCATTG
4389043 TATATATTTTAATATTAT
1 TATATATTTTAATATTAT
4389061 TAGTTATATTTTACACTATTAT
1 TA--TATATTTTA-A-TATTAT
*
4389083 ATATATTTTTCTAATATTAT
1 -TATATATTT-TAATATTAT
4389103 ATTGTATATA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
18 2 0.06
20 15 0.43
21 8 0.23
22 8 0.23
23 2 0.06
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (18 bp):
TATATATTTTAATATTAT
Found at i:4389544 original size:38 final size:37
Alignment explanation
Indices: 4389460--4389554 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
4389450 TATACGTACT
*
4389460 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
4389498 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
4389534 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
4389555 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:4391659 original size:19 final size:20
Alignment explanation
Indices: 4391619--4391662 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
4391609 GTTTCTTTTG
* *
4391619 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
4391638 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
4391657 GCATTA
1 GCATTA
4391663 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:4395954 original size:42 final size:42
Alignment explanation
Indices: 4395822--4395954 Score: 112
Period size: 42 Copynumber: 3.1 Consensus size: 42
4395812 AGTTTCAGAT
4395822 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
4395864 CTTGCC-ACTCT-CGTTTG-TAG-TAAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGAAGCAGATCGAAG--A-CAAAC
4395907 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
4395949 CTTGCC
1 CTTGCC
4395955 ACTCTCGTTT
Statistics
Matches: 64, Mismatches: 18, Indels: 18
0.64 0.18 0.18
Matches are distributed among these distances:
40 10 0.16
41 4 0.06
42 21 0.33
43 15 0.23
44 4 0.06
45 10 0.16
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:4396031 original size:86 final size:86
Alignment explanation
Indices: 4395769--4396115 Score: 529
Period size: 86 Copynumber: 4.1 Consensus size: 86
4395759 AGTAAAAATT
* * * * **
4395769 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAG-TTTCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
4395833 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
4395854 GAAGACAAACCTTGCCACTCTCGTTTGTAGTA-AGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
4395918 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
4395939 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
4396004 GCACTGACAGCGAAGTAGATC
66 GCATTGACAGCGAAGCAGATC
* * *
4396025 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTG-CTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
4396089 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
4396111 GAAGA
1 GAAGA
4396116 TGGCAGATTT
Statistics
Matches: 242, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
84 12 0.05
85 104 0.43
86 126 0.52
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:4396313 original size:132 final size:133
Alignment explanation
Indices: 4396064--4396468 Score: 717
Period size: 132 Copynumber: 3.1 Consensus size: 133
4396054 GCAGAGCTGG
*
4396064 TTGAAGATAT-CAGATCTTGCTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGAT-TGCAGATCTTGCCTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
*
4396128 CGTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
65 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
4396193 TAGA
130 TAGA
4396197 TTGAAGATTGCAGATCTTGCCTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCA-ATTTTAC
1 TTGAAGATTGCAGATCTTGCCTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
* *
4396261 CTCCCTGACCACATTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
66 CTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
4396326 AGA
131 AGA
* *
4396329 TTGAAGATTGCAGATCTTGCCTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTAC
1 TTGAAGATTGCAGATCTTGCCTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
*
4396394 CTCCCTGACTA-AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
66 CTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
4396458 AGA
131 AGA
4396461 TTGAAGAT
1 TTGAAGAT
4396469 CAAAGATGGC
Statistics
Matches: 262, Mismatches: 8, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
132 191 0.73
133 71 0.27
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (133 bp):
TTGAAGATTGCAGATCTTGCCTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
CTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
AGA
Found at i:4396381 original size:45 final size:45
Alignment explanation
Indices: 4396306--4396397 Score: 105
Period size: 45 Copynumber: 2.0 Consensus size: 45
4396296 ACTCTATCTC
* * ** * *
4396306 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCT
1 CCTGTATTTGGCAGTCGAACAGATCAAAGATGGCAGATCTTACCT
*
4396351 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACCT
1 CCTGTATTTGGCAGTCGAA-CAGATCAAAGATGGCAGATCTTACCT
4396396 CC
1 CC
4396398 CTGACTAAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
44 3 0.08
45 36 0.92
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (45 bp):
CCTGTATTTGGCAGTCGAACAGATCAAAGATGGCAGATCTTACCT
Found at i:4396464 original size:45 final size:45
Alignment explanation
Indices: 4396405--4396563 Score: 124
Period size: 45 Copynumber: 3.4 Consensus size: 45
4396395 TCCCTGACTA
* *
4396405 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGC
1 AGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
* * * * * * *
4396450 AGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGA-CT-AC
1 AGTGGAATACATTGAAG--C--CGAT---A-ATTCTATCTCCCTGT-ATTTGGC
*
4396502 AGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
1 AGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
*
4396547 AGTGGAATAGATTGAAG
1 AGTGGAATACATTGAAG
4396564 ATTGCAGATC
Statistics
Matches: 84, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
43 1 0.01
44 13 0.15
45 32 0.38
47 1 0.01
48 3 0.04
49 3 0.04
50 1 0.01
52 17 0.20
53 12 0.14
54 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (45 bp):
AGTGGAATACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGC
Found at i:4396523 original size:229 final size:228
Alignment explanation
Indices: 4396239--4396699 Score: 800
Period size: 229 Copynumber: 2.0 Consensus size: 228
4396229 GCAGCGAAGC
* *
4396239 AGATCGAAGATGGCAATTTTACCTCCCTGACCACATTGGAGTACATTGAAGCCGATAACTCTATC
1 AGATCAAAGATGGCAATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
4396304 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCC-TCCTGTATTTGGCAGCGA
66 TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGA
* *
4396368 AGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTA-AGTGGAGTACATTGAAGCCGATAACTC
131 AGCAGATCAAAGATGGCAGATTTTACCTCCCGGACCACAGTGGAGTACATTGAAGCCGATAACTC
4396432 TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
4396465 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCA-ATTTTACCTCC--CTGACCACAGTGGAGTACATTGAAGCCGATAACTCT
4396530 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
63 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
*
4396595 CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCGGACCACAGTGGAGTACATTGAAGCTGATAA
128 CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCGGACCACAGTGGAGTACATTGAAGCCGATAA
*
4396660 TTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
193 CTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
4396696 AGAT
1 AGAT
4396700 TGCAGATCTT
Statistics
Matches: 221, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
226 14 0.06
227 11 0.05
229 81 0.37
230 53 0.24
231 62 0.28
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (228 bp):
AGATCAAAGATGGCAATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATC
TCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGA
AGCAGATCAAAGATGGCAGATTTTACCTCCCGGACCACAGTGGAGTACATTGAAGCCGATAACTC
TATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:4396534 original size:97 final size:94
Alignment explanation
Indices: 4396371--4396927 Score: 367
Period size: 94 Copynumber: 6.0 Consensus size: 94
4396361 GCAGCGAAGC
4396371 AGATCAAAGATGGCAGATTTTACCTCCCTGACTAAGTGGAGTACATTGAAGCCGATAACTCTATC
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTAAGTGGAGTACATTGAAGCCGATAACTCTATC
4396436 TCCCTGTATTTGGCAGTGGAATAGATTGA
66 TCCCTGTATTTGGCAGTGGAATAGATTGA
* *
4396465 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTA-AGTGGAGTACATTGAAGCCGATAACTCT
4396530 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
63 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * * * ** ** ** *
4396562 AGAT------T-GCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT--AAGTGGAGTACATTGAAGCCGATA-ACT
* * * *** * *
4396620 TTACCTCCC-GGA--CCACAGTGGAGTACATTGA
61 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * * * ** * *
4396651 AG--C--TGAT---A-ATTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATC
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-CT--AAGTGGAGTACATTGAAG-CCG-ATAAC
** * * *
4396708 T-TGCCTTCCTGTATTTGGCAG-CG---A-A--GC
60 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
4396735 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAATGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTA-AGTGGAGTACATTGAAGCCGATAACTCTAT
* *
4396800 CTCTCTGCATTTGGCAGTGGAATAGATTGA
65 CTCCCTGTATTTGGCAGTGGAATAGATTGA
4396830 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACA-TGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTA-AGTGGAGTACATTGAAGCCGATAACTCTAT
4396894 CTCCCTGTATTTGGCAGTGGAATAGATTGA
65 CTCCCTGTATTTGGCAGTGGAATAGATTGA
4396924 AGAT
1 AGAT
4396928 TGTAGATCTT
Statistics
Matches: 356, Mismatches: 73, Indels: 68
0.72 0.15 0.14
Matches are distributed among these distances:
84 3 0.01
86 2 0.01
87 5 0.01
88 55 0.15
89 37 0.10
90 16 0.04
91 22 0.06
92 23 0.06
93 1 0.00
94 86 0.24
95 37 0.10
96 6 0.02
97 63 0.18
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (94 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTAAGTGGAGTACATTGAAGCCGATAACTCTATC
TCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:4396594 original size:46 final size:46
Alignment explanation
Indices: 4396535--4396728 Score: 143
Period size: 46 Copynumber: 4.3 Consensus size: 46
4396525 ATTCTATCTC
4396535 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
* * ** * * *
4396581 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACC-T
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGCCTT
* * *** * * * * *
4396626 CCCGGA--CCACAGTGGAGTACATTGAAG-CTG-ATAATTCTAT--CTC
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGCCTT
4396669 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
4396715 CCTGTATTTGGCAG
1 CCTGTATTTGGCAG
4396729 CGAAGCAGAT
Statistics
Matches: 103, Mismatches: 33, Indels: 24
0.64 0.21 0.15
Matches are distributed among these distances:
41 1 0.01
42 3 0.03
43 15 0.15
44 4 0.04
45 27 0.26
46 52 0.50
47 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (46 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTT
Done.