Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 162 of 172
Found at i:47557762 original size:42 final size:42
Alignment explanation
Indices: 47557684--47557763 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
47557674 TTTATTATTA
* *
47557684 TTTATTTTTCTTAATGTTTATTTTATTTTTTATTTTGGTTAT
1 TTTATTTTTCTTAATGTTTATTTCATTTTCTATTTTGGTTAT
** *
47557726 TTTATTTTTCTTCCTTGTTTATTTCCTTTTCT-TTTTGG
1 TTTATTTTTCTT-AATGTTTATTTCATTTTCTATTTTGG
47557764 CTTTCTTGCG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 18 0.56
43 14 0.44
ACGTcount: A:0.11, C:0.09, G:0.07, T:0.72
Consensus pattern (42 bp):
TTTATTTTTCTTAATGTTTATTTCATTTTCTATTTTGGTTAT
Found at i:47558359 original size:27 final size:27
Alignment explanation
Indices: 47558329--47558381 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
47558319 TACAAATACA
47558329 TTTTTTAAAAT-TTTATTAAATTTATAG
1 TTTTTTAAAATATTTA-TAAATTTATAG
* *
47558356 TTTTTTATAATATTTATAAGTTTATA
1 TTTTTTAAAATATTTATAAATTTATA
47558382 TCAATTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (27 bp):
TTTTTTAAAATATTTATAAATTTATAG
Found at i:47558363 original size:19 final size:20
Alignment explanation
Indices: 47558339--47558378 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
47558329 TTTTTTAAAA
47558339 TTTTATTAA-ATTTAT-AGTT
1 TTTTA-TAATATTTATAAGTT
47558358 TTTTATAATATTTATAAGTT
1 TTTTATAATATTTATAAGTT
47558378 T
1 T
47558379 ATATCAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.16
19 11 0.58
20 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTTATAATATTTATAAGTT
Found at i:47562153 original size:22 final size:22
Alignment explanation
Indices: 47562128--47562196 Score: 56
Period size: 22 Copynumber: 3.3 Consensus size: 22
47562118 AAGAATTTTC
47562128 AAGTTATCATTTAGATTTAATA
1 AAGTTATCATTTAGATTTAATA
* * * *
47562150 AAGTGAT--TTTCG-TTT-TTC
1 AAGTTATCATTTAGATTTAATA
* *
47562168 AAGGTATCATTTGGATTTAATA
1 AAGTTATCATTTAGATTTAATA
47562190 AAGTTAT
1 AAGTTAT
47562197 TTTCATTCTC
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
18 6 0.18
19 3 0.09
20 8 0.24
21 3 0.09
22 13 0.39
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.46
Consensus pattern (22 bp):
AAGTTATCATTTAGATTTAATA
Found at i:47562178 original size:40 final size:40
Alignment explanation
Indices: 47562123--47562200 Score: 129
Period size: 40 Copynumber: 1.9 Consensus size: 40
47562113 TTTAAAAGAA
*
47562123 TTTTCAAGTTATCATTTAGATTTAATAAAGTGATTTTCGT
1 TTTTCAAGGTATCATTTAGATTTAATAAAGTGATTTTCGT
* *
47562163 TTTTCAAGGTATCATTTGGATTTAATAAAGTTATTTTC
1 TTTTCAAGGTATCATTTAGATTTAATAAAGTGATTTTC
47562201 ATTCTCTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (40 bp):
TTTTCAAGGTATCATTTAGATTTAATAAAGTGATTTTCGT
Found at i:47580153 original size:24 final size:24
Alignment explanation
Indices: 47580121--47580170 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
47580111 ATCAACATGA
47580121 ATAGTTTGACTTTTGTTGATTTAT
1 ATAGTTTGACTTTTGTTGATTTAT
47580145 ATAGTTTGACTTTTGTTGATTTAT
1 ATAGTTTGACTTTTGTTGATTTAT
47580169 AT
1 AT
47580171 TCTTTTGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.04, G:0.16, T:0.58
Consensus pattern (24 bp):
ATAGTTTGACTTTTGTTGATTTAT
Found at i:47580223 original size:16 final size:16
Alignment explanation
Indices: 47580202--47580235 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
47580192 CAAAATTTCA
* *
47580202 TCAATCTTTCCAATTT
1 TCAATCCTTCAAATTT
47580218 TCAATCCTTCAAATTT
1 TCAATCCTTCAAATTT
47580234 TC
1 TC
47580236 TTTAGACCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (16 bp):
TCAATCCTTCAAATTT
Found at i:47580384 original size:34 final size:35
Alignment explanation
Indices: 47580340--47580406 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
47580330 CAGTAAAATA
*
47580340 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
47580374 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
47580407 CTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:47581691 original size:3 final size:3
Alignment explanation
Indices: 47581685--47581728 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
47581675 ATCATCATCA
47581685 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
47581729 CCCAACGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:47598077 original size:15 final size:15
Alignment explanation
Indices: 47598028--47598078 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
47598018 TTTCCTCATA
*
47598028 TTACATTTTAGTCAC
1 TTACGTTTTAGTCAC
* *
47598043 TTATGTTTGAGAT-A-
1 TTACGTTTTAG-TCAC
47598057 TTACGTTTTAGTCAC
1 TTACGTTTTAGTCAC
47598072 TTACGTT
1 TTACGTT
47598079 ATTGTGTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
13 1 0.04
14 10 0.36
15 16 0.57
16 1 0.04
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (15 bp):
TTACGTTTTAGTCAC
Found at i:47606964 original size:18 final size:17
Alignment explanation
Indices: 47606937--47606973 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
47606927 AAAGATACCG
47606937 ATAAATTAATTTTATTT
1 ATAAATTAATTTTATTT
47606954 ATAATATTAATTTTATTT
1 ATAA-ATTAATTTTATTT
47606972 AT
1 AT
47606974 GTAATATGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATAAATTAATTTTATTT
Found at i:47610707 original size:24 final size:24
Alignment explanation
Indices: 47610640--47610707 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 24
47610630 TTTAAAAAAT
*
47610640 AATTATA-TTAA-AAATATTATTA
1 AATTATATTTAATAATTATTATTA
* ** * *
47610662 AATTATATATGGTTATTTTTATTA
1 AATTATATTTAATAATTATTATTA
47610686 AATTATATTTAATAATTATTAT
1 AATTATATTTAATAATTATTAT
47610708 ATTAAAAGAT
Statistics
Matches: 33, Mismatches: 11, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
22 7 0.21
23 1 0.03
24 25 0.76
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (24 bp):
AATTATATTTAATAATTATTATTA
Found at i:47610750 original size:26 final size:27
Alignment explanation
Indices: 47610654--47610751 Score: 68
Period size: 26 Copynumber: 3.8 Consensus size: 27
47610644 ATATTAAAAA
*
47610654 TATTATTAAATTATA--T-ATGGTTATT
1 TATTATTAAATTATATTTAAT-ATTATT
47610679 T-TTATTAAATTATATTTAATAATTA-T
1 TATTATTAAATTATATTTAAT-ATTATT
** *
47610705 TA-TATTAAAAGATGA-CTAAT-TTATT
1 TATTATTAAATTAT-ATTTAATATTATT
*
47610730 TATTATTAAATTATTTTTAATA
1 TATTATTAAATTATATTTAATA
47610752 ATAATCCTGT
Statistics
Matches: 55, Mismatches: 9, Indels: 16
0.69 0.11 0.20
Matches are distributed among these distances:
24 16 0.29
25 4 0.07
26 29 0.53
27 6 0.11
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (27 bp):
TATTATTAAATTATATTTAATATTATT
Found at i:47612110 original size:25 final size:25
Alignment explanation
Indices: 47612065--47612114 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
47612055 GGGTAGAGTG
47612065 GAAAAGTGAAAGAATAGAAAGAAAA
1 GAAAAGTGAAAGAATAGAAAGAAAA
47612090 GAAAAGTAGAAA-AAT-GAAAAGAAAA
1 GAAAAGT-GAAAGAATAG-AAAGAAAA
47612115 TTAATTCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 1 0.04
25 18 0.78
26 4 0.17
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.08
Consensus pattern (25 bp):
GAAAAGTGAAAGAATAGAAAGAAAA
Found at i:47645070 original size:12 final size:12
Alignment explanation
Indices: 47645053--47645077 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47645043 TTCAAGGGGG
47645053 AATGTATTAGAA
1 AATGTATTAGAA
47645065 AATGTATTAGAA
1 AATGTATTAGAA
47645077 A
1 A
47645078 CAATGAAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (12 bp):
AATGTATTAGAA
Found at i:47645926 original size:25 final size:25
Alignment explanation
Indices: 47645896--47645943 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
47645886 TAGACAAATG
47645896 AAAAAAT-ATATACAATATAATACTA
1 AAAAAATAATAT-CAATATAATACTA
*
47645921 AAAAAATAATATGAATATAATAC
1 AAAAAATAATATCAATATAATAC
47645944 AAATAAACCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.65, C:0.06, G:0.02, T:0.27
Consensus pattern (25 bp):
AAAAAATAATATCAATATAATACTA
Found at i:47645950 original size:28 final size:28
Alignment explanation
Indices: 47645880--47645950 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 28
47645870 ATGAACCTTG
* * *
47645880 CAATATTAGACAAATGAAAAAATATATA
1 CAATATAATACAAATAAAAAAATATATA
47645908 CAATATAATAC---TAAAAAAATA-ATA
1 CAATATAATACAAATAAAAAAATATATA
*
47645932 TGAATATAATACAAATAAA
1 -CAATATAATACAAATAAA
47645951 CCAATATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
24 3 0.09
25 19 0.54
28 13 0.37
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.25
Consensus pattern (28 bp):
CAATATAATACAAATAAAAAAATATATA
Found at i:47645956 original size:25 final size:25
Alignment explanation
Indices: 47645909--47645957 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
47645899 AAATATATAC
*
47645909 AATATAATACTAAAAAAATAATATG
1 AATATAATACTAAAAAAACAATATG
*
47645934 AATATAATAC-AAATAAACCAATAT
1 AATATAATACTAAA-AAAACAATAT
47645958 TTTAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 3 0.14
25 18 0.86
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.27
Consensus pattern (25 bp):
AATATAATACTAAAAAAACAATATG
Found at i:47648043 original size:6 final size:6
Alignment explanation
Indices: 47648032--47648059 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
47648022 ACTTTTAAAA
47648032 TATTTT TATTTT TATTTT TATTTT TATT
1 TATTTT TATTTT TATTTT TATTTT TATT
47648060 ATTTTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TATTTT
Found at i:47649983 original size:20 final size:21
Alignment explanation
Indices: 47649958--47650013 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
47649948 TTGGTCCTTA
**
47649958 TTTTTTAATAAAATTTGATT-
1 TTTTTTAATAAAATTAAATTG
*
47649978 TTTTTTAAAAAAAATTAAATTG
1 TTTTTT-AATAAAATTAAATTG
47650000 TTTGTTTAATAAAA
1 TTT-TTTAATAAAA
47650014 ATACTAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 6 0.21
21 11 0.38
22 9 0.31
23 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (21 bp):
TTTTTTAATAAAATTAAATTG
Found at i:47664102 original size:49 final size:49
Alignment explanation
Indices: 47664023--47664119 Score: 158
Period size: 49 Copynumber: 2.0 Consensus size: 49
47664013 AACCCCTCTA
*
47664023 TTTTTTTACACTCAATCGAGCACTTGAACTTTCAAAATGCATCAAAAAC
1 TTTTTTTACACTCAATCGAGCACTTAAACTTTCAAAATGCATCAAAAAC
* * *
47664072 TTTTTTTTCACTCAATTGAGTACTTAAACTTTCAAAATGCATCAAAAA
1 TTTTTTTACACTCAATCGAGCACTTAAACTTTCAAAATGCATCAAAAA
47664120 TACCCTCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.37, C:0.20, G:0.07, T:0.36
Consensus pattern (49 bp):
TTTTTTTACACTCAATCGAGCACTTAAACTTTCAAAATGCATCAAAAAC
Found at i:47664552 original size:28 final size:28
Alignment explanation
Indices: 47664483--47664571 Score: 92
Period size: 28 Copynumber: 3.1 Consensus size: 28
47664473 TCTTTACATT
* * *
47664483 TTTTATAAATTTCTTACGAATTTATAAAA
1 TTTTATAAATTT-TTACGATTTTTTTAAA
*
47664512 TTTTATAATTTTTTACGATTTTTTTAAA
1 TTTTATAAATTTTTACGATTTTTTTAAA
*
47664540 TTTTACAAATTTTTA--ATTTTTTTTACAA
1 TTTTATAAATTTTTACGA-TTTTTTTA-AA
47664568 TTTT
1 TTTT
47664572 TCTAATATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
26 1 0.02
27 8 0.15
28 32 0.62
29 11 0.21
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.60
Consensus pattern (28 bp):
TTTTATAAATTTTTACGATTTTTTTAAA
Found at i:47664554 original size:38 final size:39
Alignment explanation
Indices: 47664503--47664601 Score: 96
Period size: 38 Copynumber: 2.5 Consensus size: 39
47664493 TTCTTACGAA
* * *
47664503 TTTATAAAATTTT-ATAATTTTTTACGATTTTTTTAA-AT
1 TTTACAAAATTTTAAT-ATTTTTTACAATTTTTCTAATAT
* *
47664541 TTTACAAATTTTTAATTTTTTTTACAATTTTTCTAATAT
1 TTTACAAAATTTTAATATTTTTTACAATTTTTCTAATAT
*
47664580 TTTA-ATATATTATTAATATTTT
1 TTTACA-AAATT-TTAATATTTT
47664602 AATATTTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
38 29 0.59
39 11 0.22
40 9 0.18
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (39 bp):
TTTACAAAATTTTAATATTTTTTACAATTTTTCTAATAT
Found at i:47664572 original size:29 final size:27
Alignment explanation
Indices: 47664530--47664610 Score: 69
Period size: 27 Copynumber: 2.9 Consensus size: 27
47664520 TTTTTTACGA
47664530 TTTTTTTAAATTTTACAAAT-TTTTAAT
1 TTTTTTTAAATTTT-CAAATATTTTAAT
*
47664557 TTTTTTTACAATTTTTCTAATATTTTAAT
1 TTTTTTTA-AA-TTTTCAAATATTTTAAT
* *
47664586 ATATTATTAATATTTT--AATATTTTA
1 -TTTTTTTAA-ATTTTCAAATATTTTA
47664611 TTAAAATTTA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
27 17 0.37
28 6 0.13
29 16 0.35
30 7 0.15
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (27 bp):
TTTTTTTAAATTTTCAAATATTTTAAT
Found at i:47664582 original size:19 final size:18
Alignment explanation
Indices: 47664510--47664602 Score: 64
Period size: 19 Copynumber: 4.9 Consensus size: 18
47664500 GAATTTATAA
* *
47664510 AATTTTATAATTTTTTAC
1 AATTTTTTAATATTTTAC
*
47664528 GATTTTTTTAA-ATTTTAC
1 -AATTTTTTAATATTTTAC
* *
47664546 AAATTTTTAATTTTTTTTAC
1 AATTTTTTAA--TATTTTAC
47664566 AATTTTTCTAATATTTTA-
1 AATTTTT-TAATATTTTAC
*
47664584 ATATATTATTAATATTTTA
1 A-AT-TTTTTAATATTTTA
47664603 ATATTTTATT
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
17 8 0.14
18 7 0.12
19 26 0.44
20 15 0.25
21 3 0.05
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (18 bp):
AATTTTTTAATATTTTAC
Found at i:47664603 original size:19 final size:19
Alignment explanation
Indices: 47664574--47664628 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
47664564 ACAATTTTTC
47664574 TAATATTTTAATATATTAT
1 TAATATTTTAATATATTAT
*
47664593 TAATATTTTAATATTTTAT
1 TAATATTTTAATATATTAT
*
47664612 TAA-AATTTAATAATATT
1 TAATATTTTAAT-ATATT
47664629 TATAGTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
18 7 0.22
19 25 0.78
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TAATATTTTAATATATTAT
Found at i:47664850 original size:91 final size:91
Alignment explanation
Indices: 47664687--47664856 Score: 227
Period size: 91 Copynumber: 1.9 Consensus size: 91
47664677 AAAAGCATGG
* *
47664687 GCTTAATTGCATTTTTTGAAAAAGTTTGAGCATCTTTTTGATCTATTTTGAAAGTTCAAGTACCT
1 GCTTAATTGCATTTTTTGAAAAAGTTTGAGCACCTTTTTGATCTATTTTAAAAGTTCAAGTACCT
* *
47664752 AATTGAGTGTAAAAGATAAAGTAGGA
66 AAATGAGTGAAAAAGATAAAGTAGGA
* * * * *
47664778 GCTTAATTG-ATTTCTTTGAAAAGGTTTGAGGACCTTTTTGATGTATTTTAAAATTTTAAGTA-C
1 GCTTAATTGCATTT-TTTGAAAAAGTTTGAGCACCTTTTTGATCTATTTTAAAAGTTCAAGTACC
47664841 TCAAATGAGTGAAAAA
65 T-AAATGAGTGAAAAA
47664857 AAAATTTAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
90 6 0.09
91 62 0.91
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.39
Consensus pattern (91 bp):
GCTTAATTGCATTTTTTGAAAAAGTTTGAGCACCTTTTTGATCTATTTTAAAAGTTCAAGTACCT
AAATGAGTGAAAAAGATAAAGTAGGA
Found at i:47670455 original size:26 final size:26
Alignment explanation
Indices: 47670423--47670491 Score: 104
Period size: 26 Copynumber: 2.7 Consensus size: 26
47670413 ATCAGGAAGC
47670423 TCCCGA-TATATGGCTCTTTGTGAGCT
1 TCCCGATTA-ATGGCTCTTTGTGAGCT
*
47670449 TCCCGATTAAAGGCTCTTTGTGAGCT
1 TCCCGATTAATGGCTCTTTGTGAGCT
*
47670475 TCCTGATTAATGGCTCT
1 TCCCGATTAATGGCTCT
47670492 CCGAAGCTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
26 37 0.95
27 2 0.05
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
TCCCGATTAATGGCTCTTTGTGAGCT
Found at i:47671886 original size:12 final size:12
Alignment explanation
Indices: 47671865--47671910 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
47671855 CGGCCCGAAG
*
47671865 AAGAAGAAGAAA
1 AAGAAAAAGAAA
47671877 AAGAAAAAGAAA
1 AAGAAAAAGAAA
*
47671889 GAAGGAAAAAGAGA
1 -AA-GAAAAAGAAA
47671903 AAGAAAAA
1 AAGAAAAA
47671911 AAGAAATATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 17 0.57
13 4 0.13
14 9 0.30
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAGAAAAAGAAA
Found at i:47671911 original size:14 final size:15
Alignment explanation
Indices: 47671861--47671914 Score: 53
Period size: 14 Copynumber: 3.7 Consensus size: 15
47671851 GGTACGGCCC
*
47671861 GAAGAAGAAGAAGAAA
1 GAAGAAAAAG-AGAAA
47671877 -AAG-AAAA-AGAAA
1 GAAGAAAAAGAGAAA
47671889 GAAGGAAAAAGAGAAA
1 GAA-GAAAAAGAGAAA
47671905 GAA-AAAAAGA
1 GAAGAAAAAGA
47671915 AATATATCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
12 5 0.15
13 2 0.06
14 11 0.33
15 7 0.21
16 8 0.24
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (15 bp):
GAAGAAAAAGAGAAA
Found at i:47671916 original size:20 final size:20
Alignment explanation
Indices: 47671871--47671916 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
47671861 GAAGAAGAAG
*
47671871 AAGAAAAAGAAAAAGAAAGA
1 AAGAAAAAGAAAAAGAAAAA
* *
47671891 AGGAAAAAGAGAAAGAAAAA
1 AAGAAAAAGAAAAAGAAAAA
47671911 AAGAAA
1 AAGAAA
47671917 TATATCACAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (20 bp):
AAGAAAAAGAAAAAGAAAAA
Found at i:47672111 original size:34 final size:33
Alignment explanation
Indices: 47672073--47672137 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 33
47672063 AGCCCAAATA
*
47672073 CAGGCCCAGCGCAGCAGCAGGCCCAGCAGGCCCC
1 CAGGCCCAGCGCAGCAGCA-GCCCAACAGGCCCC
*
47672107 CAGGCCCAGTGCAGCAGCAGCCCAACAGGCC
1 CAGGCCCAGCGCAGCAGCAGCCCAACAGGCC
47672138 AGCCCAGTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 11 0.38
34 18 0.62
ACGTcount: A:0.23, C:0.45, G:0.31, T:0.02
Consensus pattern (33 bp):
CAGGCCCAGCGCAGCAGCAGCCCAACAGGCCCC
Found at i:47672163 original size:10 final size:10
Alignment explanation
Indices: 47672150--47672197 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
47672140 CCCAGTCCAG
47672150 AAAAAAAAGA
1 AAAAAAAAGA
47672160 AAAAAAAGAGA
1 AAAAAAA-AGA
**
47672171 GGAAAAAAGA
1 AAAAAAAAGA
* *
47672181 AGATAAAAGA
1 AAAAAAAAGA
47672191 AAAAAAA
1 AAAAAAA
47672198 GGGTTTTAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
10 23 0.74
11 8 0.26
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:47672388 original size:11 final size:11
Alignment explanation
Indices: 47672357--47672405 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 11
47672347 GTATTTATAT
47672357 TTTTAATTTAA
1 TTTTAATTTAA
*
47672368 -TTCAATTTTAA
1 TTTTAA-TTTAA
47672379 TTTTAATTT-A
1 TTTTAATTTAA
*
47672389 TTTTAA-ATAA
1 TTTTAATTTAA
47672399 TTTTAAT
1 TTTTAAT
47672406 AAATAAGGCA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
9 1 0.03
10 18 0.58
11 8 0.26
12 4 0.13
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAATTTAA
Found at i:47672852 original size:18 final size:18
Alignment explanation
Indices: 47672674--47672950 Score: 145
Period size: 17 Copynumber: 15.5 Consensus size: 18
47672664 AAAAATCAGG
*
47672674 TTTCAAAAATTGTCGTGT
1 TTTCAAAAATTCTCGTGT
* *
47672692 TTT-AAAAATTTTCATG-
1 TTTCAAAAATTCTCGTGT
*
47672708 TTTCTAAAATGT-T--TGT
1 TTTCAAAAAT-TCTCGTGT
*
47672724 ATTTCAAAAAATCCTCGTGT
1 -TTTC-AAAAATTCTCGTGT
* *
47672744 TTTCAAAAACTCTCATG-
1 TTTCAAAAATTCTCGTGT
*
47672761 TCTCAAAAA-TCTTCGTGT
1 TTTCAAAAATTC-TCGTGT
*
47672779 TTTC-AAAATTCTAGTG-
1 TTTCAAAAATTCTCGTGT
* *
47672795 TTTCAAAAATTTTCATGT
1 TTTCAAAAATTCTCGTGT
* *
47672813 TTTCAAAAATTTCCCCTGT
1 TTTCAAAAA-TTCTCGTGT
*
47672832 TTTCAAAAATTCTCGTAT
1 TTTCAAAAATTCTCGTGT
* * *
47672850 TTT-GAAAATTTTCTTGT
1 TTTCAAAAATTCTCGTGT
47672867 TTTCAAAAAAAAAACTT-TCGTGT
1 TTTC-----AAAAA-TTCTCGTGT
*
47672890 TTT-ATAAA-TCTCCGTGT
1 TTTCAAAAATTCT-CGTGT
*
47672907 TTTCAAAAAATTCTCGT-C
1 TTTC-AAAAATTCTCGTGT
47672925 TTTCAAAAATT-TCCGTG-
1 TTTCAAAAATTCT-CGTGT
47672942 TTTCAAAAA
1 TTTCAAAAA
47672951 AAAATCCTCG
Statistics
Matches: 201, Mismatches: 30, Indels: 57
0.70 0.10 0.20
Matches are distributed among these distances:
15 3 0.01
16 11 0.05
17 94 0.47
18 47 0.23
19 26 0.13
20 6 0.03
23 12 0.06
24 2 0.01
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (18 bp):
TTTCAAAAATTCTCGTGT
Found at i:47672951 original size:18 final size:18
Alignment explanation
Indices: 47672895--47672951 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
47672885 CGTGTTTTAT
*
47672895 AAATCTCCGTGTTTTCAAA
1 AAATTTCCGTG-TTTCAAA
*
47672914 AAA-TTCTCGTCTTTC-AA
1 AAATTTC-CGTGTTTCAAA
47672931 AAATTTCCGTGTTTCAAA
1 AAATTTCCGTGTTTCAAA
47672949 AAA
1 AAA
47672952 AAATCCTCGT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 12 0.38
18 14 0.44
19 6 0.19
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (18 bp):
AAATTTCCGTGTTTCAAA
Found at i:47673020 original size:22 final size:22
Alignment explanation
Indices: 47672977--47673018 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
47672967 ATAATTTATC
*
47672977 AAAATTTTTGTGTTTTCAAAAT
1 AAAATTTTTGTGTTTTAAAAAT
47672999 AAAA-TTTTGTGTTTTAAAAA
1 AAAATTTTTGTGTTTTAAAAA
47673019 ATTCTCATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (22 bp):
AAAATTTTTGTGTTTTAAAAAT
Found at i:47673035 original size:17 final size:18
Alignment explanation
Indices: 47673008--47673057 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
47672998 TAAAATTTTG
*
47673008 TGTTTTAAAAAATTCTCA
1 TGTTTTCAAAAATTCTCA
* * *
47673026 TG-TTTCAAAAACTGTCG
1 TGTTTTCAAAAATTCTCA
47673043 TGTTTTCAAAAATTC
1 TGTTTTCAAAAATTC
47673058 CCGTGTTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 13 0.52
18 12 0.48
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (18 bp):
TGTTTTCAAAAATTCTCA
Found at i:47673062 original size:18 final size:18
Alignment explanation
Indices: 47673007--47673064 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
47672997 ATAAAATTTT
*
47673007 GTGTTTTAAAAAATTCTC
1 GTGTTTTCAAAAATTCTC
* * *
47673025 ATG-TTTCAAAAACTGTC
1 GTGTTTTCAAAAATTCTC
*
47673042 GTGTTTTCAAAAATTCCC
1 GTGTTTTCAAAAATTCTC
47673060 GTGTT
1 GTGTT
47673065 AAAAAATTTT
Statistics
Matches: 31, Mismatches: 8, Indels: 2
0.76 0.20 0.05
Matches are distributed among these distances:
17 13 0.42
18 18 0.58
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (18 bp):
GTGTTTTCAAAAATTCTC
Found at i:47673111 original size:18 final size:19
Alignment explanation
Indices: 47673079--47673132 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
47673069 AATTTTTATG
47673079 TTTTCGTGTTTTCAAAAAA
1 TTTTCGTGTTTTCAAAAAA
47673098 TTTTCGTG-TTTC-AAAAA
1 TTTTCGTGTTTTCAAAAAA
47673115 TCTTT-GTGTTTTCAAAAA
1 T-TTTCGTGTTTTCAAAAA
47673133 TTATTATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.28
18 11 0.34
19 12 0.38
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (19 bp):
TTTTCGTGTTTTCAAAAAA
Found at i:47673133 original size:18 final size:18
Alignment explanation
Indices: 47673079--47673134 Score: 80
Period size: 18 Copynumber: 3.1 Consensus size: 18
47673069 AATTTTTATG
47673079 TTTTCGTGTTTTCAAAAAA
1 TTTTCGTGTTTTC-AAAAA
47673098 TTTTCGTG-TTTCAAAAA
1 TTTTCGTGTTTTCAAAAA
47673115 TCTTT-GTGTTTTCAAAAA
1 T-TTTCGTGTTTTCAAAAA
47673133 TT
1 TT
47673135 ATTATTTTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 10 0.29
18 17 0.49
19 8 0.23
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
TTTTCGTGTTTTCAAAAA
Found at i:47684163 original size:7 final size:7
Alignment explanation
Indices: 47684159--47684206 Score: 62
Period size: 7 Copynumber: 6.7 Consensus size: 7
47684149 ATAAAAAACA
*
47684159 AAAAAAC
1 AAAAAAG
47684166 AAAAAAAG
1 AA-AAAAG
47684174 AAAAAAG
1 AAAAAAG
47684181 AAAAAAG
1 AAAAAAG
47684188 AAAAAA-
1 AAAAAAG
47684194 AGAAAAAG
1 A-AAAAAG
47684202 AAAAA
1 AAAAA
47684207 TCAAGATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
6 1 0.03
7 29 0.78
8 7 0.19
ACGTcount: A:0.88, C:0.02, G:0.10, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:47684169 original size:15 final size:14
Alignment explanation
Indices: 47684137--47684206 Score: 70
Period size: 14 Copynumber: 5.0 Consensus size: 14
47684127 ATTATGCCTG
* *
47684137 AAAAAAAAGTAGATA
1 AAAAAAAAG-AAAAA
*
47684152 AAAAACAA-AAAAA
1 AAAAAAAAGAAAAA
*
47684165 CAAAAAAAGAAAAA
1 AAAAAAAAGAAAAA
*
47684179 AGAAAAAAGAAAAA
1 AAAAAAAAGAAAAA
*
47684193 AAGAAAAAGAAAAA
1 AAAAAAAAGAAAAA
47684207 TCAAGATGAA
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
13 9 0.20
14 29 0.64
15 7 0.16
ACGTcount: A:0.84, C:0.03, G:0.10, T:0.03
Consensus pattern (14 bp):
AAAAAAAAGAAAAA
Found at i:47684177 original size:6 final size:7
Alignment explanation
Indices: 47684167--47684206 Score: 64
Period size: 7 Copynumber: 5.7 Consensus size: 7
47684157 CAAAAAAACA
47684167 AAAAAAG
1 AAAAAAG
47684174 AAAAAAG
1 AAAAAAG
47684181 AAAAAAG
1 AAAAAAG
47684188 AAAAAA-
1 AAAAAAG
47684194 AGAAAAAG
1 A-AAAAAG
47684202 AAAAA
1 AAAAA
47684207 TCAAGATGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 1 0.03
7 29 0.94
8 1 0.03
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:47685997 original size:76 final size:78
Alignment explanation
Indices: 47685064--47686701 Score: 1773
Period size: 76 Copynumber: 20.8 Consensus size: 78
47685054 AAGAATTTTT
* * * * *
47685064 TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGAGTCAC
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
*
47685129 GTCGAGGTA--T-
66 GCCGAGGTATTTC
* * * *
47685139 TTTTAAATTTCT-ATTTTCAAAAAAATCAACTTATATTGCGAGAAGTGAGTTGCGCCTCGGGTCG
1 TTTTAAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT--
* *
47685203 CACGCTGAGGTATTTTC
63 CATGCCGAGGTA-TTTC
* *
47685220 TTTTAAATCTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCA
1 TTTTAAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* *
47685285 CGCTGAGGTATCTTC
65 TGCCGAGGTAT-TTC
* ** * * * *
47685300 AATTTATGTTTCTCTGTTTTTCAAAAAAATCAACTTATATTGCGAGAAGTGAGTTGGGCCTCAGG
1 -TTTTA-AATT-TCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
47685365 TCGCACGCTGAGGTATTTC
62 T--CATGCCGAGGTATTTC
*
47685384 TTTTTAATTTCTGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTAAATTTCTG-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* *
47685449 CGCTGAGGTATTTTC
65 TGCCGAGGTA-TTTC
*** * *
47685464 AATTTATGTTTTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGG
1 --TTT-TAAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
47685529 TCGCACGCTGAGGTATTTTC
62 T--CATGCCGAGGTA-TTTC
*
47685549 TTTTAAATCTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTAAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* *
47685614 CGCTGAGGTATCTTC
65 TGCCGAGGTAT-TTC
* ** * *
47685629 AATTTATGTTTCTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGGGCCTCGGG
1 -TTTTA-AATT-TCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
* *
47685694 TCGCACGCTGAGGTATTTC
62 T--CATGCCGAGGTATTTC
* *
47685713 TTTTTAATTTCTGTTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGTCA
1 TTTTAAATTTCTG-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
*
47685778 TGCTGAGGTATCTTC
65 TGCCGAGGTAT-TTC
* ** * * *
47685793 AATTTATGTTTCTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGGGCATCGG
1 -TTTTA-AATT-TCTGTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* **
47685858 GTCGCACGCTAAGGTATTTC
61 GT--CATGCCGAGGTATTTC
* * *
47685878 TTTTTAATTTCTGTTTTTTCAAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTAAATTTCTG-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
*
47685942 TGCCGATGTATTTC
65 TGCCGAGGTATTTC
* * *
47685956 TTTTAAATTTTTGTTTTTC-AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCAT
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
47686019 GCCGAGGTATTTC
66 GCCGAGGTATTTC
* **
47686032 TTTTAAATTTCTGTTTTTC-AAAAATCAACTCATAAT-ATAGAGGTGAGTTGAGCCTCGGGTCAT
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
*
47686095 ACCGAGGTATTTC
66 GCCGAGGTATTTC
** * * *
47686108 TTTTAAATTTCCATTTTTC-AAAAATCAATTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCAT
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
47686171 GCCGAGGTATTTC
66 GCCGAGGTATTTC
* * *
47686184 TTTTAAATTTCCGTTTTTC-AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCAT
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
47686247 GCCGAGGTATTTC
66 GCCGAGGTATTTC
* * *
47686260 TTTTAAATTTCTGTTTTTC-AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCCGGTCAT
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
47686323 GCCGAGGTATTTC
66 GCCGAGGTATTTC
* * ** *
47686336 TTTTAAATTTCCGTTTTTC-AAAAATCAACTCATAAT-ATAGAGGTGAGTTGAGCCTCCGGTCAT
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
47686399 GCCGAGGTATTTC
66 GCCGAGGTATTTC
* *
47686412 TTTTAAATTT-TCGTTTTTC-AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCA
1 TTTTAAATTTCT-GTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
*
47686474 TGCCGATGTATTTC
65 TGCCGAGGTATTTC
* * **
47686488 TTTTAAATTTCTGTTTTTC-AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGACCAT
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
47686551 GCCGAGGTATTTC
66 GCCGAGGTATTTC
* ** *
47686564 TTTTAAATTTATGTTTTTTGAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGG-TC
*
47686629 ATGTCGAGGTA----
64 ATGCCGAGGTATTTC
** * * * * * *
47686640 TTTTCGATTTTTGTTTTTC-GAAGATCAACTCATAATCCGAGAGGTGAGTTGAGTCTCGGGTC
1 TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
47686702 GCACGCCGAG
Statistics
Matches: 1394, Mismatches: 121, Indels: 98
0.86 0.08 0.06
Matches are distributed among these distances:
73 1 0.00
74 8 0.01
75 82 0.06
76 592 0.42
77 34 0.02
78 41 0.03
79 28 0.02
80 68 0.05
81 127 0.09
82 138 0.10
83 170 0.12
84 48 0.03
85 46 0.03
86 11 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (78 bp):
TTTTAAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT
GCCGAGGTATTTC
Found at i:47686733 original size:75 final size:75
Alignment explanation
Indices: 47686588--47686733 Score: 175
Period size: 75 Copynumber: 1.9 Consensus size: 75
47686578 TTTTTGAAAA
* * * * * * * *
47686588 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACATGTCGAGGTATTTTCGATTTTTG
1 ATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGGCACACGCCGAGCTATTCTCGATTTCTA
*
47686653 TTTTTCGAAG
66 CTTTTCGAAG
* * * *
47686663 ATCAACTCATAATCCGAGAGGTGAGTTGAGTCTCGGGTCGCACGCCGAGCTGTTCTCGATTTCTA
1 ATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGGCACACGCCGAGCTATTCTCGATTTCTA
47686728 CTTTTC
66 CTTTTC
47686734 AAATAAATAG
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
75 58 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (75 bp):
ATCAACTCATAATCCGAGAGGTGAGTTGAGCCTCGGGGCACACGCCGAGCTATTCTCGATTTCTA
CTTTTCGAAG
Found at i:47687092 original size:30 final size:29
Alignment explanation
Indices: 47687024--47687144 Score: 75
Period size: 30 Copynumber: 4.0 Consensus size: 29
47687014 AAAATAAAGA
* ** *
47687024 TTACATTTTAACCCCTGTACTTTTTGAAAT
1 TTACATTTTGACCCC-AAACTTTTTAAAAT
**
47687054 TTTTATTTTGACCCCAAACCTTTTTAAAAT
1 TTACATTTTGACCCCAAA-CTTTTTAAAAT
* *
47687084 TTACATTTT-AGCCCTAAAATTTTCTAAAA-
1 TTACATTTTGA-CCCCAAACTTTT-TAAAAT
* * *
47687113 TTACATTTCGACCCTTAAATTTTCTTAAAAT
1 TTACATTTTGACCC-CAAACTTT-TTAAAAT
47687144 T
1 T
47687145 GCACTTTAAC
Statistics
Matches: 72, Mismatches: 12, Indels: 13
0.74 0.12 0.13
Matches are distributed among these distances:
29 17 0.24
30 53 0.74
31 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.04, T:0.45
Consensus pattern (29 bp):
TTACATTTTGACCCCAAACTTTTTAAAAT
Found at i:47687117 original size:29 final size:29
Alignment explanation
Indices: 47687074--47687161 Score: 83
Period size: 29 Copynumber: 3.0 Consensus size: 29
47687064 ACCCCAAACC
47687074 TTTT-TAAAATTTACATTTTAG-CCCTAAAA
1 TTTTCTAAAA-TTACA-TTTAGACCCTAAAA
* *
47687103 TTTTCTAAAATTACATTTCGACCCTTAAA
1 TTTTCTAAAATTACATTTAGACCCTAAAA
*
47687132 TTTTCTTAAAATTGCACTTTA-ACTCCTAAA
1 TTTTC-TAAAATTACA-TTTAGAC-CCTAAA
47687162 CTCTCAGGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
28 4 0.08
29 21 0.43
30 16 0.33
31 8 0.16
ACGTcount: A:0.35, C:0.18, G:0.03, T:0.43
Consensus pattern (29 bp):
TTTTCTAAAATTACATTTAGACCCTAAAA
Found at i:47687713 original size:6 final size:6
Alignment explanation
Indices: 47687706--47687768 Score: 56
Period size: 6 Copynumber: 10.0 Consensus size: 6
47687696 CGGCCCGAAG
* *
47687706 AAGAAG AAGAAA AAGAAA AAGAAA GAAGGAAA AAGAGAA GAA-AAA GAGAAA
1 AAGAAA AAGAAA AAGAAA AAGAAA -AA-GAAA AAGA-AA -AAGAAA AAGAAA
*
47687757 AAAAAA AAGAAA
1 AAGAAA AAGAAA
47687769 TATATCACAG
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
5 1 0.02
6 33 0.70
7 7 0.15
8 6 0.13
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:47687727 original size:12 final size:13
Alignment explanation
Indices: 47687703--47687768 Score: 66
Period size: 14 Copynumber: 5.2 Consensus size: 13
47687693 GTACGGCCCG
*
47687703 AAGAAGAAGAAGA
1 AAGAAGAAAAAGA
47687716 AA-AAGAAAAAGA
1 AAGAAGAAAAAGA
47687728 AAGAAGGAAAAAG-
1 AAGAA-GAAAAAGA
47687741 -AGAAGAAAAAGA
1 AAGAAGAAAAAGA
* *
47687753 GAAAAAAAAAAAGA
1 -AAGAAGAAAAAGA
47687767 AA
1 AA
47687769 TATATCACAG
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
11 7 0.16
12 15 0.33
13 6 0.13
14 17 0.38
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
AAGAAGAAAAAGA
Found at i:47687763 original size:25 final size:25
Alignment explanation
Indices: 47687718--47687766 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
47687708 GAAGAAGAAA
**
47687718 AAGAAAAAGAAAGAAGGAAAAAGAG
1 AAGAAAAAGAAAGAAAAAAAAAGAG
47687743 AAGAAAAAGAGAA-AAAAAAAAAGA
1 AAGAAAAAGA-AAGAAAAAAAAAGA
47687767 AATATATCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (25 bp):
AAGAAAAAGAAAGAAAAAAAAAGAG
Found at i:47687899 original size:23 final size:24
Alignment explanation
Indices: 47687868--47687939 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 24
47687858 AAAAAAAACC
*
47687868 AAAACAGAAA-AAAGAAGCAGCAG
1 AAAAAAGAAAGAAAGAAGCAGCAG
*
47687891 AAAAAAGAAAGAAAGAAAGAAGCAG
1 AAAAAAGAAAGAAAG-AAGCAGCAG
47687916 AAAAAAGAAGAAGAAAGAAGCAGC
1 AAAAAAG-A-AAGAAAGAAGCAGC
47687940 CCAAATGTAG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
23 9 0.21
24 4 0.10
25 15 0.36
26 7 0.17
27 7 0.17
ACGTcount: A:0.68, C:0.08, G:0.24, T:0.00
Consensus pattern (24 bp):
AAAAAAGAAAGAAAGAAGCAGCAG
Found at i:47687926 original size:28 final size:27
Alignment explanation
Indices: 47687873--47687934 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
47687863 AAACCAAAAC
*
47687873 AGAAA-AAAGAAGCAGCAGAAAAAAGAA
1 AGAAAGAAAGAAGCAGCAAAAAAAAG-A
47687900 AGAAAGAAAGAAGCAG-AAAAAAGAAGA
1 AGAAAGAAAGAAGCAGCAAAAAA-AAGA
47687927 AGAAAGAA
1 AGAAAGAA
47687935 GCAGCCCAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 19 0.59
28 13 0.41
ACGTcount: A:0.71, C:0.05, G:0.24, T:0.00
Consensus pattern (27 bp):
AGAAAGAAAGAAGCAGCAAAAAAAAGA
Found at i:47687986 original size:34 final size:33
Alignment explanation
Indices: 47687948--47688011 Score: 101
Period size: 34 Copynumber: 1.9 Consensus size: 33
47687938 GCCCAAATGT
*
47687948 AGGCCCAGCGCAGCAGCAGGCCCAGCAGGCCCCC
1 AGGCCCAGCGCAGCAGCA-GCCCAACAGGCCCCC
*
47687982 AGGCCCAGTGCAGCAGCAGCCCAACAGGCC
1 AGGCCCAGCGCAGCAGCAGCCCAACAGGCC
47688012 AGCCCAGTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 11 0.39
34 17 0.61
ACGTcount: A:0.23, C:0.44, G:0.31, T:0.02
Consensus pattern (33 bp):
AGGCCCAGCGCAGCAGCAGCCCAACAGGCCCCC
Found at i:47688037 original size:10 final size:10
Alignment explanation
Indices: 47688024--47688082 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
47688014 CCCAGTCCAG
47688024 AAAAAAAAGAA
1 AAAAAAAAG-A
47688035 AAAAAAAAGA
1 AAAAAAAAGA
*
47688045 GAGGAAAAAAGA
1 -A-AAAAAAAGA
* *
47688057 AGATAAAAGA
1 AAAAAAAAGA
*
47688067 AGAAAAAAGA
1 AAAAAAAAGA
47688077 AAAAAA
1 AAAAAA
47688083 TGGTTTTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
10 23 0.55
11 11 0.26
12 8 0.19
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:47688258 original size:11 final size:11
Alignment explanation
Indices: 47688242--47688279 Score: 53
Period size: 10 Copynumber: 3.6 Consensus size: 11
47688232 GTATTTATAT
47688242 TTTTAATTTAA
1 TTTTAATTTAA
47688253 TTTTAATTT-A
1 TTTTAATTTAA
*
47688263 TTTTAA-ATAA
1 TTTTAATTTAA
47688273 TTTTAAT
1 TTTTAAT
47688280 AAATAAGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
9 1 0.04
10 14 0.58
11 9 0.38
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TTTTAATTTAA
Found at i:47688573 original size:18 final size:18
Alignment explanation
Indices: 47688548--47688823 Score: 143
Period size: 17 Copynumber: 15.5 Consensus size: 18
47688538 AAAAATCAGG
*
47688548 TTTCAAAAATTGTCGTGT
1 TTTCAAAAATTCTCGTGT
* *
47688566 TTT-AAAAATTTTCATG-
1 TTTCAAAAATTCTCGTGT
*
47688582 TTTCTAAAATGT-T--TGT
1 TTTCAAAAAT-TCTCGTGT
*
47688598 ATTTCAAAAAATCCTCGTGT
1 -TTTC-AAAAATTCTCGTGT
*
47688618 TTTCAAAAATTCTCATG-
1 TTTCAAAAATTCTCGTGT
*
47688635 TCTCAAAAA-TCTTCGTGT
1 TTTCAAAAATTC-TCGTGT
*
47688653 TTTC-AAAATTCTAGTG-
1 TTTCAAAAATTCTCGTGT
* *
47688669 TTTCAAAAATTTTCATGT
1 TTTCAAAAATTCTCGTGT
* *
47688687 TTTCAAAAATTTCCCCTGT
1 TTTCAAAAA-TTCTCGTGT
*
47688706 TTTCAAAAATTCTCGTAT
1 TTTCAAAAATTCTCGTGT
* * * *
47688724 TTT-GAAAATTTTCTTAT
1 TTTCAAAAATTCTCGTGT
*
47688741 TTTCAAAAAAAAAAAT-TCGTGT
1 TTTC-----AAAAATTCTCGTGT
*
47688763 TTT-ATAAA-TCTCCGTGT
1 TTTCAAAAATTCT-CGTGT
*
47688780 TTTCAAAAACTTCTCGT-C
1 TTTCAAAAA-TTCTCGTGT
47688798 TTTCAAAAATT-TCCGTG-
1 TTTCAAAAATTCT-CGTGT
47688815 TTTCAAAAA
1 TTTCAAAAA
47688824 AAAAATCCTC
Statistics
Matches: 201, Mismatches: 30, Indels: 55
0.70 0.10 0.19
Matches are distributed among these distances:
15 3 0.01
16 15 0.07
17 86 0.43
18 57 0.28
19 22 0.11
20 6 0.03
22 7 0.03
23 5 0.02
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (18 bp):
TTTCAAAAATTCTCGTGT
Found at i:47688750 original size:19 final size:18
Alignment explanation
Indices: 47688669--47688749 Score: 74
Period size: 18 Copynumber: 4.5 Consensus size: 18
47688659 AATTCTAGTG
*
47688669 TTTCAAAAATTTTCATGT
1 TTTCAAAAATTTTCATAT
* * *
47688687 TTTCAAAAATTTCCCCTGT
1 TTTCAAAAATTT-TCATAT
* *
47688706 TTTCAAAAATTCTCGTAT
1 TTTCAAAAATTTTCATAT
* *
47688724 TTT-GAAAATTTTCTTAT
1 TTTCAAAAATTTTCATAT
47688741 TTTCAAAAA
1 TTTCAAAAA
47688750 AAAAAATTCG
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
17 14 0.27
18 22 0.43
19 15 0.29
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.47
Consensus pattern (18 bp):
TTTCAAAAATTTTCATAT
Found at i:47688836 original size:75 final size:74
Alignment explanation
Indices: 47688703--47688844 Score: 180
Period size: 75 Copynumber: 1.9 Consensus size: 74
47688693 AAATTTCCCC
** * * * *
47688703 TGTTTTCAAAAATTCTCGTATTTTGAAAATTTTCTTATTTTCAAAAAAAAAAATTCGTGTTTTAT
1 TGTTTTCAAAAATTCTCGTATTTCAAAAATTTCCGTAGTTTCAAAAAAAAAAATTCGTGTTTCAT
47688768 AAATCTCCG
66 AAATCTCCG
*
47688777 TGTTTTCAAAAACTTCTCGTCTTTCAAAAATTTCCGT-GTTTC-AAAAAAAAAATCCTCGTGTTT
1 TGTTTTCAAAAA-TTCTCGTATTTCAAAAATTTCCGTAGTTTCAAAAAAAAAAAT--TCGTGTTT
47688840 CATAA
63 CATAA
47688845 TTTATCAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
73 11 0.19
74 16 0.28
75 31 0.53
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (74 bp):
TGTTTTCAAAAATTCTCGTATTTCAAAAATTTCCGTAGTTTCAAAAAAAAAAATTCGTGTTTCAT
AAATCTCCG
Found at i:47688894 original size:22 final size:22
Alignment explanation
Indices: 47688851--47688892 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
47688841 ATAATTTATC
*
47688851 AAAATTTTTGTGTTTTCAAAAT
1 AAAATTTTTGTGTTTTAAAAAT
47688873 AAAA-TTTTGTGTTTTAAAAA
1 AAAATTTTTGTGTTTTAAAAA
47688893 ATTCTCATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (22 bp):
AAAATTTTTGTGTTTTAAAAAT
Found at i:47689007 original size:18 final size:17
Alignment explanation
Indices: 47688954--47689008 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 17
47688944 AATTTTATGT
47688954 TTTCGTGTTTTCAAAAAAA
1 TTTCGTGTTTTC--AAAAA
47688973 TTTCGTG-TTTCAAAAA
1 TTTCGTGTTTTCAAAAA
47688989 TCTTCGTGTTTTCAAAAA
1 T-TTCGTGTTTTCAAAAA
47689007 TT
1 TT
47689009 ATTATTTTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 6 0.18
17 7 0.21
18 14 0.41
19 7 0.21
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.45
Consensus pattern (17 bp):
TTTCGTGTTTTCAAAAA
Found at i:47690483 original size:14 final size:15
Alignment explanation
Indices: 47690464--47690496 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
47690454 AATTAATAAC
*
47690464 AAAAATAAAGT-ATA
1 AAAAATAAACTGATA
47690478 AAAAATAAACTGATA
1 AAAAATAAACTGATA
47690493 AAAA
1 AAAA
47690497 TAATATAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (15 bp):
AAAAATAAACTGATA
Found at i:47702412 original size:15 final size:15
Alignment explanation
Indices: 47702394--47702450 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
47702384 TTGCCACCTT
*
47702394 CACCACCTCCGCCTC
1 CACCACCTCCTCCTC
* *
47702409 CACCTCCATCATCTCCTT
1 CACCACC-TC--CTCCTC
47702427 CACCACCTCCTCCTC
1 CACCACCTCCTCCTC
47702442 CACCACCTC
1 CACCACCTC
47702451 TACCAACACT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
15 20 0.59
16 2 0.06
17 2 0.06
18 10 0.29
ACGTcount: A:0.16, C:0.61, G:0.02, T:0.21
Consensus pattern (15 bp):
CACCACCTCCTCCTC
Found at i:47702412 original size:33 final size:33
Alignment explanation
Indices: 47702366--47702449 Score: 87
Period size: 33 Copynumber: 2.5 Consensus size: 33
47702356 CCCAGATTCT
* **
47702366 CCTCCACCACCACCACCTTTGCCACCTTCACCA
1 CCTCCACCTCCACCACCTTCACCACCTTCACCA
* * * * *
47702399 CCTCCGCCTCCACCTCCATCATCTCCTTCACCA
1 CCTCCACCTCCACCACCTTCACCACCTTCACCA
*
47702432 CCTCCTCCTCCACCACCT
1 CCTCCACCTCCACCACCT
47702450 CTACCAACAC
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.17, C:0.60, G:0.02, T:0.21
Consensus pattern (33 bp):
CCTCCACCTCCACCACCTTCACCACCTTCACCA
Found at i:47706686 original size:15 final size:15
Alignment explanation
Indices: 47706666--47706698 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
47706656 ATATAGAAAC
47706666 TCTAATGAATAAATA
1 TCTAATGAATAAATA
47706681 TCTAATGAATAAATA
1 TCTAATGAATAAATA
47706696 TCT
1 TCT
47706699 CTCAGTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.36
Consensus pattern (15 bp):
TCTAATGAATAAATA
Found at i:47716323 original size:20 final size:21
Alignment explanation
Indices: 47716272--47716325 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 21
47716262 TCTATTGATT
*
47716272 TTTTTAATATTATTAAATAATA
1 TTTTTAATA-TATCAAATAATA
47716294 TTTATTAATATATCAAATAA-A
1 TTT-TTAATATATCAAATAATA
47716315 TTTTTAATATA
1 TTTTTAATATA
47716326 ACTTTATTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 8 0.27
21 4 0.13
22 12 0.40
23 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (21 bp):
TTTTTAATATATCAAATAATA
Found at i:47724386 original size:31 final size:32
Alignment explanation
Indices: 47724351--47724410 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
47724341 TAATTAAATT
47724351 ATATTTAATT-AATTCAACTCAAAATTTACAA
1 ATATTTAATTAAATTCAACTCAAAATTTACAA
* * *
47724382 ATATTTACTTAAATTCGATTCAAAATTTA
1 ATATTTAATTAAATTCAACTCAAAATTTA
47724411 ATGAAGTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 9 0.36
32 16 0.64
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.42
Consensus pattern (32 bp):
ATATTTAATTAAATTCAACTCAAAATTTACAA
Found at i:47726185 original size:20 final size:21
Alignment explanation
Indices: 47726143--47726188 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
47726133 ATAACAGCTT
* *
47726143 TTAAAATAATTATCTTTTAAA
1 TTAAAAAAATTATCTTATAAA
47726164 TTAAAAAAATTATC-TATAAA
1 TTAAAAAAATTATCTTATAAA
47726184 TTAAA
1 TTAAA
47726189 TTCTAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.43
21 13 0.57
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (21 bp):
TTAAAAAAATTATCTTATAAA
Found at i:47744454 original size:10 final size:9
Alignment explanation
Indices: 47744438--47744511 Score: 69
Period size: 10 Copynumber: 7.7 Consensus size: 9
47744428 AATTATACAA
47744438 ATAAAAATT
1 ATAAAAATT
47744447 ACTAAAAATT
1 A-TAAAAATT
47744457 ATAAAAATT
1 ATAAAAATT
**
47744466 ATTAAATTTT
1 A-TAAAAATT
47744476 AATAAAAATT
1 -ATAAAAATT
47744486 ATAAAAATCGT
1 ATAAAAAT--T
47744497 A-AAAAATTT
1 ATAAAAA-TT
47744506 ATAAAA
1 ATAAAA
47744512 CATAATATAG
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
9 20 0.37
10 30 0.56
11 4 0.07
ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34
Consensus pattern (9 bp):
ATAAAAATT
Found at i:47744509 original size:29 final size:29
Alignment explanation
Indices: 47744440--47744599 Score: 84
Period size: 29 Copynumber: 5.7 Consensus size: 29
47744430 TTATACAAAT
47744440 AAAAA-TTACTAAAAATTATAAAAAT--TA
1 AAAAATTTA-TAAAAATTATAAAAATCGTA
* *
47744467 TTAAATTTTAATAAAAATTATAAAAATCGTA
1 -AAAAATTT-ATAAAAATTATAAAAATCGTA
* * *
47744498 AAAAATTTAT-AAAA-CAT-AATATAG-A
1 AAAAATTTATAAAAATTATAAAAATCGTA
* * * * * *
47744523 AAAAAATTAT-AAACTTTTATAAAGTTGGA
1 AAAAATTTATAAAAATTATA-AAAATCGTA
* * * *
47744552 AGAAAGTTATAAAAAATATAAAATTCGTA
1 AAAAATTTATAAAAATTATAAAAATCGTA
*
47744581 AAAGATTTATAAAAATTAT
1 AAAAATTTATAAAAATTAT
47744600 CGTATCAAAA
Statistics
Matches: 97, Mismatches: 26, Indels: 17
0.69 0.19 0.12
Matches are distributed among these distances:
25 13 0.13
26 6 0.06
27 2 0.02
28 11 0.11
29 50 0.52
30 13 0.13
31 2 0.02
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.33
Consensus pattern (29 bp):
AAAAATTTATAAAAATTATAAAAATCGTA
Found at i:47744518 original size:39 final size:39
Alignment explanation
Indices: 47744437--47744518 Score: 89
Period size: 39 Copynumber: 2.1 Consensus size: 39
47744427 AAATTATACA
***
47744437 AATAAAAATTACTAAAAATTATAAAAATTATTAAATTTT
1 AATAAAAATTACTAAAAATTATAAAAATTATTAAAACAT
47744476 AATAAAAATTA-TAAAAATCGTA-AAAAATT-TATAAAACAT
1 AATAAAAATTACTAAAAAT--TATAAAAATTAT-TAAAACAT
47744515 AATA
1 AATA
47744519 TAGAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
38 8 0.22
39 27 0.73
40 2 0.05
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (39 bp):
AATAAAAATTACTAAAAATTATAAAAATTATTAAAACAT
Found at i:47747465 original size:18 final size:17
Alignment explanation
Indices: 47747439--47747472 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
47747429 TTTTTTTCTC
47747439 TCTTTTCCTTGTCCTTG
1 TCTTTTCCTTGTCCTTG
47747456 TCTTTGTCCTTGTCCTT
1 TCTTT-TCCTTGTCCTT
47747473 CTTCTCCTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.00, C:0.29, G:0.12, T:0.59
Consensus pattern (17 bp):
TCTTTTCCTTGTCCTTG
Found at i:47749648 original size:95 final size:94
Alignment explanation
Indices: 47749462--47749789 Score: 446
Period size: 95 Copynumber: 3.4 Consensus size: 94
47749452 ACGGGCAACC
* * *
47749462 ACTTGGGAAACCTACTG-TTTCCTTATGCCAAGCTACTTCAACAATGCCCCAAATAGAAAGATAA
1 ACTTGGGAAACCTACTGCTTT-CTTATGCCAAG---C-T-AACAATTCCCCGAATAGGAAGAT-A
47749526 TTTCAAGAAATGCTCTTTTGATCAATAATTCTAGCTCAGAA
59 ----AAGAAA-GCTCTTTTGATCAATAATTCTAGCTCAGAA
47749567 ACTTGGGAAACCTACTGCTTTCTTATGCCAAGCTAACAATTCCCCGAATAGGAAGATAAAGAAAC
1 ACTTGGGAAACCTACTGCTTTCTTATGCCAAGCTAACAATTCCCCGAATAGGAAGATAAAGAAA-
47749632 GCTCTTTTGATCAATAATTCTAGCTCAGAA
65 GCTCTTTTGATCAATAATTCTAGCTCAGAA
*
47749662 ACTTGGGAAACCTACTGCTTTCTTATGCCAAGCTAACAATTCCCCGAATAGGAAGATAACG-AAG
1 ACTTGGGAAACCTACTGCTTTCTTATGCCAAGCTAACAATTCCCCGAATAGGAAGATAAAGAAAG
*
47749726 CTCTTTTGATCAATAATTCTCGCTCAGAA
66 CTCTTTTGATCAATAATTCTAGCTCAGAA
* *
47749755 ACTTAGGG-AACCTACTGTTTTCTTATTCCAAGCTA
1 ACTT-GGGAAACCTACTGCTTTCTTATGCCAAGCTA
47749790 CTTCAACAAT
Statistics
Matches: 213, Mismatches: 8, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
93 58 0.27
94 5 0.02
95 96 0.45
99 1 0.00
100 20 0.09
101 1 0.00
102 1 0.00
105 28 0.13
106 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (94 bp):
ACTTGGGAAACCTACTGCTTTCTTATGCCAAGCTAACAATTCCCCGAATAGGAAGATAAAGAAAG
CTCTTTTGATCAATAATTCTAGCTCAGAA
Found at i:47763202 original size:39 final size:39
Alignment explanation
Indices: 47763148--47763227 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
47763138 ATCAAAGACA
* *
47763148 TCCACCTCACGCGTTTCGTAATGATTGTTAAATGATAAG
1 TCCACCTCACACGTTTCGTAATGATTATTAAATGATAAG
* *
47763187 TCCACCTCATACGTTTCGTAATGATTATTAGATGATAAG
1 TCCACCTCACACGTTTCGTAATGATTATTAAATGATAAG
47763226 TC
1 TC
47763228 TAACACGTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (39 bp):
TCCACCTCACACGTTTCGTAATGATTATTAAATGATAAG
Found at i:47775293 original size:15 final size:15
Alignment explanation
Indices: 47775273--47775350 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
47775263 TTTATGGAAA
47775273 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
47775288 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
47775302 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
47775318 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
47775332 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
47775348 ATC
1 ATC
47775351 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 8 0.17
15 31 0.66
16 8 0.17
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:47775301 original size:30 final size:30
Alignment explanation
Indices: 47775267--47775360 Score: 161
Period size: 30 Copynumber: 3.1 Consensus size: 30
47775257 TCCATATTTA
*
47775267 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
47775297 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
47775327 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
47775358 TGG
1 TGG
47775361 CATAATAAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
30 53 0.87
31 8 0.13
ACGTcount: A:0.41, C:0.06, G:0.26, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:47777821 original size:15 final size:15
Alignment explanation
Indices: 47777801--47777878 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
47777791 TTTATGGAAA
47777801 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
47777816 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
47777830 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* * **
47777846 ATCGAATAT-TGGAA
1 ATCAAAGATATGGGT
47777860 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
47777876 ATC
1 ATC
47777879 GAGATATTGG
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
14 8 0.18
15 29 0.64
16 8 0.18
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:47777829 original size:30 final size:30
Alignment explanation
Indices: 47777795--47777888 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
47777785 TCCATATTTA
*
47777795 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
47777825 TGGAAAGTCAAAGATATGGGTATCGAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
47777855 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
47777886 TGG
1 TGG
47777889 CATAATAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
30 52 0.88
31 7 0.12
ACGTcount: A:0.40, C:0.06, G:0.27, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:47780713 original size:18 final size:19
Alignment explanation
Indices: 47780692--47780731 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
47780682 TTATTAAAAA
*
47780692 TTAGAAATA-TAATAAATT
1 TTAGAAAAATTAATAAATT
*
47780710 TTAGAAAAATTATTAAATT
1 TTAGAAAAATTAATAAATT
47780729 TTA
1 TTA
47780732 ATAAAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TTAGAAAAATTAATAAATT
Found at i:47780728 original size:19 final size:19
Alignment explanation
Indices: 47780682--47780731 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 19
47780672 GCCTCTGCTC
** *
47780682 TTATTAAAAATTAGAAATA
1 TTATTAAATTTTAGAAAAA
*
47780701 -TAATAAATTTTAGAAAAA
1 TTATTAAATTTTAGAAAAA
47780719 TTATTAAATTTTA
1 TTATTAAATTTTA
47780732 ATAAAATATA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (19 bp):
TTATTAAATTTTAGAAAAA
Found at i:47780746 original size:19 final size:19
Alignment explanation
Indices: 47780696--47780747 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
47780686 TAAAAATTAG
47780696 AAATATAATAAATTTTAGAA
1 AAATATAA-AAATTTTAGAA
*
47780716 AAAT-TATTAAATTTTA-ATA
1 AAATATA-AAAATTTTAGA-A
47780735 AAATATAAAAATT
1 AAATATAAAAATT
47780748 AAAATTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
18 1 0.04
19 20 0.74
20 6 0.22
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (19 bp):
AAATATAAAAATTTTAGAA
Found at i:47780763 original size:19 final size:19
Alignment explanation
Indices: 47780738--47780784 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
47780728 TTTAATAAAA
47780738 TATAAAAATTAAAATTTAT
1 TATAAAAATTAAAATTTAT
* *
47780757 TA-AAAAA-TAGAATTTTT
1 TATAAAAATTAAAATTTAT
47780774 TAATAAAAATT
1 T-ATAAAAATT
47780785 GTAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 9 0.39
18 6 0.26
19 7 0.30
20 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (19 bp):
TATAAAAATTAAAATTTAT
Found at i:47780916 original size:6 final size:6
Alignment explanation
Indices: 47780905--47780934 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
47780895 GGGAAATTAT
47780905 AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA
47780935 TAAAAGTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:47781048 original size:29 final size:27
Alignment explanation
Indices: 47781015--47781108 Score: 91
Period size: 29 Copynumber: 3.3 Consensus size: 27
47781005 TTACATTTTG
47781015 TATAATTTTCTTACGACTTTATAAAATTT
1 TATAATTTT-TTACGA-TTTATAAAATTT
* * *
47781044 TATAATTTTTTTA-TATTTCTATATATTT
1 TATAA-TTTTTTACGATTTATA-AAATTT
47781072 TATAATTTTTTACGAATTTTATAAAATTT
1 TATAATTTTTTACG-A-TTTATAAAATTT
*
47781101 TACAATTT
1 TATAATTT
47781109 ATATATATAT
Statistics
Matches: 53, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
27 12 0.23
28 11 0.21
29 21 0.40
30 9 0.17
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.57
Consensus pattern (27 bp):
TATAATTTTTTACGATTTATAAAATTT
Found at i:47781090 original size:19 final size:18
Alignment explanation
Indices: 47781068--47781113 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
47781058 ATTTCTATAT
**
47781068 ATTTTATAATTTTTTACGA
1 ATTTTATAAAATTTTAC-A
47781087 ATTTTATAAAATTTTACA
1 ATTTTATAAAATTTTACA
47781105 ATTTATATA
1 ATTT-TATA
47781114 TATATTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTTTATAAAATTTTACA
Found at i:47781095 original size:57 final size:61
Alignment explanation
Indices: 47780993--47781123 Score: 173
Period size: 57 Copynumber: 2.2 Consensus size: 61
47780983 TTTTCATGAA
* *
47780993 ATTTATATTTCTTTACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTATAATTT-T
1 ATTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTACAATTTAT
* *
47781053 -TTTATATTTCTATATA-TTT-TATAATTTT-TTACGAATTTTATAAAATTTTACAATTTAT
1 ATTTATATTTCTATACATTTTGTATAATTTTCTTACG-ACTTTATAAAATTTTACAATTTAT
*
47781111 ATATATATTTCTA
1 ATTTATATTTCTA
47781124 ATTTCTAATT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
56 5 0.08
57 29 0.46
58 4 0.06
59 25 0.40
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (61 bp):
ATTTATATTTCTATACATTTTGTATAATTTTCTTACGACTTTATAAAATTTTACAATTTAT
Found at i:47786642 original size:18 final size:19
Alignment explanation
Indices: 47786609--47786645 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
47786599 GTTCTTTTTT
*
47786609 GTGTTTGGGTGATGGGAAA
1 GTGTCTGGGTGATGGGAAA
47786628 GTGTCTGGG-GATGGGAAA
1 GTGTCTGGGTGATGGGAAA
47786646 ATGATGTGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.22, C:0.03, G:0.49, T:0.27
Consensus pattern (19 bp):
GTGTCTGGGTGATGGGAAA
Found at i:47792170 original size:17 final size:17
Alignment explanation
Indices: 47792142--47792189 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
47792132 TATATTATCT
47792142 TAATTTTT-AATTTTTA
1 TAATTTTTCAATTTTTA
*
47792158 TAATTTTTCAATTTTTG
1 TAATTTTTCAATTTTTA
*
47792175 TGATTTTTCGAATTT
1 TAATTTTTC-AATTT
47792190 CTCTTTCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.29
17 15 0.54
18 5 0.18
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (17 bp):
TAATTTTTCAATTTTTA
Found at i:47796199 original size:17 final size:20
Alignment explanation
Indices: 47796163--47796201 Score: 57
Period size: 17 Copynumber: 2.1 Consensus size: 20
47796153 GTCTAAAGAC
47796163 TTTTCTTTTAATTATATTTG
1 TTTTCTTTTAATTATATTTG
47796183 TTTT-TTTTAA-TAT-TTTG
1 TTTTCTTTTAATTATATTTG
47796200 TT
1 TT
47796202 ATATTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 3 0.16
19 6 0.32
20 4 0.21
ACGTcount: A:0.18, C:0.03, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTTCTTTTAATTATATTTG
Found at i:47801987 original size:17 final size:17
Alignment explanation
Indices: 47801961--47801996 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
47801951 ATTTTTTCAG
* *
47801961 ATTAATTTTTATTTAAA
1 ATTAAATTTTATTAAAA
47801978 ATTAAATTTTATTAAAA
1 ATTAAATTTTATTAAAA
47801995 AT
1 AT
47801997 ATATATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTAAATTTTATTAAAA
Found at i:47802133 original size:38 final size:39
Alignment explanation
Indices: 47802073--47802159 Score: 115
Period size: 38 Copynumber: 2.3 Consensus size: 39
47802063 TTAAAAATAT
* * *
47802073 TTATATTAAAAAACTACCATAAATATTATAAATGTTTTA
1 TTATATTAAAAAACTACAATAAATATAATAAATATTTTA
47802112 TTATATT-AAAAA-TACAAATAAATATAATAAATATTTTA
1 TTATATTAAAAAACTAC-AATAAATATAATAAATATTTTA
*
47802150 TTTTATTAAA
1 TTATATTAAA
47802160 TGAACTTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
37 3 0.07
38 30 0.71
39 9 0.21
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.43
Consensus pattern (39 bp):
TTATATTAAAAAACTACAATAAATATAATAAATATTTTA
Found at i:47802324 original size:29 final size:28
Alignment explanation
Indices: 47802261--47802325 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
47802251 AGTGATTTAA
47802261 TATAA-ATATAAATATATAATTATTATT
1 TATAACATATAAATATATAATTATTATT
*
47802288 TA-ACACATATAATTAATATAA-TATTATTT
1 TATA-ACATATAAAT-ATATAATTATTA-TT
47802317 TATAACATA
1 TATAACATA
47802326 ATATTTAGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
26 1 0.03
27 3 0.09
28 12 0.38
29 15 0.47
30 1 0.03
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.45
Consensus pattern (28 bp):
TATAACATATAAATATATAATTATTATT
Found at i:47802725 original size:14 final size:14
Alignment explanation
Indices: 47802706--47802734 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47802696 TTAACAATAA
47802706 AACAACAAAATAGT
1 AACAACAAAATAGT
47802720 AACAACAAAATAGT
1 AACAACAAAATAGT
47802734 A
1 A
47802735 GTAATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.14, G:0.07, T:0.14
Consensus pattern (14 bp):
AACAACAAAATAGT
Found at i:47802792 original size:22 final size:22
Alignment explanation
Indices: 47802767--47802811 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
47802757 ACAAAATAAC
*
47802767 AACATAACAACAACATAACAAT
1 AACAAAACAACAACATAACAAT
47802789 AACAAAACAACAACATAACAAT
1 AACAAAACAACAACATAACAAT
47802811 A
1 A
47802812 GTAAACAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.67, C:0.22, G:0.00, T:0.11
Consensus pattern (22 bp):
AACAAAACAACAACATAACAAT
Found at i:47805798 original size:47 final size:47
Alignment explanation
Indices: 47805740--47805995 Score: 404
Period size: 47 Copynumber: 5.4 Consensus size: 47
47805730 CAGCCAAGAC
*
47805740 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
47805787 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
47805834 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
47805883 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
47805930 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
47805977 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
47805996 TCCCGAAGGG
Statistics
Matches: 195, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
47 148 0.76
49 47 0.24
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:47805851 original size:96 final size:94
Alignment explanation
Indices: 47805740--47805995 Score: 404
Period size: 96 Copynumber: 2.7 Consensus size: 94
47805730 CAGCCAAGAC
*
47805740 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
47805805 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
47805834 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
47805899 AAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * * *
47805930 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
47805995 G
66 G
47805996 TCCCGAAGGG
Statistics
Matches: 150, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
94 57 0.38
96 93 0.62
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:47806168 original size:37 final size:37
Alignment explanation
Indices: 47806112--47806190 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
47806102 TCGAGCTCTA
* *
47806112 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
47806149 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
47806186 AAGAC
1 AAGAC
47806191 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:47810972 original size:21 final size:21
Alignment explanation
Indices: 47810946--47810986 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
47810936 AGACGAGCAA
* *
47810946 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
47810967 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
47810987 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:47819243 original size:25 final size:24
Alignment explanation
Indices: 47819207--47819255 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
47819197 TTAAAAATAA
47819207 AAATGAACATGT-GAATTAAGTGTT
1 AAATGAACATGTAG-ATTAAGTGTT
*
47819231 AAATGATATATGTAGATTAAGTGTT
1 AAATGA-ACATGTAGATTAAGTGTT
47819256 TATGTTATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 15 0.68
26 1 0.05
ACGTcount: A:0.41, C:0.02, G:0.20, T:0.37
Consensus pattern (24 bp):
AAATGAACATGTAGATTAAGTGTT
Found at i:47819696 original size:15 final size:15
Alignment explanation
Indices: 47819678--47819709 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
47819668 TAACCTGTTT
47819678 AATTCGAATCGAGTA
1 AATTCGAATCGAGTA
47819693 AATTCGAATCGAGTA
1 AATTCGAATCGAGTA
47819708 AA
1 AA
47819710 ATATCTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (15 bp):
AATTCGAATCGAGTA
Found at i:47821990 original size:15 final size:15
Alignment explanation
Indices: 47821962--47822003 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
47821952 ATATATGCAT
* *
47821962 ACATACACATATATA
1 ACATACATACATATA
*
47821977 ATATACATACATATA
1 ACATACATACATATA
47821992 ACATACATACAT
1 ACATACATACAT
47822004 TTTTTATGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (15 bp):
ACATACATACATATA
Found at i:47827446 original size:6 final size:6
Alignment explanation
Indices: 47827437--47827481 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
47827427 AGGAGGAGGT
*
47827437 GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GGTGGC GGT
1 GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GGTGAC GGT
47827482 TCGGTATTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.13, C:0.16, G:0.53, T:0.18
Consensus pattern (6 bp):
GGTGAC
Found at i:47829633 original size:24 final size:24
Alignment explanation
Indices: 47829589--47829634 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
47829579 TTTTTATTTT
*
47829589 TTTTAATTCTTGTTTTTTTTTTCA
1 TTTTAATTCTTGTTTTATTTTTCA
47829613 TTTTAATT-TTGTTTCTATTTTT
1 TTTTAATTCTTGTTT-TATTTTT
47829635 AATATTTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.13, C:0.07, G:0.04, T:0.76
Consensus pattern (24 bp):
TTTTAATTCTTGTTTTATTTTTCA
Found at i:47830404 original size:15 final size:13
Alignment explanation
Indices: 47830363--47830420 Score: 55
Period size: 13 Copynumber: 4.2 Consensus size: 13
47830353 ATGTGTTAAA
*
47830363 ATATATATATTAA
1 ATATATATATTAT
47830376 AT-TATTATTATTAT
1 ATATA-TA-TATTAT
47830390 AGTATAATATATTAT
1 A-TAT-ATATATTAT
*
47830405 ATATTTATATTAT
1 ATATATATATTAT
47830418 ATA
1 ATA
47830421 AATAAGTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 2 0.05
13 15 0.39
14 9 0.24
15 8 0.21
16 3 0.08
17 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
ATATATATATTAT
Found at i:47831772 original size:18 final size:19
Alignment explanation
Indices: 47831751--47831789 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
47831741 ATATATAGAT
47831751 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
47831769 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
47831788 AT
1 AT
47831790 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:47832306 original size:18 final size:19
Alignment explanation
Indices: 47832285--47832325 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
47832275 AATGAAATGA
47832285 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
47832303 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
47832322 GAAA
1 GAAA
47832326 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:47836843 original size:5 final size:5
Alignment explanation
Indices: 47836817--47836874 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
47836807 ATGTGTTAAA
* *
47836817 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATTAT ATATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATA-T-T ATATT
47836866 ATATT ATAT
1 ATATT ATAT
47836875 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 31 0.69
6 10 0.22
7 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:47836853 original size:10 final size:9
Alignment explanation
Indices: 47836818--47836875 Score: 61
Period size: 8 Copynumber: 6.7 Consensus size: 9
47836808 TGTGTTAAAA
47836818 TATATATAT
1 TATATATAT
*
47836827 TAAAT-TAT
1 TATATATAT
47836835 TAT-TATAT
1 TATATATAT
47836843 TATAGTATAT
1 TATA-TATAT
47836853 TATAT-TA-
1 TATATATAT
47836860 TATATTATAT
1 TATA-TATAT
47836870 TATATA
1 TATATA
47836876 AATAAGTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.34
9 9 0.22
10 13 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TATATATAT
Found at i:47836865 original size:12 final size:12
Alignment explanation
Indices: 47836820--47836875 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
47836810 TGTTAAAATA
*
47836820 TATATATTAAAT
1 TATATATTATAT
47836832 TAT-TATTATATT
1 TATATATTATA-T
47836844 ATAGTATATTATAT
1 -TA-TATATTATAT
47836858 TATATATTATAT
1 TATATATTATAT
47836870 TATATA
1 TATATA
47836876 AATAAGTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 6 0.15
12 20 0.51
13 4 0.10
14 2 0.05
15 7 0.18
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (12 bp):
TATATATTATAT
Found at i:47838213 original size:18 final size:19
Alignment explanation
Indices: 47838190--47838228 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
47838180 ATATATAGAT
47838190 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
47838208 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
47838227 AT
1 AT
47838229 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:47838745 original size:18 final size:19
Alignment explanation
Indices: 47838724--47838764 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
47838714 AATGAAATGA
47838724 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
47838742 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
47838761 GAAA
1 GAAA
47838765 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:47839837 original size:32 final size:32
Alignment explanation
Indices: 47839801--47839864 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
47839791 GAGAAAGTTA
*
47839801 ATTGGATACATATAAAATTACTTGCTAAATTT
1 ATTGGATACATATAAAATTACTTCCTAAATTT
* *
47839833 ATTGGTTACGTATAAAATTACTTCCTAAATTT
1 ATTGGATACATATAAAATTACTTCCTAAATTT
47839865 TACTGAAAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (32 bp):
ATTGGATACATATAAAATTACTTCCTAAATTT
Found at i:47840534 original size:20 final size:20
Alignment explanation
Indices: 47840511--47840548 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47840501 GGTCTTTGGT
* *
47840511 GGCCTTTGTCTATACTTGAG
1 GGCCTTTGCCTAGACTTGAG
47840531 GGCCTTTGCCTAGACTTG
1 GGCCTTTGCCTAGACTTG
47840549 GGTGGTCTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.24, G:0.26, T:0.37
Consensus pattern (20 bp):
GGCCTTTGCCTAGACTTGAG
Found at i:47849918 original size:19 final size:18
Alignment explanation
Indices: 47849871--47849919 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
47849861 TTTATGTGGG
*
47849871 TTTTTTTTCTAGTTCTTC
1 TTTTTTTTCTAGTTCTTA
**
47849889 TTTTGGCTTCTAGTTTCTTA
1 TTTT-TTTTCTAG-TTCTTA
47849909 TTTTTTTTCTA
1 TTTTTTTTCTA
47849920 TTTTTATAGA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
18 4 0.17
19 11 0.46
20 9 0.38
ACGTcount: A:0.08, C:0.14, G:0.08, T:0.69
Consensus pattern (18 bp):
TTTTTTTTCTAGTTCTTA
Found at i:47855327 original size:33 final size:33
Alignment explanation
Indices: 47855263--47855331 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
47855253 CTTGAACTCC
* *
47855263 AAACCCAAAACTTAAATCTTGAACTTGAACCCT
1 AAACCCAAAACTTAAATCTCGAACTTAAACCCT
* *
47855296 AAACCCAAACCTTGAA-CTCGAATCTTAAACCCT
1 AAACCCAAAACTTAAATCTCGAA-CTTAAACCCT
47855329 AAA
1 AAA
47855332 TTTGGATTCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 5 0.16
33 26 0.84
ACGTcount: A:0.43, C:0.29, G:0.06, T:0.22
Consensus pattern (33 bp):
AAACCCAAAACTTAAATCTCGAACTTAAACCCT
Found at i:47856508 original size:29 final size:28
Alignment explanation
Indices: 47856475--47856538 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 28
47856465 TAGAGATTGG
*
47856475 ATCAAATTAATCCCTCTATTATTAAATAA
1 ATCAAATTAATCACTCTATTATTAAA-AA
* * *
47856504 ATCAATTTAATCATTGTATTATTAAAAA
1 ATCAAATTAATCACTCTATTATTAAAAA
47856532 ATCAAAT
1 ATCAAAT
47856539 AAGTTGAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (28 bp):
ATCAAATTAATCACTCTATTATTAAAAA
Found at i:47859061 original size:22 final size:23
Alignment explanation
Indices: 47859008--47859063 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
47858998 CCCGTTTTTA
* * *
47859008 ATTAAAATTAAAATTAGTTTTTT
1 ATTAAAATTAAAACTAGATTGTT
*
47859031 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTAGATTGTT
47859053 ATTAAAATTAA
1 ATTAAAATTAA
47859064 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (23 bp):
ATTAAAATTAAAACTAGATTGTT
Found at i:47859076 original size:16 final size:16
Alignment explanation
Indices: 47859039--47859078 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
47859029 TTAATAAAAT
* *
47859039 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
47859055 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
47859071 TAAAATTA
1 TAAAATTA
47859079 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:47859187 original size:68 final size:67
Alignment explanation
Indices: 47859067--47859276 Score: 377
Period size: 68 Copynumber: 3.1 Consensus size: 67
47859057 AAATTAATTG
*
47859067 TTAGTAAAATTATCAAATTATTAATTG-TTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
1 TTAGTAAATTTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
47859131 GA
66 GA
47859133 TTAGTAAATTTATCAAATTATTAATTGCATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTG-ATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
47859198 TGA
65 TGA
*
47859201 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTG-ATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
47859266 TGA
65 TGA
47859269 TTAGTAAA
1 TTAGTAAA
47859277 ATAAACTTGA
Statistics
Matches: 139, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
66 26 0.19
68 113 0.81
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.45
Consensus pattern (67 bp):
TTAGTAAATTTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
GA
Found at i:47859231 original size:9 final size:9
Alignment explanation
Indices: 47859219--47859246 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
47859209 TTTATCAAAT
47859219 TATTAATTG
1 TATTAATTG
47859228 TATTAATTG
1 TATTAATTG
47859237 TATTAATTG
1 TATTAATTG
47859246 T
1 T
47859247 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Done.