Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 164 of 172
Found at i:48282861 original size:99 final size:103
Alignment explanation
Indices: 48282683--48282930 Score: 353
Period size: 99 Copynumber: 2.4 Consensus size: 103
48282673 TGATAATAAC
**
48282683 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCATGCCATGT
* *
48282748 CCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
48282784 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCATGCCATGT
48282847 CCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 CCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
48282888 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
48282931 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
98 1 0.01
99 49 0.37
100 36 0.27
102 3 0.02
103 1 0.01
104 2 0.02
105 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (103 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCATGCCATGTC
CCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:48282863 original size:49 final size:50
Alignment explanation
Indices: 48282684--48282930 Score: 302
Period size: 50 Copynumber: 4.8 Consensus size: 50
48282674 GATAATAACA
* ** *
48282684 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGT-CTCGG
* * *
48282735 TGCC-ATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
*
48282784 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
* *
48282834 TGCC-ATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TC-T-CGG
*
48282888 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
48282931 TTACCCAAAT
Statistics
Matches: 171, Mismatches: 16, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
48 1 0.01
49 47 0.27
50 74 0.43
51 5 0.03
52 2 0.01
53 1 0.01
54 2 0.01
55 4 0.02
56 35 0.20
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
Found at i:48283046 original size:13 final size:13
Alignment explanation
Indices: 48283025--48283056 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
48283015 GCTTGGATCA
*
48283025 TCATCAAATAAAT
1 TCATAAAATAAAT
48283038 TCATAAAATAAAT
1 TCATAAAATAAAT
48283051 TCATAA
1 TCATAA
48283057 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:48283302 original size:30 final size:30
Alignment explanation
Indices: 48283267--48283324 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
48283257 CCTCGACTCT
*
48283267 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
48283297 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
48283325 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:48296532 original size:9 final size:9
Alignment explanation
Indices: 48296518--48296568 Score: 50
Period size: 10 Copynumber: 5.4 Consensus size: 9
48296508 TTTAACATAT
48296518 TTTTTAATA
1 TTTTTAATA
48296527 TTTTTAATA
1 TTTTTAATA
*
48296536 TATTTTGATAA
1 T-TTTTAAT-A
*
48296547 TTTTTATTTA
1 TTTTTA-ATA
48296557 TTTTTAAT-
1 TTTTTAATA
48296565 TTTT
1 TTTT
48296569 AGAGTTATTG
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
8 4 0.11
9 11 0.31
10 17 0.49
11 3 0.09
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (9 bp):
TTTTTAATA
Found at i:48296541 original size:19 final size:19
Alignment explanation
Indices: 48296514--48296569 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 19
48296504 TTGTTTTAAC
*
48296514 ATATTTTTTAATATTTTTA
1 ATATATTTTAATATTTTTA
*
48296533 ATATATTTTGATAATTTTT-
1 ATATATTTTAAT-ATTTTTA
* *
48296552 ATTTATTTTTA-ATTTTTA
1 ATATATTTTAATATTTTTA
48296570 GAGTTATTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
17 6 0.19
19 19 0.61
20 6 0.19
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
ATATATTTTAATATTTTTA
Found at i:48296551 original size:21 final size:21
Alignment explanation
Indices: 48296507--48296551 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
48296497 TTTGATTTTG
*
48296507 TTTTAACATATTTTTTAATAT
1 TTTTAACATATTTTATAATAT
*
48296528 TTTTAATATATTTTGATAAT-T
1 TTTTAACATATTTT-ATAATAT
48296549 TTT
1 TTT
48296552 ATTTATTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTAACATATTTTATAATAT
Found at i:48298355 original size:150 final size:149
Alignment explanation
Indices: 48298092--48298588 Score: 664
Period size: 150 Copynumber: 3.3 Consensus size: 149
48298082 TTTTTTATTG
* * * * *
48298092 AAAGTAATAAAATC-CGAGAAAAATACGAATAAATGGCCGAAATAAGGATTTTTTTTAAATTTAT
1 AAAGTAATAAAATCTGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTAT
*
48298156 TTAAAAAACACACTAAATGAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA
66 TTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAA-AAAA
48298221 TTAGAAAATAGTATTTTTT-
130 TTAGAAAATAGTATTTTTTA
* ** * *
48298240 AAAGTAATAAACTCTGGGGAAAAATACGAACAAAGGGTCGAAATAAGGGTTTTTTTTTAAAATTA
1 AAAGTAATAAAATCTGGAAAAAAATACGAACAAAGGGCCGAAATAAGGG-TTTTTTTTAAATTTA
*
48298305 TTTAAAAAACACAGTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAA
65 TTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAAT-AAAAA
* * *
48298370 ATAAAAAAATAATATATTTTTA
129 ATTAGAAAATAGTAT-TTTTTA
* * *
48298392 TTGAAAATAATAAAATCTGGGAAAAAATACGAACAAAGTGCCGAAATAAGGG--TTTTTT-AATT
1 ---AAAGTAATAAAATCTGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATT
*
48298454 TATTTAAAAAACACACTAAATTAATATATTTCAAACATAATGTACTAAAATAATGTAAAATAAAA
63 TATTTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAA
*
48298519 AAGTAGAAAATAGTATATTTTTAA
128 AATTAGAAAATAGTAT-TTTTT-A
*
48298543 AAAGTACTAAAAT-TCGAGAAAAAAATACGAACAAAGGGCCGAAATA
1 AAAGTAATAAAATCT-G-GAAAAAAATACGAACAAAGGGCCGAAATA
48298589 CGAACAATTG
Statistics
Matches: 309, Mismatches: 29, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
147 1 0.00
148 25 0.08
149 55 0.18
150 108 0.35
151 70 0.23
152 6 0.02
155 44 0.14
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.29
Consensus pattern (149 bp):
AAAGTAATAAAATCTGGAAAAAAATACGAACAAAGGGCCGAAATAAGGGTTTTTTTTAAATTTAT
TTAAAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAAAAAT
TAGAAAATAGTATTTTTTA
Found at i:48302920 original size:6 final size:6
Alignment explanation
Indices: 48302906--48302939 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
48302896 ATCCACCATT
*
48302906 TCTCTC TCTCCC TCTCCC TCTCCC TCTCCC TCTC
1 TCTCCC TCTCCC TCTCCC TCTCCC TCTCCC TCTC
48302940 TTCTAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (6 bp):
TCTCCC
Found at i:48305969 original size:16 final size:16
Alignment explanation
Indices: 48305948--48305983 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
48305938 TTTGGTGTTG
48305948 TAGTTGGTGACTGCAT
1 TAGTTGGTGACTGCAT
48305964 TAGTTGGTGACTGCAT
1 TAGTTGGTGACTGCAT
48305980 TAGT
1 TAGT
48305984 CTTAATAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.11, G:0.31, T:0.39
Consensus pattern (16 bp):
TAGTTGGTGACTGCAT
Found at i:48310235 original size:5 final size:5
Alignment explanation
Indices: 48310225--48310251 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
48310215 AAATAGGGGG
48310225 AAAGA AAAGA AAAGA AAAGA AAAGA AA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AA
48310252 TCAAAAGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:48310257 original size:15 final size:15
Alignment explanation
Indices: 48310225--48310260 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
48310215 AAATAGGGGG
*
48310225 AAAGAAAAGAAAAGA
1 AAAGAAAAGAAAACA
*
48310240 AAAGAAAAGAAATCA
1 AAAGAAAAGAAAACA
48310255 AAAGAA
1 AAAGAA
48310261 TCCGCGTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.78, C:0.03, G:0.17, T:0.03
Consensus pattern (15 bp):
AAAGAAAAGAAAACA
Found at i:48311421 original size:26 final size:26
Alignment explanation
Indices: 48311388--48311457 Score: 106
Period size: 28 Copynumber: 2.7 Consensus size: 26
48311378 AGTAACATTT
48311388 AAAA-TTATATATAATAGATGTTCAA
1 AAAACTTATATATAATAGATGTTCAA
*
48311413 AAAACTTATATATATAATAGTTGTTCAA
1 AAAAC-T-TATATATAATAGATGTTCAA
48311441 AAAACTTATATATAATA
1 AAAACTTATATATAATA
48311458 AATGAATATT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
25 4 0.10
26 11 0.27
27 2 0.05
28 24 0.59
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (26 bp):
AAAACTTATATATAATAGATGTTCAA
Found at i:48311429 original size:28 final size:28
Alignment explanation
Indices: 48311393--48311454 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
48311383 CATTTAAAAT
48311393 TATATATAATAGATGTTCAAAAAACTTA
1 TATATATAATAGATGTTCAAAAAACTTA
*
48311421 TATATATAATAGTTGTTCAAAAAACTTA
1 TATATATAATAGATGTTCAAAAAACTTA
48311449 TATATA
1 TATATA
48311455 ATAAATGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (28 bp):
TATATATAATAGATGTTCAAAAAACTTA
Found at i:48311480 original size:16 final size:18
Alignment explanation
Indices: 48311449--48311482 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
48311439 AAAAAACTTA
48311449 TATATAATAAATGAATAT
1 TATATAATAAATGAATAT
48311467 TATAT-ATAAA-GAATAT
1 TATATAATAAATGAATAT
48311483 CTTTTATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
TATATAATAAATGAATAT
Found at i:48316422 original size:12 final size:12
Alignment explanation
Indices: 48316407--48316438 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
48316397 CCTCAGCTTA
48316407 AGCTCAAGCTCC
1 AGCTCAAGCTCC
*
48316419 AGCTCCAGCTCC
1 AGCTCAAGCTCC
48316431 AGCTCAAG
1 AGCTCAAG
48316439 TCAGGTCAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.25, C:0.41, G:0.19, T:0.16
Consensus pattern (12 bp):
AGCTCAAGCTCC
Found at i:48321940 original size:27 final size:26
Alignment explanation
Indices: 48321910--48321968 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
48321900 TGTCTTACCG
48321910 TTTTAATGAT-TTTTTATATTTTTAAAT
1 TTTTAA-GATATTTTTATATTTTT-AAT
* * *
48321937 TTTTTAGATATTTTTCTATTTTTATT
1 TTTTAAGATATTTTTATATTTTTAAT
48321963 TTTTAA
1 TTTTAA
48321969 ATTATAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
26 10 0.37
27 17 0.63
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.69
Consensus pattern (26 bp):
TTTTAAGATATTTTTATATTTTTAAT
Found at i:48325617 original size:10 final size:9
Alignment explanation
Indices: 48325585--48325622 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
48325575 CAGTTGAAAC
48325585 ATATTTTTA
1 ATATTTTTA
48325594 A-ATTTTTA
1 ATATTTTTA
*
48325602 TTATTTTTA
1 ATATTTTTA
48325611 ATCATTTTTA
1 AT-ATTTTTA
48325621 AT
1 AT
48325623 TGGACCGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
8 7 0.28
9 9 0.36
10 9 0.36
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (9 bp):
ATATTTTTA
Found at i:48335268 original size:15 final size:15
Alignment explanation
Indices: 48335250--48335287 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
48335240 ACAGGGTCCA
48335250 TCTCCAAGGGTTGCC
1 TCTCCAAGGGTTGCC
* *
48335265 TCTCCTAGGGTTGCT
1 TCTCCAAGGGTTGCC
48335280 TCTCCAAG
1 TCTCCAAG
48335288 AGCTGCTTCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.13, C:0.32, G:0.24, T:0.32
Consensus pattern (15 bp):
TCTCCAAGGGTTGCC
Found at i:48335308 original size:18 final size:17
Alignment explanation
Indices: 48335281--48335329 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
48335271 AGGGTTGCTT
48335281 CTCCAAGAGCTGCTTCCC
1 CTCC-AGAGCTGCTTCCC
*
48335299 CTCCACGAGCTGCATCCC
1 CTCCA-GAGCTGCTTCCC
48335317 CT--AGAGCTGCTTC
1 CTCCAGAGCTGCTTC
48335330 ACCACCTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 9 0.32
16 1 0.04
17 1 0.04
18 17 0.61
ACGTcount: A:0.16, C:0.43, G:0.18, T:0.22
Consensus pattern (17 bp):
CTCCAGAGCTGCTTCCC
Found at i:48335376 original size:15 final size:15
Alignment explanation
Indices: 48335358--48335402 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
48335348 TCCACCCCCT
48335358 CGAGCTGCTTCTCCA
1 CGAGCTGCTTCTCCA
*
48335373 CGAGTTGCTTCTCCA
1 CGAGCTGCTTCTCCA
* *
48335388 AGAGGTGCTTCTCCA
1 CGAGCTGCTTCTCCA
48335403 AAACCTGCTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.16, C:0.33, G:0.22, T:0.29
Consensus pattern (15 bp):
CGAGCTGCTTCTCCA
Found at i:48335403 original size:15 final size:15
Alignment explanation
Indices: 48335363--48335403 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
48335353 CCCCTCGAGC
* *
48335363 TGCTTCTCCACGAGT
1 TGCTTCTCCAAGAGG
48335378 TGCTTCTCCAAGAGG
1 TGCTTCTCCAAGAGG
48335393 TGCTTCTCCAA
1 TGCTTCTCCAA
48335404 AACCTGCTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.17, C:0.32, G:0.20, T:0.32
Consensus pattern (15 bp):
TGCTTCTCCAAGAGG
Found at i:48355219 original size:26 final size:26
Alignment explanation
Indices: 48355157--48355225 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 26
48355147 ATATAAAATG
*
48355157 ATAAT-TAGATTAAATT-AATTGCTAA
1 ATAATGTA-ATTAAATTAAAATGCTAA
* * *
48355182 ATAATGTGATTAAATTAAAATGTTAT
1 ATAATGTAATTAAATTAAAATGCTAA
48355208 ATAATGTAATTAAATTAA
1 ATAATGTAATTAAATTAA
48355226 GTTAATAATG
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 13 0.35
26 24 0.65
ACGTcount: A:0.49, C:0.01, G:0.09, T:0.41
Consensus pattern (26 bp):
ATAATGTAATTAAATTAAAATGCTAA
Found at i:48369131 original size:13 final size:13
Alignment explanation
Indices: 48369113--48369137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48369103 TCAAAATAAG
48369113 TGATTTTGAAAAA
1 TGATTTTGAAAAA
48369126 TGATTTTGAAAA
1 TGATTTTGAAAA
48369138 TTTTAGTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (13 bp):
TGATTTTGAAAAA
Found at i:48369414 original size:21 final size:21
Alignment explanation
Indices: 48369379--48369432 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
48369369 ATAAAATTTA
* *
48369379 ATTAGAATATATAAATATAATC
1 ATTA-AATATTTAAATATAACC
48369401 ATTAAATATTTAAATATAACC
1 ATTAAATATTTAAATATAACC
48369422 ATTAAATATTT
1 ATTAAATATTT
48369433 GTAATTAGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 26 0.87
22 4 0.13
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.41
Consensus pattern (21 bp):
ATTAAATATTTAAATATAACC
Found at i:48369630 original size:13 final size:13
Alignment explanation
Indices: 48369614--48369639 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
48369604 TCAAAAGTGC
48369614 TTTAAGCTAAAAA
1 TTTAAGCTAAAAA
48369627 TTTAAGCTAAAAA
1 TTTAAGCTAAAAA
48369640 CAACTTGTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTAAGCTAAAAA
Found at i:48380922 original size:149 final size:149
Alignment explanation
Indices: 48380652--48380953 Score: 586
Period size: 149 Copynumber: 2.0 Consensus size: 149
48380642 GTCACTCGCG
48380652 GAGTTTCCATTTGCCAGCTTTCTACATTCGGTATAATCTTGGCTTCTATTTTGATATGCTGATCA
1 GAGTTTCCATTTGCCAGCTTTCTACATTCGGTATAATCTTGGCTTCTATTTTGATATGCTGATCA
48380717 CATTGTTCTTTTATTGATGCAATGTCTGGATTAGTTGAATGGTTCACTTGAAATAACCTGGTTTA
66 CATTGTTCTTTTATTGATGCAATGTCTGGATTAGTTGAATGGTTCACTTGAAATAACCTGGTTTA
48380782 CTATGTATTGGCATGATAA
131 CTATGTATTGGCATGATAA
*
48380801 GAGTTTCCATTTGCGAGCTTTCTACATTCGGTATAATCTTGGCTTCTATTTTGATATGCTGATCA
1 GAGTTTCCATTTGCCAGCTTTCTACATTCGGTATAATCTTGGCTTCTATTTTGATATGCTGATCA
*
48380866 CATTGTTCTTTTATTGATGCAATGTCTGGATTAGTTGAATGGTTCTCTTGAAATAACCTGGTTTA
66 CATTGTTCTTTTATTGATGCAATGTCTGGATTAGTTGAATGGTTCACTTGAAATAACCTGGTTTA
48380931 CTATGTATTGGCATGATAA
131 CTATGTATTGGCATGATAA
48380950 GAGT
1 GAGT
48380954 CTGCTACTAA
Statistics
Matches: 151, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 151 1.00
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (149 bp):
GAGTTTCCATTTGCCAGCTTTCTACATTCGGTATAATCTTGGCTTCTATTTTGATATGCTGATCA
CATTGTTCTTTTATTGATGCAATGTCTGGATTAGTTGAATGGTTCACTTGAAATAACCTGGTTTA
CTATGTATTGGCATGATAA
Found at i:48386690 original size:20 final size:19
Alignment explanation
Indices: 48386654--48386797 Score: 69
Period size: 20 Copynumber: 7.1 Consensus size: 19
48386644 GTGAGTATTA
*
48386654 TTTTATTATTTTCTTATAAT
1 TTTTAATATTTT-TTATAAT
48386674 TTTTAATATATTTTTATAAT
1 TTTTAATAT-TTTTTATAAT
** * *
48386694 TTCTT-ATAATTCATAATGAT
1 TT-TTAAT-ATTTTTTATAAT
48386714 TATCTATAAT-TTTTTTATAAT
1 T-T-T-TAATATTTTTTATAAT
* * * *
48386735 ACTTTAAAATATTTAATAATT
1 -TTTTAATATTTTTTATAA-T
48386756 ATCTTTAAT-TTTTTTATAAT
1 -T-TTTAATATTTTTTATAAT
*
48386776 TCTTAATATTTTTTTATAAT
1 TTTTAATA-TTTTTTATAAT
48386796 TT
1 TT
48386798 CGTATAACTT
Statistics
Matches: 93, Mismatches: 19, Indels: 24
0.68 0.14 0.18
Matches are distributed among these distances:
18 5 0.05
19 4 0.04
20 48 0.52
21 28 0.30
22 6 0.06
23 2 0.02
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (19 bp):
TTTTAATATTTTTTATAAT
Found at i:48386730 original size:41 final size:40
Alignment explanation
Indices: 48386684--48386781 Score: 117
Period size: 41 Copynumber: 2.4 Consensus size: 40
48386674 TTTTAATATA
* *
48386684 TTTTTATAATTTCTTATAAT-TCATAATGATTATCTATAATT
1 TTTTTATAA-TTCTTAAAATAT-ATAATAATTATCTATAATT
* * *
48386725 TTTTTATAATACTTTAAAATATTTAATAATTATCTTTAATT
1 TTTTTATAATTC-TTAAAATATATAATAATTATCTATAATT
48386766 TTTTTATAATTCTTAA
1 TTTTTATAATTCTTAA
48386782 TATTTTTTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
40 6 0.12
41 42 0.86
42 1 0.02
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.57
Consensus pattern (40 bp):
TTTTTATAATTCTTAAAATATATAATAATTATCTATAATT
Found at i:48390189 original size:32 final size:31
Alignment explanation
Indices: 48390153--48390230 Score: 120
Period size: 32 Copynumber: 2.4 Consensus size: 31
48390143 TATCCCACTC
48390153 GAAATATTAAAAGGAATTAGATTATATACTTT
1 GAAATATTAAAAGG-ATTAGATTATATACTTT
48390185 GAAATATTAAAAAGGATTAGATTATATACTTT
1 GAAATATT-AAAAGGATTAGATTATATACTTT
48390217 GAAATTATTTAAAA
1 GAAA-TA-TTAAAA
48390231 TTATCGAATA
Statistics
Matches: 43, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
32 29 0.67
33 12 0.28
34 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.12, T:0.37
Consensus pattern (31 bp):
GAAATATTAAAAGGATTAGATTATATACTTT
Found at i:48397183 original size:13 final size:11
Alignment explanation
Indices: 48397144--48397200 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 11
48397134 TTATTTAGCA
48397144 TTTTC-TTCTTC
1 TTTTCTTTC-TC
*
48397155 TTCTTCTTTTTC
1 TT-TTCTTTCTC
48397167 TTTTCATTGTCTC
1 TTTTC-TT-TCTC
48397180 TTTTCTTTCTC
1 TTTTCTTTCTC
48397191 TGTTTCTTTC
1 T-TTTCTTTC
48397201 ATGGCAGCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 10 0.26
12 19 0.49
13 10 0.26
ACGTcount: A:0.02, C:0.25, G:0.04, T:0.70
Consensus pattern (11 bp):
TTTTCTTTCTC
Found at i:48403154 original size:5 final size:5
Alignment explanation
Indices: 48403144--48403178 Score: 52
Period size: 5 Copynumber: 6.6 Consensus size: 5
48403134 TTATATTATA
48403144 AAAAT ATAATAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT A-AA-AT AAAAT AAAAT AAAAT AAAAT AAA
48403179 CACTTTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 21 0.75
6 4 0.14
7 3 0.11
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:48411649 original size:2 final size:2
Alignment explanation
Indices: 48411642--48411678 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
48411632 TTCTACTCAA
48411642 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
48411679 TTCAATGATT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:48415569 original size:21 final size:21
Alignment explanation
Indices: 48415543--48415587 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
48415533 TCATGCCGTG
*
48415543 GTCCGCATGAGTTGCGGAACT
1 GTCCGCATGAGTTGCAGAACT
*
48415564 GTCCGCATGAGTTGCAGAGCT
1 GTCCGCATGAGTTGCAGAACT
48415585 GTC
1 GTC
48415588 TAAAGTAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.24
Consensus pattern (21 bp):
GTCCGCATGAGTTGCAGAACT
Found at i:48416385 original size:123 final size:123
Alignment explanation
Indices: 48416218--48416464 Score: 415
Period size: 123 Copynumber: 2.0 Consensus size: 123
48416208 CCAAATGCAT
*
48416218 CCAATAGAGGTCTATTATTTAGATGGGGATCATTTGGCCCGCAAGAACTGG-CTCGATTCAAGAA
1 CCAATAGAGGTCTATTATTTAGATGGGAATCATTTGGCCCGCAAGAACTGGCCT-GATTCAAGAA
* * *
48416282 GCTGTTAGAGAAGCCTGTCAGATTGAAGCCTGGTTGGCTCGATAATGAAGATATGGCAA
65 GCTGTTAGAGAAGCCTGTCAAATTGAAGCCTGGTTGGCCCGATAATGAAGATATGACAA
* *
48416341 CCAATGGAGGTCTATTGTTTAGATGGGAATCATTTGGCCCGCAAGAACTGGCCTGATTCAAGAAG
1 CCAATAGAGGTCTATTATTTAGATGGGAATCATTTGGCCCGCAAGAACTGGCCTGATTCAAGAAG
*
48416406 CTGTTGGAGAAGCCTGTCAAATTGAAGCCTGGTTGGCCCGATAATGAAGATATGACAA
66 CTGTTAGAGAAGCCTGTCAAATTGAAGCCTGGTTGGCCCGATAATGAAGATATGACAA
48416464 C
1 C
48416465 TTAGGCTAAT
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
123 114 0.98
124 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (123 bp):
CCAATAGAGGTCTATTATTTAGATGGGAATCATTTGGCCCGCAAGAACTGGCCTGATTCAAGAAG
CTGTTAGAGAAGCCTGTCAAATTGAAGCCTGGTTGGCCCGATAATGAAGATATGACAA
Found at i:48418049 original size:21 final size:21
Alignment explanation
Indices: 48418008--48418049 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
48417998 CATGCCACTA
* *
48418008 TATATATTTTTAATATTTTAT
1 TATATATTTATAATATCTTAT
48418029 TATATA-TTATAATATACTTAT
1 TATATATTTATAATAT-CTTAT
48418050 CATCATCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TATATATTTATAATATCTTAT
Found at i:48420343 original size:30 final size:31
Alignment explanation
Indices: 48420283--48420344 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
48420273 TATAAAATGA
* * *
48420283 TCACTGAATTATTCGAAAGTTTACATTTAAG
1 TCACTGAACTATTCAAAAATTTACATTTAAG
*
48420314 TCACTGAACTATTCAAAAATTT-TATTTAAG
1 TCACTGAACTATTCAAAAATTTACATTTAAG
48420344 T
1 T
48420345 TGATCCAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
30 8 0.30
31 19 0.70
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (31 bp):
TCACTGAACTATTCAAAAATTTACATTTAAG
Found at i:48424320 original size:14 final size:14
Alignment explanation
Indices: 48424272--48424324 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
48424262 TTTAATCATG
*
48424272 TTATATATATTATA
1 TTATATATTTTATA
* *
48424286 ATATTATATTTTGTA
1 TTA-TATATTTTATA
48424301 GCTTATATATTTTATA
1 --TTATATATTTTATA
48424317 TTATATAT
1 TTATATAT
48424325 AAAAACTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
14 10 0.32
15 9 0.29
16 10 0.32
17 2 0.06
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (14 bp):
TTATATATTTTATA
Found at i:48439026 original size:14 final size:14
Alignment explanation
Indices: 48438994--48439034 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
48438984 TAATTTCCGC
48438994 AACAATGAACAACTA
1 AACAATGAA-AACTA
*
48439009 AACAATGAAAATTA
1 AACAATGAAAACTA
*
48439023 AACATTGAAAAC
1 AACAATGAAAAC
48439035 ATATTCATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.61, C:0.15, G:0.07, T:0.17
Consensus pattern (14 bp):
AACAATGAAAACTA
Found at i:48444644 original size:18 final size:17
Alignment explanation
Indices: 48444596--48444645 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 17
48444586 CCTTTTGAAA
48444596 ATTTTTA-ATTTT-TAT
1 ATTTTTATATTTTATAT
48444611 ATTTTTATGAATTTTTATAAT
1 ATTTTTAT--A-TTTTAT-AT
48444632 ATTTTTATATTTTA
1 ATTTTTATATTTTA
48444646 AATTTAGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
15 7 0.24
18 6 0.21
19 5 0.17
20 1 0.03
21 10 0.34
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (17 bp):
ATTTTTATATTTTATAT
Found at i:48444957 original size:58 final size:59
Alignment explanation
Indices: 48444861--48445005 Score: 177
Period size: 58 Copynumber: 2.5 Consensus size: 59
48444851 AATGGAGTGA
* * * ** *
48444861 TTCTTAATTTGATACCTAAATTCTTTTTTGGTCTAATTTGGTATTTGAACTTGAC-ATTTT
1 TTCTTAATTTGGTACCTAAA--CTTTTTTAGTCCAATTTGACACTTGAACTTGACTATTTT
* *
48444921 TTCTTAATTTGGTACTTAAACTTTTTTAGTCCAATTTGACACTTGAACTTGACTCTTTT
1 TTCTTAATTTGGTACCTAAACTTTTTTAGTCCAATTTGACACTTGAACTTGACTATTTT
*
48444980 TTC-TAATTTGGTACCTAATCTTTTTT
1 TTCTTAATTTGGTACCTAAACTTTTTT
48445006 TTTTGTTCAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
58 49 0.66
59 7 0.09
60 18 0.24
ACGTcount: A:0.23, C:0.14, G:0.10, T:0.52
Consensus pattern (59 bp):
TTCTTAATTTGGTACCTAAACTTTTTTAGTCCAATTTGACACTTGAACTTGACTATTTT
Found at i:48449660 original size:3 final size:3
Alignment explanation
Indices: 48449652--48449677 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
48449642 AAAAGAGGAT
48449652 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
48449678 AGAGGGAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:48452643 original size:20 final size:19
Alignment explanation
Indices: 48452614--48452653 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
48452604 TTTTTTTCAA
48452614 TTTTTAATTTTAAGTTTTC
1 TTTTTAATTTTAAGTTTTC
*
48452633 TTTTGTAATTTTAGGTTTTC
1 TTTT-TAATTTTAAGTTTTC
48452653 T
1 T
48452654 GAAGTTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.17, C:0.05, G:0.10, T:0.68
Consensus pattern (19 bp):
TTTTTAATTTTAAGTTTTC
Found at i:48453915 original size:23 final size:22
Alignment explanation
Indices: 48453889--48453949 Score: 61
Period size: 26 Copynumber: 2.6 Consensus size: 22
48453879 ATTAAAAAGC
48453889 ATATTAAAAATAAATAAAAAAAT
1 ATATTAAAAATAAA-AAAAAAAT
*
48453912 ATATTTTAGAAAATTAAAAAAATAAT
1 ATA--TTA-AAAA-TAAAAAAAAAAT
48453938 ATA-TAAAAATAA
1 ATATTAAAAATAA
48453950 TCTAAACTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
21 3 0.09
22 4 0.12
23 5 0.15
25 3 0.09
26 14 0.42
27 4 0.12
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (22 bp):
ATATTAAAAATAAAAAAAAAAT
Found at i:48453955 original size:26 final size:23
Alignment explanation
Indices: 48453889--48453955 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 23
48453879 ATTAAAAAGC
*
48453889 ATATTAAAAATAAATAAAAAAAT
1 ATATTAAAAATAATTAAAAAAAT
* *
48453912 ATATTTTAGAA-AATTAAAAAAAT
1 ATA-TTAAAAATAATTAAAAAAAT
48453935 AATATATAAAAATAATCTAAA
1 -ATAT-TAAAAATAAT-TAAA
48453956 CTTCAAAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
23 15 0.44
24 12 0.35
25 3 0.09
26 4 0.12
ACGTcount: A:0.67, C:0.01, G:0.01, T:0.30
Consensus pattern (23 bp):
ATATTAAAAATAATTAAAAAAAT
Found at i:48455455 original size:11 final size:11
Alignment explanation
Indices: 48455426--48455455 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
48455416 TATTTTAAAT
*
48455426 AATTATTAGAA
1 AATTATTTGAA
48455437 AATTATTTGAA
1 AATTATTTGAA
48455448 AATTATTT
1 AATTATTT
48455456 TTTTGGTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (11 bp):
AATTATTTGAA
Found at i:48455486 original size:10 final size:10
Alignment explanation
Indices: 48455464--48455543 Score: 54
Period size: 10 Copynumber: 7.6 Consensus size: 10
48455454 TTTTTTGGTA
48455464 AAAAATTATTT
1 AAAAATTA-TT
48455475 AAAAATTATT
1 AAAAATTATT
* *
48455485 AACAATTATG
1 AAAAATTATT
*
48455495 AGAAATTATT
1 AAAAATTATT
*
48455505 AAATATATATTTT
1 AAA-A-AT-TATT
*
48455518 TAAAA-TATTT
1 AAAAATTA-TT
*
48455528 AAAAATGATT
1 AAAAATTATT
48455538 AAAAAT
1 AAAAAT
48455544 CTTGCTTGGA
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
9 1 0.02
10 33 0.62
11 11 0.21
12 3 0.06
13 5 0.09
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.40
Consensus pattern (10 bp):
AAAAATTATT
Found at i:48459079 original size:52 final size:52
Alignment explanation
Indices: 48459001--48459124 Score: 140
Period size: 52 Copynumber: 2.4 Consensus size: 52
48458991 AGAAAACATG
** * * * *
48459001 CCTTGCAGGATGCATTTTCAGCTGAGGTGGTAGAATGTTCTCTGAAAGTGCA
1 CCTTGCAGGACACATTTTCAACTGAGGTGGCAGAATGTTATCTGAAAGCGCA
* *
48459053 CCTTGCAGGACACGTTTTCAACTGAGGTGGCAGAATGTTATTTGAAAGCGCA
1 CCTTGCAGGACACATTTTCAACTGAGGTGGCAGAATGTTATCTGAAAGCGCA
* * **
48459105 TCTTGTAGGACGTATTTTCA
1 CCTTGCAGGACACATTTTCA
48459125 GAGAATATTC
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
52 59 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (52 bp):
CCTTGCAGGACACATTTTCAACTGAGGTGGCAGAATGTTATCTGAAAGCGCA
Found at i:48476315 original size:29 final size:29
Alignment explanation
Indices: 48476266--48476321 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
48476256 ATTATATATT
*
48476266 AAAATAATAAATTTATTTTTTAACTCTTGC
1 AAAATAATAAATTTATATTTTAA-TCTTGC
48476296 AAAA-AATATAATTTA-ATTTTAATCTT
1 AAAATAATA-AATTTATATTTTAATCTT
48476322 AAAAATGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 4 0.17
29 10 0.42
30 10 0.42
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (29 bp):
AAAATAATAAATTTATATTTTAATCTTGC
Found at i:48480624 original size:27 final size:27
Alignment explanation
Indices: 48480594--48480653 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
48480584 AGGTGGAAAA
* *
48480594 GTTTGTACTTGTTTCACTAGTTACAAT
1 GTTTGTACATGATTCACTAGTTACAAT
**
48480621 GTTTGTTGATGATTCACTAGTTACAAT
1 GTTTGTACATGATTCACTAGTTACAAT
*
48480648 GCTTGT
1 GTTTGT
48480654 TGATATTTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (27 bp):
GTTTGTACATGATTCACTAGTTACAAT
Found at i:48480654 original size:27 final size:27
Alignment explanation
Indices: 48480606--48480657 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
48480596 TTGTACTTGT
*
48480606 TTCACTAGTTACAATGTTTGTTGATGA
1 TTCACTAGTTACAATGCTTGTTGATGA
48480633 TTCACTAGTTACAATGCTTGTTGAT
1 TTCACTAGTTACAATGCTTGTTGAT
48480658 ATTTGACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.44
Consensus pattern (27 bp):
TTCACTAGTTACAATGCTTGTTGATGA
Found at i:48483928 original size:3 final size:3
Alignment explanation
Indices: 48483915--48483954 Score: 71
Period size: 3 Copynumber: 13.0 Consensus size: 3
48483905 TATCTGAATA
48483915 TTC TTC TTTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
48483955 ATAATTTTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 33 0.92
4 3 0.08
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:48489214 original size:21 final size:21
Alignment explanation
Indices: 48489188--48489228 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
48489178 ATCTGCTCAA
* *
48489188 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
48489209 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
48489229 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:48501075 original size:10 final size:10
Alignment explanation
Indices: 48501047--48501079 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
48501037 CCACGCCAAC
48501047 AAATAATTTA
1 AAATAATTTA
*
48501057 AAAT-TTTTA
1 AAATAATTTA
48501066 AAATAATTTA
1 AAATAATTTA
48501076 AAAT
1 AAAT
48501080 TTAAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
9 8 0.40
10 12 0.60
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AAATAATTTA
Found at i:48501087 original size:19 final size:19
Alignment explanation
Indices: 48501047--48501087 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
48501037 CCACGCCAAC
**
48501047 AAATAATTTAAAATTTTTA
1 AAATAATTTAAAATTTAAA
48501066 AAATAATTTAAAATTTAAA
1 AAATAATTTAAAATTTAAA
48501085 AAA
1 AAA
48501088 ATTAACATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAATAATTTAAAATTTAAA
Found at i:48502954 original size:19 final size:19
Alignment explanation
Indices: 48502916--48502955 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
48502906 CTTATAATAA
48502916 ACACTTTTAAGGAAAAAAAT
1 ACACTTTTAA-GAAAAAAAT
48502936 ACACTTTTAA-AATAAAAAT
1 ACACTTTTAAGAA-AAAAAT
48502955 A
1 A
48502956 TTTCTAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 7 0.37
20 10 0.53
ACGTcount: A:0.57, C:0.10, G:0.05, T:0.28
Consensus pattern (19 bp):
ACACTTTTAAGAAAAAAAT
Found at i:48513945 original size:16 final size:16
Alignment explanation
Indices: 48513924--48513968 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
48513914 TCATGCCCAT
48513924 AAAATATTTTATGTTA
1 AAAATATTTTATGTTA
48513940 AAAATATATTT-T-TTA
1 AAAATAT-TTTATGTTA
48513955 AAAA-A-TTTATGTTA
1 AAAATATTTTATGTTA
48513969 TAATGAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 3 0.12
13 1 0.04
14 4 0.15
15 7 0.27
16 8 0.31
17 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (16 bp):
AAAATATTTTATGTTA
Found at i:48526683 original size:20 final size:20
Alignment explanation
Indices: 48526641--48526691 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
48526631 TATTTTCATA
*
48526641 TTTAAAATTTATTGTATTTT
1 TTTAAAATTAATTGTATTTT
*
48526661 TTTAAAATTAATT-TTTTTAT
1 TTTAAAATTAATTGTATTT-T
*
48526681 TTTTAAATTAA
1 TTTAAAATTAA
48526692 AAATTCAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTAAAATTAATTGTATTTT
Found at i:48528587 original size:18 final size:17
Alignment explanation
Indices: 48528540--48528587 Score: 78
Period size: 17 Copynumber: 2.8 Consensus size: 17
48528530 TGTTAATTTC
48528540 GTTGGTCGATATGAGTT
1 GTTGGTCGATATGAGTT
48528557 GTTGGTCGATATGAGTT
1 GTTGGTCGATATGAGTT
*
48528574 GTTTGTCTGATATG
1 GTTGGTC-GATATG
48528588 GTAAGACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 23 0.79
18 6 0.21
ACGTcount: A:0.17, C:0.06, G:0.33, T:0.44
Consensus pattern (17 bp):
GTTGGTCGATATGAGTT
Found at i:48538622 original size:59 final size:59
Alignment explanation
Indices: 48538530--48538652 Score: 201
Period size: 59 Copynumber: 2.1 Consensus size: 59
48538520 TACAATATCC
*
48538530 AACAGATAACAACAAAGTAGTGGTAATATAATAGCAAAACGGCACTAAAATAGTGACAA
1 AACAGATAACAACAAAGTAGTAGTAATATAATAGCAAAACGGCACTAAAATAGTGACAA
* * **
48538589 AACAGATAACAACAAAGTAGTAGTAATATAATAGCGAAATGGTGCTAAAATAGTGACAA
1 AACAGATAACAACAAAGTAGTAGTAATATAATAGCAAAACGGCACTAAAATAGTGACAA
48538648 AACAG
1 AACAG
48538653 CAGCAAAAAG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.52, C:0.12, G:0.18, T:0.18
Consensus pattern (59 bp):
AACAGATAACAACAAAGTAGTAGTAATATAATAGCAAAACGGCACTAAAATAGTGACAA
Found at i:48541922 original size:16 final size:16
Alignment explanation
Indices: 48541901--48541940 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
48541891 CGGGTAGAGA
*
48541901 GAGTTAATTTTGAATT
1 GAGTTAATTATGAATT
*
48541917 GAGTTAA-TATGGATT
1 GAGTTAATTATGAATT
48541932 GAGTTAATT
1 GAGTTAATT
48541941 CAGATTTGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.45
Consensus pattern (16 bp):
GAGTTAATTATGAATT
Found at i:48543854 original size:28 final size:29
Alignment explanation
Indices: 48543818--48543872 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
48543808 TTTGATTCTT
*
48543818 TTTAATAGTA-CGAGACTAAATTGATCCA
1 TTTAATAGTAGAGAGACTAAATTGATCCA
*
48543846 TTTAATAGTAGAGAGACTAATTTGATC
1 TTTAATAGTAGAGAGACTAAATTGATC
48543873 AAGTTCCTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 10 0.42
29 14 0.58
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (29 bp):
TTTAATAGTAGAGAGACTAAATTGATCCA
Found at i:48544465 original size:21 final size:21
Alignment explanation
Indices: 48544441--48544480 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
48544431 CAAATTTGAT
48544441 TAAATAAAT-TATTAAAAATCA
1 TAAA-AAATATATTAAAAATCA
*
48544462 TAAAAATTATATTAAAAAT
1 TAAAAAATATATTAAAAAT
48544481 AGAAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAAAATATATTAAAAATCA
Found at i:48546455 original size:21 final size:21
Alignment explanation
Indices: 48546419--48546479 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
48546409 ATTGGGTGGA
* * *
48546419 TCAGCTCTTACGAGCTTTTGT
1 TCAGCTCTTACAAGCTTCTAT
*
48546440 TCAGCTCTTATAAGCTTCTAT
1 TCAGCTCTTACAAGCTTCTAT
*
48546461 TCAGCT-TT-CCAGCTTCTAT
1 TCAGCTCTTACAAGCTTCTAT
48546480 CGGCGTATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 9 0.26
20 2 0.06
21 23 0.68
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.43
Consensus pattern (21 bp):
TCAGCTCTTACAAGCTTCTAT
Found at i:48548557 original size:2 final size:2
Alignment explanation
Indices: 48548550--48548580 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
48548540 AAGAATACAA
*
48548550 AC AC AC AC AC AC AC AC AC AT AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
48548581 TATAATAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.45, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:48548581 original size:12 final size:12
Alignment explanation
Indices: 48548544--48548582 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
48548534 GAAGCAAAGA
*
48548544 ATACAAACACAC
1 ATACACACACAC
*
48548556 ACACACACACAC
1 ATACACACACAC
48548568 ATACACACACAC
1 ATACACACACAC
48548580 ATA
1 ATA
48548583 TAATAGATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.54, C:0.38, G:0.00, T:0.08
Consensus pattern (12 bp):
ATACACACACAC
Found at i:48551533 original size:149 final size:149
Alignment explanation
Indices: 48551258--48551563 Score: 576
Period size: 149 Copynumber: 2.1 Consensus size: 149
48551248 CATGGGCCAC
* *
48551258 TTACTTTTTAATTTTTCAATGTACTTATAAATAAGAAATATGATTTACTTTTGTTAAATGAATTT
1 TTACTTTTTAATTTTTCAATGTACCTATAAATAAGAAATATAATTTACTTTTGTTAAATGAATTT
*
48551323 ATATAATAAAAAATTTAATTTTATACTAAATTATTTATATCTAAATTGTTCAGTTTCCACAAACA
66 ATATAATAAAAAATTTAATTTTATACTAAATTATTTATATCTAAATTGTTCAGTTTACACAAACA
48551388 GAAAAATAAAAAAAATATT
131 GAAAAATAAAAAAAATATT
48551407 TTACTTTTTAATTTTTCAATGTACCTATAAATAAGAAATATAATTTACTTTTGTTAAATGAATTT
1 TTACTTTTTAATTTTTCAATGTACCTATAAATAAGAAATATAATTTACTTTTGTTAAATGAATTT
*
48551472 ATATAATAAAAAATTTAATTTTATACTAAATTATTTATATCTAAATTGTTCAGTTTACACAAACC
66 ATATAATAAAAAATTTAATTTTATACTAAATTATTTATATCTAAATTGTTCAGTTTACACAAACA
48551537 GAAAAATAAAAAAAATATT
131 GAAAAATAAAAAAAATATT
48551556 TTACTTTT
1 TTACTTTT
48551564 AAATAATAAA
Statistics
Matches: 153, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
149 153 1.00
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (149 bp):
TTACTTTTTAATTTTTCAATGTACCTATAAATAAGAAATATAATTTACTTTTGTTAAATGAATTT
ATATAATAAAAAATTTAATTTTATACTAAATTATTTATATCTAAATTGTTCAGTTTACACAAACA
GAAAAATAAAAAAAATATT
Found at i:48566736 original size:15 final size:15
Alignment explanation
Indices: 48566716--48566748 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
48566706 GGAGGAGAAG
*
48566716 AAGAAGAAGAGAAAC
1 AAGAAGAAGAAAAAC
48566731 AAGAAGAAGAAAAAC
1 AAGAAGAAGAAAAAC
48566746 AAG
1 AAG
48566749 CAGGGCAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.06, G:0.24, T:0.00
Consensus pattern (15 bp):
AAGAAGAAGAAAAAC
Found at i:48572197 original size:27 final size:26
Alignment explanation
Indices: 48572121--48572198 Score: 77
Period size: 28 Copynumber: 2.9 Consensus size: 26
48572111 CTTGAATTAT
*
48572121 ATTTTC-TTTTATTTTAAAACTTAAA
1 ATTTTCATTTTATTTTAAAATTTAAA
* *
48572146 ATTTTTATGTCTTATTTTAATATTTAAA
1 ATTTTCAT-T-TTATTTTAAAATTTAAA
* *
48572174 CTATTTCATTTTATTTCAAAATTTA
1 AT-TTTCATTTTATTTTAAAATTTA
48572199 CTGTCATCCA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
25 5 0.12
26 1 0.02
27 14 0.33
28 17 0.40
29 5 0.12
ACGTcount: A:0.33, C:0.08, G:0.01, T:0.58
Consensus pattern (26 bp):
ATTTTCATTTTATTTTAAAATTTAAA
Found at i:48572464 original size:6 final size:6
Alignment explanation
Indices: 48572455--48572480 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
48572445 AAAAAAACGG
48572455 ATCTAA ATCTAA ATCTAA ATCTAA AT
1 ATCTAA ATCTAA ATCTAA ATCTAA AT
48572481 GAAGGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (6 bp):
ATCTAA
Found at i:48579083 original size:11 final size:11
Alignment explanation
Indices: 48579067--48579097 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
48579057 TCCCAGTAGA
48579067 GTGTATAATGT
1 GTGTATAATGT
48579078 GTGTATAATGT
1 GTGTATAATGT
*
48579089 GTGAATAAT
1 GTGTATAAT
48579098 ATATTGAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.26, T:0.42
Consensus pattern (11 bp):
GTGTATAATGT
Found at i:48580240 original size:30 final size:33
Alignment explanation
Indices: 48580204--48580271 Score: 88
Period size: 35 Copynumber: 2.1 Consensus size: 33
48580194 CAAAACTCAA
*
48580204 ATTTAAAAC-TTA-T-GTATAATCTAGATTATC
1 ATTTAAAACTTTACTAGTATAATCAAGATTATC
48580234 ATTTAAAACTTTACTTAAGTATAATCAAGATTATC
1 ATTTAAAACTTTAC-T-AGTATAATCAAGATTATC
48580269 ATT
1 ATT
48580272 GTTTTGACAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
30 9 0.28
31 3 0.09
33 1 0.03
35 19 0.59
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (33 bp):
ATTTAAAACTTTACTAGTATAATCAAGATTATC
Found at i:48586945 original size:40 final size:40
Alignment explanation
Indices: 48586901--48586978 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 40
48586891 TTTTATGATG
*
48586901 TAAAAATAATTGTTTTTATTTACTTGAAAAATAATTTTGA
1 TAAAAATAATTGTATTTATTTACTTGAAAAATAATTTTGA
*
48586941 TAAAAATAGTTGTATTTATTTACTTGAAAAATAATTTT
1 TAAAAATAATTGTATTTATTTACTTGAAAAATAATTTT
48586979 AAATATATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (40 bp):
TAAAAATAATTGTATTTATTTACTTGAAAAATAATTTTGA
Found at i:48595369 original size:3 final size:3
Alignment explanation
Indices: 48595361--48595391 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
48595351 AGGTTACTCA
48595361 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
48595392 GTAGTTTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:48596597 original size:33 final size:33
Alignment explanation
Indices: 48596529--48596601 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
48596519 AAAATTTATT
*
48596529 TATACATAAGAAATTTTGATTATAGTTTCAATA
1 TATACATAAGAAATTTTGATTATAGATTCAATA
* * *
48596562 TATATATATGAAATTTTGATTGTA-ATTCAACTA
1 TATACATAAGAAATTTTGATTATAGATTCAA-TA
48596595 TATACAT
1 TATACAT
48596602 TTAAAGTAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 5 0.15
33 29 0.85
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.44
Consensus pattern (33 bp):
TATACATAAGAAATTTTGATTATAGATTCAATA
Found at i:48596835 original size:18 final size:17
Alignment explanation
Indices: 48596793--48596835 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
48596783 GTTTTAAGTT
*
48596793 TATAATATTTTATATTA
1 TATAATTTTTTATATTA
* *
48596810 TGTTATTTTTATATATTA
1 TATAATTTTT-TATATTA
48596828 TATAATTT
1 TATAATTT
48596836 AGAACACATT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TATAATTTTTTATATTA
Found at i:48599430 original size:12 final size:12
Alignment explanation
Indices: 48599413--48599437 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48599403 CTAACAGCCC
48599413 CAGTATTAGGAG
1 CAGTATTAGGAG
48599425 CAGTATTAGGAG
1 CAGTATTAGGAG
48599437 C
1 C
48599438 CCTGATGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.24
Consensus pattern (12 bp):
CAGTATTAGGAG
Found at i:48600510 original size:21 final size:21
Alignment explanation
Indices: 48600460--48600511 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
48600450 AATTTAGTCC
48600460 TTAATATTTATATTTTTGTTA
1 TTAATATTTATATTTTTGTTA
*
48600481 TTTATATTTATATTTTT-TTGA
1 TTAATATTTATATTTTTGTT-A
*
48600502 TTAAAATTTA
1 TTAATATTTA
48600512 ATCATTAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (21 bp):
TTAATATTTATATTTTTGTTA
Found at i:48611611 original size:6 final size:6
Alignment explanation
Indices: 48611600--48611628 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
48611590 AGAACAAGCA
48611600 GCAGCG GCAGCG GCAGCG GCAGCG GCAGC
1 GCAGCG GCAGCG GCAGCG GCAGCG GCAGC
48611629 AGAAGGTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.34, G:0.48, T:0.00
Consensus pattern (6 bp):
GCAGCG
Found at i:48619177 original size:21 final size:22
Alignment explanation
Indices: 48619146--48619187 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
48619136 TAATAATAAT
48619146 ATCAATTAAA-TTAA-ATTTTA
1 ATCAATTAAATTTAATATTTTA
48619166 ATCAATTTAAATTTAATATTTT
1 ATCAA-TTAAATTTAATATTTT
48619188 TTATTCGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 5 0.26
22 4 0.21
23 5 0.26
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
ATCAATTAAATTTAATATTTTA
Found at i:48630792 original size:29 final size:30
Alignment explanation
Indices: 48630750--48630808 Score: 102
Period size: 29 Copynumber: 2.0 Consensus size: 30
48630740 ACAAAGACAT
48630750 ATTGGCTAAGTTCAAAG-ACCCTAATCCAG
1 ATTGGCTAAGTTCAAAGAACCCTAATCCAG
*
48630779 ATTGGTTAAGTTCAAAGAACCCTAATCCAG
1 ATTGGCTAAGTTCAAAGAACCCTAATCCAG
48630809 TCCCTGCCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 16 0.57
30 12 0.43
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (30 bp):
ATTGGCTAAGTTCAAAGAACCCTAATCCAG
Found at i:48642582 original size:27 final size:26
Alignment explanation
Indices: 48642527--48642585 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
48642517 AACTTGACAC
* *
48642527 TTTTTTCCTAATTTGGTACCTAAGCT
1 TTTTTTCCTAATTTGATACCTAAACT
**
48642553 TTTTTTCCTAATTTGATAGTTAAACT
1 TTTTTTCCTAATTTGATACCTAAACT
48642579 TTTTTTC
1 TTTTTTC
48642586 TATTCAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.20, C:0.15, G:0.08, T:0.56
Consensus pattern (26 bp):
TTTTTTCCTAATTTGATACCTAAACT
Found at i:48654419 original size:18 final size:17
Alignment explanation
Indices: 48654362--48654422 Score: 70
Period size: 17 Copynumber: 3.5 Consensus size: 17
48654352 ATTGTATGAT
48654362 TTTTTAAATTATTTTAAA
1 TTTTTAAA-TATTTTAAA
* * *
48654380 -TTCTAATTATTTTAAG
1 TTTTTAAATATTTTAAA
48654396 TTTTTAAATATTTTATAA
1 TTTTTAAATATTTTA-AA
48654414 TTTTTAAAT
1 TTTTTAAAT
48654423 TATTAGTTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
16 8 0.23
17 17 0.49
18 10 0.29
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTTTAAATATTTTAAA
Found at i:48655476 original size:14 final size:14
Alignment explanation
Indices: 48655457--48655488 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
48655447 ACTTGTGTCA
48655457 AAAATTAAAAATTT
1 AAAATTAAAAATTT
*
48655471 AAAATTTAAAATTT
1 AAAATTAAAAATTT
48655485 AAAA
1 AAAA
48655489 AGTAAATAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAATTAAAAATTT
Found at i:48656019 original size:19 final size:19
Alignment explanation
Indices: 48655983--48656021 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
48655973 CTACGTGGTA
48655983 ATTTAAATAATTAGAAAAT
1 ATTTAAATAATTAGAAAAT
*
48656002 ATTTATATATATTA-AAAAT
1 ATTTAAATA-ATTAGAAAAT
48656021 A
1 A
48656022 AAAAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (19 bp):
ATTTAAATAATTAGAAAAT
Found at i:48656249 original size:31 final size:30
Alignment explanation
Indices: 48656214--48656311 Score: 90
Period size: 31 Copynumber: 3.2 Consensus size: 30
48656204 GGAGCCAATG
*
48656214 ATTTGAAAGTTTAAATTTAAGTTATTGAATT
1 ATTTGAAAGTTT-TATTTAAGTTATTGAATT
** * *
48656245 ATTTGAATTTTTTTATTTAAGTCATTAAATT
1 ATTTGAA-AGTTTTATTTAAGTTATTGAATT
* *
48656276 ATTCGAAAGTATTTATTTAA-TTCATTGAACT
1 ATTTGAAAGT-TTTATTTAAGTT-ATTGAATT
48656307 ATTTG
1 ATTTG
48656312 TTTTTAAATA
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
30 2 0.04
31 47 0.90
32 3 0.06
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (30 bp):
ATTTGAAAGTTTTATTTAAGTTATTGAATT
Found at i:48657160 original size:14 final size:14
Alignment explanation
Indices: 48657143--48657175 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
48657133 TAACAACAAG
*
48657143 ATAGTATCAACATA
1 ATAGTAGCAACATA
48657157 ATAGTAGCAACATA
1 ATAGTAGCAACATA
48657171 ATAGT
1 ATAGT
48657176 GAAATTGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.27
Consensus pattern (14 bp):
ATAGTAGCAACATA
Found at i:48657580 original size:14 final size:16
Alignment explanation
Indices: 48657553--48657584 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
48657543 GTAAGGATAT
48657553 AATATAATATTTAAAA
1 AATATAATATTTAAAA
48657569 AATA-AATA-TTAAAA
1 AATATAATATTTAAAA
48657583 AA
1 AA
48657585 AACGTGGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 4 0.25
16 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AATATAATATTTAAAA
Found at i:48657585 original size:15 final size:16
Alignment explanation
Indices: 48657553--48657585 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
48657543 GTAAGGATAT
*
48657553 AATATAATATTTAAAA
1 AATATAATATTAAAAA
48657569 AATA-AATATTAAAAA
1 AATATAATATTAAAAA
48657584 AA
1 AA
48657586 ACGTGGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AATATAATATTAAAAA
Found at i:48658124 original size:21 final size:21
Alignment explanation
Indices: 48658066--48658126 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
48658056 CCATGTCTAC
48658066 TCCTTCC-TTTCTACTCTCACTT
1 TCCTTCCATTTCT-CTCTC-CTT
*
48658088 TCCTTCCTTTTC-CTCTCCTT
1 TCCTTCCATTTCTCTCTCCTT
48658108 T-CTCTCCATTTCTCTCTCC
1 TCCT-TCCATTTCTCTCTCC
48658127 CAACAACCAC
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
19 2 0.06
20 11 0.31
21 11 0.31
22 7 0.20
23 4 0.11
ACGTcount: A:0.05, C:0.44, G:0.00, T:0.51
Consensus pattern (21 bp):
TCCTTCCATTTCTCTCTCCTT
Found at i:48673969 original size:22 final size:21
Alignment explanation
Indices: 48673944--48673999 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
48673934 TTTCTTATTG
48673944 TTTTCTTTCTATTTTGCTACCA
1 TTTTCTTT-TATTTTGCTACCA
* * *
48673966 TTTTACTATTATGTTGCTACTA
1 TTTT-CTTTTATTTTGCTACCA
*
48673988 TTTTGTTTTATT
1 TTTTCTTTTATT
48674000 GTTTGGATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
21 5 0.19
22 19 0.70
23 3 0.11
ACGTcount: A:0.16, C:0.14, G:0.07, T:0.62
Consensus pattern (21 bp):
TTTTCTTTTATTTTGCTACCA
Found at i:48701441 original size:18 final size:18
Alignment explanation
Indices: 48701392--48701433 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
48701382 TAAAATTTTA
48701392 TAAAAAT-TCATAAAAATG
1 TAAAAATAT-ATAAAAATG
*
48701410 TAAACATATATAAAAATG
1 TAAAAATATATAAAAATG
48701428 -AAAAAT
1 TAAAAAT
48701434 CTAATAAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 5 0.24
18 15 0.71
19 1 0.05
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.26
Consensus pattern (18 bp):
TAAAAATATATAAAAATG
Found at i:48702075 original size:8 final size:9
Alignment explanation
Indices: 48702012--48702077 Score: 53
Period size: 9 Copynumber: 6.8 Consensus size: 9
48702002 AATGAGAACT
48702012 TTTTATAAG
1 TTTTATAAG
48702021 TTTTATAA-
1 TTTTATAAG
*
48702029 TCTTTGTAAG
1 T-TTTATAAG
*
48702039 CTTTTATAAAATT
1 -TTTTAT--AA-G
48702052 TTTTATAAG
1 TTTTATAAG
48702061 TTTTATAAG
1 TTTTATAAG
48702070 TTTATATA
1 TTT-TATA
48702078 TACTATTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
8 1 0.02
9 26 0.57
10 10 0.22
11 1 0.02
12 8 0.17
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (9 bp):
TTTTATAAG
Found at i:48702109 original size:20 final size:20
Alignment explanation
Indices: 48702085--48702123 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
48702075 ATATACTATT
48702085 TTTTTTATA-ATTTTAATAA
1 TTTTTTATATATTTTAATAA
*
48702104 TTTTTTATATTTTTTAATAA
1 TTTTTTATATATTTTAATAA
48702124 AAATATAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTTATATATTTTAATAA
Found at i:48704435 original size:18 final size:18
Alignment explanation
Indices: 48704414--48704451 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
48704404 AAATTATTTA
48704414 AAATATAAA-AAAACTAAT
1 AAATATAAATAAAA-TAAT
48704432 AAATATAAATAAAATAAT
1 AAATATAAATAAAATAAT
48704450 AA
1 AA
48704452 GAGAAACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATATAAATAAAATAAT
Found at i:48705969 original size:6 final size:6
Alignment explanation
Indices: 48705960--48705990 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
48705950 ATATTATTAT
48705960 TATAAA TATAAA TATAAA TATAAA TAATAAA
1 TATAAA TATAAA TATAAA TATAAA T-ATAAA
48705991 AAAAAGTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.79
7 5 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
TATAAA
Found at i:48706689 original size:2 final size:2
Alignment explanation
Indices: 48706684--48706722 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
48706674 TTTTTTATGT
* *
48706684 TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
48706723 TAGGTTTAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:48710243 original size:57 final size:58
Alignment explanation
Indices: 48710129--48710269 Score: 169
Period size: 57 Copynumber: 2.4 Consensus size: 58
48710119 AATTGACGGT
* *
48710129 AAAAAGGATCTAGCTCGGACGGGTGATCTTATCCTGATATAGCCCTCCCGAATAATATGTGTG
1 AAAAA-GATCTAGCCCGGACGGGTGATC-T-T-CTGATATAGCCCTCCCGAAGAATATGTG-G
48710192 AAAAAGATCTAGCCCGGACGGGTGATC-T-TGATATAGCCCTCCCGAAGAATATGTGG
1 AAAAAGATCTAGCCCGGACGGGTGATCTTCTGATATAGCCCTCCCGAAGAATATGTGG
* * *
48710248 AAAATGGATCGAGCCTGGACGG
1 AAAA-AGATCTAGCCCGGACGG
48710270 ATAATCTGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
56 5 0.07
57 40 0.56
59 1 0.01
62 21 0.29
63 5 0.07
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (58 bp):
AAAAAGATCTAGCCCGGACGGGTGATCTTCTGATATAGCCCTCCCGAAGAATATGTGG
Found at i:48710824 original size:40 final size:40
Alignment explanation
Indices: 48710679--48710883 Score: 150
Period size: 40 Copynumber: 5.1 Consensus size: 40
48710669 GTTTTCTCGG
* * *
48710679 ATTTTTGGTACTTCCTCATATGTTTTGGTAAAT-CCTCATA
1 ATTTTTGGTACTTCCTCATATTTTTTGAT-ATTCCCTCATA
* * ** **
48710719 AATTTTGGTATTTCCTCA-AGTTTTACGATATTCTTTCATA
1 ATTTTTGGTACTTCCTCATA-TTTTTTGATATTCCCTCATA
* * *
48710759 ATTTTTGGCACTTCCTCCTAGTTTTTGATATTCCCTCATA
1 ATTTTTGGTACTTCCTCATATTTTTTGATATTCCCTCATA
* *
48710799 ATTTTTGGTACATCCTCATTTTTTTTGATACTT-CCTCA-A
1 ATTTTTGGTACTTCCTCATATTTTTTGATA-TTCCCTCATA
* * * * * *
48710838 GTTTTATGGTA-TTCTTTCATAATTTTTGGTATTTCCTCATG
1 ATTTT-TGGTACTTC-CTCATATTTTTTGATATTCCCTCATA
48710879 ATTTT
1 ATTTT
48710884 CTATACATTT
Statistics
Matches: 126, Mismatches: 31, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
39 12 0.10
40 107 0.85
41 7 0.06
ACGTcount: A:0.20, C:0.18, G:0.11, T:0.51
Consensus pattern (40 bp):
ATTTTTGGTACTTCCTCATATTTTTTGATATTCCCTCATA
Found at i:48710824 original size:60 final size:60
Alignment explanation
Indices: 48710760--48710877 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 60
48710750 TCTTTCATAA
* *
48710760 TTTTTGGCACTTCCTCCTAGTTTT-TGATATTCCCTCATAATTTTTGGTACATCCTCATTT
1 TTTTTGACACTTCCT-CAAGTTTTATGATATTCCCTCATAATTTTTGGTACATCCTCATTT
* * ** **
48710820 TTTTTGATACTTCCTCAAGTTTTATGGTATTCTTTCATAATTTTTGGTATTTCCTCAT
1 TTTTTGACACTTCCTCAAGTTTTATGATATTCCCTCATAATTTTTGGTACATCCTCAT
48710878 GATTTTCTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 7 0.14
60 42 0.86
ACGTcount: A:0.18, C:0.19, G:0.10, T:0.53
Consensus pattern (60 bp):
TTTTTGACACTTCCTCAAGTTTTATGATATTCCCTCATAATTTTTGGTACATCCTCATTT
Found at i:48710869 original size:20 final size:19
Alignment explanation
Indices: 48710628--48710883 Score: 124
Period size: 20 Copynumber: 12.9 Consensus size: 19
48710618 ATAAAAATTA
* * *
48710628 GTATCCCTCACAATTTTTT
1 GTATTCCTCATAATTTTTG
*
48710647 GTATTCTCTCGTAATTTTTG
1 GTATTC-CTCATAATTTTTG
* * **
48710667 GTGTTTTCTC-GGATTTTTG
1 GT-ATTCCTCATAATTTTTG
48710686 GTACTTCCTCAT-ATGTTTTG
1 GTA-TTCCTCATAAT-TTTTG
* *
48710706 GTAAATCCTCATAAATTTTG
1 GT-ATTCCTCATAATTTTTG
* *
48710726 GTATTTCCTCA-AGTTTTACG
1 GTA-TTCCTCATAATTTT-TG
* *
48710746 ATATTCTTTCATAATTTTTG
1 GTATTC-CTCATAATTTTTG
* * *
48710766 GCACTTCCTCCTAGTTTTTG
1 GTA-TTCCTCATAATTTTTG
*
48710786 ATATTCCCTCATAATTTTTG
1 GTATT-CCTCATAATTTTTG
* **
48710806 GTACATCCTCATTTTTTTTG
1 GTA-TTCCTCATAATTTTTG
* *
48710826 ATACTTCCTCA-AGTTTTATG
1 GTA-TTCCTCATAATTTT-TG
*
48710846 GTATTCTTTCATAATTTTTG
1 GTATTC-CTCATAATTTTTG
*
48710866 GTATTTCCTCATGATTTT
1 GTA-TTCCTCATAATTTT
48710884 CTATACATTT
Statistics
Matches: 176, Mismatches: 43, Indels: 35
0.69 0.17 0.14
Matches are distributed among these distances:
19 38 0.22
20 117 0.66
21 21 0.12
ACGTcount: A:0.19, C:0.18, G:0.12, T:0.51
Consensus pattern (19 bp):
GTATTCCTCATAATTTTTG
Found at i:48710933 original size:20 final size:20
Alignment explanation
Indices: 48710897--48710954 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
48710887 TACATTTAAG
*
48710897 TTTTGGTACATTCTCATATT
1 TTTTGCTACATTCTCATATT
48710917 TTTTGCTAC-TTCATCATATT
1 TTTTGCTACATTC-TCATATT
* * *
48710937 TGTTGGTACATTATCATA
1 TTTTGCTACATTCTCATA
48710955 ATTCTCGGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.09
20 27 0.84
21 2 0.06
ACGTcount: A:0.22, C:0.16, G:0.10, T:0.52
Consensus pattern (20 bp):
TTTTGCTACATTCTCATATT
Found at i:48721548 original size:27 final size:27
Alignment explanation
Indices: 48721518--48721586 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
48721508 AAATAAAAAA
*
48721518 TTACCAAAATGT-TATAACTTTTTTTAT
1 TTACCAAAATATATATAA-TTTTTTTAT
48721545 TTACCAAAATATATATAATTTTTTTAT
1 TTACCAAAATATATATAATTTTTTTAT
48721572 TTACCAAAATATATA
1 TTACCAAAATATATA
48721587 AAAAACAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 35 0.88
28 5 0.12
ACGTcount: A:0.41, C:0.10, G:0.01, T:0.48
Consensus pattern (27 bp):
TTACCAAAATATATATAATTTTTTTAT
Found at i:48721599 original size:8 final size:9
Alignment explanation
Indices: 48721586--48721625 Score: 57
Period size: 8 Copynumber: 4.7 Consensus size: 9
48721576 CAAAATATAT
48721586 AAAAAACA-
1 AAAAAACAG
48721594 AAAAAACAG
1 AAAAAACAG
*
48721603 AAAAAATA-
1 AAAAAACAG
48721611 AAAAAACAG
1 AAAAAACAG
48721620 AAAAAA
1 AAAAAA
48721626 AAACCTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 15 0.54
9 13 0.46
ACGTcount: A:0.85, C:0.07, G:0.05, T:0.03
Consensus pattern (9 bp):
AAAAAACAG
Found at i:48721606 original size:17 final size:17
Alignment explanation
Indices: 48721586--48721625 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
48721576 CAAAATATAT
48721586 AAAAAACAAAAAAACAG
1 AAAAAACAAAAAAACAG
*
48721603 AAAAAATAAAAAAACAG
1 AAAAAACAAAAAAACAG
48721620 AAAAAA
1 AAAAAA
48721626 AAACCTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.85, C:0.07, G:0.05, T:0.03
Consensus pattern (17 bp):
AAAAAACAAAAAAACAG
Found at i:48721699 original size:27 final size:27
Alignment explanation
Indices: 48721669--48721735 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
48721659 AGGGAAGCAG
48721669 GTTGGCGGCACCAAACAAGGGATCCCT
1 GTTGGCGGCACCAAACAAGGGATCCCT
****
48721696 GTTGGCGGCACCAGTGGAGGGATCCCT
1 GTTGGCGGCACCAAACAAGGGATCCCT
48721723 GTTGGCGGCACCA
1 GTTGGCGGCACCA
48721736 CCCTTGAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.16
Consensus pattern (27 bp):
GTTGGCGGCACCAAACAAGGGATCCCT
Found at i:48721805 original size:18 final size:18
Alignment explanation
Indices: 48721782--48721956 Score: 61
Period size: 18 Copynumber: 9.8 Consensus size: 18
48721772 GAAGGAGAGG
48721782 GGAAGAAGAAGAAAGGAA
1 GGAAGAAGAAGAAAGGAA
48721800 GGAAGAAAGAA-AAA-GAA
1 GGAAG-AAGAAGAAAGGAA
*
48721817 GGAA-AAG--GAAATGAGA
1 GGAAGAAGAAGAAAGGA-A
48721833 GGAAAGAAAGAA-AAA-GAA
1 GG-AAG-AAGAAGAAAGGAA
*
48721851 GGAAAGAA-AAGGAAAGGGGA
1 GG-AAGAAGAA-GAAA-GGAA
*
48721871 GGAAAGAAAGAA-AAA-TAA
1 GG-AAG-AAGAAGAAAGGAA
48721889 GGCAAGAA-AAGGAAAGG-A
1 GG-AAGAAGAA-GAAAGGAA
* * * *
48721907 GAAGAGAAAAAAAAAAGAA
1 GGA-AGAAGAAGAAAGGAA
* *
48721926 AGAAGAAGAGGAAAGGAA
1 GGAAGAAGAAGAAAGGAA
*
48721944 GGAA-AAAAAGAAA
1 GGAAGAAGAAGAAA
48721957 ATAACATAAT
Statistics
Matches: 119, Mismatches: 17, Indels: 43
0.66 0.09 0.24
Matches are distributed among these distances:
14 3 0.03
15 5 0.04
16 7 0.06
17 21 0.18
18 51 0.43
19 14 0.12
20 14 0.12
21 2 0.02
22 2 0.02
ACGTcount: A:0.66, C:0.01, G:0.33, T:0.01
Consensus pattern (18 bp):
GGAAGAAGAAGAAAGGAA
Found at i:48721855 original size:14 final size:14
Alignment explanation
Indices: 48721804--48721860 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 14
48721794 AAGGAAGGAA
48721804 GAAAGAAAAAGAAG
1 GAAAGAAAAAGAAG
*
48721818 GAAAAGGAAATGAGAGGAAA
1 G-AAA-GAAA--A-A-GAAG
48721838 GAAAGAAAAAGAAG
1 GAAAGAAAAAGAAG
48721852 GAAAGAAAA
1 GAAAGAAAA
48721861 GGAAAGGGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
14 13 0.37
15 4 0.11
16 5 0.14
18 5 0.14
19 4 0.11
20 4 0.11
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (14 bp):
GAAAGAAAAAGAAG
Found at i:48721860 original size:38 final size:37
Alignment explanation
Indices: 48721782--48721957 Score: 190
Period size: 38 Copynumber: 4.9 Consensus size: 37
48721772 GAAGGAGAGG
48721782 GGAAGAAGAA-GAAAGGA-AGG-AAGAAAGAAAAAGAA
1 GGAAGAA-AAGGAAAGGAGAGGAAAGAAAGAAAAAGAA
*
48721817 -G--GAAAAGGAAATGAGAGGAAAGAAAGAAAAAGAA
1 GGAAGAAAAGGAAAGGAGAGGAAAGAAAGAAAAAGAA
* *
48721851 GGAAAGAAAAGGAAAGGGGAGGAAAGAAAGAAAAATAA
1 GG-AAGAAAAGGAAAGGAGAGGAAAGAAAGAAAAAGAA
*
48721889 GGCAAGAAAAGGAAAGGAGAAGAGAA-AAA-AAAAAGAA
1 GG-AAGAAAAGGAAAGGAGAGGA-AAGAAAGAAAAAGAA
* * *
48721926 AGAAGAAGAGGAAAGGA-AGGAAAAAAAGAAAA
1 GGAAGAAAAGGAAAGGAGAGGAAAGAAAGAAAA
48721958 TAACATAATT
Statistics
Matches: 120, Mismatches: 11, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
31 2 0.02
32 9 0.08
33 3 0.03
34 18 0.15
35 7 0.06
36 18 0.15
37 8 0.07
38 53 0.44
39 2 0.02
ACGTcount: A:0.66, C:0.01, G:0.32, T:0.01
Consensus pattern (37 bp):
GGAAGAAAAGGAAAGGAGAGGAAAGAAAGAAAAAGAA
Found at i:48721866 original size:10 final size:10
Alignment explanation
Indices: 48721804--48721904 Score: 63
Period size: 10 Copynumber: 10.5 Consensus size: 10
48721794 AAGGAAGGAA
*
48721804 GAAAGAAAAA
1 GAAAGAAAAG
*
48721814 GAAGGAAAAG
1 GAAAGAAAAG
*
48721824 GAAATG-AGAG
1 GAAA-GAAAAG
48721834 GAAAG-AAA-
1 GAAAGAAAAG
48721842 GAAA-AAGAAG
1 GAAAGAA-AAG
48721852 GAAAGAAAAG
1 GAAAGAAAAG
***
48721862 GAAAGGGGAG
1 GAAAGAAAAG
48721872 GAAAG-AAA-
1 GAAAGAAAAG
48721880 GAAA-AATAAG
1 GAAAGAA-AAG
*
48721890 GCAAGAAAAG
1 GAAAGAAAAG
48721900 GAAAG
1 GAAAG
48721905 GAGAAGAGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
8 10 0.14
9 8 0.11
10 47 0.67
11 5 0.07
ACGTcount: A:0.64, C:0.01, G:0.33, T:0.02
Consensus pattern (10 bp):
GAAAGAAAAG
Found at i:48723219 original size:18 final size:18
Alignment explanation
Indices: 48723193--48723230 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
48723183 ATCCCAATGA
* *
48723193 TCGCCACCACCTTCTTCT
1 TCGCAACCACATTCTTCT
48723211 TCGCAACCACATTCTTCT
1 TCGCAACCACATTCTTCT
48723229 TC
1 TC
48723231 ACCACCAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.16, C:0.45, G:0.05, T:0.34
Consensus pattern (18 bp):
TCGCAACCACATTCTTCT
Found at i:48723237 original size:18 final size:18
Alignment explanation
Indices: 48723196--48723237 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
48723186 CCAATGATCG
* *
48723196 CCACCACCTTCTTCTTCG
1 CCACCACATTCTTCTTCA
*
48723214 CAACCACATTCTTCTTCA
1 CCACCACATTCTTCTTCA
48723232 CCACCA
1 CCACCA
48723238 ACCATATCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (18 bp):
CCACCACATTCTTCTTCA
Found at i:48724358 original size:11 final size:11
Alignment explanation
Indices: 48724342--48724367 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
48724332 TAGAAGAGAC
48724342 GAAACAGGGGA
1 GAAACAGGGGA
48724353 GAAACAGGGGA
1 GAAACAGGGGA
48724364 GAAA
1 GAAA
48724368 GAAGAAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAACAGGGGA
Found at i:48724379 original size:29 final size:29
Alignment explanation
Indices: 48724333--48724389 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
48724323 GAAACAGAAT
* *
48724333 AGAAGAGACGAAACAGGGGAGAAACAGGGG
1 AGAAGAGAAGAAAAAGGGGA-AAACAGGGG
*
48724363 AGAA-AGAAGAAAAAGGGGAAAATAGGG
1 AGAAGAGAAGAAAAAGGGGAAAACAGGG
48724390 TTTTTGAAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 7 0.29
29 13 0.54
30 4 0.17
ACGTcount: A:0.53, C:0.05, G:0.40, T:0.02
Consensus pattern (29 bp):
AGAAGAGAAGAAAAAGGGGAAAACAGGGG
Found at i:48725043 original size:3 final size:3
Alignment explanation
Indices: 48725016--48725065 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
48725006 GTGAGGTAAG
* * *
48725016 TAT TAA TAT TAG TAT TAA T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
48725063 TAT
1 TAT
48725066 GAGTGGGAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
2 1 0.03
3 39 0.98
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:48726872 original size:3 final size:3
Alignment explanation
Indices: 48726864--48726901 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
48726854 AGTAACATCT
*
48726864 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAC TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
48726902 CTATAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:48728593 original size:30 final size:31
Alignment explanation
Indices: 48728554--48728615 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
48728544 GTTATTAATT
* *
48728554 ATAAAAAAAATTATTATTTTAAATA-TTTAAA
1 ATAAAAAAAATT-GTAATTTAAATAGTTTAAA
48728585 ATAAAAAAAATTGTAATTTAAATAGTTTAAA
1 ATAAAAAAAATTGTAATTTAAATAGTTTAAA
48728616 CATTTTGACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 10 0.36
31 18 0.64
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (31 bp):
ATAAAAAAAATTGTAATTTAAATAGTTTAAA
Found at i:48731346 original size:117 final size:117
Alignment explanation
Indices: 48731001--48731922 Score: 1201
Period size: 117 Copynumber: 8.1 Consensus size: 117
48730991 TGACGTTGAT
* ** * * * * *
48731001 ATCTTCATCGCTTTCAAAGAGTTCAAATTTCAAGATTCTACCTATAGATGTGCCTATTTCTTCGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
* *
48731066 CGAGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCAAC
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCGAC
48731118 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCC---T--T-CGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
* * * * **
48731177 CAGGACCTAGTGGAAGTACATCAGATCCGCCTCCTCCATCTTTGATATCGAC
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCGAC
* *
48731229 ATCTTCACCACTTTTGAAGAGTTCAAATTTTAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
* *
48731294 CAGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTTAATATCG--
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCGAC
48731344 A----CATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTG------CCTCCGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
** **
48731399 CAAGACCTAGTGGAAGTACATCAGATCCACCTCCTCCATAGTCAATATCGAC
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCGAC
* * ** * *
48731451 ATCTTCATCACTTTTGAAGAGTTCAAATTCCAGGATTTTACCTACATATATGCCTATTCCTCAGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
*
48731516 CGGGACCTAGTGGAAGCACATCAGATCCACCTCCTCCACCGTCAATATCGAC
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCGAC
* *
48731568 ATCTTCATCACTTTTGAAGAGTTCAAATTCCAGGATTCTACCTACAGGTGTGCCTATTCCTCTGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
*
48731633 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCAAC
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCGAC
* * *
48731685 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAAGATTCTACCTACATGTATGCCTATTCCTCCGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
* *
48731750 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCCCCACCGTTAATA-CTG--
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATC-GAC
* * *
48731800 A----CATCACTTTTGAAGAGTTCAAATTTCAAGATTTTACCTACAGGTGTGCCTATTCCTCCAT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
* * * * * * * *
48731861 CGGGACCTAATGAAAGTACATCATATCCACCACCTCCATCATTAATATCAAC
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCGAC
*
48731913 ATCTTTATCA
1 ATCTTCATCA
48731923 ATTTCAAAAA
Statistics
Matches: 714, Mismatches: 65, Indels: 52
0.86 0.08 0.06
Matches are distributed among these distances:
105 53 0.07
107 1 0.00
111 282 0.39
112 2 0.00
113 1 0.00
114 2 0.00
115 2 0.00
116 2 0.00
117 369 0.52
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (117 bp):
ATCTTCATCACTTTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCGAC
Found at i:48731819 original size:228 final size:223
Alignment explanation
Indices: 48731001--48731922 Score: 1186
Period size: 228 Copynumber: 4.0 Consensus size: 223
48730991 TGACGTTGAT
* ** * * * *
48731001 ATCTTCATCGCTTTCAAAGAGTTCAAATTTCAAGATTCTACCTATA-GATGTGCCTATTTCTTCG
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAAGATTCTACCTACATG-TATGCCTATTCCTCCG
* * *
48731065 TCGAGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTCAATATCAACATCTTCATCACT
65 TCGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTTAATATC--GA----CATCACT
48731130 TTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCT-TCGTCAGGACCTAGTGGAAGT
124 TTTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTCTCGTCAGGACCTAGTGGAAGT
* * ** *
48731194 ACATCAGATCCGCCTCCTCCATCTTTGATATCGAC
189 ACATCAGATCCACCTCCTCCATCGTCAATATCAAC
* * * * *
48731229 ATCTTCACCACTTTTGAAGAGTTCAAATTTTAGGATTCTACCTACAGGTGTGCCTATTCCTCCGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAAGATTCTACCTACATGTATGCCTATTCCTCCGT
*
48731294 CAGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTTAATATCGACATCACTTTTGAAG
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTTAATATCGACATCACTTTTGAAG
*
48731359 AGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTC-CGTCAAGACCTAGTGGAAGTACATCAG
131 AGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTCTCGTCAGGACCTAGTGGAAGTACATCAG
* *
48731423 ATCCACCTCCTCCATAGTCAATATCGAC
196 ATCCACCTCCTCCATCGTCAATATCAAC
* * * * *
48731451 ATCTTCATCACTTTTGAAGAGTTCAAATTCCAGGATTTTACCTACATATATGCCTATTCCTCAGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAAGATTCTACCTACATGTATGCCTATTCCTCCGT
* *
48731516 CGGGACCTAGTGGAAGCACATCAGATCCACCTCCTCCACCGTCAATATCGACATCTTCATCACTT
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTTAATATCG--A----CATCACTT
* *
48731581 TTGAAGAGTTCAAATTCCAGGATTCTACCTACAGGTGTGCCTATTCCTCTGTCGGGACCTAGTGG
125 TTGAAGAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCC---T-CTC-GTCAGGACCTAGTGG
*
48731646 AAGTACATCAGATCCACCTCCTCCACCGTCAATATCAAC
185 AAGTACATCAGATCCACCTCCTCCATCGTCAATATCAAC
48731685 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAAGATTCTACCTACATGTATGCCTATTCCTCCGT
1 ATCTTCATCACTTTTGAAGAGTTCAAATTTCAAGATTCTACCTACATGTATGCCTATTCCTCCGT
*
48731750 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCCCCACCGTTAATA-CTGACATCACTTTTGAA
66 CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTTAATATC-GACATCACTTTTGAA
* * * * * *
48731814 GAGTTCAAATTTCAAGATTTTACCTACAGGTGTGCCTATTCCTCCATCGGGACCTAATGAAAGTA
130 GAGTTCAAATTTCAGGATTCTACCTACAGGTGTGCC---T-CT-CGTCAGGACCTAGTGGAAGTA
* * * *
48731879 CATCATATCCACCACCTCCATCATTAATATCAAC
190 CATCAGATCCACCTCCTCCATCGTCAATATCAAC
*
48731913 ATCTTTATCA
1 ATCTTCATCA
48731923 ATTTCAAAAA
Statistics
Matches: 622, Mismatches: 56, Indels: 32
0.88 0.08 0.05
Matches are distributed among these distances:
222 203 0.33
224 1 0.00
226 1 0.00
228 256 0.41
229 2 0.00
231 1 0.00
232 2 0.00
233 2 0.00
234 154 0.25
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (223 bp):
ATCTTCATCACTTTTGAAGAGTTCAAATTTCAAGATTCTACCTACATGTATGCCTATTCCTCCGT
CGGGACCTAGTGGAAGTACATCAGATCCACCTCCTCCACCGTTAATATCGACATCACTTTTGAAG
AGTTCAAATTTCAGGATTCTACCTACAGGTGTGCCTCTCGTCAGGACCTAGTGGAAGTACATCAG
ATCCACCTCCTCCATCGTCAATATCAAC
Found at i:48740917 original size:14 final size:14
Alignment explanation
Indices: 48740898--48740924 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48740888 TAAATCTGGT
48740898 ATAAATATATTTAA
1 ATAAATATATTTAA
48740912 ATAAATATATTTA
1 ATAAATATATTTA
48740925 TTTTTTAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAAATATATTTAA
Done.