Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 172 of 172
Found at i:51336854 original size:26 final size:26
Alignment explanation
Indices: 51336824--51336885 Score: 115
Period size: 26 Copynumber: 2.4 Consensus size: 26
51336814 AATTTGGGCT
51336824 TATTGGGCTGCTTGGGCTGGGCAAAA
1 TATTGGGCTGCTTGGGCTGGGCAAAA
*
51336850 TATTGGGCTGCTTGGGCTGGGCGAAA
1 TATTGGGCTGCTTGGGCTGGGCAAAA
51336876 TATTGGGCTG
1 TATTGGGCTG
51336886 TACACCATTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.16, C:0.15, G:0.40, T:0.29
Consensus pattern (26 bp):
TATTGGGCTGCTTGGGCTGGGCAAAA
Found at i:51347424 original size:56 final size:56
Alignment explanation
Indices: 51347307--51347411 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
51347297 TCTTGGTGCT
**
51347307 TAATTACAAATATATTAAAATTATTAATTAAAAATAAAAAATATTTTTTAAAATAC
1 TAATTACAAATATATTAAAATTATTAATTAAAAATAAAAAATATAATTTAAAATAC
* * **
51347363 TAATTACAAATAT-TTAATAATTA-TATTTAAATATTTAAAATATAATTTA
1 TAATTACAAATATATTAA-AATTATTAATTAAAAATAAAAAATATAATTTA
51347412 TACATTCTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 24 0.57
56 18 0.43
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (56 bp):
TAATTACAAATATATTAAAATTATTAATTAAAAATAAAAAATATAATTTAAAATAC
Found at i:51347718 original size:13 final size:14
Alignment explanation
Indices: 51347702--51347734 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
51347692 TCCACATCAC
51347702 TTTTTAAAAAT-AT
1 TTTTTAAAAATAAT
*
51347715 TTTTCAAAAATAAT
1 TTTTTAAAAATAAT
51347729 TTTTTA
1 TTTTTA
51347735 CCGCACTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
TTTTTAAAAATAAT
Found at i:51347731 original size:26 final size:26
Alignment explanation
Indices: 51347702--51347762 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
51347692 TCCACATCAC
* *
51347702 TTTTTAAAAATATTTTTCAAAAATAA
1 TTTTTAAAAACACTTTTCAAAAATAA
* ***
51347728 TTTTTTACCGCACTTTTCAAAAATAA
1 TTTTTAAAAACACTTTTCAAAAATAA
51347754 TTTTTAAAA
1 TTTTTAAAA
51347763 GCAATGAACA
Statistics
Matches: 26, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.46
Consensus pattern (26 bp):
TTTTTAAAAACACTTTTCAAAAATAA
Found at i:51348830 original size:6 final size:6
Alignment explanation
Indices: 51348819--51348843 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
51348809 CGGAGTTGAT
51348819 GTCGGA GTCGGA GTCGGA GTCGGA G
1 GTCGGA GTCGGA GTCGGA GTCGGA G
51348844 AGCCCAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.52, T:0.16
Consensus pattern (6 bp):
GTCGGA
Found at i:51355993 original size:11 final size:11
Alignment explanation
Indices: 51355977--51356001 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51355967 CGGTTAGCAG
51355977 TTTTTAAATTA
1 TTTTTAAATTA
51355988 TTTTTAAATTA
1 TTTTTAAATTA
51355999 TTT
1 TTT
51356002 ATATATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTAAATTA
Found at i:51356104 original size:21 final size:21
Alignment explanation
Indices: 51356078--51356119 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
51356068 ATAAAAAACC
51356078 GAATCAAAATCGTTTAATTAA
1 GAATCAAAATCGTTTAATTAA
51356099 GAATCAAAATCGTTTAATTAA
1 GAATCAAAATCGTTTAATTAA
51356120 TTTTTTAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.33
Consensus pattern (21 bp):
GAATCAAAATCGTTTAATTAA
Found at i:51359246 original size:18 final size:18
Alignment explanation
Indices: 51359220--51359254 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
51359210 TTCGGATTGA
* *
51359220 CCATGGCCACCTTATTAG
1 CCATCGCCACCCTATTAG
51359238 CCATCGCCACCCTATTA
1 CCATCGCCACCCTATTA
51359255 TCGACTGTAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.40, G:0.11, T:0.26
Consensus pattern (18 bp):
CCATCGCCACCCTATTAG
Found at i:51374142 original size:60 final size:60
Alignment explanation
Indices: 51374072--51374187 Score: 187
Period size: 60 Copynumber: 1.9 Consensus size: 60
51374062 AAGACTAATA
* *
51374072 TATATCACAAAAATAGTATACATATTTCCTCCAAGTTTTTCAGTGTGTAAACTTAAAATG
1 TATATCACAAAAACAGTATACATATTTCCTCCAAGTTTATCAGTGTGTAAACTTAAAATG
* * *
51374132 TATATCACAAACACAGTATACATATTTTCTCCGAGTTTATCAGTGTGTAAACTTAA
1 TATATCACAAAAACAGTATACATATTTCCTCCAAGTTTATCAGTGTGTAAACTTAA
51374188 CTATTTAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.36
Consensus pattern (60 bp):
TATATCACAAAAACAGTATACATATTTCCTCCAAGTTTATCAGTGTGTAAACTTAAAATG
Found at i:51376628 original size:21 final size:21
Alignment explanation
Indices: 51376604--51376644 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
51376594 TGGATTAGTA
51376604 TTTTATATGAATATTGTAATT
1 TTTTATATGAATATTGTAATT
*
51376625 TTTTGTATGAATATTGTAAT
1 TTTTATATGAATATTGTAAT
51376645 ATTATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (21 bp):
TTTTATATGAATATTGTAATT
Found at i:51376647 original size:8 final size:8
Alignment explanation
Indices: 51376634--51376723 Score: 56
Period size: 8 Copynumber: 10.4 Consensus size: 8
51376624 TTTTTGTATG
51376634 AATATTGT
1 AATATTGT
*
51376642 AATATTAT
1 AATATTGT
*
51376650 AATTTTGCAT
1 AATATTG--T
51376660 GAATATTGT
1 -AATATTGT
51376669 AATATTGT
1 AATATTGT
51376677 AAT-TTGTAT
1 AATATTG--T
51376686 GAATATTGT
1 -AATATTGT
* * *
51376695 AATGTCGGG
1 AATAT-TGT
51376704 ATATATTGT
1 A-ATATTGT
51376713 AATATTGT
1 AATATTGT
51376721 AAT
1 AAT
51376724 TTTTTGTATG
Statistics
Matches: 63, Mismatches: 10, Indels: 18
0.69 0.11 0.20
Matches are distributed among these distances:
7 3 0.05
8 37 0.59
9 7 0.11
10 7 0.11
11 9 0.14
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.47
Consensus pattern (8 bp):
AATATTGT
Found at i:51376650 original size:61 final size:61
Alignment explanation
Indices: 51376542--51376656 Score: 146
Period size: 61 Copynumber: 1.9 Consensus size: 61
51376532 GAATATTGTA
* * *
51376542 ATTTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATTTATAGTTTTGGATTAGT
1 ATTTTATATGAATATTGTAATTATTTTATAATGAAATTTGTATTTATAATTTTGGATTAGT
*
51376603 ATTTTATATGAATATTGTAATT-TTTTGT-ATG-AATATTGTAATATTATAATTTTG
1 ATTTTATATGAATATTGTAATTATTTTATAATGAAAT-TTGT-AT-TTATAATTTTG
51376657 CATGAATATT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
58 3 0.06
59 6 0.13
60 7 0.15
61 31 0.66
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (61 bp):
ATTTTATATGAATATTGTAATTATTTTATAATGAAATTTGTATTTATAATTTTGGATTAGT
Found at i:51376655 original size:27 final size:27
Alignment explanation
Indices: 51376625--51376697 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
51376615 TATTGTAATT
51376625 TTTTGTATGAATATTGTAATATTATAA
1 TTTTGTATGAATATTGTAATATTATAA
* *
51376652 TTTTGCATGAATATTGTAATATTGTAA
1 TTTTGTATGAATATTGTAATATTATAA
51376679 -TTTGTATGAATATTGTAAT
1 TTTTGTATGAATATTGTAAT
51376698 GTCGGGATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
26 18 0.42
27 25 0.58
ACGTcount: A:0.34, C:0.01, G:0.14, T:0.51
Consensus pattern (27 bp):
TTTTGTATGAATATTGTAATATTATAA
Found at i:51377002 original size:38 final size:39
Alignment explanation
Indices: 51376960--51377042 Score: 141
Period size: 38 Copynumber: 2.2 Consensus size: 39
51376950 AAAAAGTCAG
*
51376960 TTATAATTAAACTTTTAATAAAATAATTTTTTA-TTTTT
1 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTTT
*
51376998 TTATAATTAAACTTTTAATAAAATGATTTTTAATTTTTT
1 TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTTT
51377037 TTATAA
1 TTATAA
51377043 ACTTTATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
38 31 0.74
39 11 0.26
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (39 bp):
TTATAATTAAACTTTTAATAAAATAATTTTTAATTTTTT
Found at i:51377168 original size:60 final size:60
Alignment explanation
Indices: 51377075--51377196 Score: 165
Period size: 60 Copynumber: 2.0 Consensus size: 60
51377065 ATATTAAACT
* * * * *
51377075 AAACACAACAACTTATAGCTTAATCCCAAATTACTAATAAATTAAATT-TTAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATT-AATTATAAAATAATTAC
* *
51377135 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
1 AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATTAATTATAAAATAATTAC
51377195 AA
1 AA
51377197 TATTCATACA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 4 0.07
60 50 0.93
ACGTcount: A:0.54, C:0.15, G:0.01, T:0.30
Consensus pattern (60 bp):
AAACACAAAAACTTATAACATAATCCCAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:51377261 original size:19 final size:19
Alignment explanation
Indices: 51377237--51377330 Score: 92
Period size: 19 Copynumber: 5.1 Consensus size: 19
51377227 ATATCCCGAC
51377237 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
*
51377256 ATTACAA-AAT--TACAATA
1 ATTACAATATTCATACAA-A
* *
51377273 TTCATACAATATT-AT--AAT
1 AT--TACAATATTCATACAAA
51377291 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
51377310 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
51377329 AT
1 AT
51377331 ACTAATCCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
16 14 0.23
17 4 0.07
18 3 0.05
19 37 0.61
20 2 0.03
21 1 0.02
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (19 bp):
ATTACAATATTCATACAAA
Found at i:51377273 original size:27 final size:27
Alignment explanation
Indices: 51377237--51377492 Score: 150
Period size: 27 Copynumber: 9.8 Consensus size: 27
51377227 ATATCCCGAC
51377237 ATTACAATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTACAAA
* * *
51377264 ATTACAATATTCATACAATATTATAAT
1 ATTACAATATTCATACAAAATTACAAA
51377291 ATTACAATATTCATACAAAATTACAATA
1 ATTACAATATTCATACAAAATTACAA-A
* * * * * *
51377319 TTCATACAAAATACTAATCCAAAACTA-TAA
1 AT--TAC--AATATTCATACAAAATTACAAA
* *
51377349 ATATA-AAT-TTAATTATAAAA-T----A
1 AT-TACAATATTCA-TACAAAATTACAAA
*
51377371 ATTACAATATTCATACAAAAAATTACAAT
1 ATTACAATATTCATAC--AAAATTACAAA
* * *
51377400 ATTACAATA-T-AT-C------CCGAC
1 ATTACAATATTCATACAAAATTACAAA
51377418 ATTACAATATTCATACAAAATTACAAA
1 ATTACAATATTCATACAAAATTACAAA
* * *
51377445 ATTACAATATTCATACAAAGTTATAAT
1 ATTACAATATTCATACAAAATTACAAA
51377472 ATTACAATATTCATACAAAAT
1 ATTACAATATTCATACAAAAT
51377493 ACTAATCCAA
Statistics
Matches: 176, Mismatches: 29, Indels: 48
0.70 0.11 0.19
Matches are distributed among these distances:
18 11 0.06
19 1 0.01
20 2 0.01
21 3 0.02
22 8 0.05
23 3 0.02
24 4 0.02
25 5 0.03
26 9 0.05
27 96 0.55
28 2 0.01
29 12 0.07
30 5 0.03
31 1 0.01
32 14 0.08
ACGTcount: A:0.52, C:0.14, G:0.01, T:0.33
Consensus pattern (27 bp):
ATTACAATATTCATACAAAATTACAAA
Found at i:51377293 original size:8 final size:8
Alignment explanation
Indices: 51377250--51377320 Score: 52
Period size: 8 Copynumber: 8.1 Consensus size: 8
51377240 ACAATATTCA
*
51377250 TACAAAAT
1 TACAATAT
*
51377258 TACAAAAT
1 TACAATAT
51377266 TACAATATT
1 TACAATA-T
51377275 CATACAATAT
1 --TACAATAT
*
51377285 TATAATAT
1 TACAATAT
51377293 TACAATATT
1 TACAATA-T
*
51377302 CATACAAAAT
1 --TACAATAT
51377312 TACAATAT
1 TACAATAT
51377320 T
1 T
51377321 CATACAAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
8 35 0.67
9 2 0.04
10 2 0.04
11 13 0.25
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (8 bp):
TACAATAT
Found at i:51377515 original size:54 final size:57
Alignment explanation
Indices: 51377418--51377558 Score: 130
Period size: 54 Copynumber: 2.4 Consensus size: 57
51377408 ATATCCCGAC
* * ** *
51377418 ATTACAATATTCATACAAAATTACAAAATTACAATATTCATAC-AA-AGTTAT-AAT-
1 ATTACAATATTCATACAAAA-TACAAAATCAAAATATAAATACAAATAATTATAAATA
*
51377472 ATTACAATATTCATACAAAATAC-TAATCCAAAACTATAAATACAAATTTAATTATAAAATA
1 ATTACAATATTCATACAAAATACAAAAT-CAAAA-TATAAATACAAA--TAATTAT-AAATA
51377533 ATTACAATATTCATACAAAATTACAA
1 ATTACAATATTCATACAAAA-TACAA
51377559 TATTCATTGG
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
52 3 0.04
53 6 0.09
54 27 0.39
55 2 0.03
58 5 0.07
60 3 0.04
61 20 0.29
62 3 0.04
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (57 bp):
ATTACAATATTCATACAAAATACAAAATCAAAATATAAATACAAATAATTATAAATA
Found at i:51377565 original size:181 final size:180
Alignment explanation
Indices: 51377173--51377518 Score: 565
Period size: 181 Copynumber: 1.9 Consensus size: 180
51377163 AATTACTAAC
*
51377173 AAATT-AATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACCATATATCCCGAC
1 AAATTAAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAATATATCCCGAC
51377237 ATTACAATATTCATACAAAATTACAAAATTACAATATTCATACAATATTATAATATTACAATATT
66 ATTACAATATTCATACAAAATTACAAAATTACAATATTCATACAATATTATAATATTACAATATT
* * *
51377302 CATACAAAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATAT
131 CATACAAAATTACAATATCCAAACAAAATACAAAT-CAAAACTATAAATAT
*
51377353 AAATTTAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAATATATCCCGAC
1 AAATTAAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAATATATCCCGAC
51377418 ATTACAATATTCATACAAAATTACAAAATTACAATATTCATACAA-AGTTATAATATTACAATAT
66 ATTACAATATTCATACAAAATTACAAAATTACAATATTCATACAATA-TTATAATATTACAATAT
*
51377482 TCATACAAAA-TACTA-ATCCAAAACTATAAATACAAAT
130 TCATACAAAATTACAATATCC-AAAC-A-AAATACAAAT
51377519 TTAATTATAA
Statistics
Matches: 156, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
179 3 0.02
180 13 0.08
181 131 0.84
182 9 0.06
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.32
Consensus pattern (180 bp):
AAATTAAATTATAAAATAATTACAATATTCATACAAAAAATTACAATATTACAATATATCCCGAC
ATTACAATATTCATACAAAATTACAAAATTACAATATTCATACAATATTATAATATTACAATATT
CATACAAAATTACAATATCCAAACAAAATACAAATCAAAACTATAAATAT
Found at i:51378507 original size:37 final size:37
Alignment explanation
Indices: 51378446--51378629 Score: 309
Period size: 37 Copynumber: 5.0 Consensus size: 37
51378436 TACGTATGAT
*
51378446 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
* *
51378481 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
51378518 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
51378555 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
51378592 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
51378629 C
1 C
51378630 GAAGCTATCA
Statistics
Matches: 141, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.06
36 4 0.03
37 128 0.91
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:51378671 original size:52 final size:53
Alignment explanation
Indices: 51378603--51378704 Score: 152
Period size: 52 Copynumber: 1.9 Consensus size: 53
51378593 ACTTATCACT
* *
51378603 TTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT-CACTTATCACTTTCCAC
1 TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATACACTTATCACTTTCCAC
* *
51378655 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTATACCACTTATCACTTT
1 TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATA-CACTTATCACTTT
51378705 GTCACTTGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 31 0.70
54 13 0.30
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (53 bp):
TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATACACTTATCACTTTCCAC
Found at i:51381899 original size:49 final size:48
Alignment explanation
Indices: 51381844--51382038 Score: 291
Period size: 49 Copynumber: 4.0 Consensus size: 48
51381834 TTCGTTTTCT
* *
51381844 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACAAATCACATAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACAAATCACATAC
* *
51381893 CGATGCCATAGCCCAGCTATGGTCTTACACGAAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACACG-AATCACAAATCACATAC
* *
51381942 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACTTAC
1 CGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACAAATCACATAC
51381991 CGATGCCATAGCCCAGCTATGGTCTTACACAGAATCACATAATCACAT
1 CGATGCCATAGCCCAGCTATGGTCTTACAC-GAATCACA-AATCACAT
51382039 GTTCACATGT
Statistics
Matches: 136, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
49 129 0.95
50 7 0.05
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (48 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACAAATCACATAC
Found at i:51383354 original size:37 final size:37
Alignment explanation
Indices: 51383293--51383659 Score: 618
Period size: 37 Copynumber: 10.0 Consensus size: 37
51383283 TACGTATGAT
*
51383293 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
* *
51383328 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
*
51383365 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
51383402 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
51383439 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
51383476 CAAC-TATCACTTTGT-TCTTGATCAGATAAGTGTAGC
1 C-ACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
51383512 CACTTATCAC-TTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
* *
51383548 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
51383585 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
* *
51383622 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGC
1 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
51383659 C
1 C
51383660 GAAGCTATTA
Statistics
Matches: 315, Mismatches: 11, Indels: 10
0.94 0.03 0.03
Matches are distributed among these distances:
35 15 0.05
36 63 0.20
37 235 0.75
38 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
Found at i:51383605 original size:183 final size:183
Alignment explanation
Indices: 51383297--51383659 Score: 629
Period size: 183 Copynumber: 2.0 Consensus size: 183
51383287 TATGATCACT
*
51383297 TATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTTTCTTGATCAGATAAGTGT
1 TATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCTCTTGATCAGATAAGTGT
* **
51383362 AGCCACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCA
66 AGCCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCA
* *
51383427 GATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCCAAC
131 GATAAGTGTAGCCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAC
* * *
51383480 TATCACTTTGTTCTTGATCAGATAAGTGTAGCCACTTATCAC-TTGTCTCTTGATCAGATAAGTG
1 TATCAC-TTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCTCTTGATCAGATAAGTG
51383544 TAGCCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATC
65 TAGCCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATC
51383609 AGATAAGTGTAGCCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCC
130 AGATAAGTGTAGCCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCC
51383660 GAAGCTATTA
Statistics
Matches: 170, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
183 138 0.81
184 32 0.19
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (183 bp):
TATCACTTGTCCCTGATCAGATAAGTGTAGCCACCTATCACTTTGTCTCTTGATCAGATAAGTGT
AGCCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCCACTTATCACTTTGTCTCTTGATCA
GATAAGTGTAGCCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAC
Found at i:51383674 original size:46 final size:46
Alignment explanation
Indices: 51383621--51383746 Score: 144
Period size: 52 Copynumber: 2.6 Consensus size: 46
51383611 ATAAGTGTAG
*
51383621 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTA
1 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
** * *
51383667 TTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTA
1 CCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
*
51383719 CCACTTATCACTTTATCACTTGATCAGA
1 CCACTTATCACTTTGTCACTTGATCAGA
51383747 AGTACTCAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
46 24 0.36
48 1 0.02
50 1 0.02
52 40 0.61
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (46 bp):
CCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTA
Found at i:51383689 original size:52 final size:52
Alignment explanation
Indices: 51383633--51383732 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
51383623 ACTTATCACT
* **
51383633 TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCAC
1 TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTTCCAC
* *
51383685 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTT
1 TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTT
51383733 ATCACTTGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (52 bp):
TTGTCACTTGATCAGATAAGTATAGCCAAAGCTACCACTTATCACTTTCCAC
Found at i:51389984 original size:116 final size:116
Alignment explanation
Indices: 51389780--51390371 Score: 313
Period size: 116 Copynumber: 5.1 Consensus size: 116
51389770 CCAACACTTG
* * * * * * *
51389780 ATGAGTCTTGGGTGTTATGCCGCATTTTGCTATATCGATGCTAATACCTAAAAATGGTTGATCGC
1 ATGAGTCATGGGTGTTATCCCACATTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCAC
* * * *
51389845 CGAATTATATTCCTTTAAGTCATTGAACTAGGTCCTACAAGCCTATTTCCC
66 CAAATTACATTCCTTTAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
* * * * *
51389896 ATGAGTCATGGGTTTTATCCCATATTTTGCAATGTTGATGCTAATACCTAACAATGGCTCATCAC
1 ATGAGTCATGGGTGTTATCCCACATTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCAC
51389961 CAAATGT-CATT-CTTGTAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
66 CAAAT-TACATTCCTT-TAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
* * ** ** * ** * * * * * **
51390012 ATGAGCCATGGGTGCTAAGCCACATAGTGCGAGGTCAATGCTAATGCCCACAAAT-GTTCATTGC
1 ATGAGTCATGGGTGTTATCCCACATTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCAC
* * * * * *
51390076 CAACATT-TATTCC-CT-AGCTCATTGAACTAAGTCCTATAAGCCCATTTCCA
66 CAA-ATTACATTCCTTTAAG-TCATTGAACCAAGTCCTACAAGCCTATTTCCC
* * ** ** * * ** * **
51390126 ATGAGTCATGGGTGTTATGCCATACCATT-CAAGGTCAATGCTAATAGCTATCAATGGTTCATTG
1 ATGAGTCATGGGTGTTATCCCACA-TTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCA
** * * * ** *
51390190 CCAGAA-TACATTCCCAT-AGTTATTGTACTTAAGTCCTATGAGCCTGTTTCCC
65 CCA-AATTACATTCCTTTAAGTCATTGAAC-CAAGTCCTACAAGCCTATTTCCC
* * * * * ** * ** * *
51390242 ATAAGCCATGGGTGTTATGCCATATTGTGCAAGGTCAATGCTAATACCTATCAATGCCTAATCAC
1 ATGAGTCATGGGTGTTATCCCACATTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCAC
* *** * * * * *
51390307 CAAATTATATTCCTACGAGTTATTGAACTAAAT-CTACAAGCTTATTTCCA
66 CAAATTACATTCCTTTAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
* *
51390357 ATGAGTAACGGGTGT
1 ATGAGTCATGGGTGT
51390372 AATGCCATTC
Statistics
Matches: 376, Mismatches: 86, Indels: 29
0.77 0.18 0.06
Matches are distributed among these distances:
113 2 0.01
114 70 0.19
115 68 0.18
116 225 0.60
117 11 0.03
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (116 bp):
ATGAGTCATGGGTGTTATCCCACATTTTGCAATATCGATGCTAATACCTAAAAATGGCTCATCAC
CAAATTACATTCCTTTAAGTCATTGAACCAAGTCCTACAAGCCTATTTCCC
Found at i:51408088 original size:101 final size:101
Alignment explanation
Indices: 51407913--51408115 Score: 406
Period size: 101 Copynumber: 2.0 Consensus size: 101
51407903 TGAACACAAG
51407913 TTATTTCTCTCTCTTTTATGGTCTCAAAGGGACCACTTTGATCTTGTTCATTGAATATTAACTTA
1 TTATTTCTCTCTCTTTTATGGTCTCAAAGGGACCACTTTGATCTTGTTCATTGAATATTAACTTA
51407978 TGCCACCAAATTAAATGAGATTACATTCGTTCTATA
66 TGCCACCAAATTAAATGAGATTACATTCGTTCTATA
51408014 TTATTTCTCTCTCTTTTATGGTCTCAAAGGGACCACTTTGATCTTGTTCATTGAATATTAACTTA
1 TTATTTCTCTCTCTTTTATGGTCTCAAAGGGACCACTTTGATCTTGTTCATTGAATATTAACTTA
51408079 TGCCACCAAATTAAATGAGATTACATTCGTTCTATA
66 TGCCACCAAATTAAATGAGATTACATTCGTTCTATA
51408115 T
1 T
51408116 GCCAATTGTG
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 102 1.00
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.42
Consensus pattern (101 bp):
TTATTTCTCTCTCTTTTATGGTCTCAAAGGGACCACTTTGATCTTGTTCATTGAATATTAACTTA
TGCCACCAAATTAAATGAGATTACATTCGTTCTATA
Found at i:51408851 original size:24 final size:23
Alignment explanation
Indices: 51408803--51408852 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 23
51408793 CTTAATTGCC
*
51408803 TTTGCTAGAAAATGTAACTACTTT
1 TTTGCTAGAAAATCT-ACTACTTT
*
51408827 TTTGCTAGAAAATCT-CTACGTT
1 TTTGCTAGAAAATCTACTACTTT
51408849 TTTG
1 TTTG
51408853 TGGTGCAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.42
24 14 0.58
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (23 bp):
TTTGCTAGAAAATCTACTACTTT
Found at i:51418094 original size:23 final size:23
Alignment explanation
Indices: 51418064--51418116 Score: 106
Period size: 23 Copynumber: 2.3 Consensus size: 23
51418054 CTTCATTTCG
51418064 AGTCTTTGGGATCAGCTTTTAGT
1 AGTCTTTGGGATCAGCTTTTAGT
51418087 AGTCTTTGGGATCAGCTTTTAGT
1 AGTCTTTGGGATCAGCTTTTAGT
51418110 AGTCTTT
1 AGTCTTT
51418117 TTATATGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.17, C:0.13, G:0.25, T:0.45
Consensus pattern (23 bp):
AGTCTTTGGGATCAGCTTTTAGT
Found at i:51431801 original size:21 final size:21
Alignment explanation
Indices: 51431757--51431801 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
51431747 AAAAACCACA
*
51431757 AAAAAATATAAAAATCTATTT
1 AAAAAATATAAAAATCTATAT
*
51431778 AAAAAATATTAAAAT-TATGAT
1 AAAAAATATAAAAATCTAT-AT
51431799 AAA
1 AAA
51431802 TATTCGAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AAAAAATATAAAAATCTATAT
Found at i:51432403 original size:256 final size:255
Alignment explanation
Indices: 51431943--51432453 Score: 934
Period size: 256 Copynumber: 2.0 Consensus size: 255
51431933 ATGGAATTGA
51431943 ATTGCCCTACCTCTTATCCATTACTAAGTGGACCAATTTGAAAATATGTCACAAATTTGGACAAA
1 ATTGCCCTACCTCTTATCCATTACTAAGTGGACCAATTTGAAAATATGTCACAAATTTGGACAAA
51432008 AAAACAATAAACATTTAAAGGAATATGGTTAAAGTAAATAGCATGAAATAAATATATTGATCAAG
66 AAAACAATAAACATTTAAAGGAATATGGTTAAAGTAAATAGCATGAAATAAATATATTGATCAAG
51432073 GGGAAAAGAAAAAAGTTAAAAGATTTTTTTTTTTTTTGGGTTTTTGGTTTAGTGAGGGTTATTTT
131 GGGAAAAGAAAAAAGTTAAAAGATTTTTTTTTTTTTTGGGTTTTTGGTTTAGTGAGGGTTATTTT
*
51432138 AATTTTGGTTATTATTTTAAATTAAGATTAATTTTTAAATATTTTTATTAATTTTTATAAT
196 AATTTTGGTTATT-TATTAAATTAAGATTAATTTTTAAATATTTTTATTAATTTTTATAAT
* * *
51432199 ATTGTCCTACCTCTTATCCATTGCTAAGTGGACCAATTTGAAAATATGTCACAGATTTGGACAAA
1 ATTGCCCTACCTCTTATCCATTACTAAGTGGACCAATTTGAAAATATGTCACAAATTTGGACAAA
*
51432264 AAAACAATAAACATTTAAAGGAATATGGTTGAAGTAAATAGCATGAAATATAA-ATATTGATCAA
66 AAAACAATAAACATTTAAAGGAATATGGTTAAAGTAAATAGCATGAAATA-AATATATTGATCAA
* *
51432328 GGGGGAAAGAGAAAAGTTAAAAGATTTTTTTTTTTTTTGGGTTTTTGGTTTAGTGAGGGTTATTT
130 GGGGAAAAGAAAAAAGTTAAAAGATTTTTTTTTTTTTTGGGTTTTTGGTTTAGTGAGGGTTATTT
51432393 TAATTTTGGTTATTTATTAAATTAAGATTAATTTTTAAATATTTTTATTAATTTTTATAAT
195 TAATTTTGGTTATTTATTAAATTAAGATTAATTTTTAAATATTTTTATTAATTTTTATAAT
51432454 TGTGTCTAGA
Statistics
Matches: 247, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
255 46 0.19
256 199 0.81
257 2 0.01
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (255 bp):
ATTGCCCTACCTCTTATCCATTACTAAGTGGACCAATTTGAAAATATGTCACAAATTTGGACAAA
AAAACAATAAACATTTAAAGGAATATGGTTAAAGTAAATAGCATGAAATAAATATATTGATCAAG
GGGAAAAGAAAAAAGTTAAAAGATTTTTTTTTTTTTTGGGTTTTTGGTTTAGTGAGGGTTATTTT
AATTTTGGTTATTTATTAAATTAAGATTAATTTTTAAATATTTTTATTAATTTTTATAAT
Found at i:51437214 original size:26 final size:26
Alignment explanation
Indices: 51437178--51437229 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
51437168 CGAGGAAGCA
51437178 TTTCAGTATGCAGAATATGTAAGTTT
1 TTTCAGTATGCAGAATATGTAAGTTT
51437204 TTTCAGTATGCAGAATATGTAAGTTT
1 TTTCAGTATGCAGAATATGTAAGTTT
51437230 ACTTCGTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (26 bp):
TTTCAGTATGCAGAATATGTAAGTTT
Found at i:51437238 original size:26 final size:26
Alignment explanation
Indices: 51437179--51437239 Score: 97
Period size: 26 Copynumber: 2.3 Consensus size: 26
51437169 GAGGAAGCAT
*
51437179 TTCAGTATGCAGAATATGTAAGTTTT
1 TTCAGTATGCAGAATATGTAAGTTTC
51437205 TTCAGTATGCAGAATATGTAAGTTTAC
1 TTCAGTATGCAGAATATGTAAGTTT-C
51437232 TTC-GTATG
1 TTCAGTATG
51437240 TTCTTGTGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
26 30 0.91
27 3 0.09
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.41
Consensus pattern (26 bp):
TTCAGTATGCAGAATATGTAAGTTTC
Found at i:51459688 original size:21 final size:23
Alignment explanation
Indices: 51459663--51459705 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
51459653 AATTAAAAAA
*
51459663 AAGTTAATATAT-T-ATAATTAT
1 AAGTTAAAATATGTCATAATTAT
51459684 AAGTTAAAATATGTCATAATTA
1 AAGTTAAAATATGTCATAATTA
51459706 CTTAAAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 1 0.05
23 7 0.37
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (23 bp):
AAGTTAAAATATGTCATAATTAT
Found at i:51468147 original size:19 final size:19
Alignment explanation
Indices: 51468108--51468185 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 19
51468098 TAAAAAAAAA
51468108 TCAAAATAATTTTCAAAATT
1 TCAAAATAATTTT-AAAATT
*
51468128 TTAAAATAACTTTT-AAATT
1 TCAAAATAA-TTTTAAAATT
*
51468147 TCAAAA-ATATTTATAAAAAT
1 TCAAAATA-ATTT-TAAAATT
*
51468167 CCAAAATATATATTTAAAA
1 TCAAAATA-AT-TTTAAAA
51468186 ATATATATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
18 4 0.08
19 12 0.25
20 17 0.35
21 13 0.27
22 2 0.04
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (19 bp):
TCAAAATAATTTTAAAATT
Found at i:51468177 original size:21 final size:20
Alignment explanation
Indices: 51468148--51468187 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
51468138 TTTTAAATTT
51468148 CAAAAATAT-TTATAAAAATC
1 CAAAAATATATT-TAAAAATC
51468168 CAAAATATATATTTAAAAAT
1 CAAAA-ATATATTTAAAAAT
51468188 ATATATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 11 0.61
22 2 0.11
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (20 bp):
CAAAAATATATTTAAAAATC
Found at i:51468188 original size:14 final size:14
Alignment explanation
Indices: 51468169--51468195 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51468159 ATAAAAATCC
51468169 AAAATATATATTTA
1 AAAATATATATTTA
51468183 AAAATATATATTT
1 AAAATATATATTT
51468196 TTTAAATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAATATATATTTA
Found at i:51472739 original size:38 final size:37
Alignment explanation
Indices: 51472689--51472872 Score: 140
Period size: 38 Copynumber: 4.7 Consensus size: 37
51472679 ATAGTATTAT
*
51472689 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
51472726 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
51472766 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
51472808 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
51472846 ATATTAAGAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
51472873 TTTTTATTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 28
0.71 0.11 0.17
Matches are distributed among these distances:
37 28 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.03
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:51472757 original size:18 final size:18
Alignment explanation
Indices: 51472736--51472889 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
51472726 ATATTAAGAA
51472736 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
51472754 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
51472769 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
51472784 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
51472803 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
51472818 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
51472837 GAATATTTAATATTA-AGAA
1 TTTTA-TTAA-ATTATATAT
51472856 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
51472874 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
51472890 TTAATAATAA
Statistics
Matches: 100, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 38 0.38
19 11 0.11
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:51472759 original size:56 final size:55
Alignment explanation
Indices: 51472698--51472889 Score: 208
Period size: 56 Copynumber: 3.3 Consensus size: 55
51472688 TATATTATGA
51472698 TTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
1 TTTTATTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
* * * * *
51472754 TTTTATTAAATTATATTTAATAATAATT-ATTTTAA-ATTATATTATATAGTATTATATATTAT
1 TTTTATTAAATTATA--TAAGAATATTTAATATTAAGA--ATTTTAT-TA--AAT-TATA-TAT
51472816 GATTTTATTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
1 --TTTTATTAAATT-ATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
51472874 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
51472890 TTAATAATAA
Statistics
Matches: 112, Mismatches: 10, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
55 8 0.07
56 30 0.27
57 15 0.13
58 5 0.04
59 4 0.04
60 4 0.04
61 4 0.04
62 5 0.04
63 15 0.13
64 18 0.16
65 4 0.04
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (55 bp):
TTTTATTAAATTATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATAT
Found at i:51472810 original size:120 final size:120
Alignment explanation
Indices: 51472671--51472973 Score: 570
Period size: 120 Copynumber: 2.5 Consensus size: 120
51472661 ATTATTAATC
51472671 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
51472736 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
51472791 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
51472856 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* **
51472911 TATATTTTATAGTATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAG
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAG
51472974 TTTTTTTCTA
Statistics
Matches: 179, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 179 1.00
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
Found at i:51473253 original size:15 final size:15
Alignment explanation
Indices: 51473218--51473267 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
51473208 TTAAGAATTT
*
51473218 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51473232 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51473246 TATTTAATAATAATA
1 TATTTAATTATAATA
*
51473261 TGTTTAA
1 TATTTAA
51473268 ATATGATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
13 8 0.26
14 5 0.16
15 18 0.58
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51473404 original size:16 final size:16
Alignment explanation
Indices: 51473383--51473424 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
51473373 TTATTAAATT
*
51473383 ATATATTTTAATTATA
1 ATATATTTTAATAATA
51473399 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
51473414 AT-TATGTTTAA
1 ATATAT-TTTAA
51473425 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:51473409 original size:15 final size:15
Alignment explanation
Indices: 51473374--51473415 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
51473364 TTAAGAATTT
*
51473374 TATTAAATTAT-ATA
1 TATTTAATTATAATA
51473388 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
51473402 TATTTAATAATAAT
1 TATTTAATTATAAT
51473416 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:51473489 original size:157 final size:157
Alignment explanation
Indices: 51473204--51473665 Score: 809
Period size: 157 Copynumber: 3.0 Consensus size: 157
51473194 AAGAATATTG
51473204 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAA-TATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
51473268 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
51473333 ATAATTTACCAAAACAAATTTCTGCTA
131 ATAATTTACCAAAACAAATTTCTGCTA
51473360 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
51473425 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
51473490 ATAATTTACCAAAACAAATTTCTGCTA
131 ATAATTTACCAAAACAAATTTCTGCTA
*
51473517 ATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTAA
1 ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
*
51473582 ATATGATTAAAATATTTATTATTG---------ATCTTATTAAAATTTAAATAACAATAACAATA
66 ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
* * *
51473638 ATCATTTACTAAAACAAATTTATGCTA
131 ATAATTTACCAAAACAAATTTCTGCTA
51473665 A
1 A
51473666 GGGTATTCTA
Statistics
Matches: 300, Mismatches: 5, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
148 57 0.19
156 55 0.18
157 188 0.63
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (157 bp):
ATTATTAAGAATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAA
ATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAATA
ATAATTTACCAAAACAAATTTCTGCTA
Found at i:51473555 original size:18 final size:17
Alignment explanation
Indices: 51473527--51473561 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
51473517 ATTATTAAGA
*
51473527 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
51473544 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
51473562 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:51473809 original size:16 final size:16
Alignment explanation
Indices: 51473788--51473823 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
51473778 GATTTGCTAT
51473788 TACACCTCCAATCCAA
1 TACACCTCCAATCCAA
*
51473804 TACACCTCTAATCCAA
1 TACACCTCCAATCCAA
51473820 TACA
1 TACA
51473824 GCGAACCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.39, G:0.00, T:0.22
Consensus pattern (16 bp):
TACACCTCCAATCCAA
Found at i:51480107 original size:171 final size:172
Alignment explanation
Indices: 51479819--51480128 Score: 385
Period size: 171 Copynumber: 1.8 Consensus size: 172
51479809 GGTCTTTCCT
51479819 CTGAAAAGCTGGTCCCGAATCCTCATTTGAACATATATGCTTTAGGTGGCTGATTTATCAAACCA
1 CTGAAAAGCTGGTCCCGAATCCTCATTTGAACATATATGCTTTAGGTGGCTGATTTATCAAACCA
** ** *
51479884 ATTAAGCTATCCAGACGCAACATTTATTTCCTTCACAGTATATATAAACTTTTATTTTTGTTT-A
66 ACCAAGCTATCCAGACGCAACATTTATACCCTTCACAGTATATATAAACTTTTATTCTTGTTTAA
*
51479948 CTATAATGTTGCTCTGTACCCCCCAATTGCTTTTTTCCCCCC
131 CCATAATGTTGCTCTGTACCCCCCAATTGCTTTTTTCCCCCC
** * *
51479990 CTGAAAAGCTGGTCCCGAATCCTCATTTGGGCATGAAATATGGTTTAGGT-G-T-CTTTATCAAA
1 CTGAAAAGCTGGTCCCGAATCCTCATTTGAACAT---ATATGCTTTAGGTGGCTGATTTATCAAA
* * ** * * ** * *
51480052 CCAACCAAGTTTTCCTTACGGAACTTTTATACCCTTTTCCGTATATATTAACTTTTATTCTTGTT
63 CCAACCAAGCTATCCAGACGCAACATTTATACCCTTCACAGTATATATAAACTTTTATTCTTGTT
51480117 TAACCATAATGT
128 TAACCATAATGT
51480129 CGTCTTTATT
Statistics
Matches: 115, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
171 92 0.80
172 10 0.09
173 1 0.01
174 12 0.10
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.38
Consensus pattern (172 bp):
CTGAAAAGCTGGTCCCGAATCCTCATTTGAACATATATGCTTTAGGTGGCTGATTTATCAAACCA
ACCAAGCTATCCAGACGCAACATTTATACCCTTCACAGTATATATAAACTTTTATTCTTGTTTAA
CCATAATGTTGCTCTGTACCCCCCAATTGCTTTTTTCCCCCC
Found at i:51480907 original size:28 final size:27
Alignment explanation
Indices: 51480845--51480907 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 27
51480835 TTTAAGTAAT
*
51480845 TAATAAAATTATTTTTAAAAATTGATGA
1 TAAT-AAATTATTTTTAAAAATTAATGA
51480873 TATATAAATTATTTTTAAAAAGTTAAAT-A
1 TA-ATAAATTATTTTTAAAAA-TT-AATGA
51480902 TAATAA
1 TAATAA
51480908 TATATAAGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
28 22 0.71
29 7 0.23
30 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (27 bp):
TAATAAATTATTTTTAAAAATTAATGA
Found at i:51482837 original size:16 final size:16
Alignment explanation
Indices: 51482812--51482846 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
51482802 GAGTTTAAAA
*
51482812 TTTTAAGGGTTCGGGG
1 TTTTAAGGGTTCGGAG
*
51482828 TTTTATGGGTTCGGAG
1 TTTTAAGGGTTCGGAG
51482844 TTT
1 TTT
51482847 GGGGCTTGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.11, C:0.06, G:0.37, T:0.46
Consensus pattern (16 bp):
TTTTAAGGGTTCGGAG
Found at i:51486699 original size:31 final size:32
Alignment explanation
Indices: 51486644--51486730 Score: 90
Period size: 31 Copynumber: 2.8 Consensus size: 32
51486634 ATTCTAGCAA
*
51486644 GGGATATCCTATTCTAGGGATATCCCGG-TTAG
1 GGGATATCCTATTCTAAGGATAT-CCGGCTTAG
*
51486676 GGGATATCCT-TTTTAAGGATATCCGGCTTA-
1 GGGATATCCTATTCTAAGGATATCCGGCTTAG
* * * *
51486706 GGTATATCCCATTCCAGGGATATCC
1 GGGATATCCTATTCTAAGGATATCC
51486731 CCTCGTTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
30 12 0.26
31 24 0.52
32 10 0.22
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (32 bp):
GGGATATCCTATTCTAAGGATATCCGGCTTAG
Found at i:51492839 original size:27 final size:28
Alignment explanation
Indices: 51492795--51492847 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
51492785 ATAGCCCCCA
*
51492795 TTTTTTTGGCTGTGGGATAATGGGTTTG
1 TTTTTTAGGCTGTGGGATAATGGGTTTG
* *
51492823 TTTTTTAGGC-GTTGGATGATGGGTT
1 TTTTTTAGGCTGTGGGATAATGGGTT
51492848 ATTCTATATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (28 bp):
TTTTTTAGGCTGTGGGATAATGGGTTTG
Found at i:51496080 original size:221 final size:221
Alignment explanation
Indices: 51495691--51496133 Score: 868
Period size: 221 Copynumber: 2.0 Consensus size: 221
51495681 ATTTCCATTT
51495691 ATTTTCTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
1 ATTTTCTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
51495756 CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
66 CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
51495821 CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
131 CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
*
51495886 GAATAACAAAAACACACTGAAAAATA
196 AAATAACAAAAACACACTGAAAAATA
*
51495912 ATTTTTTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
1 ATTTTCTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
51495977 CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
66 CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
51496042 CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
131 CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
51496107 AAATAACAAAAACACACTGAAAAATA
196 AAATAACAAAAACACACTGAAAAATA
51496133 A
1 A
51496134 AAAGAAGAAG
Statistics
Matches: 220, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 220 1.00
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.26
Consensus pattern (221 bp):
ATTTTCTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
AAATAACAAAAACACACTGAAAAATA
Found at i:51500501 original size:46 final size:45
Alignment explanation
Indices: 51500392--51500839 Score: 450
Period size: 46 Copynumber: 9.6 Consensus size: 45
51500382 CTTACATATG
* *
51500392 ATCACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCT
* *
51500435 ACCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAA-GCT
*
51500481 AACACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-AG--
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCT
*
51500519 --CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCT
* * * *
51500563 ACCACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG-CTAAGCT
* *
51500609 ATCACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCT
1 ATCACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAG-CTAAGCT
51500661 ATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCT
1 ATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCT-AAGCT
* *
51500713 ATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG-CTAAGCT
*
51500759 ATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCT-AAGCT
*
51500811 ACCACTTATCACTTTGTCACTTGATCAGA
1 ATCACTTATCACTTTGTCACTTGATCAGA
51500840 AGTACTCAAA
Statistics
Matches: 351, Mismatches: 24, Indels: 57
0.81 0.06 0.13
Matches are distributed among these distances:
36 29 0.08
38 3 0.01
40 2 0.01
41 1 0.00
42 3 0.01
43 11 0.03
44 7 0.02
45 21 0.06
46 138 0.39
47 2 0.01
48 1 0.00
49 1 0.00
50 2 0.01
51 5 0.01
52 125 0.36
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.34
Consensus pattern (45 bp):
ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCT
Found at i:51500524 original size:36 final size:36
Alignment explanation
Indices: 51500483--51500601 Score: 130
Period size: 36 Copynumber: 3.0 Consensus size: 36
51500473 CTAAGGCTAA
51500483 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
*
51500519 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG
*
51500561 CTACCACTTATCACTTTGTCTCTTGATCAGATAAGTATAG
1 ----CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
51500601 C
1 C
51500602 CGAAGCTATC
Statistics
Matches: 70, Mismatches: 3, Indels: 20
0.75 0.03 0.22
Matches are distributed among these distances:
36 30 0.43
38 3 0.04
40 3 0.04
42 3 0.04
44 3 0.04
46 28 0.40
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:51500544 original size:82 final size:82
Alignment explanation
Indices: 51500437--51500601 Score: 294
Period size: 82 Copynumber: 2.0 Consensus size: 82
51500427 GCTAGGCTAC
*
51500437 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
51500502 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
* * *
51500519 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
51500584 TGATCAGATAAGTATAG
66 TGATCAGATAAGTATAG
51500601 C
1 C
51500602 CGAAGCTATC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (82 bp):
CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTAACACTTATCACTTTGTCACT
TGATCAGATAAGTATAG
Found at i:51500586 original size:128 final size:123
Alignment explanation
Indices: 51500394--51500633 Score: 347
Period size: 128 Copynumber: 1.9 Consensus size: 123
51500384 TACATATGAT
*
51500394 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTCTCACTTGA
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTCTCACTTGA
* *
51500459 TCAGATAAGTGTAG-CTAAGGCTAACACTTATCACTTTGTCACTTGATCAGATAAGTATAG
66 TCAGATAAGTATAGCCGAA-GCTAACACTTATCACTTT-TCACTT-ATCAGATAAGTATAG
* * * *
51500519 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCT
1 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTCTCACT
*
51500584 TGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTATCA
63 TGATCAGATAAGTATAGCCGAAGCTAACACTTATCACTTTTCACTTATCA
51500634 CTTGATCAGA
Statistics
Matches: 103, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
125 10 0.10
126 8 0.08
127 26 0.25
128 56 0.54
129 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (123 bp):
CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTCTCACTTGA
TCAGATAAGTATAGCCGAAGCTAACACTTATCACTTTTCACTTATCAGATAAGTATAG
Found at i:51500620 original size:7 final size:7
Alignment explanation
Indices: 51500608--51500641 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
51500598 TAGCCGAAGC
51500608 TATCACT
1 TATCACT
51500615 TATCACT
1 TATCACT
*
51500622 TTTCACT
1 TATCACT
51500629 TATCACT
1 TATCACT
51500636 TGATCA
1 T-ATCA
51500642 GATAAGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.44
Consensus pattern (7 bp):
TATCACT
Found at i:51500639 original size:52 final size:52
Alignment explanation
Indices: 51500565--51500833 Score: 370
Period size: 52 Copynumber: 5.2 Consensus size: 52
51500555 CTAAAGCTAC
* * *
51500565 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTAT
1 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
*
51500618 CACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
51500670 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
51500722 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
51500768 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
51500820 CACTTTGTCACTTG
1 CACTTT-TCACTTG
51500834 ATCAGAAGTA
Statistics
Matches: 191, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
46 42 0.22
52 134 0.70
53 15 0.08
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:51500733 original size:98 final size:98
Alignment explanation
Indices: 51500519--51500839 Score: 438
Period size: 98 Copynumber: 3.3 Consensus size: 98
51500509 ATAAGTATAG
* ** *
51500519 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC--T----TT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTT
* * *
51500578 GTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
*
51500611 CACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
51500676 CCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
60 CCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
* *
51500715 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTT
* *
51500780 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
51500813 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
51500840 AGTACTCAAA
Statistics
Matches: 205, Mismatches: 12, Indels: 18
0.87 0.05 0.08
Matches are distributed among these distances:
92 10 0.05
95 1 0.00
98 150 0.73
100 1 0.00
101 1 0.00
104 42 0.20
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCTGAAGCTAT
Found at i:51500798 original size:150 final size:150
Alignment explanation
Indices: 51500533--51500825 Score: 505
Period size: 150 Copynumber: 2.0 Consensus size: 150
51500523 TATCACTTTT
*
51500533 TCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCTCTTGATCAGATAAGTA
1 TCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTA
* * *
51500598 TAGCCGAAGCTATCACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 TAGCCGAAGCTATCACTTATCACTTTCCACTTATCACTTGATCAGATAAGTGTAGCCAAAGCTAC
51500663 CACTTATCACTTTCCACTTG
131 CACTTATCACTTTCCACTTG
* *
51500683 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTA
1 TCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTA
* * *
51500748 TAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 TAGCCGAAGCTATCACTTATCACTTTCCACTTATCACTTGATCAGATAAGTGTAGCCAAAGCTAC
51500813 CACTTATCACTTT
131 CACTTATCACTTT
51500826 GTCACTTGAT
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
150 134 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (150 bp):
TCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTA
TAGCCGAAGCTATCACTTATCACTTTCCACTTATCACTTGATCAGATAAGTGTAGCCAAAGCTAC
CACTTATCACTTTCCACTTG
Found at i:51503906 original size:7 final size:7
Alignment explanation
Indices: 51503894--51504615 Score: 594
Period size: 7 Copynumber: 100.7 Consensus size: 7
51503884 TGTATATTCT
51503894 GGTTTAG
1 GGTTTAG
51503901 GGTTTAG
1 GGTTTAG
*
51503908 GGTTCAG
1 GGTTTAG
*
51503915 GGTTCAG
1 GGTTTAG
* *
51503922 GGTTCAA
1 GGTTTAG
* *
51503929 GGTCTGG
1 GGTTTAG
* *
51503936 GGTCTGG
1 GGTTTAG
*
51503943 GGTCTAG
1 GGTTTAG
*
51503950 GGTTTAA
1 GGTTTAG
51503957 GGTTTAG
1 GGTTTAG
51503964 GGTTTAG
1 GGTTTAG
51503971 GGTTTTAG
1 GG-TTTAG
51503979 GGTTTTAG
1 GG-TTTAG
51503987 GGTTT-G
1 GGTTTAG
51503993 AGGTTTAG
1 -GGTTTAG
51504001 GGTTTAG
1 GGTTTAG
*
51504008 GGTTTGG
1 GGTTTAG
51504015 GGTTTAG
1 GGTTTAG
*
51504022 GGGTTAG
1 GGTTTAG
* *
51504029 TGTTTGG
1 GGTTTAG
51504036 GGTTT-G
1 GGTTTAG
51504042 GGTTTTAG
1 GG-TTTAG
51504050 GGTTTAG
1 GGTTTAG
51504057 GGTTTTAG
1 GG-TTTAG
*
51504065 TGTTT-G
1 GGTTTAG
51504071 GGATTTAG
1 GG-TTTAG
51504079 AGGTTTAG
1 -GGTTTAG
*
51504087 GGTTTGG
1 GGTTTAG
*
51504094 GGTTTAA
1 GGTTTAG
* *
51504101 AGTTTGG
1 GGTTTAG
*
51504108 GGTTTGG
1 GGTTTAG
51504115 GGTTTTAG
1 GG-TTTAG
51504123 GGTTTAG
1 GGTTTAG
*
51504130 GGTTTTAT
1 GG-TTTAG
51504138 GGTTTGAG
1 GGTTT-AG
51504146 GG-TTAG
1 GGTTTAG
51504152 GGTTTGAG
1 GGTTT-AG
*
51504160 GTTTTAG
1 GGTTTAG
51504167 AGGTTTAG
1 -GGTTTAG
51504175 GGTTTTAGG
1 GG-TTTA-G
*
51504184 GGTTTAA
1 GGTTTAG
51504191 GGTTTAG
1 GGTTTAG
*
51504198 GGTTTAA
1 GGTTTAG
51504205 GGTTTAG
1 GGTTTAG
51504212 GGTTTAG
1 GGTTTAG
*
51504219 AGGTTTTG
1 -GGTTTAG
* *
51504227 GTTTTGGG
1 GGTTT-AG
51504235 GGTTT-G
1 GGTTTAG
* *
51504241 GTTTTGG
1 GGTTTAG
*
51504248 GGTTTTG
1 GGTTTAG
*
51504255 GGTTTAT
1 GGTTTAG
*
51504262 GGTTTGG
1 GGTTTAG
51504269 GGTTTAG
1 GGTTTAG
*
51504276 GGTTTAT
1 GGTTTAG
*
51504283 GATTT-G
1 GGTTTAG
*
51504289 GGTTTTGG
1 GG-TTTAG
*
51504297 GGTTTGG
1 GGTTTAG
51504304 GGTTTAAG
1 GGTTT-AG
51504312 GG-TTAG
1 GGTTTAG
*
51504318 GGTTTAC
1 GGTTTAG
* *
51504325 AGTTTTG
1 GGTTTAG
*
51504332 GGCTTAG
1 GGTTTAG
*
51504339 GGTTTGG
1 GGTTTAG
*
51504346 GGTTTGG
1 GGTTTAG
*
51504353 GGTTTGG
1 GGTTTAG
*
51504360 GGTTTGG
1 GGTTTAG
51504367 GGTTTAG
1 GGTTTAG
*
51504374 GGTTTAT
1 GGTTTAG
* *
51504381 GGCTTAT
1 GGTTTAG
*
51504388 GATTTAG
1 GGTTTAG
*
51504395 GGGTTAG
1 GGTTTAG
*
51504402 GGGTTAG
1 GGTTTAG
51504409 GGTTTAG
1 GGTTTAG
**
51504416 GGCATAG
1 GGTTTAG
51504423 GGTTTAG
1 GGTTTAG
*
51504430 GGCTTAG
1 GGTTTAG
* *
51504437 GGCTTAA
1 GGTTTAG
51504444 GGTTTAG
1 GGTTTAG
* *
51504451 GGTCTGG
1 GGTTTAG
51504458 GGTTTAG
1 GGTTTAG
51504465 GGTTTAG
1 GGTTTAG
*
51504472 GGTATAG
1 GGTTTAG
51504479 GGTTTAG
1 GGTTTAG
* *
51504486 GGTATAT
1 GGTTTAG
*
51504493 GGTTTAT
1 GGTTTAG
51504500 GGTTTAG
1 GGTTTAG
*
51504507 GGTTTAT
1 GGTTTAG
51504514 GGTTTAG
1 GGTTTAG
51504521 GGTTTTAG
1 GG-TTTAG
*
51504529 GGTTTAT
1 GGTTTAG
51504536 GGTTTAAG
1 GGTTT-AG
51504544 GGTTTTAG
1 GG-TTTAG
51504552 GGTTTGAG
1 GGTTT-AG
*
51504560 GTTTTAG
1 GGTTTAG
51504567 GGTTTAG
1 GGTTTAG
51504574 GGTTTAG
1 GGTTTAG
51504581 GGTTTTAG
1 GG-TTTAG
51504589 GGTTTTAG
1 GG-TTTAG
51504597 GGTTTAG
1 GGTTTAG
51504604 GGTTTAG
1 GGTTTAG
*
51504611 AGTTT
1 GGTTT
51504616 TTTGTCTGGA
Statistics
Matches: 591, Mismatches: 95, Indels: 58
0.79 0.13 0.08
Matches are distributed among these distances:
6 20 0.03
7 445 0.75
8 118 0.20
9 8 0.01
ACGTcount: A:0.13, C:0.02, G:0.42, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:51505719 original size:27 final size:28
Alignment explanation
Indices: 51505675--51505727 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
51505665 TAGCCCCCCA
*
51505675 TTTTTTTGGCTGTGGGATAATGGGTTTG
1 TTTTTTAGGCTGTGGGATAATGGGTTTG
* *
51505703 TTTTTTAGGC-GTTGGATGATGGGTT
1 TTTTTTAGGCTGTGGGATAATGGGTT
51505728 ATTCTATATG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 13 0.59
28 9 0.41
ACGTcount: A:0.11, C:0.04, G:0.36, T:0.49
Consensus pattern (28 bp):
TTTTTTAGGCTGTGGGATAATGGGTTTG
Found at i:51508957 original size:221 final size:221
Alignment explanation
Indices: 51508568--51509010 Score: 868
Period size: 221 Copynumber: 2.0 Consensus size: 221
51508558 ATTTCCATTT
51508568 ATTTTCTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
1 ATTTTCTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
51508633 CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
66 CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
51508698 CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
131 CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
*
51508763 GAATAACAAAAACACACTGAAAAATA
196 AAATAACAAAAACACACTGAAAAATA
*
51508789 ATTTTTTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
1 ATTTTCTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
51508854 CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
66 CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
51508919 CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
131 CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
51508984 AAATAACAAAAACACACTGAAAAATA
196 AAATAACAAAAACACACTGAAAAATA
51509010 A
1 A
51509011 AAAGAAGAAG
Statistics
Matches: 220, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 220 1.00
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.26
Consensus pattern (221 bp):
ATTTTCTGCTAATCAGTTAGGGTTTTAGGGTAGATACTTATATAGTTGTTAGAAACATATCTTCA
CTGTAAAATCTCATAAATAGGACTCAAAGATTTGCAAGAAAATGTCCTTAAATACAGAAAACAAA
CAATCGAAAAAAATAAAACACATAACAGAATATAAGCAGTGTTTCATAAGGCTGAACACCAAAAC
AAATAACAAAAACACACTGAAAAATA
Found at i:51513378 original size:46 final size:45
Alignment explanation
Indices: 51513269--51513715 Score: 450
Period size: 52 Copynumber: 9.6 Consensus size: 45
51513259 CTTACATATG
* *
51513269 ATCACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCT
* *
51513312 ACCACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAA-GCT
*
51513358 AACACTTATCACTTTGTCACTTGATCAGATAA--GTA--T-AG--
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCT
*
51513396 --CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AAGCT
* * *
51513440 A-CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG-CTAAGCT
* *
51513485 ATCACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCT
1 ATCACTTATCAC---T---TTGTCACTTGATCAGATAAGTGTAG-CTAAGCT
51513537 ATCACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTGAAGCT
1 ATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCT-AAGCT
* *
51513589 ATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCT
1 ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAG-CTAAGCT
*
51513635 ATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCT
1 ATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTGTAGCT-AAGCT
*
51513687 ACCACTTATCACTTTGTCACTTGATCAGA
1 ATCACTTATCACTTTGTCACTTGATCAGA
51513716 AGTACTCAAA
Statistics
Matches: 351, Mismatches: 23, Indels: 57
0.81 0.05 0.13
Matches are distributed among these distances:
36 29 0.08
38 3 0.01
40 2 0.01
41 1 0.00
42 3 0.01
43 11 0.03
44 7 0.02
45 60 0.17
46 100 0.28
47 1 0.00
48 1 0.00
49 1 0.00
50 2 0.01
51 5 0.01
52 125 0.36
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (45 bp):
ATCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAGCT
Found at i:51513401 original size:36 final size:36
Alignment explanation
Indices: 51513360--51513477 Score: 137
Period size: 36 Copynumber: 3.0 Consensus size: 36
51513350 CTAAGGCTAA
51513360 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
*
51513396 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAG
1 CACTTATCACTTTGTCACTTGATCAGATAA--GTA--T--AG
*
51513438 CTACACTTATCACTTTGTCTCTTGATCAGATAAGTATAG
1 ---CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
51513477 C
1 C
51513478 CGAAGCTATC
Statistics
Matches: 70, Mismatches: 3, Indels: 18
0.77 0.03 0.20
Matches are distributed among these distances:
36 30 0.43
38 3 0.04
39 2 0.03
40 1 0.01
41 1 0.01
42 2 0.03
43 3 0.04
45 28 0.40
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (36 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAG
Found at i:51513421 original size:82 final size:81
Alignment explanation
Indices: 51513314--51513477 Score: 292
Period size: 82 Copynumber: 2.0 Consensus size: 81
51513304 GCTAGGCTAC
*
51513314 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCT-ACACTTATCACTTTGTCACT
51513379 TGATCAGATAAGTATAG
65 TGATCAGATAAGTATAG
* *
51513396 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTGTCTCTT
1 CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTGTCACTT
51513461 GATCAGATAAGTATAG
66 GATCAGATAAGTATAG
51513477 C
1 C
51513478 CGAAGCTATC
Statistics
Matches: 79, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
81 37 0.47
82 42 0.53
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (81 bp):
CACTTATCACTTTCTCACTTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTGTCACTT
GATCAGATAAGTATAG
Found at i:51513430 original size:127 final size:123
Alignment explanation
Indices: 51513271--51513509 Score: 338
Period size: 127 Copynumber: 1.9 Consensus size: 123
51513261 TACATATGAT
*
51513271 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTCTCACTTG
1 CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAAGCTA-CACTTATCACTTTCTCACTTG
* *
51513335 ATCAGATAAGTGTAG-CTAAGGCTAACACTTATCACTTTGTCACTTGATCAGATAAGTATAG
65 ATCAGATAAGTATAGCCGAA-GCTAACACTTATCACTTT-TCACTT-ATCAGATAAGTATAG
* * * *
51513396 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTGTCTCTT
1 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTCTCACTT
*
51513461 GATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTATCA
64 GATCAGATAAGTATAGCCGAAGCTAACACTTATCACTTTTCACTTATCA
51513510 CTTGATCAGA
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
125 14 0.14
126 10 0.10
127 70 0.69
128 8 0.08
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (123 bp):
CACTTATCACTTGTCCCTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTCTCACTTGA
TCAGATAAGTATAGCCGAAGCTAACACTTATCACTTTTCACTTATCAGATAAGTATAG
Found at i:51513496 original size:7 final size:7
Alignment explanation
Indices: 51513484--51513517 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
51513474 TAGCCGAAGC
51513484 TATCACT
1 TATCACT
51513491 TATCACT
1 TATCACT
*
51513498 TTTCACT
1 TATCACT
51513505 TATCACT
1 TATCACT
51513512 TGATCA
1 T-ATCA
51513518 GATAAGTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 20 0.83
8 4 0.17
ACGTcount: A:0.26, C:0.26, G:0.03, T:0.44
Consensus pattern (7 bp):
TATCACT
Found at i:51513612 original size:150 final size:149
Alignment explanation
Indices: 51513410--51513701 Score: 503
Period size: 150 Copynumber: 2.0 Consensus size: 149
51513400 TATCACTTTT
*
51513410 TCACTTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTGTCTCTTGATCAGATAAGTAT
1 TCACTTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTGTCACTTGATCAGATAAGTAT
* * *
51513475 AGCCGAAGCTATCACTTATCACTTTTCACTTATCACTTGATCAGATAAGTGTAGCCGAAGCTATC
66 AGCCGAAGCTATCACTTATCACTTTCCACTTATCACTTGATCAGATAAGTGTAGCCAAAGCTACC
51513540 ACTTATCACTTTCCACTTG
131 ACTTATCACTTTCCACTTG
*
51513559 TCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTA
1 TCACTTGATCAGATAAGTGTAGCTAAAGCTA-CACTTATCACTTTGTCACTTGATCAGATAAGTA
* * *
51513624 TAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
65 TAGCCGAAGCTATCACTTATCACTTTCCACTTATCACTTGATCAGATAAGTGTAGCCAAAGCTAC
51513689 CACTTATCACTTT
130 CACTTATCACTTT
51513702 GTCACTTGAT
Statistics
Matches: 134, Mismatches: 8, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
149 30 0.22
150 104 0.78
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (149 bp):
TCACTTGATCAGATAAGTGTAGCTAAAGCTACACTTATCACTTTGTCACTTGATCAGATAAGTAT
AGCCGAAGCTATCACTTATCACTTTCCACTTATCACTTGATCAGATAAGTGTAGCCAAAGCTACC
ACTTATCACTTTCCACTTG
Found at i:51513630 original size:98 final size:98
Alignment explanation
Indices: 51513452--51513715 Score: 402
Period size: 98 Copynumber: 2.6 Consensus size: 98
51513442 ACTTATCACT
* * * *
51513452 TTGTCTCTTGATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTTCACTTATCACTTGATC
1 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCAC---T---TTGTCACTTGATC
*
51513517 AGATAAGTGTAGCCGAAGCTATCACTTATCACTTTCCAC
60 AGATAAGTATAGCCGAAGCTATCACTTATCACTTTCCAC
51513556 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
1 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
*
51513621 GTATAGCCGAAGCTATTACTTATCACTTTCCAC
66 GTATAGCCGAAGCTATCACTTATCACTTTCCAC
* *
51513654 TTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGA
51513716 AGTACTCAAA
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
98 109 0.72
101 1 0.01
104 42 0.28
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (98 bp):
TTGTCACTTGATCAGATAAGTGTAGCTGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAA
GTATAGCCGAAGCTATCACTTATCACTTTCCAC
Found at i:51516778 original size:7 final size:7
Alignment explanation
Indices: 51516766--51516914 Score: 115
Period size: 7 Copynumber: 21.4 Consensus size: 7
51516756 TGTATATTCT
51516766 GGTTTAG
1 GGTTTAG
51516773 GGTTTAG
1 GGTTTAG
*
51516780 GGTTCAG
1 GGTTTAG
*
51516787 GGTTCA-
1 GGTTTAG
*
51516793 GGTTCA-
1 GGTTTAG
* * *
51516799 AGTCTGG
1 GGTTTAG
**
51516806 GGTTCGG
1 GGTTTAG
*
51516813 GGTCTAG
1 GGTTTAG
51516820 GGTTTAG
1 GGTTTAG
51516827 GGTTTAG
1 GGTTTAG
51516834 GGTTTAG
1 GGTTTAG
51516841 GGTTTTAAG
1 GG-TTT-AG
*
51516850 GTTTTAG
1 GGTTTAG
*
51516857 GGTTCAG
1 GGTTTAG
51516864 GGTTTAG
1 GGTTTAG
*
51516871 GGTTCAG
1 GGTTTAG
*
51516878 GGTTCAG
1 GGTTTAG
*
51516885 GGTTCAG
1 GGTTTAG
*
51516892 GGTTCAG
1 GGTTTAG
51516899 GGTTT-G
1 GGTTTAG
*
51516905 GGTTCAG
1 GGTTTAG
51516912 GGT
1 GGT
51516915 CTGGGGTCTG
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
6 13 0.11
7 97 0.82
8 6 0.05
9 3 0.03
ACGTcount: A:0.13, C:0.08, G:0.42, T:0.36
Consensus pattern (7 bp):
GGTTTAG
Found at i:51516921 original size:7 final size:7
Alignment explanation
Indices: 51516911--51517461 Score: 682
Period size: 7 Copynumber: 83.3 Consensus size: 7
51516901 TTTGGGTTCA
51516911 GGGTCTG
1 GGGTCTG
51516918 GGGTCTG
1 GGGTCTG
51516925 GGGTCTG
1 GGGTCTG
51516932 GGGTCTG
1 GGGTCTG
51516939 GGGT-TG
1 GGGTCTG
51516945 GGGTCT-
1 GGGTCTG
51516951 GGGTCTG
1 GGGTCTG
51516958 GGGTCTG
1 GGGTCTG
51516965 GGGTCTG
1 GGGTCTG
51516972 GGGTCTG
1 GGGTCTG
51516979 GGGTCT-
1 GGGTCTG
51516985 GGGTCTG
1 GGGTCTG
51516992 GGGTTCTG
1 GGG-TCTG
51517000 GGGTCTG
1 GGGTCTG
51517007 GGGTCT-
1 GGGTCTG
51517013 GGGTCTG
1 GGGTCTG
51517020 GGGTCTG
1 GGGTCTG
51517027 GGGTCTG
1 GGGTCTG
51517034 GGGTCT-
1 GGGTCTG
51517040 GGGTCT-
1 GGGTCTG
51517046 GGGT-TG
1 GGGTCTG
51517052 GGGTCT-
1 GGGTCTG
51517058 GGGTCTG
1 GGGTCTG
51517065 GGGTCT-
1 GGGTCTG
51517071 GGGTCTG
1 GGGTCTG
51517078 GGGTCTG
1 GGGTCTG
51517085 GGGTCTG
1 GGGTCTG
51517092 GGGTCT-
1 GGGTCTG
51517098 GGGTCTG
1 GGGTCTG
51517105 GGGTCT-
1 GGGTCTG
51517111 GGGTCT-
1 GGGTCTG
51517117 GGGTCTG
1 GGGTCTG
51517124 GGGTCT-
1 GGGTCTG
51517130 GGGTCT-
1 GGGTCTG
51517136 GGGTCTG
1 GGGTCTG
51517143 GGGTCT-
1 GGGTCTG
51517149 GGGTCTG
1 GGGTCTG
51517156 GGGTCTG
1 GGGTCTG
51517163 GGGTCTG
1 GGGTCTG
51517170 GGGTCT-
1 GGGTCTG
51517176 GGGTCTG
1 GGGTCTG
51517183 GGGTCTG
1 GGGTCTG
51517190 GGGTCT-
1 GGGTCTG
51517196 GGGTCTG
1 GGGTCTG
51517203 GGGTCTG
1 GGGTCTG
51517210 GGGTCT-
1 GGGTCTG
51517216 GGGTCTG
1 GGGTCTG
51517223 GGGTCTG
1 GGGTCTG
51517230 GGGTCTG
1 GGGTCTG
51517237 GGGTCTG
1 GGGTCTG
51517244 GGGTCTG
1 GGGTCTG
51517251 GGGT-TG
1 GGGTCTG
51517257 GGGTC--
1 GGGTCTG
51517262 GGGTCTG
1 GGGTCTG
51517269 GGGTCT-
1 GGGTCTG
51517275 GGGTCTG
1 GGGTCTG
51517282 GGGTCT-
1 GGGTCTG
51517288 GGGTCTG
1 GGGTCTG
51517295 GGGTCTG
1 GGGTCTG
51517302 GGGTCTG
1 GGGTCTG
51517309 GGGTCTG
1 GGGTCTG
51517316 GGG--T-
1 GGGTCTG
*
51517320 GGGTTTG
1 GGGTCTG
*
51517327 GGGTTTG
1 GGGTCTG
*
51517334 GGGTTTG
1 GGGTCTG
*
51517341 GGGT-TT
1 GGGTCTG
*
51517347 GGGT-TT
1 GGGTCTG
*
51517353 GGGT-TT
1 GGGTCTG
*
51517359 GGGTTTG
1 GGGTCTG
*
51517366 GGGTTTG
1 GGGTCTG
*
51517373 GGGTTTG
1 GGGTCTG
*
51517380 GGGTTTG
1 GGGTCTG
*
51517387 GGGTTTG
1 GGGTCTG
*
51517394 GGGTTTG
1 GGGTCTG
51517401 GGG--TG
1 GGGTCTG
*
51517406 GGGTTTG
1 GGGTCTG
*
51517413 GGGTTTG
1 GGGTCTG
*
51517420 GGGT-TT
1 GGGTCTG
*
51517426 GGGTTTG
1 GGGTCTG
*
51517433 GGGTTTG
1 GGGTCTG
*
51517440 GGGT-TT
1 GGGTCTG
*
51517446 GGGTTTG
1 GGGTCTG
*
51517453 GGGTTTG
1 GGGTCTG
51517460 GG
1 GG
51517462 TTTGGGTTTG
Statistics
Matches: 509, Mismatches: 6, Indels: 58
0.89 0.01 0.10
Matches are distributed among these distances:
4 3 0.01
5 12 0.02
6 150 0.29
7 337 0.66
8 7 0.01
ACGTcount: A:0.00, C:0.11, G:0.56, T:0.33
Consensus pattern (7 bp):
GGGTCTG
Found at i:51516948 original size:13 final size:14
Alignment explanation
Indices: 51516911--51517461 Score: 682
Period size: 13 Copynumber: 41.6 Consensus size: 14
51516901 TTTGGGTTCA
51516911 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51516925 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51516939 GGGT-TGGGGTCT-
1 GGGTCTGGGGTCTG
51516951 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51516965 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51516979 GGGTCT-GGGTCTG
1 GGGTCTGGGGTCTG
51516992 GGGTTCTGGGGTCTG
1 GGG-TCTGGGGTCTG
51517007 GGGTCT-GGGTCTG
1 GGGTCTGGGGTCTG
51517020 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51517034 GGGTCT-GGGTCT-
1 GGGTCTGGGGTCTG
51517046 GGGT-TGGGGTCT-
1 GGGTCTGGGGTCTG
51517058 GGGTCTGGGGTCT-
1 GGGTCTGGGGTCTG
51517071 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51517085 GGGTCTGGGGTCT-
1 GGGTCTGGGGTCTG
51517098 GGGTCTGGGGTCT-
1 GGGTCTGGGGTCTG
51517111 GGGTCT-GGGTCTG
1 GGGTCTGGGGTCTG
51517124 GGGTCT-GGGTCT-
1 GGGTCTGGGGTCTG
51517136 GGGTCTGGGGTCT-
1 GGGTCTGGGGTCTG
51517149 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51517163 GGGTCTGGGGTCT-
1 GGGTCTGGGGTCTG
51517176 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51517190 GGGTCT-GGGTCTG
1 GGGTCTGGGGTCTG
51517203 GGGTCTGGGGTCT-
1 GGGTCTGGGGTCTG
51517216 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51517230 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51517244 GGGTCTGGGGT-TG
1 GGGTCTGGGGTCTG
51517257 GGGTC--GGGTCTG
1 GGGTCTGGGGTCTG
51517269 GGGTCT-GGGTCTG
1 GGGTCTGGGGTCTG
51517282 GGGTCT-GGGTCTG
1 GGGTCTGGGGTCTG
51517295 GGGTCTGGGGTCTG
1 GGGTCTGGGGTCTG
51517309 GGGTCTGGGG--T-
1 GGGTCTGGGGTCTG
* *
51517320 GGGTTTGGGGTTTG
1 GGGTCTGGGGTCTG
* *
51517334 GGGTTTGGGGT-TT
1 GGGTCTGGGGTCTG
* *
51517347 GGGT-TTGGGT-TT
1 GGGTCTGGGGTCTG
* *
51517359 GGGTTTGGGGTTTG
1 GGGTCTGGGGTCTG
* *
51517373 GGGTTTGGGGTTTG
1 GGGTCTGGGGTCTG
* *
51517387 GGGTTTGGGGTTTG
1 GGGTCTGGGGTCTG
*
51517401 GGG--TGGGGTTTG
1 GGGTCTGGGGTCTG
* *
51517413 GGGTTTGGGGT-TT
1 GGGTCTGGGGTCTG
* *
51517426 GGGTTTGGGGTTTG
1 GGGTCTGGGGTCTG
* *
51517440 GGGT-TTGGGTTTG
1 GGGTCTGGGGTCTG
*
51517453 GGGTTTGGG
1 GGGTCTGGG
51517462 TTTGGGTTTG
Statistics
Matches: 502, Mismatches: 9, Indels: 52
0.89 0.02 0.09
Matches are distributed among these distances:
11 14 0.03
12 61 0.12
13 223 0.44
14 194 0.39
15 10 0.02
ACGTcount: A:0.00, C:0.11, G:0.56, T:0.33
Consensus pattern (14 bp):
GGGTCTGGGGTCTG
Found at i:51517493 original size:7 final size:7
Alignment explanation
Indices: 51517320--51526146 Score: 11918
Period size: 7 Copynumber: 1240.9 Consensus size: 7
51517310 GGTCTGGGGT
*
51517320 GGGTTTG
1 GGGTTTA
*
51517327 GGGTTTG
1 GGGTTTA
*
51517334 GGGTTTG
1 GGGTTTA
51517341 GGGTTT-
1 GGGTTTA
51517347 GGGTTT-
1 GGGTTTA
51517353 GGGTTT-
1 GGGTTTA
*
51517359 GGGTTTG
1 GGGTTTA
*
51517366 GGGTTTG
1 GGGTTTA
*
51517373 GGGTTTG
1 GGGTTTA
*
51517380 GGGTTTG
1 GGGTTTA
*
51517387 GGGTTTG
1 GGGTTTA
51517394 GGGTTT-
1 GGGTTTA
* *
51517400 GGG-GTG
1 GGGTTTA
*
51517406 GGGTTTG
1 GGGTTTA
*
51517413 GGGTTTG
1 GGGTTTA
51517420 GGGTTT-
1 GGGTTTA
*
51517426 GGGTTTG
1 GGGTTTA
*
51517433 GGGTTTG
1 GGGTTTA
51517440 GGGTTT-
1 GGGTTTA
*
51517446 GGGTTTG
1 GGGTTTA
51517453 GGGTTT-
1 GGGTTTA
51517459 GGGTTT-
1 GGGTTTA
51517465 GGGTTT-
1 GGGTTTA
*
51517471 GGG-TTG
1 GGGTTTA
51517477 GGGTTT-
1 GGGTTTA
51517483 GGGTTTA
1 GGGTTTA
51517490 GGGTTTA
1 GGGTTTA
51517497 GGGTTTA
1 GGGTTTA
51517504 GGGTTTA
1 GGGTTTA
51517511 GGGTTTA
1 GGGTTTA
51517518 GGGTTTA
1 GGGTTTA
51517525 GGGTTTTA
1 GGG-TTTA
51517533 GGGTTTA
1 GGGTTTA
*
51517540 GGGTTTT
1 GGGTTTA
51517547 GGGTTTA
1 GGGTTTA
51517554 GGGTTTA
1 GGGTTTA
51517561 -GGTTTA
1 GGGTTTA
51517567 GGG-TTA
1 GGGTTTA
51517573 -GGTTTA
1 GGGTTTA
51517579 GGGTTTA
1 GGGTTTA
51517586 GGGTTTA
1 GGGTTTA
51517593 GGGTTTA
1 GGGTTTA
51517600 GGGTTTTA
1 GGG-TTTA
51517608 GGGTTTA
1 GGGTTTA
51517615 GGG-TTA
1 GGGTTTA
51517621 GGGTTTA
1 GGGTTTA
51517628 GGGTTTA
1 GGGTTTA
51517635 GGGTTTA
1 GGGTTTA
51517642 GGGTTTA
1 GGGTTTA
51517649 GGGTTTA
1 GGGTTTA
51517656 GGGTTTA
1 GGGTTTA
51517663 GGGTTTA
1 GGGTTTA
51517670 GGGTTTA
1 GGGTTTA
51517677 GGGTTTA
1 GGGTTTA
51517684 GGGTTTA
1 GGGTTTA
51517691 GGGTTTA
1 GGGTTTA
51517698 GGGTTTA
1 GGGTTTA
51517705 GGGTTTA
1 GGGTTTA
51517712 GGGTTTA
1 GGGTTTA
51517719 GGGTTTA
1 GGGTTTA
51517726 GGGTTTA
1 GGGTTTA
51517733 GGGTTT-
1 GGGTTTA
51517739 GGGTTTA
1 GGGTTTA
51517746 GGGTTTA
1 GGGTTTA
51517753 GGGTTTA
1 GGGTTTA
51517760 GGGTTTA
1 GGGTTTA
51517767 GGGTTTA
1 GGGTTTA
51517774 GGGTTTA
1 GGGTTTA
51517781 GGG-TTA
1 GGGTTTA
51517787 GGGTTTA
1 GGGTTTA
51517794 GGG-TTA
1 GGGTTTA
51517800 GGGTTTA
1 GGGTTTA
51517807 GGGTTTA
1 GGGTTTA
51517814 GGGTTTA
1 GGGTTTA
51517821 GGGTTTA
1 GGGTTTA
51517828 GGGTTTA
1 GGGTTTA
51517835 GGGTTTA
1 GGGTTTA
51517842 GGGTTTA
1 GGGTTTA
51517849 GGGTTTA
1 GGGTTTA
51517856 GGGTTTA
1 GGGTTTA
51517863 GGGTTTA
1 GGGTTTA
51517870 GGGTTTA
1 GGGTTTA
51517877 GGGTTTA
1 GGGTTTA
51517884 GGGTTTA
1 GGGTTTA
51517891 GGGTTTA
1 GGGTTTA
51517898 GGGTTTTA
1 GGG-TTTA
51517906 GGGTTTA
1 GGGTTTA
51517913 GGGTTTA
1 GGGTTTA
51517920 GGGTTTA
1 GGGTTTA
51517927 GGGTTTA
1 GGGTTTA
51517934 GGGTTTA
1 GGGTTTA
51517941 GGGTTTTA
1 GGG-TTTA
51517949 GGGTTTA
1 GGGTTTA
*
51517956 GGTTTTA
1 GGGTTTA
51517963 GGGTTTA
1 GGGTTTA
51517970 GGGTTTA
1 GGGTTTA
51517977 GGGTTTA
1 GGGTTTA
51517984 GGGTTTA
1 GGGTTTA
51517991 GGGTTTA
1 GGGTTTA
51517998 GGGTTTA
1 GGGTTTA
51518005 GGGTTTA
1 GGGTTTA
51518012 GGGTTTA
1 GGGTTTA
51518019 GGGTTTA
1 GGGTTTA
51518026 GGGTTTA
1 GGGTTTA
51518033 GGG-TTA
1 GGGTTTA
51518039 GGG-TTA
1 GGGTTTA
51518045 GGGTTTA
1 GGGTTTA
51518052 GGGTTTA
1 GGGTTTA
51518059 GGGTTTA
1 GGGTTTA
51518066 GGGTTTA
1 GGGTTTA
51518073 GGGTTTA
1 GGGTTTA
51518080 GGGTTTA
1 GGGTTTA
51518087 GGGTTTA
1 GGGTTTA
51518094 GGGTTTA
1 GGGTTTA
51518101 GGGTTTA
1 GGGTTTA
51518108 GGGTTTA
1 GGGTTTA
51518115 GGGTTTA
1 GGGTTTA
51518122 GGGTTTA
1 GGGTTTA
51518129 GGGTTTA
1 GGGTTTA
51518136 GGGTTTA
1 GGGTTTA
51518143 GGGTTTA
1 GGGTTTA
51518150 GGGTTTA
1 GGGTTTA
51518157 GGGTTTA
1 GGGTTTA
51518164 GGGTTTA
1 GGGTTTA
51518171 GGGTTTA
1 GGGTTTA
51518178 GGGTTTA
1 GGGTTTA
51518185 GGGTTTA
1 GGGTTTA
51518192 GGGTTTA
1 GGGTTTA
51518199 GGGTTTA
1 GGGTTTA
51518206 GGGTTTA
1 GGGTTTA
51518213 GGGTTTA
1 GGGTTTA
51518220 GGGTTTA
1 GGGTTTA
51518227 GGGTTTA
1 GGGTTTA
51518234 GGGTTTA
1 GGGTTTA
51518241 GGGTTTA
1 GGGTTTA
51518248 GGGTTTA
1 GGGTTTA
51518255 GGG-TTA
1 GGGTTTA
51518261 GGGTTTA
1 GGGTTTA
51518268 GGGTTTA
1 GGGTTTA
51518275 GGGTTTA
1 GGGTTTA
51518282 GGGTTTA
1 GGGTTTA
51518289 GGGTTTA
1 GGGTTTA
51518296 GGGTTTA
1 GGGTTTA
51518303 GGGTTTA
1 GGGTTTA
51518310 GGGTTTA
1 GGGTTTA
51518317 GGGTTTA
1 GGGTTTA
51518324 GGGTTTA
1 GGGTTTA
51518331 GGGTTTA
1 GGGTTTA
51518338 GGGTTTA
1 GGGTTTA
51518345 GGGTTT-
1 GGGTTTA
51518351 GGGTTTA
1 GGGTTTA
51518358 GGGTTTA
1 GGGTTTA
51518365 GGGTTTA
1 GGGTTTA
51518372 GGGTTTA
1 GGGTTTA
51518379 GGGTTTA
1 GGGTTTA
51518386 GGGTTTA
1 GGGTTTA
51518393 GGGTTTA
1 GGGTTTA
51518400 GGGTTTA
1 GGGTTTA
51518407 GGGTTTA
1 GGGTTTA
51518414 GGGTTTA
1 GGGTTTA
51518421 GGGTTTA
1 GGGTTTA
51518428 GGGTTTA
1 GGGTTTA
51518435 GGGTTTA
1 GGGTTTA
51518442 GGGTTTA
1 GGGTTTA
51518449 GGGTTTA
1 GGGTTTA
51518456 GGGTTTA
1 GGGTTTA
51518463 GGGTTTA
1 GGGTTTA
51518470 GGGTTTA
1 GGGTTTA
51518477 GGGTTTA
1 GGGTTTA
51518484 GGGTTTA
1 GGGTTTA
51518491 GGGTTTA
1 GGGTTTA
51518498 GGGTTTA
1 GGGTTTA
51518505 GGGTTTTA
1 GGG-TTTA
51518513 GGGTTTA
1 GGGTTTA
51518520 GGGTTTA
1 GGGTTTA
51518527 GGGTTTTA
1 GGG-TTTA
51518535 GGGTTTA
1 GGGTTTA
51518542 GGGTTTA
1 GGGTTTA
51518549 GGGTTTA
1 GGGTTTA
51518556 GGGTTTA
1 GGGTTTA
51518563 GGGTTTA
1 GGGTTTA
51518570 GGGTTTA
1 GGGTTTA
51518577 GGGTTTA
1 GGGTTTA
51518584 -GGTTTA
1 GGGTTTA
51518590 GGGTTTA
1 GGGTTTA
51518597 GGGTTTA
1 GGGTTTA
51518604 GGG-TTA
1 GGGTTTA
51518610 GGGTTTA
1 GGGTTTA
51518617 GGGTTTA
1 GGGTTTA
51518624 GGGTTT-
1 GGGTTTA
51518630 GGGTTTA
1 GGGTTTA
51518637 GGGTTTA
1 GGGTTTA
51518644 GGGTTTA
1 GGGTTTA
51518651 GGGTTTA
1 GGGTTTA
51518658 GGGTTTA
1 GGGTTTA
51518665 GGGTTTA
1 GGGTTTA
51518672 GGGTTTA
1 GGGTTTA
51518679 GGGTTTA
1 GGGTTTA
51518686 GGGTTTA
1 GGGTTTA
51518693 GGGTTTA
1 GGGTTTA
51518700 GGGTTTA
1 GGGTTTA
51518707 -GG-TTA
1 GGGTTTA
51518712 GGGTTTA
1 GGGTTTA
51518719 GGGTTTA
1 GGGTTTA
51518726 GGGTTTA
1 GGGTTTA
51518733 GGGTTTA
1 GGGTTTA
51518740 GGGTTTA
1 GGGTTTA
51518747 GGGTTTA
1 GGGTTTA
51518754 GGGTTTTTA
1 GGG--TTTA
51518763 GGGTTTA
1 GGGTTTA
51518770 GGGTTTA
1 GGGTTTA
51518777 GGGTTTA
1 GGGTTTA
51518784 GGGTTTTA
1 GGG-TTTA
51518792 GGGTTTA
1 GGGTTTA
51518799 GGGTTTA
1 GGGTTTA
51518806 GGGTTTA
1 GGGTTTA
51518813 GGGTTTA
1 GGGTTTA
51518820 GGGTTTA
1 GGGTTTA
51518827 GGGTTTA
1 GGGTTTA
51518834 GGGTTTA
1 GGGTTTA
51518841 GGGTTTA
1 GGGTTTA
51518848 GGGTTTA
1 GGGTTTA
51518855 GGGTTTA
1 GGGTTTA
51518862 GGGTTTA
1 GGGTTTA
51518869 GGGTTTA
1 GGGTTTA
51518876 GGGTTTA
1 GGGTTTA
51518883 GGGTTTA
1 GGGTTTA
51518890 GGGTTTA
1 GGGTTTA
51518897 GGGTTTA
1 GGGTTTA
51518904 GGGTTTA
1 GGGTTTA
51518911 GGGTTTA
1 GGGTTTA
51518918 GGG-TTA
1 GGGTTTA
51518924 GGGTTTA
1 GGGTTTA
51518931 GGGTTTTA
1 GGG-TTTA
51518939 GGGTTTA
1 GGGTTTA
51518946 GGGTTTA
1 GGGTTTA
51518953 GGGTTTA
1 GGGTTTA
51518960 --GTTTA
1 GGGTTTA
51518965 GGGTTTA
1 GGGTTTA
51518972 GGG-TTA
1 GGGTTTA
51518978 GGGTTTA
1 GGGTTTA
51518985 GGGTTTA
1 GGGTTTA
51518992 GGGTTTA
1 GGGTTTA
51518999 GGGTTTA
1 GGGTTTA
51519006 GGGTTTA
1 GGGTTTA
51519013 GGGTTTTA
1 GGG-TTTA
51519021 GGG-TTA
1 GGGTTTA
51519027 GGG-TTA
1 GGGTTTA
51519033 GGGTTTA
1 GGGTTTA
51519040 GGGTTTA
1 GGGTTTA
51519047 GGGTTTTA
1 GGG-TTTA
51519055 GGGTTTA
1 GGGTTTA
51519062 GGGTTTA
1 GGGTTTA
51519069 GGGTTTA
1 GGGTTTA
51519076 GGGTTTA
1 GGGTTTA
51519083 GGGTTTA
1 GGGTTTA
51519090 GGG-TTA
1 GGGTTTA
51519096 GGGTTTA
1 GGGTTTA
51519103 GGGTTTA
1 GGGTTTA
51519110 GGGTTTA
1 GGGTTTA
51519117 GGGTTTA
1 GGGTTTA
51519124 GGGTTTA
1 GGGTTTA
51519131 GGGTTTA
1 GGGTTTA
51519138 GGGTTTA
1 GGGTTTA
51519145 -GGTTTA
1 GGGTTTA
51519151 GGGTTTTA
1 GGG-TTTA
51519159 GGGTTTA
1 GGGTTTA
51519166 GGGTTTA
1 GGGTTTA
51519173 GGGTTTA
1 GGGTTTA
51519180 GGGTTTA
1 GGGTTTA
51519187 GGGTTTA
1 GGGTTTA
51519194 GGGTTTA
1 GGGTTTA
51519201 GGGTTTA
1 GGGTTTA
51519208 GGGTTTA
1 GGGTTTA
51519215 GGGTTTA
1 GGGTTTA
51519222 GGGTTTA
1 GGGTTTA
51519229 GGGTTTA
1 GGGTTTA
51519236 GGGTTTA
1 GGGTTTA
51519243 GGGTTTA
1 GGGTTTA
51519250 GGGTTTA
1 GGGTTTA
51519257 GGGTTTA
1 GGGTTTA
51519264 GGGTTTA
1 GGGTTTA
51519271 GGGTTTA
1 GGGTTTA
51519278 GGGTTTA
1 GGGTTTA
51519285 GGGTTTA
1 GGGTTTA
51519292 GGG--TA
1 GGGTTTA
51519297 GGG-TTA
1 GGGTTTA
51519303 GGGTTTA
1 GGGTTTA
51519310 GGGTTTA
1 GGGTTTA
51519317 GGGTTTA
1 GGGTTTA
51519324 GGGTTTA
1 GGGTTTA
51519331 GGGTTTA
1 GGGTTTA
51519338 GGGTTTA
1 GGGTTTA
51519345 -GGTTTA
1 GGGTTTA
51519351 GGGTTTA
1 GGGTTTA
51519358 GGGTTTA
1 GGGTTTA
51519365 GGGTTTA
1 GGGTTTA
51519372 GGGTTTA
1 GGGTTTA
51519379 GGGTTTA
1 GGGTTTA
51519386 GGGTTTA
1 GGGTTTA
51519393 GGGTTTTA
1 GGG-TTTA
51519401 GGGTTTA
1 GGGTTTA
51519408 GGGTTTA
1 GGGTTTA
51519415 GGGTTTA
1 GGGTTTA
51519422 GGGTTTA
1 GGGTTTA
51519429 GGGTTTA
1 GGGTTTA
51519436 GGGTTTA
1 GGGTTTA
51519443 GGGTTTA
1 GGGTTTA
51519450 GGGTTTA
1 GGGTTTA
51519457 GGGTTTA
1 GGGTTTA
51519464 GGGTTTA
1 GGGTTTA
51519471 GGG-TTA
1 GGGTTTA
51519477 GGGTTTA
1 GGGTTTA
51519484 GGGTTTA
1 GGGTTTA
51519491 GGGTTTA
1 GGGTTTA
51519498 GGGTTTA
1 GGGTTTA
51519505 GGGTTTA
1 GGGTTTA
51519512 GGGTTTA
1 GGGTTTA
51519519 GGGTTTA
1 GGGTTTA
51519526 GGGTTTA
1 GGGTTTA
51519533 GGGTTTA
1 GGGTTTA
51519540 GGGTTTA
1 GGGTTTA
51519547 GGGTTTA
1 GGGTTTA
51519554 GGGTTTA
1 GGGTTTA
51519561 GGGTTTA
1 GGGTTTA
51519568 GGGTTTA
1 GGGTTTA
51519575 GGGTTTA
1 GGGTTTA
51519582 GGGTTTA
1 GGGTTTA
51519589 GGGTTTA
1 GGGTTTA
51519596 GGGTTTA
1 GGGTTTA
51519603 GGGTTTA
1 GGGTTTA
51519610 GGGTTTA
1 GGGTTTA
51519617 GGGTTTA
1 GGGTTTA
51519624 -GGTTTA
1 GGGTTTA
51519630 GGGTTTA
1 GGGTTTA
51519637 GGGTTTA
1 GGGTTTA
51519644 GGGTTTA
1 GGGTTTA
51519651 GGGTTTTA
1 GGG-TTTA
51519659 GGGTTTA
1 GGGTTTA
51519666 GGGTTTA
1 GGGTTTA
51519673 GGGTTTA
1 GGGTTTA
51519680 GGGTTTA
1 GGGTTTA
51519687 GGG-TTA
1 GGGTTTA
51519693 -GG-TTA
1 GGGTTTA
51519698 GGGTTTA
1 GGGTTTA
51519705 GGGTTTA
1 GGGTTTA
51519712 GGGTTTA
1 GGGTTTA
51519719 GGGTTTA
1 GGGTTTA
51519726 GGGTTTA
1 GGGTTTA
51519733 GGGTTTA
1 GGGTTTA
51519740 GGGTTTA
1 GGGTTTA
51519747 GGGTTTA
1 GGGTTTA
51519754 GGGTTTA
1 GGGTTTA
51519761 GGGTTTA
1 GGGTTTA
51519768 GGGTTTA
1 GGGTTTA
51519775 GGGTTTA
1 GGGTTTA
51519782 -GGTTTA
1 GGGTTTA
51519788 GGGTTTA
1 GGGTTTA
51519795 GGGTTTA
1 GGGTTTA
51519802 GGGTTTA
1 GGGTTTA
51519809 GGGTTT-
1 GGGTTTA
51519815 GGGTTTA
1 GGGTTTA
51519822 GGGTTTA
1 GGGTTTA
51519829 GGGTTTA
1 GGGTTTA
51519836 GGGTTTA
1 GGGTTTA
51519843 GGGTTTTA
1 GGG-TTTA
51519851 GGGTTTA
1 GGGTTTA
51519858 GGGTTTA
1 GGGTTTA
51519865 -GGTTTA
1 GGGTTTA
51519871 GGGTTTA
1 GGGTTTA
51519878 -GGTTTA
1 GGGTTTA
51519884 GGGTTTA
1 GGGTTTA
51519891 GGGTTTA
1 GGGTTTA
51519898 GGGTTTA
1 GGGTTTA
51519905 GGGTTTA
1 GGGTTTA
51519912 GGGTTTA
1 GGGTTTA
51519919 GGGTTTA
1 GGGTTTA
51519926 GGGTTTA
1 GGGTTTA
51519933 GGGTTTA
1 GGGTTTA
51519940 GGG-TTA
1 GGGTTTA
51519946 -GGTTTA
1 GGGTTTA
51519952 GGGTTTA
1 GGGTTTA
51519959 GGGTTTA
1 GGGTTTA
*
51519966 GGGTTTTTT
1 GGG--TTTA
51519975 GGGTTTA
1 GGGTTTA
51519982 GGGTTTA
1 GGGTTTA
51519989 GGGTTTA
1 GGGTTTA
51519996 GGGTTTA
1 GGGTTTA
51520003 GGGTTTA
1 GGGTTTA
51520010 GGGTTTA
1 GGGTTTA
51520017 GGGTTTA
1 GGGTTTA
51520024 GGGTTTA
1 GGGTTTA
51520031 GGGTTTA
1 GGGTTTA
51520038 GGGTTTA
1 GGGTTTA
51520045 GGGTTTA
1 GGGTTTA
51520052 -GGTTTA
1 GGGTTTA
51520058 GGGTTTA
1 GGGTTTA
51520065 GGGTTTA
1 GGGTTTA
51520072 GGGTTTA
1 GGGTTTA
51520079 GGGTTTA
1 GGGTTTA
51520086 GGGTTTA
1 GGGTTTA
51520093 GGGTTTA
1 GGGTTTA
51520100 GGGTTTA
1 GGGTTTA
51520107 GGGTTTA
1 GGGTTTA
51520114 GGGTTTA
1 GGGTTTA
51520121 GGGTTTA
1 GGGTTTA
51520128 GGGTTTA
1 GGGTTTA
51520135 GGGTTTA
1 GGGTTTA
51520142 GGG-TTA
1 GGGTTTA
51520148 GGGTTTA
1 GGGTTTA
51520155 GGGTTTA
1 GGGTTTA
51520162 GGGTTTA
1 GGGTTTA
51520169 GGGTTTA
1 GGGTTTA
51520176 GGGTTTA
1 GGGTTTA
51520183 GGGTTTA
1 GGGTTTA
51520190 GGGTTTA
1 GGGTTTA
51520197 GGGTTTA
1 GGGTTTA
51520204 GGGTTTA
1 GGGTTTA
51520211 GGGTTTA
1 GGGTTTA
51520218 GGGTTTA
1 GGGTTTA
51520225 GGGTTTA
1 GGGTTTA
51520232 GGGTTTA
1 GGGTTTA
51520239 GGGTTTA
1 GGGTTTA
51520246 GGGTTTA
1 GGGTTTA
51520253 GGG-TTA
1 GGGTTTA
51520259 GGGTTTA
1 GGGTTTA
51520266 GGGTTTA
1 GGGTTTA
51520273 GGGTTTA
1 GGGTTTA
51520280 GGGTTTA
1 GGGTTTA
51520287 GGGTTTA
1 GGGTTTA
51520294 GGGTTTA
1 GGGTTTA
51520301 GGGTTTA
1 GGGTTTA
51520308 GGGTTTA
1 GGGTTTA
51520315 GGGTTTA
1 GGGTTTA
51520322 GGGTTTA
1 GGGTTTA
51520329 GGGTTTA
1 GGGTTTA
51520336 GGGTTTA
1 GGGTTTA
51520343 GGGTTTA
1 GGGTTTA
51520350 GGGTTTA
1 GGGTTTA
51520357 GGGTTTTTA
1 GGG--TTTA
51520366 GGGTTTA
1 GGGTTTA
51520373 GGGTTTA
1 GGGTTTA
51520380 GGGTTTA
1 GGGTTTA
51520387 GGGTTTA
1 GGGTTTA
51520394 GGGTTTA
1 GGGTTTA
51520401 GGGTTTA
1 GGGTTTA
51520408 GGGTTTA
1 GGGTTTA
51520415 GGGTTTA
1 GGGTTTA
51520422 GGGTTTA
1 GGGTTTA
51520429 GGGTTTA
1 GGGTTTA
51520436 GGGTTTA
1 GGGTTTA
*
51520443 GGGGTCCTA
1 -GGGT-TTA
*
51520452 -GGTCTA
1 GGGTTTA
*
51520458 GGGTCTA
1 GGGTTTA
*
51520465 GGGTAGCTA
1 GGGT--TTA
*
51520474 GGCGTCTA
1 GG-GTTTA
51520482 GGGTTCTA
1 GGGTT-TA
*
51520490 GGGTCTA
1 GGGTTTA
51520497 GGGTTCTA
1 GGGTT-TA
*
51520505 GGGTCTA
1 GGGTTTA
*
51520512 GGGTCTA
1 GGGTTTA
*
51520519 GGGTCTA
1 GGGTTTA
51520526 GGGTCTATTA
1 GGG--T-TTA
**
51520536 GGGTCTCGG
1 GGGT-T-TA
*
51520545 GGGTCTA
1 GGGTTTA
*
51520552 GGGTCTA
1 GGGTTTA
*
51520559 GGGTCTA
1 GGGTTTA
*
51520566 TGGGTCTA
1 -GGGTTTA
*
51520574 GGGTCTA
1 GGGTTTA
*
51520581 GGGTCTA
1 GGGTTTA
*
51520588 GGGTCTA
1 GGGTTTA
*
51520595 GGGTCTA
1 GGGTTTA
*
51520602 GGGTCTA
1 GGGTTTA
*
51520609 GGGTCTA
1 GGGTTTA
*
51520616 GGGTCTA
1 GGGTTTA
*
51520623 GGGTCTA
1 GGGTTTA
*
51520630 GGGTCTA
1 GGGTTTA
*
51520637 GGTGTCTA
1 GG-GTTTA
51520645 GGGTTCT-
1 GGGTT-TA
*
51520652 GGGTCTA
1 GGGTTTA
*
51520659 GGGTCTA
1 GGGTTTA
*
51520666 -GGTCTA
1 GGGTTTA
*
51520672 -GGTCTA
1 GGGTTTA
*
51520678 GGGTCTA
1 GGGTTTA
*
51520685 GGGTCTA
1 GGGTTTA
*
51520692 GGGTCTA
1 GGGTTTA
*
51520699 GGGTCTA
1 GGGTTTA
51520706 -GG-TT-
1 GGGTTTA
*
51520710 GGGTCT-
1 GGGTTTA
*
51520716 GGGTCTA
1 GGGTTTA
*
51520723 GGGTCTA
1 GGGTTTA
*
51520730 GGGTCTA
1 GGGTTTA
*
51520737 GGGTCTA
1 GGGTTTA
*
51520744 GGGTCTA
1 GGGTTTA
*
51520751 GGGTCTA
1 GGGTTTA
*
51520758 GGGTCTA
1 GGGTTTA
*
51520765 GGGTCTA
1 GGGTTTA
*
51520772 GGGTCT-
1 GGGTTTA
*
51520778 GGGTTAGCTC
1 GGGTT---TA
*
51520788 GGGTCTA
1 GGGTTTA
*
51520795 GGTGTCTA
1 GG-GTTTA
*
51520803 GGTCGTCTA
1 GG--GTTTA
*
51520812 GGGTCTA
1 GGGTTTA
*
51520819 GGGTGCCTA
1 GGGT--TTA
*
51520828 GGGTCTA
1 GGGTTTA
*
51520835 GGG-TCA
1 GGGTTTA
*
51520841 -GG-CTA
1 GGGTTTA
*
51520846 GGGTCTA
1 GGGTTTA
*
51520853 TGGGTCTA
1 -GGGTTTA
*
51520861 GGGTCTAA
1 GGGT-TTA
*
51520869 GGGTCTA
1 GGGTTTA
*
51520876 GGGTCTA
1 GGGTTTA
*
51520883 GGGTCTATC
1 GGGT-T-TA
*
51520892 GGGTCTA
1 GGGTTTA
*
51520899 GGGGTCTA
1 -GGGTTTA
*
51520907 GGGTCTA
1 GGGTTTA
*
51520914 GGGTCTA
1 GGGTTTA
*
51520921 GGGTCTA
1 GGGTTTA
* *
51520928 GTGTCTA
1 GGGTTTA
*
51520935 GGGTCTA
1 GGGTTTA
*
51520942 GGGTCTA
1 GGGTTTA
*
51520949 GGG-CTA
1 GGGTTTA
*
51520955 -GGTCTA
1 GGGTTTA
* *
51520961 TGGTCTA
1 GGGTTTA
*
51520968 GGGTCTA
1 GGGTTTA
*
51520975 TGGGTCTA
1 -GGGTTTA
*
51520983 GGGTCTA
1 GGGTTTA
*
51520990 GGGTCTA
1 GGGTTTA
*
51520997 GGGTCTA
1 GGGTTTA
*
51521004 GGGTCTA
1 GGGTTTA
51521011 GGGTCTTA
1 GGGT-TTA
*
51521019 GGGTCTA
1 GGGTTTA
51521026 -GG-TTA
1 GGGTTTA
*
51521031 -GGTCTA
1 GGGTTTA
**
51521037 GGGCCTA
1 GGGTTTA
*
51521044 GGGTCTA
1 GGGTTTA
*
51521051 GGGTCTA
1 GGGTTTA
51521058 GGG-TTA
1 GGGTTTA
*
51521064 GGGTCTA
1 GGGTTTA
* *
51521071 AGGTCTA
1 GGGTTTA
51521078 TGGG-TTA
1 -GGGTTTA
*
51521085 GGGTCTA
1 GGGTTTA
*
51521092 GGGTCTA
1 GGGTTTA
*
51521099 -GGTCTA
1 GGGTTTA
*
51521105 GGG-TCA
1 GGGTTTA
*
51521111 GGGTCTA
1 GGGTTTA
*
51521118 GGGTCTA
1 GGGTTTA
*
51521125 GGGTCTA
1 GGGTTTA
*
51521132 TGGGTCTA
1 -GGGTTTA
*
51521140 GGGTCTA
1 GGGTTTA
*
51521147 GGGTCTA
1 GGGTTTA
*
51521154 GGGTCCTA
1 GGGT-TTA
*
51521162 GGGTCTA
1 GGGTTTA
*
51521169 GGGTCTA
1 GGGTTTA
51521176 GGGTTCTA
1 GGGTT-TA
*
51521184 GGGTCTA
1 GGGTTTA
*
51521191 GGGTCTA
1 GGGTTTA
*
51521198 GGGTCCTA
1 GGGT-TTA
*
51521206 GGGTCTA
1 GGGTTTA
*
51521213 GGGTCTA
1 GGGTTTA
*
51521220 GGGTCTA
1 GGGTTTA
*
51521227 GTGGGTCTA
1 --GGGTTTA
*
51521236 GGGTCTA
1 GGGTTTA
*
51521243 GGGTCTA
1 GGGTTTA
*
51521250 GGGTCTA
1 GGGTTTA
51521257 GGG--T-
1 GGGTTTA
*
51521261 GGGTCTA
1 GGGTTTA
*
51521268 GGGTCTA
1 GGGTTTA
*
51521275 GGGTCTA
1 GGGTTTA
*
51521282 GGGTCTA
1 GGGTTTA
51521289 GGGTTCTA
1 GGGTT-TA
*
51521297 GGGTCTA
1 GGGTTTA
*
51521304 GGGTCTA
1 GGGTTTA
*
51521311 GGGTCTA
1 GGGTTTA
*
51521318 GGGTCTA
1 GGGTTTA
*
51521325 GGGTCTA
1 GGGTTTA
*
51521332 -GGTCTA
1 GGGTTTA
51521338 GGG-TTA
1 GGGTTTA
*
51521344 GGGTCTA
1 GGGTTTA
*
51521351 GGGTCTA
1 GGGTTTA
*
51521358 GGGTCTA
1 GGGTTTA
*
51521365 -GGTCTA
1 GGGTTTA
*
51521371 GGTGGGTCTA
1 ---GGGTTTA
*
51521381 GGGTCTA
1 GGGTTTA
*
51521388 GGGTCTA
1 GGGTTTA
*
51521395 GGGTCTA
1 GGGTTTA
*
51521402 GGGTCTAGGA
1 GGGT-T--TA
*
51521412 GGGTCTA
1 GGGTTTA
*
51521419 GGG--TC
1 GGGTTTA
*
51521424 GGGTCTA
1 GGGTTTA
*
51521431 GGGTCTA
1 GGGTTTA
*
51521438 --GTCTA
1 GGGTTTA
51521443 GGGTCTATTA
1 GGG--T-TTA
51521453 GGGTTTTA
1 GGG-TTTA
51521461 GGGTTTA
1 GGGTTTA
51521468 GGGTTTA
1 GGGTTTA
51521475 GGGTTTA
1 GGGTTTA
51521482 GGGTTTA
1 GGGTTTA
51521489 GGGTTTA
1 GGGTTTA
51521496 GGGTTTA
1 GGGTTTA
51521503 GGGTTTA
1 GGGTTTA
51521510 GGGTTTA
1 GGGTTTA
51521517 GGGTTTA
1 GGGTTTA
51521524 GGGTTTA
1 GGGTTTA
51521531 GGGTTTA
1 GGGTTTA
51521538 GGGTTTA
1 GGGTTTA
51521545 GGGTTTA
1 GGGTTTA
51521552 GGGTTTA
1 GGGTTTA
51521559 GGGTTTA
1 GGGTTTA
51521566 GGGTTTA
1 GGGTTTA
51521573 GGGTTTA
1 GGGTTTA
51521580 GGGTTTA
1 GGGTTTA
51521587 GGG-TTA
1 GGGTTTA
51521593 GGGTTTA
1 GGGTTTA
51521600 GGGTTTA
1 GGGTTTA
51521607 GGGTTTA
1 GGGTTTA
51521614 TTGGGTTTA
1 --GGGTTTA
51521623 GGGTTTA
1 GGGTTTA
51521630 GGGTTTA
1 GGGTTTA
51521637 GGGTTTTAA
1 GGG-TTT-A
51521646 GGGGTTTA
1 -GGGTTTA
51521654 GGGTTTA
1 GGGTTTA
51521661 GGGTTTA
1 GGGTTTA
51521668 GGGTTTAA
1 GGGTTT-A
51521676 GGGTTTA
1 GGGTTTA
51521683 GGGTTTA
1 GGGTTTA
51521690 GGGTTTA
1 GGGTTTA
51521697 GGGTTTA
1 GGGTTTA
51521704 GGGTTTA
1 GGGTTTA
51521711 GGGTTTTA
1 GGG-TTTA
51521719 GGG-TT-
1 GGGTTTA
51521724 GGGTTTA
1 GGGTTTA
51521731 GGGTTTA
1 GGGTTTA
51521738 GGGTTTA
1 GGGTTTA
51521745 -GGTTTA
1 GGGTTTA
51521751 GGGTTTTTA
1 GGG--TTTA
51521760 GGGTTTA
1 GGGTTTA
51521767 GGG-TTA
1 GGGTTTA
51521773 GGGTTTA
1 GGGTTTA
51521780 GGGTTTA
1 GGGTTTA
51521787 GGGTTTA
1 GGGTTTA
51521794 GGGTTTA
1 GGGTTTA
51521801 GGGGTTTA
1 -GGGTTTA
51521809 GGGTTTA
1 GGGTTTA
51521816 GGGTTTA
1 GGGTTTA
51521823 GGGTTTA
1 GGGTTTA
51521830 GGGTTTA
1 GGGTTTA
51521837 GGGTTTA
1 GGGTTTA
51521844 GGG--T-
1 GGGTTTA
*
51521848 GGTTTTA
1 GGGTTTA
51521855 GGGTTTA
1 GGGTTTA
51521862 GGGTTTA
1 GGGTTTA
51521869 GGGTTTA
1 GGGTTTA
51521876 GGGTTTTA
1 GGG-TTTA
51521884 GGGTTTA
1 GGGTTTA
51521891 GGGTTTTA
1 GGG-TTTA
51521899 GGGTTTA
1 GGGTTTA
51521906 -GGTTTA
1 GGGTTTA
51521912 GGGTTTA
1 GGGTTTA
51521919 GGGGTTTA
1 -GGGTTTA
51521927 GGGTTTTA
1 GGG-TTTA
51521935 GGGTTTA
1 GGGTTTA
51521942 GGGTTTTA
1 GGG-TTTA
51521950 GGGTTTA
1 GGGTTTA
51521957 GGGTTTTA
1 GGG-TTTA
51521965 GGGTTTA
1 GGGTTTA
51521972 GGGTTTA
1 GGGTTTA
51521979 GGGTTTA
1 GGGTTTA
51521986 GGG-TTA
1 GGGTTTA
51521992 GGGTTTA
1 GGGTTTA
51521999 GGGTTTTA
1 GGG-TTTA
51522007 GGGTTTTA
1 GGG-TTTA
51522015 GGGTTTTA
1 GGG-TTTA
51522023 GGG-TTA
1 GGGTTTA
51522029 GGGTTTTTA
1 GGG--TTTA
51522038 -GGTTTA
1 GGGTTTA
51522044 GGGTTTA
1 GGGTTTA
51522051 GGGTTTA
1 GGGTTTA
51522058 GGGTTTA
1 GGGTTTA
51522065 GGGTTTTA
1 GGG-TTTA
51522073 GGGTTTTA
1 GGG-TTTA
51522081 GGGTTTTTA
1 GGG--TTTA
51522090 GGGTTTTA
1 GGG-TTTA
51522098 GGGTTTA
1 GGGTTTA
51522105 GGGTTTA
1 GGGTTTA
51522112 GGGTTTA
1 GGGTTTA
51522119 GGGTTTTTA
1 GGG--TTTA
51522128 GGGTTTTTA
1 GGG--TTTA
51522137 GGGTTTTA
1 GGG-TTTA
51522145 GGGTTTA
1 GGGTTTA
51522152 -GGTTTA
1 GGGTTTA
51522158 GGGTTTA
1 GGGTTTA
*
51522165 GGTTTTA
1 GGGTTTA
51522172 GGGTTTTAA
1 GGG-TTT-A
51522181 GGGTTTA
1 GGGTTTA
51522188 GGGTTTA
1 GGGTTTA
51522195 GGGTTTTA
1 GGG-TTTA
51522203 GGGTTTA
1 GGGTTTA
*
51522210 GGGTTTT
1 GGGTTTA
51522217 GGGTTTTA
1 GGG-TTTA
*
51522225 GGGTTTTT
1 GGG-TTTA
51522233 GGGTTTA
1 GGGTTTA
51522240 GGGTTTA
1 GGGTTTA
51522247 GGGTTTA
1 GGGTTTA
51522254 GGGTTTA
1 GGGTTTA
51522261 GGGTTTA
1 GGGTTTA
51522268 GGGTTTA
1 GGGTTTA
51522275 -GGTTTA
1 GGGTTTA
51522281 GGGTTTTA
1 GGG-TTTA
51522289 GGGTTTTA
1 GGG-TTTA
51522297 GGGTTTA
1 GGGTTTA
51522304 GGGTTTA
1 GGGTTTA
51522311 GGGGTTTA
1 -GGGTTTA
51522319 GGGTTTA
1 GGGTTTA
51522326 GGGTTTTA
1 GGG-TTTA
51522334 GGGTTTA
1 GGGTTTA
51522341 GGGTTTA
1 GGGTTTA
51522348 GGGTTTA
1 GGGTTTA
51522355 GGGTTT-
1 GGGTTTA
51522361 GGGTTTA
1 GGGTTTA
51522368 GGGTTTA
1 GGGTTTA
51522375 GGGTTTTA
1 GGG-TTTA
51522383 GGGTTTTA
1 GGG-TTTA
51522391 GGGTTTA
1 GGGTTTA
51522398 GGGTTTTA
1 GGG-TTTA
*
51522406 GGTTTTA
1 GGGTTTA
51522413 GGG-TTA
1 GGGTTTA
51522419 GGGTTTA
1 GGGTTTA
51522426 GGGTTTTAA
1 GGG-TTT-A
51522435 GGG-TTA
1 GGGTTTA
51522441 GGGTTTA
1 GGGTTTA
51522448 GGGTTTA
1 GGGTTTA
51522455 GGGTTTA
1 GGGTTTA
51522462 GGGTTTA
1 GGGTTTA
51522469 GGGTTTA
1 GGGTTTA
51522476 GGGTTTA
1 GGGTTTA
51522483 GGGTTTA
1 GGGTTTA
51522490 GGG-TT-
1 GGGTTTA
51522495 -GGTTTA
1 GGGTTTA
51522501 GGGTTTA
1 GGGTTTA
51522508 GGGTTTA
1 GGGTTTA
51522515 GGGTTTTTA
1 GGG--TTTA
51522524 GGGTTTA
1 GGGTTTA
51522531 GGGTTTA
1 GGGTTTA
51522538 GGGTTTA
1 GGGTTTA
51522545 GGGTTTTA
1 GGG-TTTA
51522553 GGGTTTA
1 GGGTTTA
51522560 GGGTTTA
1 GGGTTTA
51522567 GGGTTTA
1 GGGTTTA
51522574 GGGTTTA
1 GGGTTTA
51522581 GGGTTTA
1 GGGTTTA
51522588 GGGTTTA
1 GGGTTTA
51522595 GGGTTTA
1 GGGTTTA
51522602 GGGTTTA
1 GGGTTTA
51522609 GGGTTTA
1 GGGTTTA
51522616 GGGTTTA
1 GGGTTTA
51522623 GGGTTTA
1 GGGTTTA
51522630 GGGTTTA
1 GGGTTTA
51522637 GGGTTTTTA
1 GGG--TTTA
51522646 GGGTTTA
1 GGGTTTA
51522653 GGG-TTA
1 GGGTTTA
51522659 GGGTTTA
1 GGGTTTA
51522666 GGGTTTA
1 GGGTTTA
51522673 GGGTTTTA
1 GGG-TTTA
51522681 GGGTTTA
1 GGGTTTA
51522688 GGGTTTAGTA
1 GGG-TT--TA
51522698 GGGTTTA
1 GGGTTTA
51522705 GGGTTTTA
1 GGG-TTTA
51522713 GGGTTTTA
1 GGG-TTTA
51522721 -GGTTTA
1 GGGTTTA
51522727 GGGTTTTA
1 GGG-TTTA
51522735 GGGTTTA
1 GGGTTTA
51522742 GGGTTTA
1 GGGTTTA
51522749 GGGTTTTA
1 GGG-TTTA
51522757 GGGTTTTA
1 GGG-TTTA
51522765 GGGTTTA
1 GGGTTTA
51522772 GGGTTTTTTA
1 GGG---TTTA
51522782 GGGTTTAAA
1 GGGTTT--A
51522791 GGGTTT-
1 GGGTTTA
51522797 --GTTTA
1 GGGTTTA
51522802 GGGTTTA
1 GGGTTTA
51522809 -GGTTTA
1 GGGTTTA
51522815 GGGTTTA
1 GGGTTTA
51522822 GGGTTTA
1 GGGTTTA
51522829 GGGTTTA
1 GGGTTTA
51522836 GGGTTTTTA
1 GGG--TTTA
51522845 GGGTTTA
1 GGGTTTA
51522852 GGGTTTA
1 GGGTTTA
51522859 GGGTTTA
1 GGGTTTA
51522866 GGGTTTA
1 GGGTTTA
51522873 GGGTTTA
1 GGGTTTA
51522880 GGGTTTTA
1 GGG-TTTA
51522888 GGGTTTA
1 GGGTTTA
51522895 GGGTTTA
1 GGGTTTA
51522902 GGGTTTA
1 GGGTTTA
51522909 GGGGTTTA
1 -GGGTTTA
51522917 GGGTTTA
1 GGGTTTA
51522924 GGGTTTA
1 GGGTTTA
51522931 GGGTTTA
1 GGGTTTA
51522938 GGGTTTA
1 GGGTTTA
51522945 GGGTTTA
1 GGGTTTA
51522952 GGGTTTA
1 GGGTTTA
51522959 GGGTTTA
1 GGGTTTA
51522966 GGGTTTA
1 GGGTTTA
51522973 GGGTTTA
1 GGGTTTA
51522980 GGGTTTA
1 GGGTTTA
51522987 GGGTTTA
1 GGGTTTA
51522994 GGGTTTAA
1 GGGTTT-A
51523002 GGGTTTA
1 GGGTTTA
51523009 GGGTTTTA
1 GGG-TTTA
51523017 GGGTTTA
1 GGGTTTA
51523024 GGGTTTATTA
1 GGG--T-TTA
51523034 GGGTTTA
1 GGGTTTA
51523041 GGGTTTA
1 GGGTTTA
51523048 GGGTTTTA
1 GGG-TTTA
51523056 -GG--TA
1 GGGTTTA
51523060 GGGTTTA
1 GGGTTTA
51523067 GGGTTTA
1 GGGTTTA
51523074 GGGTTTA
1 GGGTTTA
51523081 GGGTTTTA
1 GGG-TTTA
51523089 GGGTTTTA
1 GGG-TTTA
51523097 GGGTTTA
1 GGGTTTA
51523104 GGGTTTA
1 GGGTTTA
51523111 GGGTTTTA
1 GGG-TTTA
51523119 GGGTTTTA
1 GGG-TTTA
51523127 GGGTTTA
1 GGGTTTA
51523134 GGGTTTA
1 GGGTTTA
51523141 GGGTTTA
1 GGGTTTA
51523148 GGGTTTA
1 GGGTTTA
*
51523155 GGGTTTTT
1 GGG-TTTA
51523163 GGGTTTA
1 GGGTTTA
51523170 GGGTTTTAA
1 GGG-TTT-A
51523179 GGGTTTTA
1 GGG-TTTA
51523187 GGGTTTA
1 GGGTTTA
51523194 GGGTTTTTA
1 GGG--TTTA
51523203 GGGTTTA
1 GGGTTTA
51523210 GGGTTTTA
1 GGG-TTTA
51523218 GGGTTTA
1 GGGTTTA
51523225 GGGGTTTAA
1 -GGGTTT-A
51523234 GGGTTTA
1 GGGTTTA
51523241 GGGTTTTA
1 GGG-TTTA
51523249 GGGTTTA
1 GGGTTTA
51523256 GGGTTTA
1 GGGTTTA
51523263 GGGTTTA
1 GGGTTTA
51523270 GGGTTTA
1 GGGTTTA
51523277 GGGTTTGTA
1 GGG-TT-TA
51523286 GGGTTTA
1 GGGTTTA
51523293 GGGTTTA
1 GGGTTTA
51523300 GGGTTTAGGA
1 GGGTTT---A
51523310 GGGTTTTA
1 GGG-TTTA
51523318 GGGTTTTA
1 GGG-TTTA
51523326 GGGTTTA
1 GGGTTTA
51523333 GGGTTTA
1 GGGTTTA
51523340 GGGTTTA
1 GGGTTTA
51523347 GGGGTTTA
1 -GGGTTTA
51523355 GGGTTTTA
1 GGG-TTTA
51523363 GGGTTTTTA
1 GGG--TTTA
51523372 GGGTTTA
1 GGGTTTA
51523379 -GGTTTA
1 GGGTTTA
51523385 GGGTTTA
1 GGGTTTA
51523392 GGGTTTA
1 GGGTTTA
51523399 GGGTTTA
1 GGGTTTA
51523406 -GGTTTA
1 GGGTTTA
51523412 GGGTTTA
1 GGGTTTA
51523419 GGGTTTA
1 GGGTTTA
51523426 GGGTTTA
1 GGGTTTA
51523433 GGGTTTA
1 GGGTTTA
51523440 TTGGGTTTA
1 --GGGTTTA
*
51523449 GGGTTTT
1 GGGTTTA
51523456 GGG-TTA
1 GGGTTTA
51523462 --GTTTA
1 GGGTTTA
51523467 GGGTTTTA
1 GGG-TTTA
51523475 GGGTTTTA
1 GGG-TTTA
51523483 GGGTTTA
1 GGGTTTA
51523490 GGGTTTTA
1 GGG-TTTA
51523498 GGGTTTTA
1 GGG-TTTA
51523506 GGGTTTA
1 GGGTTTA
51523513 GGGTTTA
1 GGGTTTA
51523520 GGGTTTA
1 GGGTTTA
51523527 GGG-TTA
1 GGGTTTA
51523533 GGGTTTA
1 GGGTTTA
51523540 GGGTTTA
1 GGGTTTA
51523547 GGGTTTTTA
1 GGG--TTTA
51523556 GGGTTTTA
1 GGG-TTTA
51523564 GGGTTTTA
1 GGG-TTTA
51523572 -GGTTTA
1 GGGTTTA
51523578 GGGTTTA
1 GGGTTTA
51523585 GGGTTTAA
1 GGGTTT-A
51523593 GGGTTTA
1 GGGTTTA
51523600 GGGTTTA
1 GGGTTTA
51523607 -GG--TA
1 GGGTTTA
51523611 GGGTTTA
1 GGGTTTA
51523618 GGGTTTA
1 GGGTTTA
51523625 GGGTTTA
1 GGGTTTA
*
51523632 GGGTTTG
1 GGGTTTA
51523639 GGGTTTA
1 GGGTTTA
51523646 GGGTTTA
1 GGGTTTA
51523653 GGG-TTA
1 GGGTTTA
51523659 GGGTTTA
1 GGGTTTA
51523666 GGGTTTAGA
1 GGGTTT--A
51523675 GGGTTTTA
1 GGG-TTTA
51523683 GGGTTTA
1 GGGTTTA
51523690 GGGTTT-
1 GGGTTTA
51523696 GGGTTTA
1 GGGTTTA
51523703 GGGTTT-
1 GGGTTTA
*
51523709 --TTTTA
1 GGGTTTA
51523714 GGGTTTA
1 GGGTTTA
51523721 -GGTTTA
1 GGGTTTA
51523727 GGGTTTA
1 GGGTTTA
51523734 GGGTTTTTTA
1 GGG---TTTA
51523744 GGGTTTA
1 GGGTTTA
51523751 GGGTTTA
1 GGGTTTA
51523758 GGGTTTTTA
1 GGG--TTTA
51523767 GGG-TTA
1 GGGTTTA
51523773 GGGTTTTA
1 GGG-TTTA
51523781 GGGTTTA
1 GGGTTTA
51523788 GGGTTTAA
1 GGGTTT-A
51523796 GGGTTTA
1 GGGTTTA
51523803 GGGTTTA
1 GGGTTTA
51523810 GGGTTTA
1 GGGTTTA
51523817 GGGTTTA
1 GGGTTTA
51523824 GGG--TA
1 GGGTTTA
51523829 GGGTTTTAGA
1 GGG-TTT--A
51523839 GGGTTTA
1 GGGTTTA
51523846 GGGTTTA
1 GGGTTTA
51523853 GGGTTTA
1 GGGTTTA
51523860 GGGGTTTA
1 -GGGTTTA
51523868 GGGTTTA
1 GGGTTTA
51523875 GGGTTTA
1 GGGTTTA
51523882 GGGTTTA
1 GGGTTTA
51523889 GGGTTTA
1 GGGTTTA
51523896 GGGTTTA
1 GGGTTTA
51523903 GGGTTTA
1 GGGTTTA
51523910 GGGTTTA
1 GGGTTTA
51523917 GGGTTTA
1 GGGTTTA
*
51523924 GGGTTTTT
1 GGG-TTTA
51523932 GGGTTTA
1 GGGTTTA
51523939 GGGTTTTA
1 GGG-TTTA
51523947 GGGTTTA
1 GGGTTTA
51523954 GGGTTTTTTA
1 GGG---TTTA
51523964 GGGTTTTA
1 GGG-TTTA
51523972 GGGTTTTA
1 GGG-TTTA
51523980 GGGTTTTA
1 GGG-TTTA
51523988 GGGTTTA
1 GGGTTTA
51523995 GGGTTTA
1 GGGTTTA
51524002 GGGTTTA
1 GGGTTTA
51524009 GGGTTTA
1 GGGTTTA
51524016 GGGTTTAA
1 GGGTTT-A
51524024 GGGTTTTA
1 GGG-TTTA
51524032 GGGTTTA
1 GGGTTTA
51524039 GGGTTTA
1 GGGTTTA
*
51524046 GGGTTTTG
1 GGG-TTTA
51524054 GGGTTTTA
1 GGG-TTTA
51524062 GGGTTTAGA
1 GGGTTT--A
51524071 GGGTTTTA
1 GGG-TTTA
51524079 GGGTTTA
1 GGGTTTA
51524086 GGGTTTTTTA
1 GGG---TTTA
51524096 GGGTTT-
1 GGGTTTA
51524102 -GGTTTA
1 GGGTTTA
51524108 GGGTTTA
1 GGGTTTA
51524115 GGGTTTA
1 GGGTTTA
51524122 GGGTTTA
1 GGGTTTA
51524129 GGGTTTA
1 GGGTTTA
51524136 GGG-TTA
1 GGGTTTA
51524142 GGGTTTA
1 GGGTTTA
51524149 GGGTTTA
1 GGGTTTA
51524156 GGGTTTTTA
1 GGG--TTTA
51524165 GGGTTTTA
1 GGG-TTTA
51524173 GGGTTTA
1 GGGTTTA
51524180 GGGTTTA
1 GGGTTTA
51524187 GGGTTTA
1 GGGTTTA
51524194 GGGTTTA
1 GGGTTTA
51524201 GGGTTTA
1 GGGTTTA
51524208 GGGTTTA
1 GGGTTTA
51524215 -GGTTTA
1 GGGTTTA
51524221 -GGTTTA
1 GGGTTTA
51524227 GGGTTTAA
1 GGGTTT-A
51524235 GGGTTTA
1 GGGTTTA
51524242 GGGTTTA
1 GGGTTTA
51524249 GGGTTTA
1 GGGTTTA
51524256 GGGTTTA
1 GGGTTTA
51524263 GGGTTTA
1 GGGTTTA
51524270 GGGTTTTTTA
1 GGG---TTTA
51524280 GGG-TTA
1 GGGTTTA
51524286 GGGTTTA
1 GGGTTTA
51524293 GGGTTTTA
1 GGG-TTTA
51524301 GGGTTTA
1 GGGTTTA
51524308 GGG-TTA
1 GGGTTTA
51524314 GGGTTTA
1 GGGTTTA
51524321 GGGTTTTA
1 GGG-TTTA
51524329 GGGTTTA
1 GGGTTTA
51524336 GGGTTTA
1 GGGTTTA
51524343 GGGTTTA
1 GGGTTTA
51524350 GGGTTTA
1 GGGTTTA
51524357 GGGTTTA
1 GGGTTTA
51524364 GGGTTTTGA
1 GGG-TTT-A
51524373 GGGGTTTA
1 -GGGTTTA
51524381 GGGTTTA
1 GGGTTTA
51524388 GGGTTTA
1 GGGTTTA
51524395 GGGGGGTTTA
1 ---GGGTTTA
51524405 GGGTTTA
1 GGGTTTA
51524412 GGGTTTA
1 GGGTTTA
51524419 GGGTTTA
1 GGGTTTA
51524426 GGGTTTA
1 GGGTTTA
51524433 GGGTTTA
1 GGGTTTA
51524440 GGGTTTA
1 GGGTTTA
51524447 GGGTTTTTA
1 GGG--TTTA
51524456 GGGTTTA
1 GGGTTTA
51524463 GGGTTT-
1 GGGTTTA
51524469 GGGTTTA
1 GGGTTTA
51524476 GGGTTTA
1 GGGTTTA
51524483 GGGTTTA
1 GGGTTTA
51524490 GGGTTTA
1 GGGTTTA
51524497 GGGTTTA
1 GGGTTTA
51524504 -GGTTTA
1 GGGTTTA
51524510 GGGTTTA
1 GGGTTTA
51524517 GGGTTTA
1 GGGTTTA
51524524 GGGTTTTA
1 GGG-TTTA
51524532 GGG---A
1 GGGTTTA
51524536 GGGTTTA
1 GGGTTTA
51524543 GGGTTTTA
1 GGG-TTTA
51524551 GGGTTTA
1 GGGTTTA
51524558 GGGTTTA
1 GGGTTTA
51524565 GGGTTTTA
1 GGG-TTTA
51524573 GGGTTTA
1 GGGTTTA
51524580 GGGTTTA
1 GGGTTTA
51524587 GGGTTTA
1 GGGTTTA
51524594 GGGTTTA
1 GGGTTTA
51524601 GGGTTTA
1 GGGTTTA
51524608 GGGTTTA
1 GGGTTTA
51524615 GGGTTTTA
1 GGG-TTTA
51524623 GGGTTTA
1 GGGTTTA
51524630 GGGTTTA
1 GGGTTTA
51524637 GGGTTTA
1 GGGTTTA
51524644 GGGTTTA
1 GGGTTTA
51524651 GGGGTTTA
1 -GGGTTTA
51524659 GGGTTTA
1 GGGTTTA
51524666 GGG-TTA
1 GGGTTTA
51524672 GGGTTTTA
1 GGG-TTTA
51524680 GGGTTT-
1 GGGTTTA
51524686 GGGTTTA
1 GGGTTTA
51524693 GGGTTTA
1 GGGTTTA
51524700 GGGTTTA
1 GGGTTTA
51524707 GGGTTTTTA
1 GGG--TTTA
51524716 GGGTTTTA
1 GGG-TTTA
51524724 GGGTTTA
1 GGGTTTA
51524731 GGGTTTA
1 GGGTTTA
51524738 GGGTTTA
1 GGGTTTA
51524745 GGGTTTA
1 GGGTTTA
51524752 GGGTTTTA
1 GGG-TTTA
51524760 GGGTTT-
1 GGGTTTA
51524766 GGGTTTTA
1 GGG-TTTA
51524774 GGGTTTA
1 GGGTTTA
51524781 GGGTTTA
1 GGGTTTA
51524788 GGGTTTTTA
1 GGG--TTTA
51524797 GGGTTTA
1 GGGTTTA
51524804 GGGTTTA
1 GGGTTTA
51524811 GGGTTTA
1 GGGTTTA
51524818 GGGTTTA
1 GGGTTTA
51524825 GGGTTTA
1 GGGTTTA
51524832 GGGTTTA
1 GGGTTTA
51524839 TGGGTTTA
1 -GGGTTTA
51524847 GGGTTTTA
1 GGG-TTTA
51524855 GGGTTTAA
1 GGGTTT-A
51524863 GGTGTTTA
1 GG-GTTTA
51524871 GGGTTTA
1 GGGTTTA
51524878 GGGTTTA
1 GGGTTTA
51524885 GGGTTTA
1 GGGTTTA
51524892 GGGTTTA
1 GGGTTTA
51524899 GGGTTTA
1 GGGTTTA
51524906 GGGTTTA
1 GGGTTTA
51524913 GGGTTTA
1 GGGTTTA
51524920 GGGTTTTA
1 GGG-TTTA
51524928 GGGTTTA
1 GGGTTTA
51524935 GGGTTTTA
1 GGG-TTTA
51524943 GGGTTTA
1 GGGTTTA
51524950 GGGTTTA
1 GGGTTTA
51524957 GGGTTTA
1 GGGTTTA
51524964 GGGTTTA
1 GGGTTTA
51524971 GGGTTTA
1 GGGTTTA
51524978 GGGTTTA
1 GGGTTTA
51524985 GGGGGTTTA
1 --GGGTTTA
*
51524994 GGGTTTG
1 GGGTTTA
51525001 GGGTTTAA
1 GGGTTT-A
51525009 GGGTTTA
1 GGGTTTA
51525016 GGGTTTA
1 GGGTTTA
51525023 GAGGTTTTA
1 G-GG-TTTA
51525032 GGGTTTA
1 GGGTTTA
51525039 GGGTTTA
1 GGGTTTA
51525046 -GGTTTA
1 GGGTTTA
51525052 GGGTTTA
1 GGGTTTA
51525059 GGGTTTA
1 GGGTTTA
51525066 GGGTTTA
1 GGGTTTA
51525073 GGGTTTTA
1 GGG-TTTA
51525081 GGGTTTA
1 GGGTTTA
51525088 GGGTTTA
1 GGGTTTA
51525095 GGGTTTA
1 GGGTTTA
51525102 GGGTTTA
1 GGGTTTA
51525109 GGGTTTA
1 GGGTTTA
51525116 GGGTTTA
1 GGGTTTA
51525123 GGGTTTA
1 GGGTTTA
51525130 GGGTTTA
1 GGGTTTA
51525137 GGGTTTA
1 GGGTTTA
51525144 GGG-TTA
1 GGGTTTA
51525150 GGGTTTTATTA
1 GGG---T-TTA
51525161 GGGTTTA
1 GGGTTTA
*
51525168 TAGGTTTA
1 -GGGTTTA
51525176 GGGTTTA
1 GGGTTTA
51525183 --GTTTA
1 GGGTTTA
51525188 GGGTTTA
1 GGGTTTA
51525195 GGG-TTA
1 GGGTTTA
51525201 GGGTTTA
1 GGGTTTA
51525208 GGGTTTA
1 GGGTTTA
51525215 GGGTTTTA
1 GGG-TTTA
51525223 GGGTTTA
1 GGGTTTA
51525230 GGGTTT-
1 GGGTTTA
51525236 GGGTTTA
1 GGGTTTA
51525243 GGGTTTA
1 GGGTTTA
51525250 GGGTTTA
1 GGGTTTA
51525257 GGGTTTA
1 GGGTTTA
51525264 GGGTTTTA
1 GGG-TTTA
51525272 GGGTTTA
1 GGGTTTA
51525279 GGGTTTA
1 GGGTTTA
51525286 GGGTTTA
1 GGGTTTA
51525293 GGGTTTA
1 GGGTTTA
51525300 GGGTTTA
1 GGGTTTA
51525307 GGGTTTA
1 GGGTTTA
51525314 GGGTTTA
1 GGGTTTA
51525321 GGGTTTA
1 GGGTTTA
51525328 GGGTTTA
1 GGGTTTA
51525335 GGGTTTA
1 GGGTTTA
51525342 GGGTTTA
1 GGGTTTA
51525349 GGGTTTA
1 GGGTTTA
51525356 GGGTTTA
1 GGGTTTA
51525363 GGGTTTA
1 GGGTTTA
51525370 GGGTTTA
1 GGGTTTA
51525377 GGGTTTTTA
1 GGG--TTTA
51525386 GGGTTTA
1 GGGTTTA
51525393 GGGTTTAA
1 GGGTTT-A
51525401 GGG-TTA
1 GGGTTTA
51525407 --GTTTA
1 GGGTTTA
51525412 GGGTTATA
1 GGGTT-TA
51525420 GGGTGGTTTA
1 --G-GGTTTA
51525430 GGG-TTA
1 GGGTTTA
51525436 GGGTTTTA
1 GGG-TTTA
51525444 TGGGTTTA
1 -GGGTTTA
51525452 -GGTTTA
1 GGGTTTA
51525458 GGGTTTTA
1 GGG-TTTA
51525466 GGAGTTTA
1 GG-GTTTA
51525474 GGGTTT-
1 GGGTTTA
51525480 --GTTTA
1 GGGTTTA
51525485 GGGGTTTTA
1 -GGG-TTTA
51525494 GGGTTTA
1 GGGTTTA
51525501 GGGTTTA
1 GGGTTTA
51525508 GGGTTTA
1 GGGTTTA
51525515 GGGTTTTA
1 GGG-TTTA
51525523 GGG-TTA
1 GGGTTTA
51525529 GTAGGTTTA
1 G--GGTTTA
51525538 GGGTTTA
1 GGGTTTA
51525545 GGGTTTA
1 GGGTTTA
51525552 GGGTTTTA
1 GGG-TTTA
51525560 GGG-TT-
1 GGGTTTA
51525565 GGG-TTA
1 GGGTTTA
51525571 GGG-TTA
1 GGGTTTA
51525577 GGGTTTA
1 GGGTTTA
51525584 GGGTTTA
1 GGGTTTA
51525591 GGGTTTTA
1 GGG-TTTA
51525599 -GGTTTA
1 GGGTTTA
*
51525605 GGTTTTA
1 GGGTTTA
51525612 GGG-TTA
1 GGGTTTA
51525618 GGGTTTA
1 GGGTTTA
51525625 GGGTTTA
1 GGGTTTA
51525632 GGGTGGTTTAA
1 --G-GGTTT-A
51525643 GGGTTTA
1 GGGTTTA
51525650 GGGTTTA
1 GGGTTTA
51525657 GGGTTTA
1 GGGTTTA
51525664 GGGTTTA
1 GGGTTTA
51525671 -GG--TA
1 GGGTTTA
51525675 GGGTTTA
1 GGGTTTA
51525682 GGGTTTA
1 GGGTTTA
51525689 GGGTTTA
1 GGGTTTA
51525696 GGGTTTAA
1 GGGTTT-A
51525704 GGGTTTAAA
1 GGGTTT--A
51525713 GGGTTTTA
1 GGG-TTTA
51525721 GGG-TTA
1 GGGTTTA
51525727 GGGTTTA
1 GGGTTTA
51525734 GGGTTTA
1 GGGTTTA
51525741 GGGTTTA
1 GGGTTTA
51525748 GGGTTTTA
1 GGG-TTTA
51525756 GGGTTTA
1 GGGTTTA
51525763 GGGTTTAA
1 GGGTTT-A
51525771 GGGTTTA
1 GGGTTTA
51525778 GGGGAGTTTA
1 --GG-GTTTA
51525788 GGGTTTA
1 GGGTTTA
*
51525795 GGGTTAA
1 GGGTTTA
51525802 GGGTTTA
1 GGGTTTA
51525809 GGGTTTTA
1 GGG-TTTA
51525817 GGAGTTTA
1 GG-GTTTA
51525825 GGGTTTA
1 GGGTTTA
51525832 GAGGTTTAA
1 G-GGTTT-A
51525841 GGGTTATAA
1 GGGTT-T-A
51525850 GGGTTTTA
1 GGG-TTTA
51525858 GGGTTTTA
1 GGG-TTTA
51525866 GGGTTTA
1 GGGTTTA
51525873 GGGTTTA
1 GGGTTTA
51525880 GGGGTTTAA
1 -GGGTTT-A
51525889 GGGTTTTAA
1 GGG-TTT-A
51525898 GGGTTTA
1 GGGTTTA
51525905 GGGTATTTA
1 GGG--TTTA
51525914 GGGTTTAGAA
1 GGGTTT---A
51525924 GGGTATTA
1 GGGT-TTA
51525932 GGGTTTAA
1 GGGTTT-A
51525940 GGGTTTA
1 GGGTTTA
51525947 GGGTTTA
1 GGGTTTA
51525954 GGGTTTA
1 GGGTTTA
51525961 -GGTATTA
1 GGGT-TTA
***
51525968 -GGAAAA
1 GGGTTTA
*
51525974 GGATGTTA
1 GGGT-TTA
51525982 GGGTTTTTA
1 GGG--TTTA
51525991 GGG-TTA
1 GGGTTTA
51525997 GGGTTTA
1 GGGTTTA
51526004 GTGGTTTAA
1 G-GGTTT-A
51526013 GGGTTTAA
1 GGGTTT-A
51526021 GGGTTTA
1 GGGTTTA
51526028 GGGATTTA
1 GGG-TTTA
51526036 GGGGGGTTTA
1 ---GGGTTTA
51526046 GGGTTTGA
1 GGGTTT-A
51526054 GGGTTTA
1 GGGTTTA
51526061 GGGTTT-
1 GGGTTTA
51526067 -GG-TTA
1 GGGTTTA
51526072 GGGTTTA
1 GGGTTTA
51526079 GGGTTTTA
1 GGG-TTTA
51526087 -GGTTTA
1 GGGTTTA
51526093 GGGTTTA
1 GGGTTTA
51526100 GGGTTTA
1 GGGTTTA
51526107 GGG-TTA
1 GGGTTTA
51526113 GGGTTTA
1 GGGTTTA
51526120 GGGTTTA
1 GGGTTTA
51526127 -GG-TTA
1 GGGTTTA
51526132 GGGTGTTA
1 GGGT-TTA
51526140 GGCGTTT
1 GG-GTTT
51526147 GGTTTTAAAG
Statistics
Matches: 8254, Mismatches: 111, Indels: 909
0.89 0.01 0.10
Matches are distributed among these distances:
4 32 0.00
5 90 0.01
6 626 0.08
7 5955 0.72
8 1083 0.13
9 321 0.04
10 128 0.02
11 19 0.00
ACGTcount: A:0.14, C:0.02, G:0.42, T:0.42
Consensus pattern (7 bp):
GGGTTTA
Found at i:51526056 original size:26 final size:25
Alignment explanation
Indices: 51526013--51526136 Score: 120
Period size: 25 Copynumber: 5.0 Consensus size: 25
51526003 AGTGGTTTAA
51526013 GGGTTTAAGGGTTTAGGGATTTAGGG-
1 GGGTTT-AGGGTTTAGGG-TTTAGGGT
51526039 GGGTTTAGGGTTTGAGGGTTTAGGGTT
1 GGGTTTAGGGTTT-AGGGTTTAGGG-T
*
51526066 TGG-TTAGGGTTTAGGGTTT----T
1 GGGTTTAGGGTTTAGGGTTTAGGGT
*
51526086 AGGTTTAGGGTTTAGGGTTTAGGGTT
1 GGGTTTAGGGTTTAGGGTTTAGGG-T
51526112 AGGGTTTAGGGTTTA-GG-TTAGGGT
1 -GGGTTTAGGGTTTAGGGTTTAGGGT
51526136 G
1 G
51526137 TTAGGCGTTT
Statistics
Matches: 85, Mismatches: 3, Indels: 23
0.77 0.03 0.21
Matches are distributed among these distances:
20 3 0.04
21 16 0.19
23 1 0.01
24 1 0.01
25 27 0.32
26 22 0.26
27 15 0.18
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.40
Consensus pattern (25 bp):
GGGTTTAGGGTTTAGGGTTTAGGGT
Found at i:51526559 original size:8 final size:8
Alignment explanation
Indices: 51526472--51526569 Score: 55
Period size: 8 Copynumber: 12.5 Consensus size: 8
51526462 GAGAAAATGT
51526472 TTTAAGAGG
1 TTTAAG-GG
51526481 TTT-AGGG
1 TTTAAGGG
*
51526488 GTT-AGGG
1 TTTAAGGG
*
51526495 TTTTAGGG
1 TTTAAGGG
*
51526503 TTTTTA-GG
1 -TTTAAGGG
*
51526511 TTTTAGGG
1 TTTAAGGG
* *
51526519 GTTAGGTGG
1 TTTAAG-GG
*
51526528 TTTAATGG
1 TTTAAGGG
51526536 TTTAAAGGG
1 TTT-AAGGG
51526545 TTT--GGG
1 TTTAAGGG
51526551 TTTAAGGG
1 TTTAAGGG
51526559 -TTAAGGG
1 TTTAAGGG
51526566 TTTA
1 TTTA
51526570 GGTTAGGGTT
Statistics
Matches: 72, Mismatches: 9, Indels: 17
0.73 0.09 0.17
Matches are distributed among these distances:
6 6 0.08
7 22 0.31
8 24 0.33
9 20 0.28
ACGTcount: A:0.19, C:0.00, G:0.38, T:0.43
Consensus pattern (8 bp):
TTTAAGGG
Found at i:51526559 original size:14 final size:14
Alignment explanation
Indices: 51526534--51526725 Score: 58
Period size: 15 Copynumber: 12.9 Consensus size: 14
51526524 GTGGTTTAAT
*
51526534 GGTTTAAAGGGTTTG
1 GGTTT-AAGGGTTAG
51526549 GGTTTAAGGGTTAAG
1 GGTTTAAGGGTT-AG
51526564 GGTTT-A-GGTTAG
1 GGTTTAAGGGTTAG
*
51526576 GGTTTAGAGGTTTA-
1 GGTTTA-AGGGTTAG
* *
51526590 AG-TTAGGGTTGGTTAG
1 GGTTTA-AG--GGTTAG
*
51526606 GG-GT-AGGAGTTTAG
1 GGTTTAAGG-G-TTAG
*
51526620 GGTTATAGGGGTTAG
1 GGTT-TAAGGGTTAG
51526635 GGTTTAAGGGTTTA-
1 GGTTTAAGGG-TTAG
51526649 GGTTAGGTAAGGGGTTTAG
1 GGTT---TAA-GGG-TTAG
* *
51526668 GGTATTTAGGGTTTGG
1 GGT-TTAAGGG-TTAG
*
51526684 GAGTTT-AGGGCGTAG
1 G-GTTTAAGGG-TTAG
*
51526699 GGTTTAAAGGGTTTG
1 GGTTT-AAGGGTTAG
51526714 GGTTTAAGGGTT
1 GGTTTAAGGGTT
51526726 TTAAATGGGT
Statistics
Matches: 137, Mismatches: 18, Indels: 45
0.69 0.09 0.22
Matches are distributed among these distances:
12 8 0.06
13 10 0.07
14 37 0.27
15 44 0.32
16 18 0.13
17 9 0.07
18 7 0.05
19 3 0.02
20 1 0.01
ACGTcount: A:0.20, C:0.01, G:0.43, T:0.37
Consensus pattern (14 bp):
GGTTTAAGGGTTAG
Found at i:51526589 original size:8 final size:7
Alignment explanation
Indices: 51526479--51526753 Score: 106
Period size: 7 Copynumber: 37.0 Consensus size: 7
51526469 TGTTTTAAGA
51526479 GGTTTAG
1 GGTTTAG
*
51526486 GGGTTAG
1 GGTTTAG
51526493 GGTTTTAG
1 GG-TTTAG
51526501 GGTTTTTAG
1 GG--TTTAG
*
51526510 GTTTTAG
1 GGTTTAG
*
51526517 GGGTTAGG
1 GGTTTA-G
*
51526525 TGGTTTAAT
1 -GGTTT-AG
51526534 GGTTTAAAG
1 GGTTT--AG
51526543 GGTTT-G
1 GGTTTAG
51526549 GGTTTAAG
1 GGTTT-AG
*
51526557 GGTTAAG
1 GGTTTAG
51526564 GGTTTA-
1 GGTTTAG
51526570 GG-TTAG
1 GGTTTAG
51526576 GGTTTAG
1 GGTTTAG
51526583 AGGTTTA-
1 -GGTTTAG
*
51526590 AG-TTAG
1 GGTTTAG
51526596 GGTTGGTTAG
1 GG-T--TTAG
*
51526606 GG-GTAG
1 GGTTTAG
51526612 GAGTTTAG
1 G-GTTTAG
51526620 GGTTATAG
1 GGTT-TAG
*
51526628 GGGTTAG
1 GGTTTAG
51526635 GGTTTAAG
1 GGTTT-AG
51526643 GGTTTA-
1 GGTTTAG
51526649 GG-TTA-
1 GGTTTAG
*
51526654 GG-TAAGG
1 GGTTTA-G
51526661 GGTTTAG
1 GGTTTAG
51526668 GGTATTTAG
1 GG--TTTAG
*
51526677 GGTTTGG
1 GGTTTAG
51526684 GAGTTTAG
1 G-GTTTAG
**
51526692 GGCGTAG
1 GGTTTAG
51526699 GGTTTAAAG
1 GGTTT--AG
51526708 GGTTT-G
1 GGTTTAG
51526714 GGTTTAAG
1 GGTTT-AG
51526722 GGTTTTAAATG
1 GG-TTT--A-G
51526733 GGTTTTAG
1 GG-TTTAG
51526741 GGTTT-G
1 GGTTTAG
51526747 GGTTTAG
1 GGTTTAG
51526754 TAAGGTAGGT
Statistics
Matches: 210, Mismatches: 24, Indels: 68
0.70 0.08 0.23
Matches are distributed among these distances:
5 13 0.06
6 30 0.14
7 61 0.29
8 54 0.26
9 36 0.17
10 9 0.04
11 7 0.03
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.40
Consensus pattern (7 bp):
GGTTTAG
Found at i:51526618 original size:79 final size:82
Alignment explanation
Indices: 51526534--51526725 Score: 195
Period size: 79 Copynumber: 2.3 Consensus size: 82
51526524 GTGGTTTAAT
*
51526534 GGTTTAAAGGGTTTGGGTTTAAGGGTTAAGGGTTTAGGTTAGGGTTTAGAGGTTTA-AGTTAGGG
1 GGTTTAAAGGGTTTGGGTTTAAGGGTTAAGGGTTTAGGTTA-GG-TAAGAGGTTTAGAGTTAGGG
51526598 -TT-G-G-TTAGGG-GTAG
64 TTTGGAGTTTAGGGCGTAG
* * *
51526612 GAGTTT--AGGGTTATAGGGGTT-AGGGTTTAAGGGTTTAGGTTAGGTAAGGGGTTTAGGGTATT
1 G-GTTTAAAGGGTT-T-GGGTTTAAGGG-TTAAGGGTTTAGGTTAGGTAAGAGGTTTA--G-AGT
51526674 TAGGGTTTGGGAGTTTAGGGCGTAG
59 TAGGGTTT-GGAGTTTAGGGCGTAG
51526699 GGTTTAAAGGGTTTGGGTTTAAGGGTT
1 GGTTTAAAGGGTTTGGGTTTAAGGGTT
51526726 TTAAATGGGT
Statistics
Matches: 92, Mismatches: 5, Indels: 26
0.75 0.04 0.21
Matches are distributed among these distances:
77 15 0.16
78 8 0.09
79 25 0.27
81 7 0.08
82 2 0.02
84 1 0.01
85 1 0.01
86 17 0.18
87 10 0.11
88 6 0.07
ACGTcount: A:0.20, C:0.01, G:0.43, T:0.37
Consensus pattern (82 bp):
GGTTTAAAGGGTTTGGGTTTAAGGGTTAAGGGTTTAGGTTAGGTAAGAGGTTTAGAGTTAGGGTT
TGGAGTTTAGGGCGTAG
Found at i:51526631 original size:22 final size:22
Alignment explanation
Indices: 51526602--51526752 Score: 72
Period size: 22 Copynumber: 6.8 Consensus size: 22
51526592 TTAGGGTTGG
51526602 TTAGGGG-TAGGAGTTT-AGGGT
1 TTAGGGGTTAGG-GTTTAAGGGT
51526623 TATAGGGGTTAGGGTTTAAGGGT
1 T-TAGGGGTTAGGGTTTAAGGGT
51526646 TTA--GGTTA-GG--TAAGGGGT
1 TTAGGGGTTAGGGTTTAA-GGGT
* *
51526664 TTAGGGTATTTAGGGTTT-GGGAGT
1 TTAGGG--GTTAGGGTTTAAGG-GT
51526688 TTAGGGCG-TAGGGTTTAAAGGGT
1 TTAGGG-GTTAGGGTTT-AAGGGT
*
51526711 TT-GGGTTTAAGGGTTTTAAATGGGTT
1 TTAGGGGTT-AGGG-TTT-AA-GGG-T
*
51526737 TTA-GGGTTTGGGTTTA
1 TTAGGGGTTAGGGTTTA
51526753 GTAAGGTAGG
Statistics
Matches: 102, Mismatches: 8, Indels: 38
0.69 0.05 0.26
Matches are distributed among these distances:
17 3 0.03
18 7 0.07
19 2 0.02
20 6 0.06
21 1 0.01
22 27 0.26
23 23 0.23
24 19 0.19
25 7 0.07
26 7 0.07
ACGTcount: A:0.19, C:0.01, G:0.42, T:0.38
Consensus pattern (22 bp):
TTAGGGGTTAGGGTTTAAGGGT
Found at i:51526644 original size:15 final size:15
Alignment explanation
Indices: 51526616--51526723 Score: 62
Period size: 15 Copynumber: 6.9 Consensus size: 15
51526606 GGGTAGGAGT
51526616 TTAGGG-TTATAGGGG
1 TTAGGGTTTA-AGGGG
*
51526631 TTAGGGTTTAAGGGT
1 TTAGGGTTTAAGGGG
51526646 TTA-GGTTAGGTAAGGGG
1 TTAGGGTT---TAAGGGG
* *
51526663 TTTAGGGTATTTAGGGT
1 -TTAGGGT-TTAAGGGG
*
51526680 TTGGGAGTTT-AGGGCG
1 TTAGG-GTTTAAGGG-G
*
51526696 -TAGGGTTTAAAGGG
1 TTAGGGTTTAAGGGG
*
51526710 TTTGGGTTTAAGGG
1 TTAGGGTTTAAGGG
51526724 TTTTAAATGG
Statistics
Matches: 72, Mismatches: 10, Indels: 22
0.69 0.10 0.21
Matches are distributed among these distances:
14 9 0.12
15 34 0.47
16 9 0.12
17 13 0.18
18 3 0.04
19 3 0.04
20 1 0.01
ACGTcount: A:0.19, C:0.01, G:0.44, T:0.36
Consensus pattern (15 bp):
TTAGGGTTTAAGGGG
Found at i:51526654 original size:20 final size:19
Alignment explanation
Indices: 51526541--51526655 Score: 85
Period size: 20 Copynumber: 5.8 Consensus size: 19
51526531 AATGGTTTAA
* *
51526541 AGGGTTTGGGTTTAAGGGTTA
1 AGGGTTTAGG-TT-AGGGTTT
51526562 AGGGTTTAGGTTAGGGTTT
1 AGGGTTTAGGTTAGGGTTT
*
51526581 AGAGGTTTAAGTTAGGG-TT
1 AG-GGTTTAGGTTAGGGTTT
*
51526600 --GG-TTAGGGGTAGGAGTTT
1 AGGGTTTA-GGTTAGG-GTTT
51526618 AGGGTTATAGGGGTTAGGGTTT
1 AGGGTT-TA--GGTTAGGGTTT
51526640 AAGGGTTTAGGTTAGG
1 -AGGGTTTAGGTTAGG
51526656 TAAGGGGTTT
Statistics
Matches: 78, Mismatches: 6, Indels: 21
0.74 0.06 0.20
Matches are distributed among these distances:
15 3 0.04
16 7 0.09
17 1 0.01
18 2 0.03
19 10 0.13
20 24 0.31
21 10 0.13
22 8 0.10
23 13 0.17
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (19 bp):
AGGGTTTAGGTTAGGGTTT
Done.