Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 19 of 172
Found at i:4873089 original size:289 final size:286
Alignment explanation
Indices: 4872573--4873097 Score: 901
Period size: 289 Copynumber: 1.8 Consensus size: 286
4872563 CGGCTTTTTC
*
4872573 CATAAAAACGCTGCAAAAAAAATTCATTTTGAACAAAACTACACCGATTTGCTATTCTAAAAGGG
1 CATAAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGATTTGCTATTCTAAAAGGG
* *
4872638 GGCTATTTTTTAAAAGTGAAATTATTTTGTGGCGTTTTTTGTAAAAAAACGCCGCTATTTCTTAC
66 GGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTGTAAAAAAACGCCGCTATTGCTTAC
* *
4872703 CTTTAGAGTCGTTTTTCATAAAAACGCCGTAAAAAAATTCATTTTGAACAAAACTACGCCGTTTT
131 CTTTAGAGGCGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTT
4872768 GCTATGCTATGCTAAAACAAGGCTATTTTTTAAAAGTAAAATTATTTTGTGCCGTTTTTTATAAA
196 GCTATGCTATGCTAAAACAAGGCTATTTTTTAAAAGTAAAATTATTTTGTGCCGTTTTTTATAAA
4872833 AACGCCGCTATTACTTATCTTTAGCT
261 AACGCCGCTATTACTTATCTTTAGCT
*
4872859 CATAAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGTTTTGCTATGCTATGCTAA
1 CATAAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGATTTGCTA---T-T-CTAA
*
4872924 AAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCG-TTTTT-TATAAAAACGCCGCTATTG
61 AAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTGTAAAAAAACGCCGCTATTG
*
4872987 CTTACCTTTAGCGGCGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCC
126 CTTACCTTTAGAGGCGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCC
* *
4873052 GTTTTGCTATGCTATGCTAAAAGAGGGCTATTTTTTAAAAGTAAAA
191 GTTTTGCTATGCTATGCTAAAACAAGGCTATTTTTTAAAAGTAAAA
4873098 AAAACGCCGC
Statistics
Matches: 224, Mismatches: 10, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
286 52 0.23
289 124 0.55
290 6 0.03
291 42 0.19
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Consensus pattern (286 bp):
CATAAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGATTTGCTATTCTAAAAGGG
GGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTGTAAAAAAACGCCGCTATTGCTTAC
CTTTAGAGGCGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTT
GCTATGCTATGCTAAAACAAGGCTATTTTTTAAAAGTAAAATTATTTTGTGCCGTTTTTTATAAA
AACGCCGCTATTACTTATCTTTAGCT
Found at i:4873107 original size:86 final size:86
Alignment explanation
Indices: 4873011--4873183 Score: 346
Period size: 86 Copynumber: 2.0 Consensus size: 86
4873001 CGTTTTTCAT
4873011 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGA
1 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGA
4873076 GGGCTATTTTTTAAAAGTAAA
66 GGGCTATTTTTTAAAAGTAAA
4873097 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGA
1 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGA
4873162 GGGCTATTTTTTAAAAGTAAA
66 GGGCTATTTTTTAAAAGTAAA
4873183 A
1 A
4873184 TTATTTTGTG
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 87 1.00
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (86 bp):
AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGA
GGGCTATTTTTTAAAAGTAAA
Found at i:4873156 original size:234 final size:234
Alignment explanation
Indices: 4872862--4873330 Score: 859
Period size: 234 Copynumber: 2.0 Consensus size: 234
4872852 TTTAGCTCAT
4872862 AAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGTTTTGCTATGCTATGCTAAAAG
1 AAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGTTTTGCTATGCTATGCTAAAAG
*
4872927 GGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTAC
66 AGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTAC
* *
4872992 CTTTAGCGGCGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTT
131 CTTTAGCGACGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTAAACAAAACTACGCCGTTTT
4873057 GCTATGCTATGCTAAAAGAGGGCTATTTTTTAAAAGTAAA
196 GCTATGCTATGCTAAAAGAGGGCTA-TTTTTAAAAGTAAA
*
4873097 AAAAACGCCGC-AAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAG
1 AAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGTTTTGCTATGCTATGCTAAAAG
*
4873161 AGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTCTAAAAACGCCGCTATTGCTTAC
66 AGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTAC
*
4873226 CTTTAGCGACGTTTTTCATAAAAACGCCGCAAAAAATTTCATTTTAAACAAAACTACGCCGTTTT
131 CTTTAGCGACGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTAAACAAAACTACGCCGTTTT
*
4873291 GCTATGCTATGCTAAAAGGGGGCTATTTTTAAAAGTAAA
196 GCTATGCTATGCTAAAAGAGGGCTATTTTTAAAAGTAAA
4873330 A
1 A
4873331 TTATTTTGTG
Statistics
Matches: 227, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
233 15 0.07
234 201 0.89
235 11 0.05
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (234 bp):
AAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGTTTTGCTATGCTATGCTAAAAG
AGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTAC
CTTTAGCGACGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTAAACAAAACTACGCCGTTTT
GCTATGCTATGCTAAAAGAGGGCTATTTTTAAAAGTAAA
Found at i:4873376 original size:147 final size:148
Alignment explanation
Indices: 4873097--4873589 Score: 873
Period size: 147 Copynumber: 3.3 Consensus size: 148
4873087 TAAAAGTAAA
*
4873097 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGA
1 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGG
*
4873162 GGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTCTAAAAACGCCGCTATTGCTTACC
66 GGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTACC
4873227 TTTAGCGACGTTTTTCAT
131 TTTAGCGACGTTTTTCAT
* *
4873245 AAAAACGCCGCAAAAAATTTCATTTTAAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGG
1 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGG
4873310 GGGCTA-TTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTACC
66 GGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTACC
4873374 TTTAGCGACGTTTTTCAT
131 TTTAGCGACGTTTTTCAT
* * *
4873392 AAAAACGCCGAAAAAAAATTCATTTTGAACAAAACTACACCGTTTTGCTATGTTATGCTAAAAGG
1 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGG
*
4873457 GGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTACTTACC
66 GGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTACC
*
4873522 TTTAGCGGCGTTTTTCAT
131 TTTAGCGACGTTTTTCAT
* *
4873540 ATAAACGCCGCAAAAAAA-TCATTTTGAGCAAAACTACGCCGTTTTGCTAT
1 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTAT
4873590 TCTAAAAACT
Statistics
Matches: 329, Mismatches: 15, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
147 171 0.52
148 158 0.48
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.34
Consensus pattern (148 bp):
AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGG
GGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTGCTTACC
TTTAGCGACGTTTTTCAT
Found at i:4873437 original size:381 final size:375
Alignment explanation
Indices: 4872722--4873478 Score: 1293
Period size: 381 Copynumber: 2.0 Consensus size: 375
4872712 CGTTTTTCAT
*
4872722 AAAAACGCCGTAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAACA
1 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAACA
*
4872787 AGGCTATTTTTTAAAAGTAAAATTATTTTGTGCCGTTTTTTATAAAAACGCCGCTATTACTTATC
66 AGGCTATTTTTTAAAAGTAAAATTATTTTGTGCCGTTTTTTATAAAAACGCCGCTATTACTTACC
*
4872852 TTTAGCTCATAAAAACGCCGCAAAAAAAATTCATTTTGAACAAAACTACACCGTTTTGCTATGCT
131 TTTAGCTCATAAAAACGCCGCAAAAAAAATTCATTTTAAACAAAACTACACCGTTTTGCTATGCT
4872917 ATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGC
196 ATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGC
* *
4872982 TATTGCTTACCTTTAGCGGCGTTTTTCATAAAAACGCCGCAAAAAAATTCATTTTGAACAAAACT
261 TATTGCTTACCTTTAGCGACGTTTTTCATAAAAACGCCGAAAAAAAATTCATTTTGAACAAAACT
*
4873047 ACGCCGTTTTGCTATGCTATGCTAAAAGAGGGCTATTTTTTAAAAGTAAA
326 ACACCGTTTTGCTATGCTATGCTAAAAGAGGGCTATTTTTTAAAAGTAAA
*
4873097 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAAGA
1 AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAACA
* * * *
4873162 GGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTCTAAAAACGCCGCTATTGCTTACC
66 AGGCTATTTTTTAAAAGTAAAATTATTTTGTGCCGTTTTTTATAAAAACGCCGCTATTACTTACC
* *
4873227 TTTAGCGACGTTTTTCATAAAAACGCCGC-AAAAAATTTCATTTTAAACAAAACTACGCCGTTTT
131 TTTA--G-C-----TCATAAAAACGCCGCAAAAAAAATTCATTTTAAACAAAACTACACCGTTTT
4873291 GCTATGCTATGCTAAAAGGGGGCTA-TTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAA
188 GCTATGCTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAA
4873355 AACGCCGCTATTGCTTACCTTTAGCGACGTTTTTCATAAAAACGCCGAAAAAAAATTCATTTTGA
253 AACGCCGCTATTGCTTACCTTTAGCGACGTTTTTCATAAAAACGCCGAAAAAAAATTCATTTTGA
* *
4873420 ACAAAACTACACCGTTTTGCTATGTTATGCTAAAAGGGGGCTATTTTTTAAAAGTAAA
318 ACAAAACTACACCGTTTTGCTATGCTATGCTAAAAGAGGGCTATTTTTTAAAAGTAAA
4873478 A
1 A
4873479 TTATTTTGTG
Statistics
Matches: 359, Mismatches: 15, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
375 127 0.35
377 1 0.00
378 1 0.00
381 158 0.44
382 57 0.16
383 15 0.04
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34
Consensus pattern (375 bp):
AAAAACGCCGCAAAAAAATTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTAAAACA
AGGCTATTTTTTAAAAGTAAAATTATTTTGTGCCGTTTTTTATAAAAACGCCGCTATTACTTACC
TTTAGCTCATAAAAACGCCGCAAAAAAAATTCATTTTAAACAAAACTACACCGTTTTGCTATGCT
ATGCTAAAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGC
TATTGCTTACCTTTAGCGACGTTTTTCATAAAAACGCCGAAAAAAAATTCATTTTGAACAAAACT
ACACCGTTTTGCTATGCTATGCTAAAAGAGGGCTATTTTTTAAAAGTAAA
Found at i:4874082 original size:15 final size:15
Alignment explanation
Indices: 4874049--4874090 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
4874039 CCCGAACTCT
**
4874049 TAACCCCT-AACATC
1 TAACCCCTAAACCCC
4874063 TAACCCCTAAACCCC
1 TAACCCCTAAACCCC
*
4874078 TAACCCTTAAACC
1 TAACCCCTAAACC
4874091 TTAAATCCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.36, C:0.45, G:0.00, T:0.19
Consensus pattern (15 bp):
TAACCCCTAAACCCC
Found at i:4874134 original size:15 final size:14
Alignment explanation
Indices: 4874106--4874140 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
4874096 TCCCAACACT
4874106 TAAACCATAATCCC
1 TAAACCATAATCCC
*
4874120 TAAATCCATACTCCC
1 TAAA-CCATAATCCC
4874135 TAAACC
1 TAAACC
4874141 TGAAAATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCATAATCCC
Found at i:4874359 original size:15 final size:15
Alignment explanation
Indices: 4874339--4874393 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
4874329 CCTAGCACGT
4874339 CTAACCCCTAAACCC
1 CTAACCCCTAAACCC
4874354 CTAACCCTCT-AACCC
1 CTAACCC-CTAAACCC
* * *
4874369 CTAAACCTTAAATCC
1 CTAACCCCTAAACCC
4874384 C-AACCCCTAA
1 CTAACCCCTAA
4874394 TCCATAATCC
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 8 0.24
15 23 0.70
16 2 0.06
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (15 bp):
CTAACCCCTAAACCC
Found at i:4874375 original size:8 final size:7
Alignment explanation
Indices: 4874339--4874372 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
4874329 CCTAGCACGT
4874339 CTAACCC
1 CTAACCC
4874346 CTAAACCC
1 CT-AACCC
4874354 CTAACCC
1 CTAACCC
4874361 TCTAACCC
1 -CTAACCC
4874369 CTAA
1 CTAA
4874373 ACCTTAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAACCC
Found at i:4874407 original size:14 final size:14
Alignment explanation
Indices: 4874388--4874436 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
4874378 AAATCCCAAC
4874388 CCCTAATCCATAAT
1 CCCTAATCCATAAT
4874402 CCCTAATCCATAAT
1 CCCTAATCCATAAT
* * *
4874416 CTCTAAACCCATACT
1 CCCT-AATCCATAAT
4874431 CCCTAA
1 CCCTAA
4874437 ACCGACCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.35, C:0.39, G:0.00, T:0.27
Consensus pattern (14 bp):
CCCTAATCCATAAT
Found at i:4874846 original size:29 final size:29
Alignment explanation
Indices: 4874805--4874951 Score: 179
Period size: 29 Copynumber: 5.0 Consensus size: 29
4874795 AAAAAAATAA
4874805 AAAAATTACATTTTGACCCCTAAACTTTT
1 AAAAATTACATTTTGACCCCTAAACTTTT
*
4874834 AAAAATTACATTTTGACCCCTAAAATTTTT
1 AAAAATTACATTTTGACCCCT-AAACTTTT
* *
4874864 CAAAATTACATTTTGACCCCTAAAATTTTT
1 AAAAATTACATTTTGACCCCT-AAACTTTT
* *
4874894 CAAAAA-TACATTTTTACCCCAAAACTTTT
1 -AAAAATTACATTTTGACCCCTAAACTTTT
** * *
4874923 TGAAATTACATTTCGACCCCAAAACTTTT
1 AAAAATTACATTTTGACCCCTAAACTTTT
4874952 TCTGCATTTG
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
28 3 0.03
29 49 0.47
30 49 0.47
31 4 0.04
ACGTcount: A:0.38, C:0.21, G:0.03, T:0.37
Consensus pattern (29 bp):
AAAAATTACATTTTGACCCCTAAACTTTT
Found at i:4874952 original size:29 final size:30
Alignment explanation
Indices: 4874806--4874953 Score: 196
Period size: 30 Copynumber: 5.0 Consensus size: 30
4874796 AAAAAATAAA
* *
4874806 AAAATTACATTTTGACCCCTAAAC-TTTTA
1 AAAATTACATTTTGACCCCAAAACTTTTTC
4874835 AAAATTACATTTTGACCCCTAAAA-TTTTTC
1 AAAATTACATTTTGACCCC-AAAACTTTTTC
4874865 AAAATTACATTTTGACCCCTAAAA-TTTTTC
1 AAAATTACATTTTGACCCC-AAAACTTTTTC
* *
4874895 AAAAATACATTTTTACCCCAAAACTTTTT-
1 AAAATTACATTTTGACCCCAAAACTTTTTC
* *
4874924 GAAATTACATTTCGACCCCAAAACTTTTTC
1 AAAATTACATTTTGACCCCAAAACTTTTTC
4874954 TGCATTTGCA
Statistics
Matches: 107, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
29 48 0.45
30 59 0.55
ACGTcount: A:0.37, C:0.22, G:0.03, T:0.38
Consensus pattern (30 bp):
AAAATTACATTTTGACCCCAAAACTTTTTC
Found at i:4874952 original size:59 final size:61
Alignment explanation
Indices: 4874806--4874953 Score: 200
Period size: 59 Copynumber: 2.5 Consensus size: 61
4874796 AAAAAATAAA
*
4874806 AAAATTACATTTTGACCCCTAAAC-TTTT-AAAAATTACATTTTGACCCCTAAAATTTTTC
1 AAAATTACATTTTGACCCCAAAACTTTTTCAAAAATTACATTTTGACCCCTAAAATTTTTC
*
4874865 AAAATTACATTTTGACCCCTAAAA-TTTTTCAAAAA-TACATTTTTACCCC-AAAACTTTTT-
1 AAAATTACATTTTGACCCC-AAAACTTTTTCAAAAATTACATTTTGACCCCTAAAA-TTTTTC
* *
4874924 GAAATTACATTTCGACCCCAAAACTTTTTC
1 AAAATTACATTTTGACCCCAAAACTTTTTC
4874954 TGCATTTGCA
Statistics
Matches: 80, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
58 4 0.05
59 46 0.57
60 25 0.31
61 5 0.06
ACGTcount: A:0.37, C:0.22, G:0.03, T:0.38
Consensus pattern (61 bp):
AAAATTACATTTTGACCCCAAAACTTTTTCAAAAATTACATTTTGACCCCTAAAATTTTTC
Found at i:4875156 original size:17 final size:16
Alignment explanation
Indices: 4875141--4875187 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
4875131 TGCGAAAAAG
4875141 AAAAAA-AAAGAGAAA
1 AAAAAAGAAAGAGAAA
*
4875156 AAAAGAAGGAAGAGAAA
1 AAAA-AAGAAAGAGAAA
4875173 AAAGAAAGAAAGAGA
1 AAA-AAAGAAAGAGA
4875188 GGAGAAAGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 4 0.15
16 2 0.07
17 20 0.74
18 1 0.04
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAGAGAAA
Found at i:4875362 original size:12 final size:12
Alignment explanation
Indices: 4875345--4875375 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
4875335 CGGGTCGACC
4875345 CGACCCGACCCA
1 CGACCCGACCCA
*
4875357 CGACCCAACCCA
1 CGACCCGACCCA
4875369 CGACCCG
1 CGACCCG
4875376 TGACCCGACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.26, C:0.58, G:0.16, T:0.00
Consensus pattern (12 bp):
CGACCCGACCCA
Found at i:4875451 original size:28 final size:28
Alignment explanation
Indices: 4875402--4875460 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
4875392 AGCCCAGCCC
* *
4875402 AAAAAAAAACAGCAAAGCAAAAAAAAAG
1 AAAAAAAAACAGAAAAGAAAAAAAAAAG
*
4875430 AAAAAAAAACA-AAACAGAAAAAAAACAG
1 AAAAAAAAACAGAAA-AGAAAAAAAAAAG
4875458 AAA
1 AAA
4875461 CAGGCCCACT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.81, C:0.10, G:0.08, T:0.00
Consensus pattern (28 bp):
AAAAAAAAACAGAAAAGAAAAAAAAAAG
Found at i:4875461 original size:17 final size:16
Alignment explanation
Indices: 4875402--4875463 Score: 58
Period size: 16 Copynumber: 3.8 Consensus size: 16
4875392 AGCCCAGCCC
4875402 AAAAA-AAAACAGCAAA
1 AAAAACAAAACAG-AAA
*
4875418 GCAAAA-AAAA-AGAAAA
1 -AAAAACAAAACAG-AAA
4875434 AAAAACAAAACAGAAA
1 AAAAACAAAACAGAAA
4875450 AAAAACAGAAACAG
1 AAAAACA-AAACAG
4875464 GCCCACTTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
15 4 0.10
16 19 0.49
17 16 0.41
ACGTcount: A:0.79, C:0.11, G:0.10, T:0.00
Consensus pattern (16 bp):
AAAAACAAAACAGAAA
Found at i:4875600 original size:17 final size:17
Alignment explanation
Indices: 4875578--4875699 Score: 103
Period size: 18 Copynumber: 7.2 Consensus size: 17
4875568 GAAGCGGGCC
4875578 AAAGAAAAAAGAAGAAA
1 AAAGAAAAAAGAAGAAA
*
4875595 AAAGAAAAGAAAAAGAAGA
1 AAAGAAAA-AAGAAGAA-A
*
4875614 AAA-AAAGAAAGAAAGGAA
1 AAAGAAA-AAAG-AAGAAA
4875632 AAAG-AAAAAGAAGGAAA
1 AAAGAAAAAAGAA-GAAA
*
4875649 AAAGAAAAGAGAA-AAA
1 AAAGAAAAAAGAAGAAA
*
4875665 AAAG--GAAA-AAGAAA
1 AAAGAAAAAAGAAGAAA
*
4875679 AAAGAAAAGAAAAAGAAA
1 AAAGAAAA-AAGAAGAAA
4875697 AAA
1 AAA
4875700 AGGAAGTTCG
Statistics
Matches: 85, Mismatches: 8, Indels: 23
0.73 0.07 0.20
Matches are distributed among these distances:
13 2 0.02
14 9 0.11
16 10 0.12
17 21 0.25
18 34 0.40
19 9 0.11
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAAGAAGAAA
Found at i:4875607 original size:11 final size:11
Alignment explanation
Indices: 4875578--4875698 Score: 92
Period size: 11 Copynumber: 10.8 Consensus size: 11
4875568 GAAGCGGGCC
4875578 AAAGAAAAA-A
1 AAAGAAAAAGA
*
4875588 GAAGAAAAAAGA
1 AAAG-AAAAAGA
4875600 AAAGAAAAAGA
1 AAAGAAAAAGA
4875611 AGAA-AAAAAG-
1 A-AAGAAAAAGA
*
4875621 AAAG-AAAGGAA
1 AAAGAAAAAG-A
4875632 AAAGAAAAAG-
1 AAAGAAAAAGA
*
4875642 AAGGAAAAAAGA
1 AAAG-AAAAAGA
4875654 AAAGAGAAAA-A
1 AAAGA-AAAAGA
4875665 AAAGGAAAAAGA
1 AAA-GAAAAAGA
*
4875677 AAAAAGAAAAGAA
1 AAAGA-AAAAG-A
4875690 AAAGAAAAA
1 AAAGAAAAA
4875699 AAGGAAGTTC
Statistics
Matches: 89, Mismatches: 8, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
9 6 0.07
10 7 0.08
11 39 0.44
12 32 0.36
13 5 0.06
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (11 bp):
AAAGAAAAAGA
Found at i:4875662 original size:47 final size:46
Alignment explanation
Indices: 4875578--4875700 Score: 142
Period size: 47 Copynumber: 2.6 Consensus size: 46
4875568 GAAGCGGGCC
*
4875578 AAAGAAAAAAGAAGAAAAAAGAAAAGAAAAAGAAG-AAAAAAAGAAA
1 AAAGAAAAAAGAA-AAAAAAGAAAAAAAAAAGAAGAAAAAAAAGAAA
* * *
4875624 GAAAGGAAAAAGAAAAAGAAGGAAAAAAGAAAAG-AGAAAAAAAAGGAA
1 -AAAGAAAAAAGAAAAA-AAAGAAAAAA-AAAAGAAGAAAAAAAAGAAA
4875672 AAAGAAAAAAGAAAAGAAAAAGAAAAAAA
1 AAAGAAAAAAG-AAA-AAAAAGAAAAAAA
4875701 GGAAGTTCGA
Statistics
Matches: 65, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
46 3 0.05
47 33 0.51
48 27 0.42
49 2 0.03
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (46 bp):
AAAGAAAAAAGAAAAAAAAGAAAAAAAAAAGAAGAAAAAAAAGAAA
Found at i:4875673 original size:34 final size:33
Alignment explanation
Indices: 4875578--4875704 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 33
4875568 GAAGCGGGCC
*
4875578 AAAGAAAAAAGAAGAAAAAAG-AAAAG-AAAAAGA
1 AAAG-AAAAAGAA-AAAAAGGAAAAAGAAAAAAGA
*
4875611 AGAA-AAAAAGAAAGAAAGGAAAAAGAAAAAGAAGGAAA
1 A-AAGAAAAAGAAAAAAAGGAAAAAG-AAAA-AA-G--A
4875649 AAAGAAAAGAGAAAAAAAAGGAAAAAGAAAAAAGA
1 AAAGAAAA-AG-AAAAAAAGGAAAAAGAAAAAAGA
4875684 AAAGAAAAAGAAAAAAAGGAA
1 AAAGAAAAAGAAAAAAAGGAA
4875705 GTTCGAGTGT
Statistics
Matches: 80, Mismatches: 3, Indels: 22
0.76 0.03 0.21
Matches are distributed among these distances:
31 5 0.06
32 13 0.16
33 12 0.15
34 7 0.09
35 11 0.14
36 1 0.01
37 3 0.04
38 8 0.10
39 6 0.08
40 14 0.17
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (33 bp):
AAAGAAAAAGAAAAAAAGGAAAAAGAAAAAAGA
Found at i:4875894 original size:5 final size:5
Alignment explanation
Indices: 4875884--4875909 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
4875874 TTTTTATAAG
4875884 TTATT TTATT TTATT TTATT TTATT T
1 TTATT TTATT TTATT TTATT TTATT T
4875910 CTAAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:4876228 original size:17 final size:17
Alignment explanation
Indices: 4876197--4876406 Score: 122
Period size: 17 Copynumber: 11.8 Consensus size: 17
4876187 TTTAAAAAAA
* *
4876197 TCGTG-TTTCAAAATTG
1 TCGTGTTTTAAAAATTT
4876213 TCGTGTTTTAAAAATTT
1 TCGTGTTTTAAAAATTT
*
4876230 TCGCGTTTCT-AAAATTT
1 TCGTGTTT-TAAAAATTT
* *
4876247 TCGTGTTTCAAAAATCT
1 TCGTGTTTTAAAAATTT
* *
4876264 TCGCGTTTTCAAAAATTC
1 TCGTGTTTT-AAAAATTT
* *
4876282 T-GATGTTTCAAAAAAATTC
1 TCG-TGTTT--TAAAAATTT
*
4876301 CCGTGTTTTAAAAAAAAATTT
1 TCGTGTTTT----AAAAATTT
*
4876322 T-GTGTTTTCTAAAATTTT
1 TCGTG-TTT-TAAAAATTT
* * **
4876340 TCGTATTTCAAAAATCC
1 TCGTGTTTTAAAAATTT
*
4876357 TCGTGTTTTTAGAAATTT
1 TCGTG-TTTTAAAAATTT
*
4876375 TCGTGTTTTGAAAATTT
1 TCGTGTTTTAAAAATTT
4876392 TCGTGTTTTCAAAAA
1 TCGTGTTTT-AAAAA
4876407 AAAAAATCTC
Statistics
Matches: 147, Mismatches: 30, Indels: 32
0.70 0.14 0.15
Matches are distributed among these distances:
16 5 0.03
17 72 0.49
18 40 0.27
19 15 0.10
20 4 0.03
21 10 0.07
22 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (17 bp):
TCGTGTTTTAAAAATTT
Found at i:4876307 original size:19 final size:19
Alignment explanation
Indices: 4876248--4876316 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 19
4876238 CTAAAATTTT
** *
4876248 CGTGTTTCAAAAATCTTCG
1 CGTGTTTCAAAAAAATTCC
4876267 CGT-TTTC--AAAAATT-C
1 CGTGTTTCAAAAAAATTCC
*
4876282 TGATGTTTCAAAAAAATTCC
1 CG-TGTTTCAAAAAAATTCC
*
4876302 CGTGTTTTAAAAAAA
1 CGTGTTTCAAAAAAA
4876317 AATTTTGTGT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
15 1 0.03
16 6 0.15
17 4 0.10
18 4 0.10
19 22 0.56
20 2 0.05
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (19 bp):
CGTGTTTCAAAAAAATTCC
Found at i:4876389 original size:35 final size:36
Alignment explanation
Indices: 4876323--4876406 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 36
4876313 AAAAAATTTT
4876323 GTGTTTTCTAAAATTTTTCGTATTTCAAAAATCCTC
1 GTGTTTTCTAAAATTTTTCGTATTTCAAAAATCCTC
* ** **
4876359 GTGTTTT-TAGAAA-TTTTCGTGTTTTGAAAATTTTC
1 GTGTTTTCTA-AAATTTTTCGTATTTCAAAAATCCTC
*
4876394 GTGTTTTCAAAAA
1 GTGTTTTCTAAAA
4876407 AAAAAATCTC
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
35 29 0.73
36 11 0.28
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (36 bp):
GTGTTTTCTAAAATTTTTCGTATTTCAAAAATCCTC
Found at i:4886541 original size:28 final size:28
Alignment explanation
Indices: 4886509--4886564 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
4886499 AAGCGATTGC
4886509 ATTGGCTACGCACGAAAGTGCCACAAAT
1 ATTGGCTACGCACGAAAGTGCCACAAAT
4886537 ATTGGCTACGCACGAAAGTGCCACAAAT
1 ATTGGCTACGCACGAAAGTGCCACAAAT
4886565 GTCAAATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (28 bp):
ATTGGCTACGCACGAAAGTGCCACAAAT
Found at i:4887514 original size:8 final size:8
Alignment explanation
Indices: 4887501--4887559 Score: 70
Period size: 8 Copynumber: 7.6 Consensus size: 8
4887491 AAAAAAAGAG
4887501 ACAAAAAA
1 ACAAAAAA
4887509 AC--AAAA
1 ACAAAAAA
4887515 A-AAAAAA
1 ACAAAAAA
*
4887522 ACAAAAAG
1 ACAAAAAA
4887530 ACAAAAAA
1 ACAAAAAA
*
4887538 ATAAAAAA
1 ACAAAAAA
4887546 GACAAAAAA
1 -ACAAAAAA
4887555 ACAAA
1 ACAAA
4887560 GATGAAAACC
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
6 5 0.12
7 5 0.12
8 26 0.60
9 7 0.16
ACGTcount: A:0.85, C:0.10, G:0.03, T:0.02
Consensus pattern (8 bp):
ACAAAAAA
Found at i:4887515 original size:21 final size:21
Alignment explanation
Indices: 4887491--4887559 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 21
4887481 TATTATGCCT
* *
4887491 AAAAAAAGAGACAAAAAAACA
1 AAAAAAAAAAACAAAAAAACA
*
4887512 AAAAAAAAAAACAAAAAGACAAA
1 AAAAAAAAAAACAAAAA-A-ACA
4887535 AAAATAAAAAAGACAAAAAAACA
1 AAAA-AAAAAA-ACAAAAAAACA
4887558 AA
1 AA
4887560 GATGAAAACC
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
21 15 0.38
22 1 0.03
23 10 0.25
24 7 0.17
25 7 0.17
ACGTcount: A:0.84, C:0.09, G:0.06, T:0.01
Consensus pattern (21 bp):
AAAAAAAAAAACAAAAAAACA
Found at i:4887537 original size:17 final size:17
Alignment explanation
Indices: 4887515--4887559 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
4887505 AAAAACAAAA
4887515 AAAAAAAACAAAAAGAC
1 AAAAAAAACAAAAAGAC
4887532 AAAAAAATA-AAAAAGAC
1 AAAAAAA-ACAAAAAGAC
4887549 -AAAAAAACAAA
1 AAAAAAAACAAA
4887560 GATGAAAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 1 0.04
16 9 0.35
17 15 0.58
18 1 0.04
ACGTcount: A:0.84, C:0.09, G:0.04, T:0.02
Consensus pattern (17 bp):
AAAAAAAACAAAAAGAC
Found at i:4888692 original size:77 final size:78
Alignment explanation
Indices: 4888413--4888862 Score: 517
Period size: 77 Copynumber: 5.8 Consensus size: 78
4888403 TTTCAAGAAA
* ** *
4888413 TATTTCGTTTAAATTTCTGTTCTTT-TTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-
1 TATTTCTTTTAAATTTCTGTT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
4888476 GTCACATGCCGAGG
65 GACACATGCCGAGG
* * *
4888490 TACTTCTTTTATATTTCAGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
1 TATTTCTTTTAAATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
*
4888555 GATCAC--GCTGAGG
65 GA-CACATGCCGAGG
* * * *
4888568 -A---ATTTTCAATTTCTGTTATTT-TAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCG
1 TATTTCTTTTAAATTTCTGTT-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
4888628 GACACATGCCGAGG
65 GACACATGCCGAGG
* *
4888642 TATTTCTTTTAAATTT-TGTTCTTCAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGG
1 TATTTCTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
4888706 ACACATGCCGAGG
66 ACACATGCCGAGG
* * * * * *
4888719 TA-TCCGTTTAAATTTCTTTTTTTTTAAAAAAATTAACTCATAATGCGAGAGGTGAGTTGAGCCT
1 TATTTCTTTTAAATTTC--TGTTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
4888783 CGGGTCACATGCCGAGG
63 C-GGACACATGCCGAGG
* * *
4888800 TATTTCTTTGAAATTTCGTATTTTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCT
1 TATTTCTTTTAAATTTC-TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
4888863 AAGGCATGGC
Statistics
Matches: 317, Mismatches: 38, Indels: 33
0.82 0.10 0.09
Matches are distributed among these distances:
72 3 0.01
73 39 0.12
74 18 0.06
75 4 0.01
76 16 0.05
77 74 0.23
78 50 0.16
79 6 0.02
80 74 0.23
81 22 0.07
82 11 0.03
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (78 bp):
TATTTCTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
ACACATGCCGAGG
Found at i:4889142 original size:3 final size:3
Alignment explanation
Indices: 4889134--4889185 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
4889124 GCTAGGGCAT
4889134 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -AA -AA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
4889180 GAA GAA
1 GAA GAA
4889186 AAAAAAAAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 4 0.08
3 44 0.92
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:4889196 original size:22 final size:22
Alignment explanation
Indices: 4889153--4889198 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
4889143 GAAGAAGAAG
* * *
4889153 AAGAAGAAGAAGAAGAAGAAAA
1 AAGAAGAAGAAAAAAAAAAAAA
4889175 AAGAAGAAGAAAAAAAAAAAAA
1 AAGAAGAAGAAAAAAAAAAAAA
4889197 AA
1 AA
4889199 ATATTTTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (22 bp):
AAGAAGAAGAAAAAAAAAAAAA
Found at i:4889311 original size:24 final size:24
Alignment explanation
Indices: 4889282--4889334 Score: 72
Period size: 23 Copynumber: 2.1 Consensus size: 24
4889272 CCCAGCCCCC
4889282 AAAAAAACAGCAAAGCAAAAAAAA-AG
1 AAAAAAACA--AAA-CAAAAAAAACAG
4889308 AAAAAAACAAAACAAAAAAAACAG
1 AAAAAAACAAAACAAAAAAAACAG
4889332 AAA
1 AAA
4889335 CAGGCCCACT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 9 0.35
24 8 0.31
26 9 0.35
ACGTcount: A:0.81, C:0.11, G:0.08, T:0.00
Consensus pattern (24 bp):
AAAAAAACAAAACAAAAAAAACAG
Found at i:4889488 original size:17 final size:16
Alignment explanation
Indices: 4889452--4889570 Score: 124
Period size: 16 Copynumber: 7.6 Consensus size: 16
4889442 GAAGCGGGCA
*
4889452 AAGAAAAAAGAAGAA-
1 AAGAAAAAAGAAAAAG
4889467 AA-AAAAAAGAAAAAG
1 AAGAAAAAAGAAAAAG
*
4889482 AAGAAAAAA-AGAAAG
1 AAGAAAAAAGAAAAAG
*
4889497 AAAGGAAAAAGAAAAAG
1 -AAGAAAAAAGAAAAAG
4889514 AAGGAAAAAAG-AAAAG
1 AA-GAAAAAAGAAAAAG
*
4889530 -AGAAAAAAGAGGAAA-
1 AAGAAAAAAGA-AAAAG
*
4889545 AAGAAAAAAGAAAAAA
1 AAGAAAAAAGAAAAAG
4889561 AAGAAAAAAG
1 AAGAAAAAAG
4889571 GAAGGTTCGA
Statistics
Matches: 88, Mismatches: 7, Indels: 17
0.79 0.06 0.15
Matches are distributed among these distances:
14 19 0.22
15 13 0.15
16 44 0.50
17 12 0.14
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (16 bp):
AAGAAAAAAGAAAAAG
Found at i:4889621 original size:22 final size:22
Alignment explanation
Indices: 4889596--4889638 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
4889586 GTAGCCCTCT
4889596 CGGTCAAGCTCGTATTTTTGAA
1 CGGTCAAGCTCGTATTTTTGAA
* *
4889618 CGGTCGATCTCGTATTTTTGA
1 CGGTCAAGCTCGTATTTTTGA
4889639 GCTTTTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.40
Consensus pattern (22 bp):
CGGTCAAGCTCGTATTTTTGAA
Found at i:4889765 original size:5 final size:5
Alignment explanation
Indices: 4889755--4889781 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
4889745 TTTTTATAAG
4889755 TTTAT TTTAT TTTAT TTTAT TTTAT TT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TT
4889782 CTAAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:4890149 original size:18 final size:18
Alignment explanation
Indices: 4890071--4890278 Score: 132
Period size: 17 Copynumber: 11.8 Consensus size: 18
4890061 TTTAAAAAAA
*
4890071 TCGTG-TTTC-AAAATTG
1 TCGTGTTTTCAAAAATTT
4890087 TCGTGTTTT-AAAAATTT
1 TCGTGTTTTCAAAAATTT
* *
4890104 TCGCG-TTTCTAAAATTT
1 TCGTGTTTTCAAAAATTT
*
4890121 TCGTG-TTTCAAAAATCT
1 TCGTGTTTTCAAAAATTT
*
4890138 TCGTGTTTTCAAAAATTC
1 TCGTGTTTTCAAAAATTT
* *
4890156 T-GATG-TGTCAAAAAAATTC
1 TCG-TGTTTTC--AAAAATTT
* * *
4890175 CCGTGTTTTAAAAAAAAATT
1 TCGTGTTTT--CAAAAATTT
*
4890195 T-GTG-TTTCTAAAATTTT
1 TCGTGTTTTC-AAAAATTT
* **
4890212 TCGT-ATTTCAAAAATGC
1 TCGTGTTTTCAAAAATTT
*
4890229 TCGTGTTTTCAGAAATTT
1 TCGTGTTTTCAAAAATTT
* *
4890247 TTGTGTTTT-GAAAATTT
1 TCGTGTTTTCAAAAATTT
4890264 TCGTGTTTTCAAAAA
1 TCGTGTTTTCAAAAA
4890279 AAAATCTCTC
Statistics
Matches: 146, Mismatches: 30, Indels: 30
0.71 0.15 0.15
Matches are distributed among these distances:
16 8 0.05
17 73 0.50
18 43 0.29
19 13 0.09
20 9 0.06
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (18 bp):
TCGTGTTTTCAAAAATTT
Found at i:4891023 original size:114 final size:114
Alignment explanation
Indices: 4890711--4891077 Score: 506
Period size: 113 Copynumber: 3.2 Consensus size: 114
4890701 GGTCGCTACA
* * *
4890711 TTGGGCTTAGGTTATTTTGCGTCGCTTACTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCG
1 TTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCG
* * * *
4890776 CCTTCTTAAAAACGCCGCTAAAGCCCCGAAAGCTCATAAAACGGAGTAG
66 CTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTAG
* * * *
4890825 TTTGGCTTA-TTTTTTTTGCGGCGCTTTCTTAAAAACGCCGCTAAAGACC-AAGCATTAGCGGCG
1 TTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCG
*
4890888 CTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCG
66 CTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTAG
* * * *
4890937 TTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAATGCCGCAAAAGCCCTAAACATTAGTGGCG
1 TTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCG
* * * * *
4891002 CTTTCTTAAAAATGCCACTAAATCCCCAAAAGCTCAGAAAATGGCGTAG
66 CTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTAG
* *
4891051 TTTGGCTTAGG-TTTTTTGTGGCGCTTT
1 TTGGGCTTAGGTTTTTTTGCGGCGCTTT
4891078 TTGGAAAATG
Statistics
Matches: 223, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
112 66 0.30
113 84 0.38
114 73 0.33
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (114 bp):
TTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTAAGCATTAGCGGCG
CTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTAG
Found at i:4892848 original size:18 final size:20
Alignment explanation
Indices: 4892822--4892862 Score: 50
Period size: 18 Copynumber: 2.1 Consensus size: 20
4892812 CAATTTTTGT
*
4892822 AAAAGATTT-TCAAAA-TTC
1 AAAAGATTTATAAAAATTTC
*
4892840 AAAATATTTATAAAAATTTC
1 AAAAGATTTATAAAAATTTC
4892860 AAA
1 AAA
4892863 TTTTATATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
18 8 0.42
19 5 0.26
20 6 0.32
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (20 bp):
AAAAGATTTATAAAAATTTC
Found at i:4895726 original size:105 final size:105
Alignment explanation
Indices: 4895454--4895857 Score: 501
Period size: 105 Copynumber: 3.8 Consensus size: 105
4895444 AAGATATAAG
* * * *
4895454 AGGATATTTGGCTATTTGGTCCAACG-AGAAATCGAAACCCAACACATTAGGGCACGTTTTCTCG
1 AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
* *
4895518 AATTTCCAAACGCAAAACATTGTCTTATTTTGAAATTATTAAA
66 AATTTCCAAACGCAAAACATTGAC-T-CTTTGAAATT-TTAAA
* * *
4895561 AGGATATTTGGCTATTTGGTCGAACGAGAAAATCAAAACCCAGCACATTAGGGCATGTTTTCTCA
1 AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
* * *
4895626 AATCTCCAAACGCAAAAAATT-AC-CTTTGAAAATTTAAA
66 AATTTCCAAACGCAAAACATTGACTCTTTGAAATTTTAAA
* *
4895664 AGGATATTTAGCTATTTGGTCGAACGAAAAAAAATCGAAACCCAGCACATTAGGACACGTTTTCT
1 AGGATATTTGGCTATTTGGTCGAACG--AAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCT
* * *
4895729 CAGATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTAAT
64 CAAATTTCCAAACGCAAAACATTGAC-T-CTTTGAAATTTTAAA
* *
4895773 AGGATATTTTGCTATTTGGTCGAACGAAAAAAAAATCGAAACCCAGCACATTAGGGCACATTTTC
1 AGGATATTTGGCTATTTGGTCGAACG---AAAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
*
4895838 T-AGAATTTCCAAACACAAAA
63 TCA-AATTTCCAAACGCAAAA
4895858 TATTTTCTTA
Statistics
Matches: 260, Mismatches: 28, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
103 30 0.12
104 8 0.03
105 53 0.20
106 1 0.00
107 26 0.10
108 51 0.20
109 39 0.15
110 52 0.20
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (105 bp):
AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
AATTTCCAAACGCAAAACATTGACTCTTTGAAATTTTAAA
Found at i:4895857 original size:110 final size:108
Alignment explanation
Indices: 4895454--4895875 Score: 547
Period size: 110 Copynumber: 3.9 Consensus size: 108
4895444 AAGATATAAG
* * *
4895454 AGGATATTTGGCTATTTGGTCCAACG-AGAAATCGAAACCCAACACATTAGGGCACGTTTTCTC-
1 AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
*
4895517 GAATTTCCAAACGCAAAACATTGTCTTATTTTGAAATTATTAAA
66 GAATTTCCAAACGCAAAACATTGTCTTACTTTGAAATT-TTAAA
* * *
4895561 AGGATATTTGGCTATTTGGTCGAACGAGAAAATCAAAACCCAGCACATTAGGGCATGTTTTCTCA
1 AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
* * * *
4895626 -AATCTCCAAACGCAAAAAATT-AC---CTTTGAAAATTTAAA
66 GAATTTCCAAACGCAAAACATTGTCTTACTTTGAAATTTTAAA
* *
4895664 AGGATATTTAGCTATTTGGTCGAACGAAAAAAAATCGAAACCCAGCACATTAGGACACGTTTTCT
1 AGGATATTTGGCTATTTGGTCGAACG--AAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCT
* *
4895729 CAG-ATTTCCAAACGCAAAACATTGCCTTACTTTGAAATTTTAAT
64 CAGAATTTCCAAACGCAAAACATTGTCTTACTTTGAAATTTTAAA
* *
4895773 AGGATATTTTGCTATTTGGTCGAACGAAAAAAAAATCGAAACCCAGCACATTAGGGCACATTTTC
1 AGGATATTTGGCTATTTGGTCGAACG---AAAAAATCGAAACCCAGCACATTAGGGCACGTTTTC
* * *
4895838 T-AGAATTTCCAAACACAAAATATTTTCTTACTTTGAAA
63 TCAGAATTTCCAAACGCAAAACATTGTCTTACTTTGAAA
4895876 AATTTTCCTT
Statistics
Matches: 276, Mismatches: 28, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
103 30 0.11
104 8 0.03
105 53 0.19
106 1 0.00
107 26 0.09
108 51 0.18
109 40 0.14
110 67 0.24
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.29
Consensus pattern (108 bp):
AGGATATTTGGCTATTTGGTCGAACGAAAAAATCGAAACCCAGCACATTAGGGCACGTTTTCTCA
GAATTTCCAAACGCAAAACATTGTCTTACTTTGAAATTTTAAA
Found at i:4900297 original size:29 final size:29
Alignment explanation
Indices: 4900246--4900303 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
4900236 CTATATAGAT
* *
4900246 CGGATCAAATTAGACATTCTATTTTTAAA
1 CGGATCAAATTAGACATTATATTATTAAA
*
4900275 CGGATCAATTTAGTAC-TTATATTATTAAA
1 CGGATCAAATTAG-ACATTATATTATTAAA
4900304 AATAATTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 23 0.92
30 2 0.08
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (29 bp):
CGGATCAAATTAGACATTATATTATTAAA
Found at i:4902527 original size:20 final size:20
Alignment explanation
Indices: 4902486--4902529 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
4902476 TATATTTTTT
* *
4902486 AAAATTTATAAGAAATTCTA
1 AAAATATATAAGAAAGTCTA
4902506 AAAATATATAAAGAAAGT-TA
1 AAAATATAT-AAGAAAGTCTA
4902526 AAAA
1 AAAA
4902530 ATTAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (20 bp):
AAAATATATAAGAAAGTCTA
Found at i:4908533 original size:9 final size:9
Alignment explanation
Indices: 4908521--4908546 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
4908511 AAAAAATTTT
4908521 GGGTAATTC
1 GGGTAATTC
4908530 GGGTAATTC
1 GGGTAATTC
4908539 GGGTAATT
1 GGGTAATT
4908547 TTTAACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.08, G:0.35, T:0.35
Consensus pattern (9 bp):
GGGTAATTC
Found at i:4910301 original size:8 final size:9
Alignment explanation
Indices: 4910287--4910332 Score: 51
Period size: 8 Copynumber: 5.0 Consensus size: 9
4910277 TCTCTCTCAA
4910287 CAAAAAATT
1 CAAAAAATT
4910296 -AAAAAATTT
1 CAAAAAA-TT
4910305 CAAAAAAATT
1 C-AAAAAATT
4910315 C-AAAAATT
1 CAAAAAATT
4910323 CAAAATAATT
1 CAAAA-AATT
4910333 TTTAAATTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
8 14 0.44
9 5 0.16
10 7 0.22
11 6 0.19
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (9 bp):
CAAAAAATT
Found at i:4910308 original size:18 final size:19
Alignment explanation
Indices: 4910287--4910367 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
4910277 TCTCTCTCAA
4910287 CAAAA-AATTAAAAAATTT
1 CAAAATAATTAAAAAATTT
* *
4910305 CAAAAAAATTCAAAAA-TT
1 CAAAATAATTAAAAAATTT
***
4910323 CAAAATAATTTTTAAATTT
1 CAAAATAATTAAAAAATTT
* *
4910342 CAAAATATTTATAAAAATTC
1 CAAAATAATTA-AAAAATTT
4910362 CAAAAT
1 CAAAAT
4910368 TTATATTTTT
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
18 19 0.38
19 20 0.40
20 11 0.22
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (19 bp):
CAAAATAATTAAAAAATTT
Found at i:4910312 original size:11 final size:10
Alignment explanation
Indices: 4910288--4910332 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
4910278 CTCTCTCAAC
4910288 AAAAAATT-A
1 AAAAAATTCA
*
4910297 AAAAATTTCA
1 AAAAAATTCA
4910307 AAAAAATTC-
1 AAAAAATTCA
4910316 -AAAAATTCA
1 AAAAAATTCA
*
4910325 AAATAATT
1 AAAAAATT
4910333 TTTAAATTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
8 8 0.27
9 7 0.23
10 15 0.50
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAAATTCA
Found at i:4910403 original size:21 final size:20
Alignment explanation
Indices: 4910377--4910427 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
4910367 TTTATATTTT
4910377 TTAAAAAATTAT-AAGAAATTC
1 TTAAAAAATTATAAAGAAA--C
* *
4910398 TTAAAATA-TATAAAGAAAG
1 TTAAAAAATTATAAAGAAAC
4910417 TTAAAAAATTA
1 TTAAAAAATTA
4910428 AAAATTTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 7 0.28
20 5 0.20
21 13 0.52
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (20 bp):
TTAAAAAATTATAAAGAAAC
Found at i:4912925 original size:14 final size:14
Alignment explanation
Indices: 4912906--4912949 Score: 72
Period size: 14 Copynumber: 3.1 Consensus size: 14
4912896 TTGTTTTAGC
4912906 TTTTATTTATTATT
1 TTTTATTTATTATT
4912920 TTTTATTTATT-TT
1 TTTTATTTATTATT
4912933 ATTTTATTTATTATT
1 -TTTTATTTATTATT
4912948 TT
1 TT
4912950 CTGTTTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 2 0.07
14 24 0.86
15 2 0.07
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTATTTATTATT
Found at i:4913062 original size:30 final size:29
Alignment explanation
Indices: 4912995--4913127 Score: 142
Period size: 30 Copynumber: 4.4 Consensus size: 29
4912985 CTCAAAAAAA
* *
4912995 CATAAATTACATTTT-AGCCTCTAATCTTTT
1 CATAAATTACATTTTGA-CC-CCAAACTTTT
* *
4913025 CAAAAATTATATTTTGACCCCAAACTTTT
1 CATAAATTACATTTTGACCCCAAACTTTT
*
4913054 CTATAAATTACATTTTGACCCCAAAATTTT
1 C-ATAAATTACATTTTGACCCCAAACTTTT
* * *
4913084 CTTTAAATTACACTTTGACCCCTTAACTTTT
1 C-ATAAATTACATTTTGACCCC-AAACTTTT
4913115 CATAAATTACATT
1 CATAAATTACATT
4913128 GTAGCCCTAT
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
29 9 0.10
30 70 0.80
31 8 0.09
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (29 bp):
CATAAATTACATTTTGACCCCAAACTTTT
Found at i:4913670 original size:13 final size:13
Alignment explanation
Indices: 4913654--4913683 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
4913644 CAGCAGGCAA
4913654 CGGCTGCAGGTAG
1 CGGCTGCAGGTAG
4913667 CGGCTGCAGGTAG
1 CGGCTGCAGGTAG
4913680 CGGC
1 CGGC
4913684 GGCGCAGTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.27, G:0.47, T:0.13
Consensus pattern (13 bp):
CGGCTGCAGGTAG
Found at i:4913775 original size:13 final size:13
Alignment explanation
Indices: 4913742--4913778 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
4913732 GGAAAGAAAA
4913742 AGAA-AAAAA-AG
1 AGAAGAAAAAGAG
4913753 -GAAGAAAAAGAG
1 AGAAGAAAAAGAG
4913765 AGAAGAAAAAGAG
1 AGAAGAAAAAGAG
4913778 A
1 A
4913779 AAAAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.13
11 5 0.22
12 2 0.09
13 13 0.57
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAAGAG
Found at i:4914336 original size:17 final size:17
Alignment explanation
Indices: 4914311--4914354 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 17
4914301 AAAAATCGTT
4914311 TTTCAAAAATTT-TCATG
1 TTTC-AAAATTTCTCATG
*
4914328 TCTTCAAAATTTCTCGTG
1 T-TTCAAAATTTCTCATG
4914346 TTTCAAAAT
1 TTTCAAAAT
4914355 AATAATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.32, C:0.16, G:0.07, T:0.45
Consensus pattern (17 bp):
TTTCAAAATTTCTCATG
Found at i:4914470 original size:18 final size:17
Alignment explanation
Indices: 4914420--4914471 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
4914410 AAACATTTTT
4914420 TTTCGTGTTTTCAAAAA
1 TTTCGTGTTTTCAAAAA
* * *
4914437 TTCCCT-TGTTTGAAAAA
1 TTTCGTGT-TTTCAAAAA
4914454 TGTTCGTGTTTTCAAAAA
1 T-TTCGTGTTTTCAAAAA
4914472 AAATAATTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
16 1 0.04
17 13 0.50
18 11 0.42
19 1 0.04
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (17 bp):
TTTCGTGTTTTCAAAAA
Found at i:4914605 original size:17 final size:18
Alignment explanation
Indices: 4914575--4914675 Score: 93
Period size: 17 Copynumber: 5.6 Consensus size: 18
4914565 CATGTTCCCG
4914575 TGTTTTCAAAAAATTTTCA
1 TGTTTTC-AAAAATTTTCA
*
4914594 TG-TTTCAAAAATCTTCA
1 TGTTTTCAAAAATTTTCA
*
4914611 TGTTTTC-AAAA-TTCCA
1 TGTTTTCAAAAATTTTCA
* *
4914627 -GTGTTTCAAAAATTGTCG
1 TGT-TTTCAAAAATTTTCA
*
4914645 TGTTTTCAAAAAATTTTCCT
1 TGTTTTC-AAAAATTTT-CA
4914665 TGTTTTCAAAA
1 TGTTTTCAAAA
4914676 GTCTCGTATT
Statistics
Matches: 67, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
15 2 0.03
16 7 0.10
17 20 0.30
18 14 0.21
19 16 0.24
20 8 0.12
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.45
Consensus pattern (18 bp):
TGTTTTCAAAAATTTTCA
Found at i:4914611 original size:44 final size:45
Alignment explanation
Indices: 4914528--4914614 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 45
4914518 TTGATGTTAT
* * * *
4914528 CGTGTTTTCAAAAAAATTCCCGTGTTTGACAAATTTTCATGTTCC
1 CGTGTTTTCAAAAAAATTCCCATGTTTCAAAAATCTTCATGTTCC
**
4914573 CGTGTTTTC-AAAAAATTTTCATGTTTCAAAAATCTTCATGTT
1 CGTGTTTTCAAAAAAATTCCCATGTTTCAAAAATCTTCATGTT
4914615 TTCAAAATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
44 27 0.75
45 9 0.25
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (45 bp):
CGTGTTTTCAAAAAAATTCCCATGTTTCAAAAATCTTCATGTTCC
Found at i:4914730 original size:37 final size:38
Alignment explanation
Indices: 4914573--4914805 Score: 151
Period size: 37 Copynumber: 6.5 Consensus size: 38
4914563 TTCATGTTCC
* * * *
4914573 CGTGTTTTC-AAAAAATTTTCATGTTTCAAAAATCT-T
1 CGTGTTTTCAAAAAAAATTCCGTGTTTCAAAAATTTCT
* *
4914609 CATGTTTTC----AAAATTCCAGTGTTTCAAAAA-TTGT
1 CGTGTTTTCAAAAAAAATTCC-GTGTTTCAAAAATTTCT
** * *
4914643 CGTGTTTTCAAAAAATTTTCCTTGTTTTC-AAAA-GTCT
1 CGTGTTTTCAAAAAAAATTCCGTG-TTTCAAAAATTTCT
* *
4914680 CGT-ATTTCAAAAAAAAATTCCGTGTTTCATAAATTTCT
1 CGTGTTTTC-AAAAAAAATTCCGTGTTTCAAAAATTTCT
* * *
4914718 -GTGTTTT--TAAAAAATCCCGTCTTTCAAAAATTT-T
1 CGTGTTTTCAAAAAAAATTCCGTGTTTCAAAAATTTCT
*
4914752 CGTGTTTTC--AAAAAATTGACCGTGTTTCATAAATTT-T
1 CGTGTTTTCAAAAAAAATT--CCGTGTTTCAAAAATTTCT
4914789 CGTG-TTTCAAAAAAAAT
1 CGTGTTTTCAAAAAAAAT
4914806 CCTCGTATTT
Statistics
Matches: 155, Mismatches: 25, Indels: 32
0.73 0.12 0.15
Matches are distributed among these distances:
33 7 0.05
34 21 0.14
35 36 0.23
36 20 0.13
37 48 0.31
38 23 0.15
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.42
Consensus pattern (38 bp):
CGTGTTTTCAAAAAAAATTCCGTGTTTCAAAAATTTCT
Found at i:4914878 original size:17 final size:17
Alignment explanation
Indices: 4914853--4914931 Score: 52
Period size: 19 Copynumber: 4.4 Consensus size: 17
4914843 CAAAAATTTT
* *
4914853 TTTTTGTGTTTTAAAAA
1 TTTTCGTGTTTCAAAAA
4914870 TTTTCGTGTTTCAAAAAGAA
1 TTTTCGTGTTTC--AAA-AA
**
4914890 AATTCGTGTTTCCTAAAAA
1 TTTTCGTGTTT-C-AAAAA
* *
4914909 ATCTCGTGTTTC-AAAA
1 TTTTCGTGTTTCAAAAA
4914925 TTTTCGT
1 TTTTCGT
4914932 TTTTTTAAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
16 9 0.18
17 10 0.20
18 1 0.02
19 14 0.29
20 14 0.29
21 1 0.02
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (17 bp):
TTTTCGTGTTTCAAAAA
Found at i:4914897 original size:20 final size:19
Alignment explanation
Indices: 4914872--4914924 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
4914862 TTTAAAAATT
4914872 TTCGTGTTTCAAAAAGAAAA
1 TTCGTGTTTCAAAAA-AAAA
**
4914892 TTCGTGTTTC-CTAAAAAA
1 TTCGTGTTTCAAAAAAAAA
4914910 TCTCGTGTTTCAAAA
1 T-TCGTGTTTCAAAA
4914925 TTTTCGTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 5 0.19
19 11 0.41
20 11 0.41
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TTCGTGTTTCAAAAAAAAA
Found at i:4925839 original size:1 final size:1
Alignment explanation
Indices: 4925833--4925902 Score: 50
Period size: 1 Copynumber: 70.0 Consensus size: 1
4925823 ATTATGCCTG
* * * * * * ** * *
4925833 AAAAAAATAAAAACAAAAAAAACAAAAAAAAACAAAAACAAAAAACAAAAGCAAAAAAAGAAAAG
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4925898 AAAAA
1 AAAAA
4925903 TCAAGATGAA
Statistics
Matches: 50, Mismatches: 19, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.86, C:0.09, G:0.04, T:0.01
Consensus pattern (1 bp):
A
Found at i:4925850 original size:6 final size:6
Alignment explanation
Indices: 4925835--4925889 Score: 56
Period size: 6 Copynumber: 8.8 Consensus size: 6
4925825 TATGCCTGAA
* * * *
4925835 AAAAAT AAAAAC AAAAAA AACAAAA AAAAAC AAAAAC AAAAAAC AAAAGC
1 AAAAAC AAAAAC AAAAAC AA-AAAC AAAAAC AAAAAC -AAAAAC AAAAAC
4925885 AAAAA
1 AAAAA
4925890 AAGAAAAGAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
6 30 0.71
7 12 0.29
ACGTcount: A:0.85, C:0.11, G:0.02, T:0.02
Consensus pattern (6 bp):
AAAAAC
Found at i:4925852 original size:13 final size:13
Alignment explanation
Indices: 4925834--4925890 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
4925824 TTATGCCTGA
*
4925834 AAAAAATAAAAAC
1 AAAAAACAAAAAC
4925847 AAAAAA-AACAAA-
1 AAAAAACAA-AAAC
4925859 AAAAAACAAAAAC
1 AAAAAACAAAAAC
*
4925872 AAAAAACAAAAGC
1 AAAAAACAAAAAC
4925885 AAAAAA
1 AAAAAA
4925891 AGAAAAGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
12 11 0.28
13 29 0.73
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.02
Consensus pattern (13 bp):
AAAAAACAAAAAC
Found at i:4925854 original size:16 final size:15
Alignment explanation
Indices: 4925833--4925882 Score: 64
Period size: 15 Copynumber: 3.2 Consensus size: 15
4925823 ATTATGCCTG
* *
4925833 AAAAAAATAAAAACA
1 AAAAAAACAAAAAAA
4925848 AAAAAAACAAAAAAA
1 AAAAAAACAAAAAAA
4925863 AACAAAAACAAAAAACA
1 AA-AAAAACAAAAAA-A
4925880 AAA
1 AAA
4925883 GCAAAAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
15 15 0.48
16 13 0.42
17 3 0.10
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (15 bp):
AAAAAAACAAAAAAA
Found at i:4925889 original size:25 final size:24
Alignment explanation
Indices: 4925833--4925882 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 24
4925823 ATTATGCCTG
*
4925833 AAAAAAATAAAAACAAAAAAAACAA
1 AAAAAAACAAAAAC-AAAAAAACAA
4925858 AAAAAAACAAAAAC-AAAAAACAA
1 AAAAAAACAAAAACAAAAAAACAA
4925881 AA
1 AA
4925883 GCAAAAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 11 0.46
25 13 0.54
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (24 bp):
AAAAAAACAAAAACAAAAAAACAA
Found at i:4925901 original size:13 final size:12
Alignment explanation
Indices: 4925834--4925902 Score: 68
Period size: 13 Copynumber: 5.4 Consensus size: 12
4925824 TTATGCCTGA
4925834 AAAAAATAAAAAC
1 AAAAAA-AAAAAC
4925847 AAAAAAAACAAA-
1 AAAAAAAA-AAAC
4925859 AAAAAACAAAAAC
1 AAAAAA-AAAAAC
*
4925872 AAAAAACAAAAGC
1 AAAAAA-AAAAAC
*
4925885 AAAAAAAGAAAAG
1 AAAAAAA-AAAAC
4925898 AAAAA
1 AAAAA
4925903 TCAAGATGAA
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
12 12 0.24
13 37 0.76
ACGTcount: A:0.86, C:0.09, G:0.04, T:0.01
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:4926836 original size:61 final size:64
Alignment explanation
Indices: 4926770--4926903 Score: 160
Period size: 73 Copynumber: 2.0 Consensus size: 64
4926760 CAATCTCTGT
*
4926770 TTTTTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCTTCGGGTCATGCCGAGGTATTT
1 TTTTTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGG-----
4926835 TTTTAAA
61 --TT-AA
* *
4926842 TTTGTTTTTCAAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGT
1 TTT-TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGT
4926904 ATTTCTTTCA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
66 1 0.02
72 3 0.05
73 54 0.93
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (64 bp):
TTTTTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTTAA
Found at i:4927272 original size:75 final size:76
Alignment explanation
Indices: 4926773--4927613 Score: 1284
Period size: 76 Copynumber: 11.1 Consensus size: 76
4926763 TCTCTGTTTT
*
4926773 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCTTCGGGTCATGCCGAGGTATTT-TT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
4926837 TTAAA-TT-TG
66 TTAAATTTCTG
* *
4926846 TTTTTCAAAAATCAACTCATATTGCAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
* *
4926911 TCAAATTTCAG
66 TTAAATTTCTG
4926922 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
*
4926987 TTAAATTTCCG
66 TTAAATTTCTG
4926998 TTTTTCAAAAAAATCAACTCATAATACAGA-G-GAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
1 TTTTTC--AAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTC
4927061 TTTTAAATTTCCAT-
64 TTTTAAATTT-C-TG
4927075 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
4927140 TTAAATTTCTG
66 TTAAATTTCTG
4927151 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
*
4927216 TCAAATTT-TG
66 TTAAATTTCTG
4927226 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
*
4927291 TCAAATTT-TCG
66 TTAAATTTCT-G
4927302 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
1 TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
*
4927367 TTAAATTT-TT
66 TTAAATTTCTG
* * * * *
4927377 TTTTTCAAAAATCAACTAATAATACGAGAGGTGAGTTGAGCATCGGGTCACGCTGAGGTATTTTT
1 TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCT
4927442 TTTAAATTTCTG
65 TTTAAATTTCTG
* *
4927454 TTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAT-CCTGAGGTA--T
1 -TTTTTCAAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCC-GAGGTATTT
*
4927516 -TTTTCAATTTCTG
63 CTTTTAAATTTCTG
*
4927529 TTTTTCAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCAT-CCTGAGGTA--T
1 TTTTTC-AAAAATCAACTCATAATAC-AGAGGTGAGTTGAGCCTCGGGTCATGCC-GAGGTATTT
*
4927591 -TTTTCAATTTCTG
63 CTTTTAAATTTCTG
4927604 TTTTTCAAAA
1 TTTTTCAAAA
4927614 GAAAAAGGAA
Statistics
Matches: 725, Mismatches: 27, Indels: 31
0.93 0.03 0.04
Matches are distributed among these distances:
73 59 0.08
74 16 0.02
75 210 0.29
76 314 0.43
77 52 0.07
78 74 0.10
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (76 bp):
TTTTTCAAAAATCAACTCATAATACAGAGGTGAGTTGAGCCTCGGGTCATGCCGAGGTATTTCTT
TTAAATTTCTG
Found at i:4927678 original size:90 final size:90
Alignment explanation
Indices: 4927535--4927700 Score: 262
Period size: 90 Copynumber: 1.8 Consensus size: 90
4927525 TCTGTTTTTC
* *
4927535 AAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCATCCTGAGGTATTTTTCAATT
1 AAAAAATCAACTCATAATGCGAGAGGTAAGTTGAGCCTCGAGTCATCCTGAGGTATTTTTCAATT
*
4927600 TCTGTTTTTCAAAAGAAAAAGGAAA
66 TCTGGTTTTCAAAAGAAAAAGGAAA
* *
4927625 AAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGAGTCA-CTTCGAGGTATTTTTCAAT
1 AAAAAATCAACTCATAATGCGAGAGGTAAGTTGAGCCTCGAGTCATCCT-GAGGTATTTTTCAAT
*
4927689 TTTTGGTTTTCA
65 TTCTGGTTTTCA
4927701 CAAAAATCAA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
89 2 0.03
90 67 0.97
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (90 bp):
AAAAAATCAACTCATAATGCGAGAGGTAAGTTGAGCCTCGAGTCATCCTGAGGTATTTTTCAATT
TCTGGTTTTCAAAAGAAAAAGGAAA
Found at i:4927777 original size:78 final size:76
Alignment explanation
Indices: 4927626--4927778 Score: 175
Period size: 76 Copynumber: 2.0 Consensus size: 76
4927616 AAAAGGAAAA
* * *
4927626 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGAGTCACTTCGAGGTATTTTTCAATTT
1 AAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCTAGAGTCACTTCGAGGTATTCTTCAATTT
* *
4927691 TTGGTTTTCAC
66 CTAGTTTTCAC
* * *
4927702 AAAAATCAACTCATATTGCAAGATGTGAGTTGAGTCTTAG-GTCA-TATGCCGAGGTATTCTTCA
1 AAAAATCAACTCATATTGCAAGAGGTAAGTTGAG-CCTAGAGTCACT-T--CGAGGTATTCTTCA
*
4927765 ATTTCTATTTTTCA
62 ATTTCTAGTTTTCA
4927779 AAGCTCAACT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
75 1 0.02
76 36 0.56
77 3 0.05
78 24 0.38
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (76 bp):
AAAAATCAACTCATATTGCAAGAGGTAAGTTGAGCCTAGAGTCACTTCGAGGTATTCTTCAATTT
CTAGTTTTCAC
Found at i:4927854 original size:243 final size:241
Alignment explanation
Indices: 4927383--4927856 Score: 501
Period size: 243 Copynumber: 2.0 Consensus size: 241
4927373 TTTTTTTTTC
* *
4927383 AAAAATCAACTAATAATACGAGAGGTGAGTTGAGCATCGGGTCACGCTGAGGTATTTTTTTTAAA
1 AAAAATCAACTAATAATACGAGAGGTAAGTTGAGCATCGAGTCACGCTGAGGTA--TTTTTTAAA
** * *
4927448 TTTCTGTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCATCCTGAGG
64 TTTCTGTTTTCACAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCATCCTGAGG
* * * * *
4927513 TATTTTTCAATTTCTGTTTTTCAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGT
129 TATTCTTCAATTTCTATTTTTCAAAAAATCAACTCATAATGCGAGAAGTGAGTTGAACCTCGGAT
** * * *
4927578 CATCCTGAGGTATTTTTCAATTTCTGTTTTTCAAAAGAAAAAGGAAAA
194 CATCCCAAGCTATTTTTCAATTTCAGGTTTTCAAAAGAAAAAGGAAAA
* * * * * *
4927626 AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGAGTCAC-TTCGAGGTA-TTTTTCAAT
1 AAAAATCAACTAATAATACGAGAGGTAAGTTGAGCATCGAGTCACGCT-GAGGTATTTTTTAAAT
* * * *
4927689 TTTTGGTTTTCACAAAAATCAACTCATATTGCAAGATGTGAGTTGAGTCTTAGGTCATATGCC-G
65 TTCT-GTTTTCACAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTC--AT-CCTG
** * ** ** *
4927753 AGGTATTCTTCAATTTCTATTTTTC-AAAGCTCAACTCGTAATTTGAGAAGTGAGTTGAATTTTG
126 AGGTATTCTTCAATTTCTATTTTTCAAAAAATCAACTCATAATGCGAGAAGTGAGTTGAACCTCG
*
4927817 GATCGCA-CACCAAGCTA-TTTTCAGTTTCAGGTTTTCAAAA
191 GAT--CATC-CCAAGCTATTTTTCAATTTCAGGTTTTCAAAA
4927857 AATAAAAACA
Statistics
Matches: 188, Mismatches: 35, Indels: 16
0.79 0.15 0.07
Matches are distributed among these distances:
240 11 0.06
241 44 0.23
242 32 0.17
243 92 0.49
244 9 0.05
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.35
Consensus pattern (241 bp):
AAAAATCAACTAATAATACGAGAGGTAAGTTGAGCATCGAGTCACGCTGAGGTATTTTTTAAATT
TCTGTTTTCACAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCATCCTGAGGTA
TTCTTCAATTTCTATTTTTCAAAAAATCAACTCATAATGCGAGAAGTGAGTTGAACCTCGGATCA
TCCCAAGCTATTTTTCAATTTCAGGTTTTCAAAAGAAAAAGGAAAA
Found at i:4928172 original size:30 final size:30
Alignment explanation
Indices: 4928136--4928265 Score: 131
Period size: 30 Copynumber: 4.3 Consensus size: 30
4928126 AAAAAAACAT
* *
4928136 AAATTACATTTT-AGCCCCTGATCTTTTC-AA
1 AAATTACATTTTGA-CCCC-AAACTTTTCTAA
*
4928166 AAATTACATTTTGACCCCAAACTTTTCTAT
1 AAATTACATTTTGACCCCAAACTTTTCTAA
* **
4928196 AAATTACATTTTGACCCCAAAATTTTCTTT
1 AAATTACATTTTGACCCCAAACTTTTCTAA
* * *
4928226 AAATTACACTTTGACCCCTTAAC-TTTCTAG
1 AAATTACATTTTGACCCC-AAACTTTTCTAA
4928256 AAATTACATT
1 AAATTACATT
4928266 GTAGCCCCAT
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
29 7 0.08
30 76 0.88
31 3 0.03
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.40
Consensus pattern (30 bp):
AAATTACATTTTGACCCCAAACTTTTCTAA
Found at i:4928202 original size:60 final size:60
Alignment explanation
Indices: 4928134--4928287 Score: 154
Period size: 60 Copynumber: 2.6 Consensus size: 60
4928124 TCAAAAAAAC
* ** *
4928134 ATAAATTACATTTTAGCCCCTGATCTTTTC-AAAAATTACATTTTGACCCC-AAACTTTTCT
1 ATAAATTACATTTTAGCCCC-AAAATTTTCTAAAAATTACACTTTGACCCCTAAAC-TTTCT
** *
4928194 ATAAATTACATTTT-GACCCCAAAATTTTCTTTAAATTACACTTTGACCCCTTAACTTTCT
1 ATAAATTACATTTTAG-CCCCAAAATTTTCTAAAAATTACACTTTGACCCCTAAACTTTCT
* * *
4928254 AGAAATTACATTGTAGCCCC-ATATTTTCCTAAAA
1 ATAAATTACATTTTAGCCCCAAAATTTT-CTAAAA
4928288 TTGCATTTTT
Statistics
Matches: 77, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
59 13 0.17
60 60 0.78
61 4 0.05
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.39
Consensus pattern (60 bp):
ATAAATTACATTTTAGCCCCAAAATTTTCTAAAAATTACACTTTGACCCCTAAACTTTCT
Found at i:4928881 original size:18 final size:20
Alignment explanation
Indices: 4928853--4928894 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
4928843 GAACAAGGTG
4928853 AAAAGGAAAGAAAAAGA-AA
1 AAAAGGAAAGAAAAAGAGAA
4928872 AAAAGG-AAGAAAAAGAGAA
1 AAAAGGAAAGAAAAAGAGAA
4928891 AAAA
1 AAAA
4928895 ATAAAAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (20 bp):
AAAAGGAAAGAAAAAGAGAA
Found at i:4928894 original size:10 final size:9
Alignment explanation
Indices: 4928853--4928895 Score: 50
Period size: 10 Copynumber: 4.4 Consensus size: 9
4928843 GAACAAGGTG
4928853 AAAAGGAAA
1 AAAAGGAAA
*
4928862 GAAAAAGAAA
1 -AAAAGGAAA
4928872 AAAAGGAAGA
1 AAAAGGAA-A
4928882 AAAAGAGAAA
1 AAAAG-GAAA
4928892 AAAA
1 AAAA
4928896 TAAAAAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 7 0.24
10 19 0.66
11 3 0.10
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (9 bp):
AAAAGGAAA
Found at i:4929232 original size:14 final size:14
Alignment explanation
Indices: 4929213--4929242 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4929203 CCCAATCTGC
4929213 AGAAAAAAAAGAAA
1 AGAAAAAAAAGAAA
*
4929227 AGAAAAAAGAGAAA
1 AGAAAAAAAAGAAA
4929241 AG
1 AG
4929243 GCCCTTTTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (14 bp):
AGAAAAAAAAGAAA
Found at i:4929720 original size:17 final size:17
Alignment explanation
Indices: 4929693--4929738 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
4929683 AAAAAAATCG
4929693 TGTTTCAAAAATTT-TCA
1 TGTTTC-AAAATTTCTCA
*
4929710 TGTCTTCAAAATTTCTCG
1 TGT-TTCAAAATTTCTCA
4929728 TGTTTCAAAAT
1 TGTTTCAAAAT
4929739 AATAATAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 18 0.69
18 8 0.31
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.46
Consensus pattern (17 bp):
TGTTTCAAAATTTCTCA
Found at i:4929884 original size:24 final size:24
Alignment explanation
Indices: 4929829--4929884 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
4929819 CCCTTGTTTG
*
4929829 AAAAATGT-TCGTGTTTTCAAAAA
1 AAAAATTTCTCGTGTTTTCAAAAA
*
4929852 AATAATTTCTCGTG-TTTCAAAAA
1 AAAAATTTCTCGTGTTTTCAAAAA
4929875 AAAAACTTTC
1 AAAAA-TTTC
4929885 GCGAATATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 19 0.68
24 9 0.32
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (24 bp):
AAAAATTTCTCGTGTTTTCAAAAA
Found at i:4929994 original size:44 final size:45
Alignment explanation
Indices: 4929907--4929994 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 45
4929897 TTGATGCTAT
* * * *
4929907 CGTGTTTTCAAAAAAATTCCCGTGTTTGACAAATTTTCATGTTTC
1 CGTGTTTTCAAAAAAATTCCCGTATTTCAAAAATCTTCATGTTTC
** *
4929952 CGTGTTTTC-AAAAAATTTTCGTATTTCAAAAATCTTCGTGTTT
1 CGTGTTTTCAAAAAAATTCCCGTATTTCAAAAATCTTCATGTTT
4929995 TCAAAATTCC
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
44 27 0.75
45 9 0.25
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.44
Consensus pattern (45 bp):
CGTGTTTTCAAAAAAATTCCCGTATTTCAAAAATCTTCATGTTTC
Found at i:4929996 original size:18 final size:18
Alignment explanation
Indices: 4929952--4930200 Score: 140
Period size: 17 Copynumber: 13.8 Consensus size: 18
4929942 TTCATGTTTC
4929952 CGTGTTTTCAAAAAATTTT
1 CGTGTTTTC-AAAAATTTT
* *
4929971 CGT-ATTTCAAAAATCTT
1 CGTGTTTTCAAAAATTTT
*
4929988 CGTGTTTTC-AAAA-TTC
1 CGTGTTTTCAAAAATTTT
*
4930004 CAGTG-TTTCAAAAATTGT
1 C-GTGTTTTCAAAAATTTT
4930022 CGTGTTTTCAAAAAATTTT
1 CGTGTTTTC-AAAAATTTT
* * *
4930041 CCTTGTTTTC-AAAAGTCT
1 -CGTGTTTTCAAAAATTTT
* * *
4930059 CAT-ATTTCGAAAATTTT
1 CGTGTTTTCAAAAATTTT
* *
4930076 CTTGTTTTCAAAAAAAGAATTT
1 CGTGTTTTC---AAAA-ATTTT
*
4930098 CGTG-TTTCATAAATTTT
1 CGTGTTTTCAAAAATTTT
* * **
4930115 TGTGTTTTCAAAAAATCC
1 CGTGTTTTCAAAAATTTT
*
4930133 CGT-CTTTCAAAAATTTT
1 CGTGTTTTCAAAAATTTT
**
4930150 CGTGTTTTCAAAAAAATTGAC
1 CGTGTTTTC--AAAAATT-TT
*
4930171 CGTG-TTTCATAAATTTT
1 CGTGTTTTCAAAAATTTT
4930188 CGTG-TTTCAAAAA
1 CGTGTTTTCAAAAA
4930201 AAATCCTCGT
Statistics
Matches: 173, Mismatches: 39, Indels: 38
0.69 0.16 0.15
Matches are distributed among these distances:
16 10 0.06
17 67 0.39
18 48 0.28
19 11 0.06
20 19 0.11
21 11 0.06
22 7 0.04
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (18 bp):
CGTGTTTTCAAAAATTTT
Found at i:4930126 original size:73 final size:71
Alignment explanation
Indices: 4930034--4930200 Score: 185
Period size: 74 Copynumber: 2.3 Consensus size: 71
4930024 TGTTTTCAAA
* * * * * *
4930034 AAATTTTCCTTGTTTTCAAAAGTCTCATATTTCGAAAATTTTCTTGTTTTCAAAAAAAGAATT-T
1 AAATTTT-CGTGTTTTCAAAAATCCCATATTTCAAAAATTTTCGTGTTTTC--AAAAA-AATTAC
4930098 CGTGTTTCAT
62 CGTGTTTCAT
* * *
4930108 AAATTTTTGTGTTTTCAAAAAATCCCGTCTTTCAAAAATTTTCGTGTTTTCAAAAAAATTGACCG
1 AAATTTTCGTGTTTTC-AAAAATCCCATATTTCAAAAATTTTCGTGTTTTCAAAAAAATT-ACCG
4930173 TGTTTCAT
64 TGTTTCAT
4930181 AAATTTTCGTG-TTTCAAAAA
1 AAATTTTCGTGTTTTCAAAAA
4930201 AAATCCTCGT
Statistics
Matches: 80, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
71 9 0.11
72 9 0.11
73 27 0.34
74 35 0.44
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (71 bp):
AAATTTTCGTGTTTTCAAAAATCCCATATTTCAAAAATTTTCGTGTTTTCAAAAAAATTACCGTG
TTTCAT
Found at i:4930202 original size:73 final size:73
Alignment explanation
Indices: 4930063--4930201 Score: 194
Period size: 74 Copynumber: 1.9 Consensus size: 73
4930053 AAGTCTCATA
* * * *
4930063 TTTCGAAAATTTTCTTGTTTTCAAAAAAAGAATTTCGTGTTTCATAAATTTTTGTGTTTTCAAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAAGAA-TCCGTGTTTCATAAATTTTCGTGTTTTCAAAA
4930128 AATCCCGTC
65 AATCCCGTC
4930137 TTTCAAAAATTTTCGTGTTTTCAAAAAAATTG-A-CCGTGTTTCATAAATTTTCGTG-TTTCAAA
1 TTTCAAAAATTTTCGTGTTTTCAAAAAAA--GAATCCGTGTTTCATAAATTTTCGTGTTTTCAAA
4930199 AAA
64 AAA
4930202 AATCCTCGTG
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
72 10 0.17
73 20 0.34
74 27 0.46
75 1 0.02
76 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (73 bp):
TTTCAAAAATTTTCGTGTTTTCAAAAAAAGAATCCGTGTTTCATAAATTTTCGTGTTTTCAAAAA
ATCCCGTC
Found at i:4930277 original size:17 final size:17
Alignment explanation
Indices: 4930252--4930285 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4930242 CAAAAATTTT
* *
4930252 TTTTTGTGTTTGAAAAA
1 TTTTCGTGTTTCAAAAA
4930269 TTTTCGTGTTTCAAAAA
1 TTTTCGTGTTTCAAAAA
4930286 GAAAATTCGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.15, T:0.50
Consensus pattern (17 bp):
TTTTCGTGTTTCAAAAA
Found at i:4930285 original size:18 final size:17
Alignment explanation
Indices: 4930257--4930322 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 17
4930247 ATTTTTTTTT
* *
4930257 GTGTTTGAAAAATTTTC
1 GTGTTTCAAAAAATTTC
*
4930274 GTGTTTCAAAAAGAAAATTC
1 GTGTTTC--AAA-AAATTTC
* *
4930294 GTGTTTCCTAAAAATCTC
1 GTGTTT-CAAAAAATTTC
4930312 GTGTTTCAAAA
1 GTGTTTCAAAA
4930323 TTTTCATTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
17 10 0.26
18 11 0.29
19 5 0.13
20 11 0.29
21 1 0.03
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (17 bp):
GTGTTTCAAAAAATTTC
Found at i:4930385 original size:18 final size:20
Alignment explanation
Indices: 4930364--4930400 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4930354 TCTAAAATGC
4930364 TTGT-ATTT-AAAAAAAAAT
1 TTGTGATTTCAAAAAAAAAT
*
4930382 TTGTGGTTTCAAAAAAAAA
1 TTGTGATTTCAAAAAAAAA
4930401 AATTGTTGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 4 0.25
19 3 0.19
20 9 0.56
ACGTcount: A:0.51, C:0.03, G:0.11, T:0.35
Consensus pattern (20 bp):
TTGTGATTTCAAAAAAAAAT
Found at i:4930409 original size:24 final size:21
Alignment explanation
Indices: 4930372--4930418 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
4930362 GCTTGTATTT
*
4930372 AAAAAAAAATTTGTGGTTTCAA
1 AAAAAAAAATTTGTGCTTT-AA
4930394 AAAAAAAAATTGTTGTGCTTTAA
1 AAAAAAAAA-T-TTGTGCTTTAA
4930417 AA
1 AA
4930419 TTCTCCTGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 9 0.41
23 5 0.23
24 8 0.36
ACGTcount: A:0.51, C:0.04, G:0.13, T:0.32
Consensus pattern (21 bp):
AAAAAAAAATTTGTGCTTTAA
Found at i:4934051 original size:14 final size:14
Alignment explanation
Indices: 4934032--4934071 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
4934022 TTGATTGCCA
4934032 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
4934046 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
4934060 GGAAAATGTTTT
1 GTAAAATGTTTT
4934072 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:4934078 original size:34 final size:35
Alignment explanation
Indices: 4934040--4934106 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
4934030 CAGTAAAATG
* *
4934040 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
*
4934074 TTTTCTGTAAAATGATTTACTGAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
4934107 CTGGTGTTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:4934080 original size:20 final size:20
Alignment explanation
Indices: 4934055--4934094 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
4934045 CGTAAAATGA
*
4934055 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
4934075 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
4934095 GAAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:4939184 original size:34 final size:34
Alignment explanation
Indices: 4939145--4939214 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
4939135 GTAGGAAAAA
4939145 AAAAATCTTTATGTGATGAAACTATGAAAAATTT
1 AAAAATCTTTATGTGATGAAACTATGAAAAATTT
4939179 AAAAATCTTTATGTGATGAAACTATGAAAAATTT
1 AAAAATCTTTATGTGATGAAACTATGAAAAATTT
4939213 AA
1 AA
4939215 TCTTTCATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (34 bp):
AAAAATCTTTATGTGATGAAACTATGAAAAATTT
Found at i:4943048 original size:21 final size:21
Alignment explanation
Indices: 4943016--4943056 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
4943006 GAACATTTGG
4943016 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
4943037 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
4943057 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:4944190 original size:52 final size:51
Alignment explanation
Indices: 4944112--4944213 Score: 195
Period size: 52 Copynumber: 2.0 Consensus size: 51
4944102 AACTAGGAGT
4944112 CTGCTGCATAGAAGCTGAGGAGGAGTGTTGAAGTCAACCCCCATGCAGCAGC
1 CTGCTGCATAGAAGCTGAGGAGGAGTGTTGAAGTCAA-CCCCATGCAGCAGC
4944164 CTGCTGCATAGAAGCTGAGGAGGAGTGTTGAAGTCAACCCCATGCAGCAG
1 CTGCTGCATAGAAGCTGAGGAGGAGTGTTGAAGTCAACCCCATGCAGCAG
4944214 TCAAGGTGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 13 0.26
52 37 0.74
ACGTcount: A:0.27, C:0.24, G:0.31, T:0.18
Consensus pattern (51 bp):
CTGCTGCATAGAAGCTGAGGAGGAGTGTTGAAGTCAACCCCATGCAGCAGC
Found at i:4946052 original size:5 final size:5
Alignment explanation
Indices: 4946044--4946096 Score: 61
Period size: 5 Copynumber: 10.6 Consensus size: 5
4946034 TATTTTATTT
* * ** *
4946044 CATTC CATTC CATTC CATTC CATAC CATTT CATTC CATAG CATTT CATTC
1 CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC
4946094 CAT
1 CAT
4946097 CAAGCATTCA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.25, C:0.34, G:0.02, T:0.40
Consensus pattern (5 bp):
CATTC
Found at i:4946064 original size:15 final size:15
Alignment explanation
Indices: 4946040--4946096 Score: 87
Period size: 15 Copynumber: 3.8 Consensus size: 15
4946030 ATTTTATTTT
*
4946040 ATTTCATTCCATTCC
1 ATTTCATTCCATACC
*
4946055 ATTCCATTCCATACC
1 ATTTCATTCCATACC
*
4946070 ATTTCATTCCATAGC
1 ATTTCATTCCATACC
4946085 ATTTCATTCCAT
1 ATTTCATTCCAT
4946097 CAAGCATTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.02, T:0.42
Consensus pattern (15 bp):
ATTTCATTCCATACC
Found at i:4949327 original size:28 final size:30
Alignment explanation
Indices: 4949294--4949357 Score: 80
Period size: 28 Copynumber: 2.2 Consensus size: 30
4949284 ATATTTACCA
* *
4949294 TATTATAAAATTTTCT-CTTTTTATTTTAT
1 TATTATAAAATTTTCTAATTTTAATTTTAT
*
4949323 T-TTAT-ACATTTTCTAATTTTAATTTTAT
1 TATTATAAAATTTTCTAATTTTAATTTTAT
4949351 TATTATA
1 TATTATA
4949358 TTTTTTAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 8 0.28
28 16 0.55
29 5 0.17
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (30 bp):
TATTATAAAATTTTCTAATTTTAATTTTAT
Found at i:4949360 original size:27 final size:26
Alignment explanation
Indices: 4949294--4949361 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 26
4949284 ATATTTACCA
* * * *
4949294 TATTATAAAATTTTCTCTTTTTATTT
1 TATTATTATATTTTCTATTTTAATTT
4949320 TATT-TTATACATTTTCTAATTTTAATTT
1 TATTATTAT--ATTTTCT-ATTTTAATTT
4949348 TATTATTATATTTT
1 TATTATTATATTTT
4949362 TTAGAATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
25 2 0.06
26 4 0.12
27 12 0.35
28 12 0.35
29 4 0.12
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (26 bp):
TATTATTATATTTTCTATTTTAATTT
Found at i:4949369 original size:29 final size:28
Alignment explanation
Indices: 4949311--4949369 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 28
4949301 AAATTTTCTC
* **
4949311 TTTTTATTTTATTTTATACATTTTCTAA
1 TTTTAATTTTATTTTATACATTTTAGAA
**
4949339 TTTTAATTTTATTATTATATTTTTTAGAA
1 TTTTAATTTTATT-TTATACATTTTAGAA
4949368 TT
1 TT
4949370 ATTTTATATA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 12 0.48
29 13 0.52
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (28 bp):
TTTTAATTTTATTTTATACATTTTAGAA
Found at i:4954568 original size:22 final size:22
Alignment explanation
Indices: 4954542--4954601 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
4954532 AATTTTTATT
4954542 TTTATTTTATTATTT-TCTCTAC
1 TTTATTTTATTATTTAT-TCTAC
* *
4954564 TTTA-TTTATTACTTTATTTTAT
1 TTTATTTTATTA-TTTATTCTAC
4954586 TTTATTTTACTTATTT
1 TTTATTTTA-TTATTT
4954602 GGATATTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
21 7 0.22
22 14 0.44
23 8 0.25
24 3 0.09
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTATTTTATTATTTATTCTAC
Found at i:4954584 original size:17 final size:18
Alignment explanation
Indices: 4954542--4954601 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 18
4954532 AATTTTTATT
*
4954542 TTTATTTTA-TTATTTTC
1 TTTATTTTATTTATTTAC
* *
4954559 TCTACTTTATTTA-TTAC
1 TTTATTTTATTTATTTAC
4954576 TTTATTTTATTTTATTTTAC
1 TTTATTTTA-TTTA-TTTAC
4954596 -TTATTT
1 TTTATTT
4954602 GGATATTAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 17 0.50
18 7 0.21
19 6 0.18
20 4 0.12
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTTATTTATTTAC
Found at i:4954696 original size:12 final size:12
Alignment explanation
Indices: 4954681--4954716 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
4954671 ACGCTTAGAG
4954681 CGCATTGAAACC
1 CGCATTGAAACC
4954693 CGCATTGAAACC
1 CGCATTGAAACC
4954705 CG-ACTTGAAACC
1 CGCA-TTGAAACC
4954717 TTTAGCCAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 1 0.04
12 22 0.96
ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17
Consensus pattern (12 bp):
CGCATTGAAACC
Found at i:4955283 original size:150 final size:150
Alignment explanation
Indices: 4955012--4955306 Score: 581
Period size: 150 Copynumber: 2.0 Consensus size: 150
4955002 TTTTACCAAG
4955012 AATTATTGATAAAAATCTGGGAAAATTACAGATTTTTCATAATTGATGCCATCTCCACTGTTTTA
1 AATTATTGATAAAAATCTGGGAAAATTACAGATTTTTCATAATTGATGCCATCTCCACTGTTTTA
4955077 TTCTTATGAGACTAAAAATAATTGTGATTCATAGAGTCAACTTTATCTTGCTTTTCGTAAAATTG
66 TTCTTATGAGACTAAAAATAATTGTGATTCATAGAGTCAACTTTATCTTGCTTTTCGTAAAATTG
4955142 ATCACGTTTAATACATAATT
131 ATCACGTTTAATACATAATT
*
4955162 AATTATTGGTAAAAATCTGGGAAAATTACAGATTTTTCATAATTGATGCCATCTCCACTGTTTTA
1 AATTATTGATAAAAATCTGGGAAAATTACAGATTTTTCATAATTGATGCCATCTCCACTGTTTTA
4955227 TTCTTATGAGACTAAAAATAATTGTGATTCATAGAGTCAACTTTATCTTGCTTTTCGTAAAATTG
66 TTCTTATGAGACTAAAAATAATTGTGATTCATAGAGTCAACTTTATCTTGCTTTTCGTAAAATTG
4955292 ATCACGTTTAATACA
131 ATCACGTTTAATACA
4955307 AAGTGGACAC
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 144 1.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (150 bp):
AATTATTGATAAAAATCTGGGAAAATTACAGATTTTTCATAATTGATGCCATCTCCACTGTTTTA
TTCTTATGAGACTAAAAATAATTGTGATTCATAGAGTCAACTTTATCTTGCTTTTCGTAAAATTG
ATCACGTTTAATACATAATT
Found at i:4956369 original size:15 final size:15
Alignment explanation
Indices: 4956344--4956378 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
4956334 GACTCTATTT
*
4956344 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
4956358 TAATTAATATTAAGA
1 TAATTAATATTAAGA
4956373 TAATTA
1 TAATTA
4956379 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:4956419 original size:10 final size:10
Alignment explanation
Indices: 4956406--4956448 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
4956396 TTAGGATTTT
4956406 TTTATTTATC
1 TTTATTTATC
4956416 TTTATTTATC
1 TTTATTTATC
* **
4956426 TTTAATTAAA
1 TTTATTTATC
*
4956436 TGTATTTATC
1 TTTATTTATC
4956446 TTT
1 TTT
4956449 TGGGAATTTA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.26, C:0.07, G:0.02, T:0.65
Consensus pattern (10 bp):
TTTATTTATC
Found at i:4957524 original size:19 final size:19
Alignment explanation
Indices: 4957502--4957548 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
4957492 ATGATAACAA
4957502 ATAAAAATCAATAAAATTT
1 ATAAAAATCAATAAAATTT
* * *
4957521 ATAAAAATTATTAAATTTT
1 ATAAAAATCAATAAAATTT
4957540 ATTAAAAAT
1 A-TAAAAAT
4957549 ATAAAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
ATAAAAATCAATAAAATTT
Found at i:4957527 original size:10 final size:10
Alignment explanation
Indices: 4957514--4957605 Score: 54
Period size: 9 Copynumber: 9.6 Consensus size: 10
4957504 AAAAATCAAT
4957514 AAAATTTATA
1 AAAATTTATA
*
4957524 AAAA-TTATT
1 AAAATTTATA
*
4957533 AAATTTTATTA
1 AAAATTTA-TA
* *
4957544 AAAATATAAA
1 AAAATTTATA
4957554 AAAATATT-T-
1 AAAAT-TTATA
*
4957563 AAATTTTAGTA
1 AAAATTTA-TA
*
4957574 AAAA-TTAGA
1 AAAATTTATA
4957583 AAAA-TTATA
1 AAAATTTATA
4957592 AAAA--TATA
1 AAAATTTATA
4957600 AAAATT
1 AAAATT
4957606 ATAGAATATA
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
8 10 0.16
9 24 0.39
10 17 0.27
11 11 0.18
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (10 bp):
AAAATTTATA
Found at i:4957557 original size:30 final size:29
Alignment explanation
Indices: 4957513--4957590 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 29
4957503 TAAAAATCAA
* * *
4957513 TAAAATTTATAAAAATTATTAAATTTTAT
1 TAAAAATTAAAAAAATTATTAAATTTTAG
4957542 TAAAAATATAAAAAAA-TATTTAAATTTTAG
1 TAAAAAT-TAAAAAAATTA-TTAAATTTTAG
*
4957572 TAAAAATTAGAAAAATTAT
1 TAAAAATTAAAAAAATTAT
4957591 AAAAATATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
29 16 0.38
30 26 0.62
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.40
Consensus pattern (29 bp):
TAAAAATTAAAAAAATTATTAAATTTTAG
Found at i:4957602 original size:17 final size:17
Alignment explanation
Indices: 4957572--4957627 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
4957562 TAAATTTTAG
*
4957572 TAAAAATTAGAAAAATTA
1 TAAAAA-TATAAAAATTA
4957590 TAAAAATATAAAAATTA
1 TAAAAATATAAAAATTA
* *
4957607 TAGAATATATAGAAATATA
1 TA-AAAATATAAAAAT-TA
4957626 TA
1 TA
4957628 TATAAATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 12 0.36
18 17 0.52
19 4 0.12
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.30
Consensus pattern (17 bp):
TAAAAATATAAAAATTA
Found at i:4957973 original size:16 final size:16
Alignment explanation
Indices: 4957946--4957987 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
4957936 TAATTTTCAG
4957946 AAAATAATCAA-TTAATA
1 AAAATAA-CAATTTAA-A
*
4957963 AAAATAACAATTTAAC
1 AAAATAACAATTTAAA
4957979 AAAATAACA
1 AAAATAACA
4957988 TACATTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 12 0.52
17 11 0.48
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATAACAATTTAAA
Found at i:4957983 original size:33 final size:36
Alignment explanation
Indices: 4957914--4957985 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
4957904 ACTGAGCATT
* * * *
4957914 TAATCAATTATTAAAATAGTAATAATTTTCAGAAAA
1 TAATCAATTAATAAAATAGTAACAATTTTAACAAAA
4957950 TAATCAATTAATAAAA-A-TAACAA-TTTAACAAAA
1 TAATCAATTAATAAAATAGTAACAATTTTAACAAAA
4957983 TAA
1 TAA
4957986 CATACATTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 11 0.34
34 5 0.16
35 1 0.03
36 15 0.47
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.32
Consensus pattern (36 bp):
TAATCAATTAATAAAATAGTAACAATTTTAACAAAA
Found at i:4961810 original size:18 final size:18
Alignment explanation
Indices: 4961789--4961823 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4961779 TTGAATCGTA
4961789 TTTTATAATTATTAATAT
1 TTTTATAATTATTAATAT
* *
4961807 TTTTATGATTTTTAATA
1 TTTTATAATTATTAATA
4961824 AATTATTCTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (18 bp):
TTTTATAATTATTAATAT
Found at i:4962175 original size:20 final size:20
Alignment explanation
Indices: 4962150--4962199 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
4962140 TGGCTTAAAA
4962150 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
4962170 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
4962187 GTGGTAGTGGATT
1 TTGGTAGTGGATT
4962200 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:4971392 original size:14 final size:14
Alignment explanation
Indices: 4971373--4971402 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4971363 TGGTTGTTTT
4971373 TAATCTAATTTAAC
1 TAATCTAATTTAAC
*
4971387 TAATCTAGTTTAAC
1 TAATCTAATTTAAC
4971401 TA
1 TA
4971403 CGAACGCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.03, T:0.43
Consensus pattern (14 bp):
TAATCTAATTTAAC
Found at i:4972837 original size:17 final size:17
Alignment explanation
Indices: 4972798--4972834 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
4972788 ACAAATATAT
4972798 ATAATAAAAAGAAAACA
1 ATAATAAAAAGAAAACA
*
4972815 ATAATAAAAATAAAA-A
1 ATAATAAAAAGAAAACA
4972831 ATAA
1 ATAA
4972835 ATATGTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.78, C:0.03, G:0.03, T:0.16
Consensus pattern (17 bp):
ATAATAAAAAGAAAACA
Found at i:4972873 original size:12 final size:12
Alignment explanation
Indices: 4972842--4972884 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
4972832 TAAATATGTA
4972842 AATAAAATGATAAT
1 AATAAAAT--TAAT
4972856 AA-AAAATTAAT
1 AATAAAATTAAT
*
4972867 AATAAAATAAAT
1 AATAAAATTAAT
4972879 AATAAA
1 AATAAA
4972885 TAATAAGGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 6 0.22
12 14 0.52
13 5 0.19
14 2 0.07
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (12 bp):
AATAAAATTAAT
Found at i:4972875 original size:19 final size:19
Alignment explanation
Indices: 4972853--4972890 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
4972843 ATAAAATGAT
*
4972853 AATAAAAAATTAATAATAA
1 AATAAAAAATAAATAATAA
*
4972872 AATAAATAATAAATAATAA
1 AATAAAAAATAAATAATAA
4972891 GGGAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
AATAAAAAATAAATAATAA
Found at i:4972887 original size:30 final size:31
Alignment explanation
Indices: 4972800--4972887 Score: 78
Period size: 30 Copynumber: 2.9 Consensus size: 31
4972790 AAATATATAT
* *
4972800 AATAAA-AAGAAAACAATAATAA-AAATAAAA
1 AATAAATATGAAAATAA-AATAATAAATAAAA
* *
4972830 AATAAATATGTAAATAAAATGAT-AATAAAA
1 AATAAATATGAAAATAAAATAATAAATAAAA
*
4972860 AATTAATAAT-AAAAT-AAATAATAAATAA
1 AATAAAT-ATGAAAATAAAATAATAAATAA
4972888 TAAGGGAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 6 0.13
30 32 0.68
31 9 0.19
ACGTcount: A:0.73, C:0.01, G:0.03, T:0.23
Consensus pattern (31 bp):
AATAAATATGAAAATAAAATAATAAATAAAA
Found at i:4982774 original size:19 final size:20
Alignment explanation
Indices: 4982734--4982777 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
4982724 GTTTCTTTTG
* *
4982734 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
4982753 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
4982772 GCATTA
1 GCATTA
4982778 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:4987024 original size:86 final size:86
Alignment explanation
Indices: 4986879--4987228 Score: 556
Period size: 86 Copynumber: 4.1 Consensus size: 86
4986869 AGTAAAAATT
* * * * * *
4986879 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
4986944 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
4986965 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
4987030 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
*
4987051 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
4987116 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * *
4987137 GAAGACAAACCTTGCCTCTCTCATTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
4987202 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
4987224 GAAGA
1 GAAGA
4987229 TGGCAGATTT
Statistics
Matches: 247, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
86 226 0.91
87 21 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:4987066 original size:42 final size:42
Alignment explanation
Indices: 4986933--4987153 Score: 107
Period size: 42 Copynumber: 5.2 Consensus size: 42
4986923 GTTATCAGAT
4986933 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
4986975 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
4987019 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
4987061 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
*
4987105 CTTGCCTTCCTGCACTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
4987147 CTTGCCT
1 CTTGCCT
4987154 CTCTCATTTG
Statistics
Matches: 122, Mismatches: 37, Indels: 40
0.61 0.19 0.20
Matches are distributed among these distances:
40 2 0.02
41 26 0.21
42 35 0.29
43 4 0.03
44 27 0.22
45 26 0.21
46 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:4987339 original size:46 final size:46
Alignment explanation
Indices: 4987284--4987463 Score: 129
Period size: 46 Copynumber: 4.0 Consensus size: 46
4987274 ATAACTCTAT
*
4987284 CTCCCTGTATCTGGCAATGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATCTGGCAATGGAATAGATTGAAGATTGCAGATCTTAC
* * * * * *
4987330 CTTCCTGTATTTGGC-A-GCGAAGCAGATCGAAGATGGCAGATTTTAC
1 CTCCCTGTATCTGGCAATG-GAA-TAGATTGAAGATTGCAGATCTTAC
* * * ** * * *
4987376 CTCCCTGTGA-CT-ACAGTGGAGTAGATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGT-ATCTGGCAATGGAATAGATTGAAGATTGCAGATCT-TAC
* *
4987420 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTT
1 CTCCCTGTATCTGGCAATGGAATAGATTGAAGATTGCAGATCTT
4987464 GTCTTCCCAT
Statistics
Matches: 97, Mismatches: 27, Indels: 20
0.67 0.19 0.14
Matches are distributed among these distances:
43 4 0.04
44 13 0.13
45 30 0.31
46 44 0.45
47 6 0.06
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (46 bp):
CTCCCTGTATCTGGCAATGGAATAGATTGAAGATTGCAGATCTTAC
Found at i:4987452 original size:136 final size:134
Alignment explanation
Indices: 4987176--4987470 Score: 502
Period size: 136 Copynumber: 2.2 Consensus size: 134
4987166 GCAGAGCTGG
*
4987176 TTGAAGATAT-CAGATCTTGCTTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
4987240 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAATGGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAATGGA
4987305 ATAGA
130 ATAGA
4987310 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
* * * *
4987375 CCTCCCTGTGACTACAGTGGAGTAGATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGG
66 CCTCCC--TGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAATGG
4987440 AATAGA
129 AATAGA
*
4987446 TTGAAGATTGCAGATCTTGTCTTCC
1 TTGAAGATTGCAGATCTTGCCTTCC
4987471 CATATTGGTG
Statistics
Matches: 152, Mismatches: 6, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
133 1 0.01
134 68 0.45
136 83 0.55
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAATGGAA
TAGA
Done.