Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 23 of 172
Found at i:5628942 original size:17 final size:18
Alignment explanation
Indices: 5628920--5628956 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
5628910 TACACAAATG
*
5628920 TATATATGTATATA-GAA
1 TATATATATATATAGGAA
5628937 TATATATATATATAGGAA
1 TATATATATATATAGGAA
5628955 TA
1 TA
5628957 AACAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.41
Consensus pattern (18 bp):
TATATATATATATAGGAA
Found at i:5629245 original size:25 final size:26
Alignment explanation
Indices: 5629217--5629273 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
5629207 AAATTATAAA
5629217 ATAAAAAATATAAGCGTATATATA-T
1 ATAAAAAATATAAGCGTATATATATT
* * * * *
5629242 ATAAATATTATATGTGTGTATATATT
1 ATAAAAAATATAAGCGTATATATATT
5629268 ATAAAA
1 ATAAAA
5629274 GTATGTGTAT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.51, C:0.02, G:0.09, T:0.39
Consensus pattern (26 bp):
ATAAAAAATATAAGCGTATATATATT
Found at i:5629742 original size:43 final size:42
Alignment explanation
Indices: 5629502--5629737 Score: 339
Period size: 42 Copynumber: 5.6 Consensus size: 42
5629492 CAAACAAAAA
* *
5629502 CGCCGCTAAAGACCATGTTCTTTAGCGGCGTTTTT-TCCTAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCTAC-AAG
* * *
5629544 CGCCTCTAAAGAACGTGTTCTTTAGCGGCGTTTTTTTACAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCTACAAG
5629586 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCTACAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCTACAAG
*
5629628 CGCTGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCTACAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCTACAAG
* * * *
5629670 CGCCGCTAAAGAACATGTTCTTTAGTGGCATTTTTTTTACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGC-GTTTTTCTACAAG
* *
5629713 TGCCGCGAAAGAACATGTTCTTTAG
1 CGCCGCTAAAGAACATGTTCTTTAG
5629738 TGGCACTTTT
Statistics
Matches: 177, Mismatches: 15, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
42 142 0.80
43 35 0.20
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCTACAAG
Found at i:5629837 original size:14 final size:14
Alignment explanation
Indices: 5629814--5629845 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
5629804 GCCCTCCTGT
5629814 AGCAAAAATTCAAA
1 AGCAAAAATTCAAA
*
5629828 AGCAACAATTCAAA
1 AGCAAAAATTCAAA
5629842 AGCA
1 AGCA
5629846 GCCAATAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.59, C:0.19, G:0.09, T:0.12
Consensus pattern (14 bp):
AGCAAAAATTCAAA
Found at i:5630097 original size:21 final size:21
Alignment explanation
Indices: 5630071--5630111 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
5630061 TTTTGCTCTG
*
5630071 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
5630092 CTCTGCTTCCCTCGCTGCAG
1 CTCTGCTTCCCTCGCTGCAG
5630112 TCGCTGCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.05, C:0.44, G:0.20, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:5630118 original size:21 final size:21
Alignment explanation
Indices: 5630073--5630119 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
5630063 TTGCTCTGCT
* *
5630073 CTGCTTCTCTCGCTGCAGCCT
1 CTGCTTCCCTCGCTGCAGCCG
*
5630094 CTGCTTCCCTCGCTGCAGTCG
1 CTGCTTCCCTCGCTGCAGCCG
5630115 CTGCT
1 CTGCT
5630120 CTCTGCTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.04, C:0.43, G:0.21, T:0.32
Consensus pattern (21 bp):
CTGCTTCCCTCGCTGCAGCCG
Found at i:5635663 original size:26 final size:25
Alignment explanation
Indices: 5635580--5636024 Score: 638
Period size: 26 Copynumber: 17.2 Consensus size: 25
5635570 CAATGGTAAG
5635580 TTATGTAAGTTATGTAAGTTAAATGTA
1 TTATGTAAG-T-TGTAAGTTAAATGTA
5635607 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
* *
5635632 TTATGTAAGTTGCAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
5635658 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
* *
5635683 TTGTGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
* *
5635709 TTGTGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
*
5635735 TTATGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
5635761 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
* *
5635786 TTGTGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
*
5635812 TTATGTAAGTTGTAAGTCAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
* *
5635837 TTGTGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
5635863 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
*
5635888 TTATGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
5635914 TTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTAAATGTA
*
5635939 TTATGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTA-AATGTA
5635965 TTATGTAAGTTATGTAAGTTAAATGTA
1 TTATGTAAG-T-TGTAAGTTAAATGTA
5635992 TTATGTAAGTTATGTAAGTTAAATGTA
1 TTATGTAAG-T-TGTAAGTTAAATGTA
5636019 TTATGT
1 TTATGT
5636025 GGGTTATGTG
Statistics
Matches: 388, Mismatches: 22, Indels: 16
0.91 0.05 0.04
Matches are distributed among these distances:
25 149 0.38
26 182 0.47
27 48 0.12
28 9 0.02
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (25 bp):
TTATGTAAGTTGTAAGTTAAATGTA
Found at i:5635663 original size:51 final size:51
Alignment explanation
Indices: 5635580--5636024 Score: 732
Period size: 51 Copynumber: 8.6 Consensus size: 51
5635570 CAATGGTAAG
*
5635580 TTATGTAAGTTATGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAG-T-TGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
*
5635632 TTATGTAAGTTGCAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
* * *
5635683 TTGTGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTATTATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTA
5635735 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
* *
5635786 TTGTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTCAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
*
5635837 TTGTGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
5635888 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
5635939 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTAAATGTA
1 TTATGTAAGTTGTAAGTTATTATGTATTATGTAAG-T-TGTAAGTTAAATGTA
*
5635992 TTATGTAAGTTATGTAAGTTA-AATGTATTATGT
1 TTATGTAAG-T-TGTAAGTTATTATGTATTATGT
5636025 GGGTTATGTG
Statistics
Matches: 373, Mismatches: 14, Indels: 10
0.94 0.04 0.03
Matches are distributed among these distances:
50 8 0.02
51 262 0.70
52 58 0.16
53 24 0.06
54 12 0.03
55 9 0.02
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (51 bp):
TTATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA
Found at i:5636266 original size:69 final size:70
Alignment explanation
Indices: 5636193--5636338 Score: 249
Period size: 69 Copynumber: 2.1 Consensus size: 70
5636183 ACATTACTAA
5636193 TATAATTATTAATAATATTTAATAAAATAACATTTTA-AATAGTCAATTTTAATATTCCACATAT
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATAATAGTCAATTTTAATATTCCACATAT
5636257 TTTTT
66 TTTTT
*
5636262 TATAATTATTAATAATATTTAATAAAATGACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTA---TAATAGTCAATTTTAATATTCCACA
5636327 TATTTTTT
63 TATTTTTT
5636335 TATA
1 TATA
5636339 TTTTATTTTA
Statistics
Matches: 72, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
69 36 0.50
73 36 0.50
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (70 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATAATAGTCAATTTTAATATTCCACATAT
TTTTT
Found at i:5636332 original size:35 final size:35
Alignment explanation
Indices: 5636224--5636332 Score: 82
Period size: 35 Copynumber: 3.0 Consensus size: 35
5636214 ATAAAATAAC
5636224 ATTTTAAATAGTCAATTTTAATATTCCACATATTTT
1 ATTTT-AATAGTCAATTTTAATATTCCACATATTTT
* * * *
5636260 -TTTATAATTATTAATAATATTTAATAAAAT-GAC--ATTTT
1 ATTT-TAA-TAGT--CAAT-TTTAAT--ATTCCACATATTTT
5636298 ATTTTAATAGTCAATTTTAATATTCCACATATTTT
1 ATTTTAATAGTCAATTTTAATATTCCACATATTTT
5636333 TTTATATTTT
Statistics
Matches: 54, Mismatches: 8, Indels: 23
0.64 0.09 0.27
Matches are distributed among these distances:
32 2 0.04
33 2 0.04
34 6 0.11
35 13 0.24
36 4 0.07
37 3 0.06
38 11 0.20
39 9 0.17
40 2 0.04
41 2 0.04
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.50
Consensus pattern (35 bp):
ATTTTAATAGTCAATTTTAATATTCCACATATTTT
Found at i:5636568 original size:13 final size:13
Alignment explanation
Indices: 5636550--5636631 Score: 58
Period size: 13 Copynumber: 6.2 Consensus size: 13
5636540 TAAATTTTAG
*
5636550 TAAGTAATGTATT
1 TAAGTAATATATT
*
5636563 TAAGTAACATATT
1 TAAGTAATATATT
*
5636576 TAAGTAATAAATT
1 TAAGTAATATATT
** *
5636589 TAAACAA-ATTTT
1 TAAGTAATATATT
*
5636601 AGTAAGTAATGTATT
1 --TAAGTAATATATT
* *
5636616 TTAGTAATAAATT
1 TAAGTAATATATT
5636629 TAA
1 TAA
5636632 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 6
0.69 0.22 0.08
Matches are distributed among these distances:
12 3 0.06
13 39 0.78
14 5 0.10
15 3 0.06
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:5636616 original size:40 final size:40
Alignment explanation
Indices: 5636563--5636662 Score: 173
Period size: 40 Copynumber: 2.5 Consensus size: 40
5636553 GTAATGTATT
** *
5636563 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
5636603 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
5636643 TAAGTAATGTATTTTAGTAA
1 TAAGTAATGTATTTTAGTAA
5636663 GTAATGTATT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (40 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
Found at i:5636643 original size:23 final size:23
Alignment explanation
Indices: 5636568--5636645 Score: 71
Period size: 23 Copynumber: 3.7 Consensus size: 23
5636558 GTATTTAAGT
* *
5636568 AACATATTTAAGTAATAAATTTA
1 AACAAATTTTAGTAATAAATTTA
*
5636591 AACAAATTTTAGTAAGT-AATGT-
1 AACAAATTTTAGTAA-TAAATTTA
5636613 -----ATTTTAGTAATAAATTTA
1 AACAAATTTTAGTAATAAATTTA
5636631 AACAAATTTTAGTAA
1 AACAAATTTTAGTAA
5636646 GTAATGTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 16
0.68 0.06 0.25
Matches are distributed among these distances:
16 1 0.02
17 14 0.33
23 27 0.63
24 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.40
Consensus pattern (23 bp):
AACAAATTTTAGTAATAAATTTA
Found at i:5636665 original size:57 final size:57
Alignment explanation
Indices: 5636596--5636776 Score: 344
Period size: 57 Copynumber: 3.2 Consensus size: 57
5636586 ATTTAAACAA
5636596 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
* *
5636653 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAATCAAATTTTAGTAAGTAATTT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
5636710 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
5636767 ATTTTAGTAA
1 ATTTTAGTAA
5636777 TAAATTTAAA
Statistics
Matches: 120, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 120 1.00
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (57 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGT
Found at i:5636685 original size:97 final size:101
Alignment explanation
Indices: 5636541--5636840 Score: 369
Period size: 97 Copynumber: 3.1 Consensus size: 101
5636531 ATATATACTT
** *
5636541 AAATTTTAGTAAGTAATGTA--TT--TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTA
1 AAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTA
*
5636602 GTAAGTAATGTATTTTAGTAA-TAA-A-TTTA-AAC
66 GTAAGTAATTTATTTTAGTAAGTAATATTTTAGAAC
*
5636634 AAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAATCAAATTTTA
1 AAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTA
*
5636699 GTAAGTAATTTATTTTAGTAAGTAATGTATTTTAGTAAT
66 GTAAGTAATTTATTTTAGTAAGTAA--TATTTTAG-AAC
*
5636738 AAA-TTTA--AA-CAA---ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTA
1 AAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTA
*
5636796 GTAAGTAATTTATTTTAGTAAGTAATGTATTTTAGTAAT
66 GTAAGTAATTTATTTTAGTAAGTAA--TATTTTAG-AAC
5636835 AAATTT
1 AAATTT
5636841 AACATTCAAT
Statistics
Matches: 187, Mismatches: 8, Indels: 19
0.87 0.04 0.09
Matches are distributed among these distances:
93 20 0.11
95 2 0.01
97 142 0.76
98 5 0.03
100 2 0.01
101 3 0.02
102 4 0.02
103 4 0.02
104 5 0.03
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.44
Consensus pattern (101 bp):
AAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTA
GTAAGTAATTTATTTTAGTAAGTAATATTTTAGAAC
Found at i:5636753 original size:23 final size:23
Alignment explanation
Indices: 5636727--5636807 Score: 79
Period size: 23 Copynumber: 3.8 Consensus size: 23
5636717 TAAGTAATGT
5636727 ATTTTAGTAA-TAAATTTAAACAA
1 ATTTTAGTAAGT-AATTTAAACAA
*
5636750 ATTTTAGTAAGTAATGT------
1 ATTTTAGTAAGTAATTTAAACAA
5636767 ATTTTAGTAA-TAAATTTAAACAA
1 ATTTTAGTAAGT-AATTTAAACAA
5636790 ATTTTAGTAAGTAATTTA
1 ATTTTAGTAAGTAATTTA
5636808 TTTTAGTAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
16 1 0.02
17 14 0.30
23 30 0.64
24 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.09, T:0.43
Consensus pattern (23 bp):
ATTTTAGTAAGTAATTTAAACAA
Found at i:5636754 original size:40 final size:40
Alignment explanation
Indices: 5636710--5636816 Score: 205
Period size: 40 Copynumber: 2.7 Consensus size: 40
5636700 TAAGTAATTT
5636710 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
5636750 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
5636790 ATTTTAGTAAGTAATTTATTTTAGTAA
1 ATTTTAGTAAGTAATGTATTTTAGTAA
5636817 GTAATGTATT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.43, C:0.02, G:0.10, T:0.45
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:5639111 original size:84 final size:84
Alignment explanation
Indices: 5638972--5639405 Score: 733
Period size: 84 Copynumber: 5.1 Consensus size: 84
5638962 CATTTCCGGT
*
5638972 GTTTTCCTAAAAAATGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGTCT
1 GTTTTCCT-AAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGTCT
*
5639037 GGAATTGCATTATTTGTGGT
65 GGAATTGCATTATTTGTGGC
*
5639057 GTTTTCCTAAAAATGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGTCTG
1 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGTCTG
5639122 GAATTGCATTATTTGTGGC
66 GAATTGCATTATTTGTGGC
5639141 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTGCGTGGTCT
1 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT-CGTGGTCT
*
5639206 GGAATAATTGCATTATTTATGGC
65 GG---AATTGCATTATTTGTGGC
5639229 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGTCTG
1 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGTCTG
5639294 GAATTGCATTATTTGTGGC
66 GAATTGCATTATTTGTGGC
*
5639313 GTTTTCCTAAAAACGCCACTAGATATTACAGCTGTGAACAGAAACGACACCGTTTTGCGTGGTCT
1 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT-CGTGGTCT
*
5639378 GGAATAATTGCATTATTTCTGGC
65 GG---AATTGCATTATTTGTGGC
5639401 GTTTT
1 GTTTT
5639406 AAGCACAAAT
Statistics
Matches: 335, Mismatches: 6, Indels: 13
0.95 0.02 0.04
Matches are distributed among these distances:
84 202 0.60
85 28 0.08
87 10 0.03
88 95 0.28
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (84 bp):
GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGTCTG
GAATTGCATTATTTGTGGC
Found at i:5639258 original size:172 final size:172
Alignment explanation
Indices: 5638972--5639405 Score: 777
Period size: 172 Copynumber: 2.5 Consensus size: 172
5638962 CATTTCCGGT
*
5638972 GTTTTCCTAAAAAATGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT-CGTGGTC
1 GTTTTCCT-AAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTGCGTGGTC
* * *
5639036 TGG---AATTGCATTATTTGTGGTGTTTTCCTAAAAATGCCACTAAATATTACAGCTGTGAACAG
65 TGGAATAATTGCATTATTTATGGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAG
5639098 AAACGACACCGTTTTCGTGGTCTGGAATTGCATTATTTGTGGC
130 AAACGACACCGTTTTCGTGGTCTGGAATTGCATTATTTGTGGC
5639141 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTGCGTGGTCT
1 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTGCGTGGTCT
5639206 GGAATAATTGCATTATTTATGGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGA
66 GGAATAATTGCATTATTTATGGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGA
5639271 AACGACACCGTTTTCGTGGTCTGGAATTGCATTATTTGTGGC
131 AACGACACCGTTTTCGTGGTCTGGAATTGCATTATTTGTGGC
*
5639313 GTTTTCCTAAAAACGCCACTAGATATTACAGCTGTGAACAGAAACGACACCGTTTTGCGTGGTCT
1 GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTGCGTGGTCT
*
5639378 GGAATAATTGCATTATTTCTGGCGTTTT
66 GGAATAATTGCATTATTTATGGCGTTTT
5639406 AAGCACAAAT
Statistics
Matches: 255, Mismatches: 6, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
168 47 0.18
169 18 0.07
172 190 0.75
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (172 bp):
GTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTGCGTGGTCT
GGAATAATTGCATTATTTATGGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGA
AACGACACCGTTTTCGTGGTCTGGAATTGCATTATTTGTGGC
Found at i:5642093 original size:114 final size:113
Alignment explanation
Indices: 5641915--5642172 Score: 417
Period size: 114 Copynumber: 2.3 Consensus size: 113
5641905 AACACCTAGA
* *
5641915 TTAGCGGTGCTTTACAAAAAACGCCATTAATTCCCCCCCCAAAGGACACAAAACGGCATCGTCTG
1 TTAGCGGTGCTTTACAAAAAACGCCACTAATTCCCCCCCCAAAGGACACAAAACGGCACCGTCTG
5641980 GGTGTATTATTTGCGGCATTTTTTATAAACGCTGCTAATGTTCACTCT
66 GGTGTATTATTTGCGGCATTTTTTATAAACGCTGCTAATGTTCACTCT
* * *
5642028 TTAGCGGCGCTTTACAAAAAATGCCACTAATTCCCCCCCCCAAAGGCCACAAAACGGCACCGTCT
1 TTAGCGGTGCTTTACAAAAAACGCCACTAATT-CCCCCCCCAAAGGACACAAAACGGCACCGTCT
*
5642093 GGGTGTATTATTTGCGGCGTTTTTTATAAACGCTGCTAATGTTCACTCT
65 GGGTGTATTATTTGCGGCATTTTTTATAAACGCTGCTAATGTTCACTCT
* ***
5642142 TTAGCGGTGCTTTTCCTTAAACGCCACTAAT
1 TTAGCGGTGCTTTACAAAAAACGCCACTAAT
5642173 GCTCACTCTT
Statistics
Matches: 132, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
113 29 0.22
114 103 0.78
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (113 bp):
TTAGCGGTGCTTTACAAAAAACGCCACTAATTCCCCCCCCAAAGGACACAAAACGGCACCGTCTG
GGTGTATTATTTGCGGCATTTTTTATAAACGCTGCTAATGTTCACTCT
Found at i:5642163 original size:40 final size:40
Alignment explanation
Indices: 5642119--5642226 Score: 180
Period size: 40 Copynumber: 2.7 Consensus size: 40
5642109 GCGTTTTTTA
* * *
5642119 TAAACGCTGCTAATGTTCACTCTTTAGCGGTGCTTTTCCT
1 TAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTTCCT
*
5642159 TAAACGCCACTAATGCTCACTCTTTAGCGGCGCTTTTCCT
1 TAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTTCCT
5642199 TAAACGCCGCTAATGCTCACTCTTTAGC
1 TAAACGCCGCTAATGCTCACTCTTTAGC
5642227 AACGTTTTTG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.20, C:0.30, G:0.16, T:0.34
Consensus pattern (40 bp):
TAAACGCCGCTAATGCTCACTCTTTAGCGGCGCTTTTCCT
Found at i:5642319 original size:12 final size:12
Alignment explanation
Indices: 5642304--5642352 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
5642294 TAAGCATGAT
*
5642304 AATAGTAATAAC
1 AATAATAATAAC
* *
5642316 AATATTAAAAAC
1 AATAATAATAAC
*
5642328 AATAATAATAAA
1 AATAATAATAAC
*
5642340 AATAATGATAAC
1 AATAATAATAAC
5642352 A
1 A
5642353 TTATTGAAAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.65, C:0.06, G:0.04, T:0.24
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:5645601 original size:16 final size:17
Alignment explanation
Indices: 5645568--5645601 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
5645558 TATTAAATAG
*
5645568 TAATTACAAAAGATTTA
1 TAATTACAAAAGAATTA
5645585 TAATTAC-AAAGAATTA
1 TAATTACAAAAGAATTA
5645601 T
1 T
5645602 GATTTCCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (17 bp):
TAATTACAAAAGAATTA
Found at i:5648527 original size:114 final size:112
Alignment explanation
Indices: 5648341--5648885 Score: 404
Period size: 114 Copynumber: 4.8 Consensus size: 112
5648331 AAATCTCAAG
* * *
5648341 ACCAACACGCAGCGTTCTGGTCTTGATGTATATTGGC-ATTAGTGGCGCTTACAAACAAACGCCG
1 ACCAAAACGCAGCGTT-TGGTCTTGATGTATATT-GCAATTAGTGGCGCTTATAAAAAAACGCC-
* *
5648405 GTAATGTATAGTATTAGCGGCGCTTAGCGGAAGCGCCGCAAAAGATGTTA
63 GTAAAGTATAGTATTAGCGGCGCTTAGCGGAAGCGCCGCAAAAGATCTTA
* * **
5648455 ACCAAAACGCAGAGTTTGGTCTTGATGTATATTGCAATTAGTGGAGCTTATAAAGAAAATACCGC
1 ACCAAAACGCAGCGTTTGGTCTTGATGTATATTGCAATTAGTGGCGCTTATAAA-AAAACGCCG-
* ** * * * ***
5648520 TAATGTATAGTATTAGCGGCGCCGAACGTTAAACGCCGCAAGTCATCTTA
64 TAAAGTATAGTATTAGCGGCGCTTAGCG-GAAGCGCCGCAAAAGATCTTA
* * * ** *
5648570 ATCAAAACGCAGCGTTTTGGTATTGATGTATACTATAATTAGTGGCG-TT-TAAGGAAAACGCCA
1 ACCAAAACGCAGCG-TTTGGTCTTGATGTATATTGCAATTAGTGGCGCTTATAA-AAAAACGCC-
* * * * * * * *
5648633 GTAAAGGATAGT-TATAGCAGTGTTTGGTGGTAAGCGCCTCAAAATATCTTA
63 GTAAAGTATAGTAT-TAGCGGCGCTTAGCGG-AAGCGCCGCAAAAGATCTTA
* * * * *
5648684 ACCAAAACGCAGAGTTTGGTCTTGAGGTGTATTAG-AATTAGTGGCGCTTGCT-GAAAAACGCCG
1 ACCAAAACGCAGCGTTTGGTCTTGATGTATATT-GCAATTAGTGGCGCTT-ATAAAAAAACGCCG
* * * *
5648747 ATAAAGTATAGTATTAGCGGCG-TTTGTGGAACGTGCCGC-AAAGTGTCTTA
64 -TAAAGTATAGTATTAGCGGCGCTTAGCGGAA-GCGCCGCAAAAG-ATCTTA
* * * * ** ***
5648797 ACCAAAACACAGCGTTTAGTTCTTGATGTATACTGGAATTAGTGGCGCACATGGGAAAACGCCGC
1 ACCAAAACGCAGCGTTT-GGTCTTGATGTATATTGCAATTAGTGGCGCTTATAAAAAAACGCCG-
* *
5648862 TGAAGCATAGTATTAGCGGCGCTT
64 TAAAGTATAGTATTAGCGGCGCTT
5648886 TTACCGAAAC
Statistics
Matches: 338, Mismatches: 72, Indels: 41
0.75 0.16 0.09
Matches are distributed among these distances:
112 7 0.02
113 95 0.28
114 175 0.52
115 33 0.10
116 28 0.08
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (112 bp):
ACCAAAACGCAGCGTTTGGTCTTGATGTATATTGCAATTAGTGGCGCTTATAAAAAAACGCCGTA
AAGTATAGTATTAGCGGCGCTTAGCGGAAGCGCCGCAAAAGATCTTA
Found at i:5649009 original size:18 final size:18
Alignment explanation
Indices: 5648988--5649023 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
5648978 TCATTTTATA
5648988 TGTTT-TTTATATTTAATT
1 TGTTTATTTATA-TTAATT
5649006 TGTTTATTTATATTAATT
1 TGTTTATTTATATTAATT
5649024 AAAATTCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (18 bp):
TGTTTATTTATATTAATT
Found at i:5649348 original size:14 final size:14
Alignment explanation
Indices: 5649329--5649355 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
5649319 GGATTCTGGT
5649329 TAATTTAAGGGTTG
1 TAATTTAAGGGTTG
5649343 TAATTTAAGGGTT
1 TAATTTAAGGGTT
5649356 ATAGATTAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (14 bp):
TAATTTAAGGGTTG
Found at i:5649980 original size:8 final size:7
Alignment explanation
Indices: 5649966--5650028 Score: 90
Period size: 7 Copynumber: 8.9 Consensus size: 7
5649956 GACTTTTACT
5649966 GTTTGGG
1 GTTTGGG
5649973 GTTTTGGG
1 G-TTTGGG
5649981 GTTTGGG
1 GTTTGGG
*
5649988 GTTTGAG
1 GTTTGGG
5649995 GTTTGGG
1 GTTTGGG
5650002 GTTTGGG
1 GTTTGGG
*
5650009 GGTTGGG
1 GTTTGGG
*
5650016 GGTTGGG
1 GTTTGGG
5650023 GTTTGG
1 GTTTGG
5650029 TTTTTGAGGT
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
7 44 0.86
8 7 0.14
ACGTcount: A:0.02, C:0.00, G:0.57, T:0.41
Consensus pattern (7 bp):
GTTTGGG
Found at i:5650001 original size:21 final size:21
Alignment explanation
Indices: 5649966--5650040 Score: 87
Period size: 21 Copynumber: 3.5 Consensus size: 21
5649956 GACTTTTACT
*
5649966 GTTTGGGGTTTTGGGGTTTGGG
1 GTTTGAGG-TTTGGGGTTTGGG
5649988 GTTTGAGGTTTGGGGTTTGGG
1 GTTTGAGGTTTGGGGTTTGGG
* * * *
5650009 GGTTGGGGGTTGGGGTTTGGT
1 GTTTGAGGTTTGGGGTTTGGG
*
5650030 TTTTGAGGTTT
1 GTTTGAGGTTT
5650041 AAGGTTTAGA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
21 37 0.84
22 7 0.16
ACGTcount: A:0.03, C:0.00, G:0.52, T:0.45
Consensus pattern (21 bp):
GTTTGAGGTTTGGGGTTTGGG
Found at i:5652299 original size:16 final size:16
Alignment explanation
Indices: 5652278--5652313 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
5652268 GTATTTATAA
*
5652278 TTATCGATTTTCAATT
1 TTATCGATTTACAATT
5652294 TTATCGATTTACAATT
1 TTATCGATTTACAATT
5652310 TTAT
1 TTAT
5652314 TTCAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.11, G:0.06, T:0.56
Consensus pattern (16 bp):
TTATCGATTTACAATT
Found at i:5652681 original size:17 final size:17
Alignment explanation
Indices: 5652659--5652693 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5652649 TACATGACTT
5652659 ACATATTACTTACTAAA
1 ACATATTACTTACTAAA
**
5652676 ACATATTTTTTACTAAA
1 ACATATTACTTACTAAA
5652693 A
1 A
5652694 TTTACTTTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (17 bp):
ACATATTACTTACTAAA
Found at i:5652711 original size:13 final size:13
Alignment explanation
Indices: 5652695--5652753 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
5652685 TTACTAAAAT
*
5652695 TTACTTTAATATA
1 TTACTTAAATATA
*
5652708 TTACTTGAATATA
1 TTACTTAAATATA
5652721 TTACTTAAATA-A
1 TTACTTAAATATA
*
5652733 TTTACTTAAATACA
1 -TTACTTAAATATA
5652747 TTACTTA
1 TTACTTA
5652754 CTAAAATTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
12 1 0.02
13 40 0.95
14 1 0.02
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (13 bp):
TTACTTAAATATA
Found at i:5653052 original size:13 final size:13
Alignment explanation
Indices: 5653033--5653094 Score: 83
Period size: 13 Copynumber: 4.8 Consensus size: 13
5653023 TTTTTACTAA
*
5653033 AATTTACTTGAAT
1 AATTTACTTAAAT
5653046 -ATATTACTTAAAT
1 AAT-TTACTTAAAT
5653059 AATTTACTTAAAT
1 AATTTACTTAAAT
5653072 AATTTACTTAAAT
1 AATTTACTTAAAT
5653085 ACA-TTACTTA
1 A-ATTTACTTA
5653095 CTAAAATTTG
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
12 2 0.04
13 40 0.89
14 3 0.07
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.45
Consensus pattern (13 bp):
AATTTACTTAAAT
Found at i:5653447 original size:9 final size:9
Alignment explanation
Indices: 5653435--5653565 Score: 87
Period size: 9 Copynumber: 15.0 Consensus size: 9
5653425 TAGTTACATA
*
5653435 ATAACTTAT
1 ATAACTTAC
5653444 ATAAACTTAC
1 AT-AACTTAC
*
5653454 ATAA-TACAC
1 ATAACT-TAC
*
5653463 ATTACTTAC
1 ATAACTTAC
* *
5653472 ATAGCATAC
1 ATAACTTAC
5653481 ATAACTTAC
1 ATAACTTAC
5653490 ATAA--TAC
1 ATAACTTAC
* *
5653497 ACAACTTAA
1 ATAACTTAC
*
5653506 ATAGCTTAC
1 ATAACTTAC
*
5653515 TTAA--TAC
1 ATAACTTAC
5653522 ATAACTTAC
1 ATAACTTAC
5653531 ATAACTT--
1 ATAACTTAC
*
5653538 ATACACGTAC
1 ATA-ACTTAC
5653548 ATAACTTAC
1 ATAACTTAC
*
5653557 ATAATTTAC
1 ATAACTTAC
5653566 TTAATACATA
Statistics
Matches: 92, Mismatches: 20, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
7 15 0.16
8 4 0.04
9 61 0.66
10 12 0.13
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:5653457 original size:38 final size:38
Alignment explanation
Indices: 5653370--5653461 Score: 114
Period size: 39 Copynumber: 2.4 Consensus size: 38
5653360 CTTGCATGTT
*
5653370 AACTTACATAATACATGACTTATATAAAATTCTCAAATA
1 AACTTACATAATACATGACTTACATAAAA-TCTCAAATA
* * * *
5653409 AACTTACATAATACATTAGTTACATAATAA-CTTATATA
1 AACTTACATAATACATGACTTACATAA-AATCTCAAATA
5653447 AACTTACATAATACA
1 AACTTACATAATACA
5653462 CATTACTTAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
38 21 0.45
39 24 0.51
40 2 0.04
ACGTcount: A:0.49, C:0.15, G:0.02, T:0.34
Consensus pattern (38 bp):
AACTTACATAATACATGACTTACATAAAATCTCAAATA
Found at i:5653471 original size:18 final size:17
Alignment explanation
Indices: 5653410--5653495 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 17
5653400 TCTCAAATAA
5653410 ACTTACATAAT-ACATT
1 ACTTACATAATAACATT
*
5653426 AGTTACATAATAACTTATAT
1 ACTTACATAATAAC--AT-T
5653446 AAACTTACATAATACACATT
1 --ACTTACATAATA-ACATT
*
5653466 ACTTACATAGCAT-ACATA
1 ACTTACATA--ATAACATT
5653484 ACTTACATAATA
1 ACTTACATAATA
5653496 CACAACTTAA
Statistics
Matches: 57, Mismatches: 3, Indels: 19
0.72 0.04 0.24
Matches are distributed among these distances:
16 12 0.21
17 2 0.04
18 22 0.39
19 2 0.04
20 4 0.07
21 2 0.04
22 11 0.19
23 2 0.04
ACGTcount: A:0.47, C:0.17, G:0.02, T:0.34
Consensus pattern (17 bp):
ACTTACATAATAACATT
Found at i:5653513 original size:25 final size:25
Alignment explanation
Indices: 5653481--5653538 Score: 80
Period size: 25 Copynumber: 2.3 Consensus size: 25
5653471 CATAGCATAC
5653481 ATAACTTACATAATACACAACTTAA
1 ATAACTTACATAATACACAACTTAA
* * * *
5653506 ATAGCTTACTTAATACATAACTTAC
1 ATAACTTACATAATACACAACTTAA
5653531 ATAACTTA
1 ATAACTTA
5653539 TACACGTACA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.47, C:0.19, G:0.02, T:0.33
Consensus pattern (25 bp):
ATAACTTACATAATACACAACTTAA
Found at i:5659108 original size:21 final size:20
Alignment explanation
Indices: 5659082--5659152 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 20
5659072 CTACAACTTA
5659082 AAGCAGAGGTGGCAGCGAGGG
1 AAGCAGAGGT-GCAGCGAGGG
* *
5659103 AAGCAGAGGCCGCAGTGAGGG
1 AAGCAGAGG-TGCAGCGAGGG
**
5659124 AAGCAGAGGCTGCAGCGAGAC
1 AAGCAGAGG-TGCAGCGAGGG
5659145 AAGCAGAG
1 AAGCAGAG
5659153 CAGTCCAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.45, T:0.04
Consensus pattern (20 bp):
AAGCAGAGGTGCAGCGAGGG
Found at i:5659604 original size:43 final size:42
Alignment explanation
Indices: 5659554--5659716 Score: 236
Period size: 42 Copynumber: 3.8 Consensus size: 42
5659544 TAAGTATAAA
5659554 CGCCGCTAAAGAACATGGTCTTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTC-TTTAGCGGCGTTTTTTTCTAAG
** * * * *
5659597 CAACGCTAAAGAAAATGGTATTTAGTGGCGTTTTTTTTGTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCG-TTTTTTTCTAAG
*
5659640 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
*
5659682 CGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
5659717 GTTTGTAAAC
Statistics
Matches: 104, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
42 53 0.51
43 51 0.49
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:5659621 original size:85 final size:85
Alignment explanation
Indices: 5659532--5659712 Score: 229
Period size: 85 Copynumber: 2.1 Consensus size: 85
5659522 TTTCATGTTC
5659532 TTTAGCGGCG-CTTAAGTATAAACGCCGCTAAAGAACATGGTCTTTTAGCGGCGTTTTTTTCTAA
1 TTTAGCGGCGTCTTAAGTATAAACGCCGCTAAAGAACATGGTC-TTTAGCGGCGTTTTTTTCTAA
5659596 GCAACGCTAAAGAAAATGGTA
65 GCAACGCTAAAGAAAATGGTA
* * *** * * *
5659617 TTTAGTGGCGTTTTTTTTGTAAGCGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCTAAG
1 TTTAGCGGCGTCTTAAGTATAAACGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
** * *
5659682 CGCCGCTAAAGAACATGGTC
66 CAACGCTAAAGAAAATGGTA
*
5659702 TTTAACGGCGT
1 TTTAGCGGCGT
5659713 TTTTGTTTGT
Statistics
Matches: 81, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
85 56 0.69
86 25 0.31
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.33
Consensus pattern (85 bp):
TTTAGCGGCGTCTTAAGTATAAACGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
CAACGCTAAAGAAAATGGTA
Found at i:5659713 original size:85 final size:87
Alignment explanation
Indices: 5659554--5659724 Score: 265
Period size: 85 Copynumber: 2.0 Consensus size: 87
5659544 TAAGTATAAA
5659554 CGCCGCTAAAGAACATGGTCTTTTAGCGGCGTTTTTTTCTAAGCAACGCTAAAGAAAATGGTATT
1 CGCCGCTAAAGAACATGGTCTTTTAGCGGCGTTTTTTTCTAAGCAACGCTAAAGAAAATGGTATT
**
5659619 TAGTGGCGTTTTT-TTTGTAAG
66 TAACGGCGTTTTTGTTTGTAAG
* ** * *
5659640 CGCCGCTAAAGAACATGTTC-TTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGGTCTT
1 CGCCGCTAAAGAACATGGTCTTTTAGCGGCGTTTTTTTCTAAGCAACGCTAAAGAAAATGGTATT
5659704 TAACGGCGTTTTTGTTTGTAA
66 TAACGGCGTTTTTGTTTGTAA
5659725 ACGCTGCAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
85 51 0.66
86 26 0.34
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (87 bp):
CGCCGCTAAAGAACATGGTCTTTTAGCGGCGTTTTTTTCTAAGCAACGCTAAAGAAAATGGTATT
TAACGGCGTTTTTGTTTGTAAG
Found at i:5661049 original size:3 final size:3
Alignment explanation
Indices: 5661041--5661073 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
5661031 CTTAATAAAT
5661041 TTA TTA TTA TTA TTA TTA TTA TTA TTA TATA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT
5661074 TTCATTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:5661234 original size:18 final size:16
Alignment explanation
Indices: 5661211--5661249 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 16
5661201 ATACTTTTTT
5661211 TATATATGTACATATCTA
1 TATATATGT--ATATCTA
5661229 TATATATGTATATCTA
1 TATATATGTATATCTA
5661245 TATAT
1 TATAT
5661250 TTTCCATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.57
18 9 0.43
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (16 bp):
TATATATGTATATCTA
Found at i:5661274 original size:2 final size:2
Alignment explanation
Indices: 5661269--5661336 Score: 50
Period size: 2 Copynumber: 33.0 Consensus size: 2
5661259 TTTCTCACGA
* * *
5661269 AT AT AT GT AT AT AT ACT CAT AT AT AT AT TT AT AT AT AT -T GAA
1 AT AT AT AT AT AT AT A-T -AT AT AT AT AT AT AT AT AT AT AT -AT
*
5661311 AT AT AGT -T TT AT AT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT
5661337 CTTATTTTAT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
1 2 0.04
2 47 0.89
3 3 0.06
4 1 0.02
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5661301 original size:10 final size:10
Alignment explanation
Indices: 5661269--5661368 Score: 60
Period size: 10 Copynumber: 9.6 Consensus size: 10
5661259 TTTCTCACGA
*
5661269 ATATATGTAT
1 ATATATTTAT
*
5661279 ATATACTCATAT
1 ATATA-T-TTAT
5661291 ATATATTTAT
1 ATATATTTAT
* *
5661301 ATATATTGAA
1 ATATATTTAT
5661311 ATATAGTTT-T
1 ATATA-TTTAT
*
5661321 ATATATATAT
1 ATATATTTAT
5661331 ATATATCTTAT
1 ATATAT-TTAT
*
5661342 -TTTATCTTATT
1 ATATAT-TTA-T
* *
5661353 TTATTTTTAT
1 ATATATTTAT
5661363 ATATAT
1 ATATAT
5661369 CTCACATATA
Statistics
Matches: 70, Mismatches: 13, Indels: 14
0.72 0.13 0.14
Matches are distributed among these distances:
9 2 0.03
10 46 0.66
11 11 0.16
12 11 0.16
ACGTcount: A:0.37, C:0.04, G:0.03, T:0.56
Consensus pattern (10 bp):
ATATATTTAT
Found at i:5661314 original size:22 final size:22
Alignment explanation
Indices: 5661269--5661328 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
5661259 TTTCTCACGA
* * *
5661269 ATATATGTATATATACTCATAT
1 ATATATTTATATATATTCAAAT
*
5661291 ATATATTTATATATATTGAAAT
1 ATATATTTATATATATTCAAAT
5661313 ATAGT-TTTATATATAT
1 ATA-TATTTATATATAT
5661329 ATATATATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (22 bp):
ATATATTTATATATATTCAAAT
Found at i:5665916 original size:9 final size:9
Alignment explanation
Indices: 5665904--5665951 Score: 50
Period size: 9 Copynumber: 5.8 Consensus size: 9
5665894 CAAAAAAATG
5665904 TGAAAAAAA
1 TGAAAAAAA
*
5665913 TGAAAATAA
1 TGAAAAAAA
*
5665922 --AAAAAAT
1 TGAAAAAAA
5665929 TG--AAAAA
1 TGAAAAAAA
5665936 TGAAAAAAA
1 TGAAAAAAA
5665945 TGAAAAA
1 TGAAAAA
5665952 GTAAAAATGG
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
7 11 0.35
9 20 0.65
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (9 bp):
TGAAAAAAA
Found at i:5665927 original size:16 final size:16
Alignment explanation
Indices: 5665906--5665958 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 16
5665896 AAAAAATGTG
5665906 AAAAAAATG-AAAATA
1 AAAAAAATGAAAAATA
*
5665921 AAAAAAATTGAAAAATG
1 AAAAAAA-TGAAAAATA
5665938 AAAAAAATGAAAAAGTA
1 AAAAAAATGAAAAA-TA
5665955 AAAA
1 AAAA
5665959 TGGAGAGGCT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 7 0.21
16 9 0.27
17 17 0.52
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.13
Consensus pattern (16 bp):
AAAAAAATGAAAAATA
Found at i:5665957 original size:23 final size:23
Alignment explanation
Indices: 5665908--5665960 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
5665898 AAAATGTGAA
*
5665908 AAAAATGAAAATAAAAAAAATTG
1 AAAAATGAAAATAAAAAAAAGTG
5665931 AAAAATGAAAA-AAATGAAAAAGT-
1 AAAAATGAAAATAAA--AAAAAGTG
5665954 AAAAATG
1 AAAAATG
5665961 GAGAGGCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 3 0.11
23 18 0.67
24 6 0.22
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (23 bp):
AAAAATGAAAATAAAAAAAAGTG
Found at i:5667685 original size:186 final size:187
Alignment explanation
Indices: 5667158--5667950 Score: 1240
Period size: 186 Copynumber: 4.3 Consensus size: 187
5667148 AACAGATCAA
*
5667158 CGAAGATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAGATCTTGT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAGATCTTGT
** * *
5667223 CTTCCTGTATTAGGCAGTGGAATAGATCGAAGAA-AGCAGATCTTGTCTTCCTGTTTTAGGCAGC
66 CTTCCTGTATTAGGCAGCAGAGTAGATCGAAGAATAGCAGATCTTGTCTTCCTGTATTAGGCAGC
* *
5667287 GGAGTAGATCGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGTGGAGTAGAT
131 AGAGTAGATCGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* ** * *
5667344 CGAAGATATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAAAGGAGATCGAAGATAGCAGATCTT
1 CGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAGATCTT
* * * *
5667409 GTCTTCTTGTATTTGGCAGCTA-AGGAGGTCGAAG-ATAGCAGATCTTGTCTTCCTGTATTAGGC
64 GTCTTCCTGTATTAGGCAGC-AGAGTAGATCGAAGAATAGCAGATCTTGTCTTCCTGTATTAGGC
* *
5667472 AGCGGAGGAGATCGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
128 AGCAGAGTAGATCGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
** *
5667532 CGAAGAAAGCAGATCTTGTCTTTTTGTATTAGGCAGCGGAGTAGATCGAAGAAAGTAGATCTTGT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAGATCTTGT
5667597 CTTCCTGTATTAGGCAGCAGAGTAGATCGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAG
66 CTTCCTGTATTAGGCAGCAGAGTAGATCGAAGA-ATAGCAGATCTTGTCTTCCTGTATTAGGCAG
5667662 CAGAGTAGATCGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
130 CAGAGTAGATCGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
**
5667718 CGAAGAAAGCAGATCTTGTCTTTTTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAGATCTTGT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAGATCTTGT
* *
5667783 CTTCCTGTATTAGGCAGTAGAGTAGATCAAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAG
66 CTTCCTGTATTAGGCAGCAGAGTAGATCGAAGA-ATAGCAGATCTTGTCTTCCTGTATTAGGCAG
*
5667848 CAGAGTAGATCGAA-A-AAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
130 CAGAGTAGATCGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* *
5667904 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGTGAAGTAGATC
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATC
5667951 AAAAATGGCA
Statistics
Matches: 562, Mismatches: 37, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
185 3 0.01
186 344 0.61
187 3 0.01
188 212 0.38
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (187 bp):
CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAGATCTTGT
CTTCCTGTATTAGGCAGCAGAGTAGATCGAAGAATAGCAGATCTTGTCTTCCTGTATTAGGCAGC
AGAGTAGATCGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
Found at i:5667940 original size:140 final size:140
Alignment explanation
Indices: 5667158--5667939 Score: 1225
Period size: 140 Copynumber: 5.6 Consensus size: 140
5667148 AACAGATCAA
*
5667158 CGAAGATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGA-A-AGCAGATCTT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGATATAGCAGATCTT
** * *
5667221 GTCTTCCTGTATTAGGCAGTGGAATAGATCGAAGAAAGCAGATCTTGTCTTCCTGTTTTAGGCAG
66 GTCTTCCTGTATTAGGCAGCAGAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAG
5667286 CGGAGTAGAT
131 CGGAGTAGAT
*
5667296 CGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGTGGAGTAGATCGAAGATATAGCAGATC
1 CGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGATATAGCAGATC
* * * * * *
5667361 TTGTCTTCCTGTATTTGGCAGCAAAGGAGATCGAAGATAGCAGATCTTGTCTTCTTGTATTTGGC
64 TTGTCTTCCTGTATTAGGCAGCAGAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGC
** * *
5667426 AGCTAAGGAGGT
129 AGCGGAGTAGAT
* *
5667438 CGAAGATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGGAGATCGAAGATATAGCAGATCTT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGATATAGCAGATCTT
* **
5667503 GTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAGATCTTGTCTTTTTGTATTAGGCAG
66 GTCTTCCTGTATTAGGCAGCAGAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAG
5667568 CGGAGTAGAT
131 CGGAGTAGAT
* *
5667578 CGAAGAAAGTAGATCTTGTCTTCCTGTATTAGGCAGCAGAGTAGATCGAAGATATAGCAGATCTT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGATATAGCAGATCTT
5667643 GTCTTCCTGTATTAGGCAGCAGAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAG
66 GTCTTCCTGTATTAGGCAGCAGAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAG
5667708 CGGAGTAGAT
131 CGGAGTAGAT
**
5667718 CGAAGAAAGCAGATCTTGTCTTTTTGTATTAGGCAGCGGAGTAGATCGAAGA-A-AGCAGATCTT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGATATAGCAGATCTT
* *
5667781 GTCTTCCTGTATTAGGCAGTAGAGTAGATCAAAGATATAGCAGATCTTGTCTTCCTGTATTAGGC
66 GTCTTCCTGTATTAGGCAGCAGAGTAGATCGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGC
*
5667846 AGCAGAGTAGAT
129 AGCGGAGTAGAT
*
5667858 CGAAAAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGA-A-AGCAGATCTT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGATATAGCAGATCTT
5667921 GTCTTCCTGTATTAGGCAG
66 GTCTTCCTGTATTAGGCAG
5667940 TGAAGTAGAT
Statistics
Matches: 591, Mismatches: 47, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
138 49 0.08
139 2 0.00
140 462 0.78
141 1 0.00
142 77 0.13
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (140 bp):
CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGATATAGCAGATCTT
GTCTTCCTGTATTAGGCAGCAGAGTAGATCGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAG
CGGAGTAGAT
Found at i:5667963 original size:46 final size:46
Alignment explanation
Indices: 5667158--5667950 Score: 1208
Period size: 46 Copynumber: 17.0 Consensus size: 46
5667148 AACAGATCAA
*
5667158 CGAAGATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* *
5667204 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGTGGAATAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
*
5667250 CGAAGAAAGCAGATCTTGTCTTCCTGTTTTAGGCAGCGGAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
*
5667296 CGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGTGGAGTAGAT
1 CGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* ** *
5667344 CGAAGATATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAAAGGAGAT
1 CGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* * * ** * *
5667392 CGAAGATAGCAGATCTTGTCTTCTTGTATTTGGCAGCTAAGGAGGT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* *
5667438 CGAAGATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGGAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
5667484 CGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
1 CGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
**
5667532 CGAAGAAAGCAGATCTTGTCTTTTTGTATTAGGCAGCGGAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* *
5667578 CGAAGAAAGTAGATCTTGTCTTCCTGTATTAGGCAGCAGAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
*
5667624 CGAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCAGAGTAGAT
1 CGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
5667672 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
**
5667718 CGAAGAAAGCAGATCTTGTCTTTTTGTATTAGGCAGCGGAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
**
5667764 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGTAGAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* *
5667810 CAAAGATATAGCAGATCTTGTCTTCCTGTATTAGGCAGCAGAGTAGAT
1 CGAAGA-A-AGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
*
5667858 CGAAAAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
* *
5667904 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGTGAAGTAGAT
1 CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
5667950 C
1 C
5667951 AAAAATGGCA
Statistics
Matches: 693, Mismatches: 46, Indels: 16
0.92 0.06 0.02
Matches are distributed among these distances:
46 471 0.68
47 6 0.01
48 216 0.31
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (46 bp):
CGAAGAAAGCAGATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGAT
Found at i:5668472 original size:52 final size:52
Alignment explanation
Indices: 5668406--5668664 Score: 180
Period size: 52 Copynumber: 5.3 Consensus size: 52
5668396 CCTGGTTGGT
*
5668406 AGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTAC
1 AGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTAC
* * * * * *
5668458 AGTGGAGTACATTGAAG--C--CGAT---A-ATTCTATCTCCCTG-G-TTGGC
1 AGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACT-AC
* *
5668501 AGTGGAATAGAATGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTAC
1 AGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTAC
* * * * * *
5668553 AGTGGAGTACATTGAAG--C--CGAT---A-ATTCTATCTCCCTG-G-TTGGC
1 AGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACT-AC
* * * *
5668596 AGTGGAATAGAATGAAGATTAAAGATGGCAGATTTTACCTCTCTGTGACTAC
1 AGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTAC
*
5668648 AGTGGAGTACATTGAAG
1 AGTGGAATACATTGAAG
5668665 CTGATAATTC
Statistics
Matches: 149, Mismatches: 36, Indels: 44
0.65 0.16 0.19
Matches are distributed among these distances:
42 2 0.01
43 32 0.21
44 24 0.16
45 3 0.02
47 6 0.04
48 6 0.04
50 4 0.03
51 23 0.15
52 47 0.32
53 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (52 bp):
AGTGGAATACATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGTGACTAC
Found at i:5668710 original size:95 final size:95
Alignment explanation
Indices: 5667946--5668709 Score: 1357
Period size: 95 Copynumber: 8.0 Consensus size: 95
5667936 GCAGTGAAGT
* *
5667946 AGATCAAAAATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCAATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
5668011 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
66 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
** *
5668041 AGATTGAAGATGGCAGATTTTACCTCCCTGTGACTATAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
*
5668106 ATCTCCCTGGTTGGCAGTAGAATAGAATGA
66 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
5668136 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
* * *
5668201 ATCTCCCTGGTTAGCACTGGAATAGATTGA
66 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
5668231 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
5668296 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
66 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
* * * *
5668326 AGATCGAAGATGACAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTTAACCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
* *
5668391 ATCTCCCTGGTTGGTAGTGGAATAGATTGA
66 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
5668421 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
5668486 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
66 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
5668516 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
5668581 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
66 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
* * *
5668611 AGATTAAAGATGGCAGATTTTACCTCTCTGTGACTACAGTGGAGTACATTGAAGCTGATAATTCT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
*
5668676 ATCTCCCTGGTTGGCAGTGGAATAGATTGA
66 ATCTCCCTGGTTGGCAGTGGAATAGAATGA
5668706 AGAT
1 AGAT
5668710 TGCAGATTCT
Statistics
Matches: 637, Mismatches: 32, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
95 637 1.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCT
ATCTCCCTGGTTGGCAGTGGAATAGAATGA
Found at i:5668973 original size:132 final size:133
Alignment explanation
Indices: 5668695--5668973 Score: 293
Period size: 132 Copynumber: 2.1 Consensus size: 133
5668685 GTTGGCAGTG
*
5668695 GAATA-GATTGAAGATTGCAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA
1 GAATAGGATTGAAGATTGCAAATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA
* * * * ** *
5668759 ATCTTATCTTCCCAATACAGTGGAGAAGCATATTTAAGCCATTAGTCCTATCACCCTAAGTAGTA
66 ATCTTATCTTCCCAATACAGAGGAGAAGCAAATTTAAACCATCAAACCTAGCACCCTAAGTAGTA
***
5668824 GTG
131 ACA
** * *
5668827 GAATAGG-TCAAAGATTGTAAATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAATATGGTGA
1 GAATAGGATTGAAGATTGCAAATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA
* * * *
5668891 ATCTTATCTTCCCAAGGTA-GGAGG-GAAGTAAATTTAAACCA-CAAACCTCGCCCCCTGAAGTT
66 ATCTTATCTTCCCAA--TACAGAGGAGAAGCAAATTTAAACCATCAAACCTAGCACCCT-AAG-T
5668953 A-TAACA
127 AGTAACA
*
5668959 GAGT-GGATTGAAGAT
1 GAATAGGATTGAAGAT
5668974 ATAAGTCAGA
Statistics
Matches: 119, Mismatches: 22, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
131 11 0.09
132 100 0.84
133 6 0.05
134 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (133 bp):
GAATAGGATTGAAGATTGCAAATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA
ATCTTATCTTCCCAATACAGAGGAGAAGCAAATTTAAACCATCAAACCTAGCACCCTAAGTAGTA
ACA
Found at i:5669782 original size:12 final size:12
Alignment explanation
Indices: 5669765--5669790 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
5669755 CACCACGTGT
5669765 GGTGGCCGGCGC
1 GGTGGCCGGCGC
5669777 GGTGGCCGGCGC
1 GGTGGCCGGCGC
5669789 GG
1 GG
5669791 CGGCACTGCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.31, G:0.62, T:0.08
Consensus pattern (12 bp):
GGTGGCCGGCGC
Found at i:5669803 original size:20 final size:20
Alignment explanation
Indices: 5669780--5669842 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
5669770 CCGGCGCGGT
*
5669780 GGCCGGCGCGGCGGCACTGC
1 GGCCGGTGCGGCGGCACTGC
5669800 GGCCGGTGCGGCGGCACTGC
1 GGCCGGTGCGGCGGCACTGC
5669820 GGCCGGTGCGGCGGCACTGC
1 GGCCGGTGCGGCGGCACTGC
5669840 GGC
1 GGC
5669843 GGTCCCTCGC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.05, C:0.37, G:0.51, T:0.08
Consensus pattern (20 bp):
GGCCGGTGCGGCGGCACTGC
Found at i:5670548 original size:18 final size:16
Alignment explanation
Indices: 5670525--5670563 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 16
5670515 ATACTTTTTT
5670525 TATATATGTACATATCTA
1 TATATATGT--ATATCTA
5670543 TATATATGTATATCTA
1 TATATATGTATATCTA
5670559 TATAT
1 TATAT
5670564 TTTCCATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.57
18 9 0.43
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (16 bp):
TATATATGTATATCTA
Found at i:5670615 original size:10 final size:10
Alignment explanation
Indices: 5670583--5670681 Score: 55
Period size: 10 Copynumber: 9.8 Consensus size: 10
5670573 TTTCTCACGA
*
5670583 ATATATGTAT
1 ATATATTTAT
*
5670593 ATATACTCATAT
1 ATATA-T-TTAT
5670605 ATATATTTAT
1 ATATATTTAT
* *
5670615 ATATATTGAA
1 ATATATTTAT
5670625 ATATAGTTT-T
1 ATATA-TTTAT
5670635 ATATA--TAT
1 ATATATTTAT
5670643 ATATATCTTAT
1 ATATAT-TTAT
*
5670654 -TTTATCTTAT
1 ATATAT-TTAT
*
5670664 -TTTATTTTAT
1 ATATA-TTTAT
5670674 ATATATTT
1 ATATATTT
5670682 CACATATACA
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
7 1 0.01
8 6 0.08
10 46 0.64
11 11 0.15
12 8 0.11
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.57
Consensus pattern (10 bp):
ATATATTTAT
Found at i:5670628 original size:22 final size:22
Alignment explanation
Indices: 5670583--5670642 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
5670573 TTTCTCACGA
* * *
5670583 ATATATGTATATATACTCATAT
1 ATATATTTATATATATTCAAAT
*
5670605 ATATATTTATATATATTGAAAT
1 ATATATTTATATATATTCAAAT
5670627 ATAGT-TTTATATATAT
1 ATA-TATTTATATATAT
5670643 ATATATCTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (22 bp):
ATATATTTATATATATTCAAAT
Found at i:5673879 original size:16 final size:17
Alignment explanation
Indices: 5673846--5673879 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
5673836 TATTAAGTAG
*
5673846 TAATTACAAAAGATTTA
1 TAATTACAAAAGAATTA
5673863 TAATTAC-AAAGAATTA
1 TAATTACAAAAGAATTA
5673879 T
1 T
5673880 GATTTTCTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (17 bp):
TAATTACAAAAGAATTA
Found at i:5675812 original size:144 final size:144
Alignment explanation
Indices: 5675647--5676080 Score: 789
Period size: 144 Copynumber: 3.0 Consensus size: 144
5675637 AGTCAATGTG
5675647 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
5675712 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
5675777 TCTCTCCAACAATA
131 TCTCTCCAACAATA
5675791 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
*
5675856 GGGAACCAAATCAATGGATCTATCCCATTCGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
*
5675921 TCTCTCCAGCAATA
131 TCTCTCCAACAATA
5675935 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
* * *
5676000 GGGAACCAGATCAATGGATCTATCCCATTAGAAATTGGACATTTGAGGAATTTGACTTATTTG-G
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
**
5676064 ATCTCAACAACAATA
131 -TCTCTCCAACAATA
5676079 GA
1 GA
5676081 CTTGGTTTAA
Statistics
Matches: 280, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
143 1 0.00
144 279 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.33
Consensus pattern (144 bp):
GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
TCTCTCCAACAATA
Found at i:5679668 original size:51 final size:51
Alignment explanation
Indices: 5679556--5680267 Score: 749
Period size: 46 Copynumber: 14.6 Consensus size: 51
5679546 GCATCGCAGT
* * * * * *
5679556 AGATTAAAGCTGAAGGTAGCAAATCTTATTTCCCTAGAGTCGCAGT-----
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
*
5679602 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * *
5679653 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGT-----
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * *
5679699 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCATTGCGGTGGAAC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * * * * *
5679750 GGATTAAAGCTGAAGGCAACAAATCTTATTTCCCTAGCGTCGCAGT-----
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * *
5679796 AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTAGTGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * * * **
5679847 AGATTAAAGCCGAAGGCAGCAAATCTTATTTCCCTAGCGTCACAGT-----
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * *
5679893 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTCGCGTCGCAGT-----
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* *
5679939 AGATTAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* *
5679990 AGATTAAAGCTGAAGGTAGCGAATCTTATTTCCCTT-GCGTCGCAGT-----
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTT-CCTTGGCGTTGCAGTGGAAC
* * *
5680036 AGATTAAAGCTGAAGGCAGTGAATCTCAATTCCTTGGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* *
5680087 AGATTAAAGCTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAAC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * * *
5680138 AGATTAAAGTTGAAGGCAGCTAATCTTATTTCTTTGGTGTTGCAGT-----
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* *
5680184 AGATTAAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
5680235 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCC
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCC
5680268 CTAGCATCAC
Statistics
Matches: 559, Mismatches: 75, Indels: 59
0.81 0.11 0.09
Matches are distributed among these distances:
45 4 0.01
46 279 0.50
51 272 0.49
52 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (51 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
Found at i:5679675 original size:97 final size:97
Alignment explanation
Indices: 5679556--5680272 Score: 862
Period size: 97 Copynumber: 7.4 Consensus size: 97
5679546 GCATCGCAGT
* *
5679556 AGATTAAAGCTGAAGGTAGCAAATCTTATTTCCCTAGAGTCGCAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
*
5679621 CGAATCTCATTTCCTTGGCGTTGCAGTGGAAC
66 CGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
*
5679653 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* * *
5679718 CGAATCTCATTTCCTTGGCATTGCGGTGGAAC
66 CGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* *
5679750 GGATTAAAGCTGAAGGCAACAAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* * *
5679815 CGAATCTCATTTCCTTAGTGTTGCAGTGGAAC
66 CGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* *
5679847 AGATTAAAGCCGAAGGCAGCAAATCTTATTTCCCTAGCGTCACAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* * *
5679912 CGAATCTTATTTCCCTCGCGTCGCAGT-----
66 CGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * * * * *
5679939 AGATTAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAA
1 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGCAGT-----AGATTAAAGCTGAA
* *
5680004 GGTAGCGAATCTTATTTCCCTT-GCGTCGCAGT-----
61 GGCAGCGAATCTTATTT-CCTTGGCGTTGCAGTGGAAC
** * * * * *
5680036 AGATTAAAGCTGAAGGCAGTGAATCTCAATTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAA
1 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGCAGT-----AGATTAAAGCTGAA
* *
5680101 GACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAAC
61 GGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
* * ** * * * *
5680138 AGATTAAAGTTGAAGGCAGCTAATCTTATTTCTTTGGTGTTGCAGTAGATTAAAGTTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
*
5680203 AGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
66 CGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
*
5680235 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGC
1 AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGC
5680273 ATCACAGTGA
Statistics
Matches: 553, Mismatches: 55, Indels: 24
0.88 0.09 0.04
Matches are distributed among these distances:
92 38 0.07
96 4 0.01
97 469 0.85
98 3 0.01
102 39 0.07
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (97 bp):
AGATTAAAGCTGAAGGCAGCAAATCTTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAG
CGAATCTTATTTCCTTGGCGTTGCAGTGGAAC
Found at i:5679800 original size:143 final size:139
Alignment explanation
Indices: 5679514--5680269 Score: 609
Period size: 143 Copynumber: 5.2 Consensus size: 139
5679504 GCGAGGGTTG
* * * * *
5679514 TAAAGCTAAAGGCAGCAAATTTTATTCCCCTGGCATCGCAGT-AGATTAAAGCTGAAGGTAGCAA
1 TAAAGCTAAAGGCAGCAAATCTCATTTCCCTGGCGTCGCAGTAAGATTAAAGCTGAAGGCAGCAA
* * *
5679578 ATCTTATTTCCCTAG-AGTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGT
66 ATCTTATTTCCCTAGCA-TCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGT
*
5679642 TGCAGTGGAACAGAT
130 CGCAGT-----AGAT
* * *
5679657 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGT-AGATTAAAGCTGAAGGCAGCGA
1 TAAAGCTAAAGGCAGCAAATCTCATTTCCCTGGCGTCGCAGTAAGATTAAAGCTGAAGGCAGCAA
* * * * * * *
5679721 ATCTCATTTCCTTGGCATTGCGGTGGAACGGATTAAAGCTGAAGGCAACAAATCTTATTTCCCTA
66 ATCTTATTTCCCTAGCATCGCAGT---A--GATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTA
5679786 GCGTCGCAGTAGAT
126 GCGTCGCAGTAGAT
* * * * * * *
5679800 TAAAGCTGAAGGCAGCGAATCTCATTTCCTTAGTGTTGCAGTGGAACAGATTAAAGCCGAAGGCA
1 TAAAGCTAAAGGCAGCAAATCTCATTTCCCTGGCGTCGCAGT---A-AGATTAAAGCTGAAGGCA
* * *
5679865 GCAAATCTTATTTCCCTAGCGTCACAGTAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTCG
62 GCAAATCTTATTTCCCTAGCATCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAG
5679930 CGTCGCAGTAGAT
127 CGTCGCAGTAGAT
* * * *
5679943 TAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGTA
1 TAAAGCTAAAGGCAGCAAATCTCATTTCCCTGGCGTCGCAGT---A-AGATTAAAGCTGAAGGCA
* * * * * * * *
5680008 GCGAATCTTATTTCCCTTGCGTCGCAGTAGATTAAAGCTGAAGGCAGTGAATCTCAATTCCTTGG
62 GCAAATCTTATTTCCCTAGCATCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAG
*
5680073 CGTTGCAGTGGAACAGAT
127 CGTCGCAGT-----AGAT
* * * * * * * *
5680091 TAAAGCTGAAGACAGCGAATCTTATTTCCTTGGCATTGCAGTGGAACAGATTAAAGTTGAAGGCA
1 TAAAGCTAAAGGCAGCAAATCTCATTTCCCTGGCGTCGCAGT---A-AGATTAAAGCTGAAGGCA
* ** * ** * * * * *
5680156 GCTAATCTTATTTCTTTGGTGTTGCAGTAGATTAAAGTTGAAGGCAGAGAATCTTATTTCCTTGG
62 GCAAATCTTATTTCCCTAGCATCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAG
*
5680221 CGTTGCAGTGGAACAGAT
127 CGTCGCAGT-----AGAT
* * *
5680239 TAAAGCTGAAGGCAGCGAATCTTATTTCCCT
1 TAAAGCTAAAGGCAGCAAATCTCATTTCCCT
5680270 AGCATCACAG
Statistics
Matches: 530, Mismatches: 67, Indels: 27
0.85 0.11 0.04
Matches are distributed among these distances:
143 286 0.54
144 1 0.00
145 1 0.00
146 1 0.00
148 241 0.45
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (139 bp):
TAAAGCTAAAGGCAGCAAATCTCATTTCCCTGGCGTCGCAGTAAGATTAAAGCTGAAGGCAGCAA
ATCTTATTTCCCTAGCATCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTC
GCAGTAGAT
Found at i:5692384 original size:97 final size:97
Alignment explanation
Indices: 5692262--5700222 Score: 2490
Period size: 97 Copynumber: 82.1 Consensus size: 97
5692252 TAAAGCCCAT
* * * * *
5692262 AATCTCATTTCGTTGGCGTTTCAGTGGAATAGATTAAAGCTAAAGGCAACGAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* *
5692327 -GACGTCGCAGTAGATTAAAGCTGAAGGCACCA
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* ** * * *
5692359 AATCTCATTTCCATGATGTTGCAGTGGAACAGGTTAAAGCTAAAGCCAGCGAATCTTATTT-CCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5692423 TGGGATCGCAGTAGATTAAACCTGAAGGTAGTG
66 AGCG-TCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * *
5692456 AATCTCATTTCCTTGGC-TTGTAGTGGAATAAATTAAAGCTGAATGCAGCAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
*
5692520 AGCGTCGTAGTAGATTAAAGCTGAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * *
5692552 AATCTCATTTTCTTGGCATTGTAGTGGAACAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* *
5692617 AGTGTCGCAATAGATTAAAGCTGAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * *
5692649 AATCTTATTTCCTTGGCGTTGTAGTGGAACAAATTAAAGCTGAAGGCAGTGAATCTTATTTTCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* *
5692714 GGCGTCGCAGTAGATTAAAGCTAAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * *
5692746 AATCTCATTTCCTTGGCGTTACAGTGGAACAGATTAAAGCTGGAGCCAACGAATCTTATTTCTCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
*
5692811 AGCGTCACAGTAGATTAAAGCTGAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * * * * ** * * *
5692843 AATCTTATTTCCCTAGCATCGCAGTGGGA-TGGTTTGAGGTTATCATGGCA--G-ATCTTATCTC
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA--A-GGCAGCGAATCTTATTTC
** * ** * ** * * * * *
5692904 TATTA-AGTTTCAGTGGAGCAGA-TTAAAGCCA-CA
63 -CCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * ** ** * * * *
5692937 AACCTTA-TCCCTCTGAAGTTGCAGTGGGGCAGGTTGAA---G-A-G-A-CAAATCTTATTTTCC
1 AATCTCATTTCCT-TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * ** *
5692994 TAGCATCGCAGTGGA--ATGGTTTGAAGAAG-ATGACG
65 TAGCGTCGCAGTAGATTAAAG-CTGAAG--GCA-G-CG
* ** * ** ** ** **
5693029 AATCTTATAACCCTGAAGTTGCAGTGGAGTAGATTAAAGC------C-GATAATCTTATTTCTTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5693087 TGCGTTGTAGTGGAACAGATTAAAGCTAAAGGCAGCA
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * *
5693124 AATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAAGCTAAAGGCAGCGAATCTTA-TTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC-
* * * * *
5693183 TGGTGTTGTAGTGGAATAGATTAAAGCTGAAGGCAGCA
65 TAGCGTCGCA---G--TAGATTAAAGCTGAAGGCAGCG
* ** * ** * *
5693221 AATCTTATTTTCC-TGGCGACGCAGT-----AGATTAAAGCTGAAGGCAACGAATCTCCTTTTCT
1 AATCTCA-TTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * * * * * * *
5693280 TGGTGTTGTAGTGAAACAGATTAATGTTGAGGGCAGCA
65 TAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * *
5693318 AATCTTATTTACTTGGCGTCGCAGT-----AGATTAAAGTTGAAGGCAGCGAATCTCATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5693378 GGCGTTGTAGTGGAATAGATTAAAGCTAAAGGCAGCG
66 AGCGTCGCA---G--TAGATTAAAGCTGAAGGCAGCG
* *
5693415 AATCTGATTT-CTCTGGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
1 AATCTCATTTCCT-TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * * * *
5693474 TAGCGTCACAGTAGATTAAATCAGAAGGAAACG
65 TAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* *** * ** * *** * *
5693507 AGTAGGATGGT--TTGAAGTTATCA-TGG--CAGATTTTATCTCCTTGAAGTCGTAGTAGAA-CA
1 AATCTCAT-TTCCTTGGCGTT-GCAGTGGAACAGA--TTA-AAGC-TGAAG--GCAG-CGAATC-
*** * * * * ** ** * * *
5693566 GATTAAAGCCACAAACCTTATCCCTCT-GAAGTTGCAG-TGGGGCAGGTTGAAGAGACA
56 --TTATTTCC-C-TAGC--GTCGCAGTAG-A-TTAAAGCT---G-AAG--G--CAG-CG
* * ** * ** * * ** * * * *
5693623 AATATTATTTTCC-TGAAGTTACAGTGGAATGGTTTGAAGAAG-ATG-A-TGAATCTTGTATCCC
1 AATCTCA-TTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
** ** * * * * * * **
5693684 TAAAGTTACAGTGGAGTAGA-TTAAAGCCA-AT
65 TAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * * *
5693715 AATCTCATTTCTTTAGCGTTGTAGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * * * *
5693780 GGCATCGGAGTAGATGAAAACTGAAGGCATCA
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * ** * *
5693812 AATCTTATTTTCC-TAGCGTCACAGT-----AGATTAAAGCTAAAGGCAGCGAATCTCATTTCCC
1 AATCTCA-TTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * * * * **
5693871 TCGCGTTGCAGTGGAACAGATTCAAGTTGAAGGTAGTA
65 TAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * * *
5693909 AATCTTATTTCCCTAGCGTCGCAGT-----AGGTTAAAGCTGAAGGCAGTGAATCTCATTTCCAT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5693969 GGCGTTGCAGTGGAACAGATTAAAGCTGAAGGTAGCG
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * ** * * *
5694006 AATCTTATTTCGC-TGGGGTCACAGT-----AGATTAAAGCTG-A---A-TGAATCTCATTTCCT
1 AATCTCATTTC-CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * * * *
5694060 TGGCGTTGCAGTGGAACAGATTAAAGTTGAAGGTAACG
65 TAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * **
5694098 AATCTTATTTCC-TGGGGTCGAAGT-----AGATTAAAGCAGAAGGAAGCGAATCTTATTTCTTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5694157 GGCGTTGCAGTGGAACAGATTAAATCTCAAGGCAACG
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * *
5694194 AATATTATTTCCCTGGCGTCGCAGT-----AGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5694254 -GCCGTTGTAGTAAATTAAAGTTGAAGGCAGCG
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * **
5694286 AATCACATTTCTTTGGCATTGGC-GTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC
1 AATCTCATTTCCTTGGCGTT-GCAGT-GGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC
* * * *
5694350 CTGGCGTGGCAGTAGATTAAATCAGAAGGACA-CG
64 CTAGCGTCGCAGTAGATTAAAGCTGAAGG-CAGCG
* * * ** * * * *
5694384 AGTCTTATTCCCTCAGCATTGCAGTGGAACAGATTAAAGCTGAAGCCAGCGGATTTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5694449 GGCATCGCTGTAGATTAAACCTGAAGGTC-GCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGG-CAGCG
* ** * *
5694481 AATCTTATTTCCTTTTCGTTACAGTGGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5694545 GGCGTCGTAGTAGATTAAAACTGAAGGCAGTG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * **
5694577 AATCTTATTTCGATT-GTGTTGTAGTGGAACAGATTAAAGCTGAAGGTAGTAAATCTTATTTCCC
1 AATCTCATTTC-CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * *
5694641 TAGCGTCACAGCAGATTAAAGCTGAAGGCAGCA
65 TAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * **
5694674 AATCTCTTTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAGTAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5694739 GGCATCGTAGTAGATTAAAGCTGAAGGCGGTG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * *
5694771 AATCTTATTTCCTTAGCGTTGCAGTGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* *
5694836 AGAGTCGTAGTAGATTAAA-CTTGAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGC-TGAAGGCAGCG
* * * * * *
5694868 AATCGCATTTCCCTGGTGTTGCAGT-----AGATTAAAGCTGAAGGAAGTGAATCTTA-TTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-C
* * * *
5694927 TGGCATCACAGTTGAACAAATTAAAGCTGAAGGCAGCG
65 TAGCGTCGCAG-T----AGATTAAAGCTGAAGGCAGCG
* * ** * *
5694965 AACCTCATTTCCCTAACG-T-C-GT--AATAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5695024 AAGCGTTGCAGTGGAACAGATTAAACCTGAAGCCAGTG
66 -AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * * *
5695062 AATCTTATTTCCCTGGCGTCGCAGT-----AGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5695122 GGCATTGCAGTGGAACAGATTAACA-CTAAAGG--GTG
66 AGCGTCGCAGT-----AGATTAA-AGCTGAAGGCAGCG
* * * * * * * * * *
5695157 AATATTATATCCCTGGCG-T-C-GTAGTA-AG-CTAAAGTTGAAGGCAGAGAATCTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * ** **
5695217 GGCGTTGCAGTGGAACATATTAAAATTGAAGGCAGTA
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * *
5695254 AATCTTATTTCCTTGGCGTTGCAGTGGAAAAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCA
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCC
* * *
5695318 T-GTCGTCGCAGTAAATTAAAGCTGAAGGTAGCA
65 TAG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * *
5695351 AATCTTATTTCCTTAGCATTGCAGTGGAACAGGTTAAAGCTGAAGGCAGCGAATCTCATCT-CCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5695415 TGCCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAAG-G
66 AG-CGTCGCAGT-----AGATTAAAGCTGAAGGC-AGCG
* * ** * * * * * * * *
5695453 AATCTTATTTCC----C-TGGCACCGCAATAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5695513 GGCGTTTCAGTAGAACAGATTAAAGCTGAAGGCAGCG
66 AGCG--TC-GCAG--TAGATTAAAGCTGAAGGCAGCG
* * * * * * * *
5695550 AATCTTATTTCCCTGCCGTTGCAGTAGAACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5695615 -GACGTCGCAGTAGACTAAAGCTAAAGCCAACG
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * ** * * * *
5695647 ACTCTTATTTCCCCGGCGTTGCAGTGGAACAGATTAAAGCTGAAAGCAACGAAT-TCCATTTCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCC
* * * * *
5695711 TGGCATTGCAGTAGAACAAATTAAAGCTGAATGCAGCA
65 TAGCGTCGCAGTAG-----ATTAAAGCTGAAGGCAGCG
* * * * * * * * *
5695749 AATCTTATTTCCTTGGCATCGCA-T----TAGATGAAAGCTGAAGGTAGCAAATC-CATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5695808 GGCGTTGCAGTTGAACTGATTAAAGTTGAAGGCAGCA
66 AGCGTCGCAG-T--A--GATTAAAGCTGAAGGCAGCG
* ** * * * *
5695845 AATCTTATTTCGC-TGGCG-T-CA---GAGTAGATTAAACCTTAAGGCAGTGAATCTTATTTCCT
1 AATCTCATTTC-CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * ***
5695904 TAGCGTTGCAGTGGAACATATTAAAGCTGAAGGCAATA
65 TAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * *
5695942 AATCTTATTTCCTTGGCATTGTAGTAGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5696007 -GTCATCGCAGTAGATTCAAGCTGAAGGTAGCG
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * ** * *
5696039 AATCTTATTTCGTTGGCGTTGCAGTGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * ** * *
5696104 GGCATTGCAGTGGATCAAATTAAAATTGAAGGTAGCA
66 AGCGTCGCA---G-T-AGATTAAAGCTGAAGGCAGCG
* * * * * * * **
5696141 AATCTTATTTCCTTGGCATCGCA-T----TAGATTAAAGCTGAAGGTAGCAAATCTCATTTCTTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5696201 GGTGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCG
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * * * *
5696238 AATCTTATTTCCCTGTCGTCGCAGT-----TGATTAAAGTTGAAGGCAGCAAATTTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * * * *
5696298 GGAGTTGTAGTAGAACAGATTAAAGCAGAAGGCACCA
66 --AG-CGTCGCAG--TAGATTAAAGCTGAAGGCAGCG
* * * * * * * * *
5696335 AATCTTATTTCCCTGACG-T-C---GCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5696395 AGCATTGCAGTAGAACAGATTAAAGCTGACGACAGCG
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * *
5696432 AAT-TACATTTCCTTGGCATTACAGTGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCT
1 AATCT-CATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * *
5696496 TGGCGTCGTATTAGATTAAAGCTGAAGGCAGCG
65 TAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * *
5696529 AATCTCATTTCCTTGGCGTAGTAGT-G----GA--AAAGCAGAAGGCAGCAAATCTTATTTCTCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5696587 AGCGTCGTAGTAGATTAAAGCTGAAGGCAACA
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* *
5696619 AATCTCATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5696683 GGTGTCGTAGTAGATTAAAACTGAAGGCAGTG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * **
5696715 AATCTTATTTCGATT-GCGTTGTAGTGGAACAAATTAAAGCTGAAGGTAGTAAATCTTATTTCCC
1 AATCTCATTTC-CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
** * * * *
5696779 TAGCGTAACAGCAGATTAAAGCTAAAGGCAACA
65 TAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * **
5696812 AATCTCTTTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAGTAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5696877 GGCATCGTAGTAGATTAAAGCTGAAGGCGGTG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * *
5696909 AATCTTATTTCCTTAGCGTTGCAGTGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5696974 GGAGTCGTAGTAGATTAAA-CTTGAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGC-TGAAGGCAGCG
* * * *
5697006 AATCTCATTTCCCTGGTGTTGCAGT-----AGATTAAAGCTGAAGGAAGCGAATCTTA-TTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-C
* * * *
5697065 TGGCATCACAGTGGAACAAATTAAAGCTGAAGGCAGCG
65 TAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* ** * *
5697103 AATCTCATTTCCCTAACG-T-C-GT--AATAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5697162 AAGCGTTGCAGTGGAACAGATTAAA-CTTGAAGCCAGTG
66 -AGCGTCGCAGT-----AGATTAAAGC-TGAAGGCAGCG
* * * * * * * *
5697200 AATCTTATTTCCCTGGCGTCGCAGT-----AGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * * *
5697260 GGCATTGCAGTGGAACAGATTAACGCTAAAGGCAGTG
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * * *
5697297 AATCTTATATCCCTGGCGTCGCAGT---A-AG-CTAAAGTTGAAGGCAGAGAATCTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * **
5697357 GGCGTTGCAGTGGAACATATTAAAGTTGAAGGCAGTA
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * *
5697394 AATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCA
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCC
* * *
5697458 T-GTCGTCGCAGTAAATTAAAGCTGAAGGTAGCA
65 TAG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * *
5697491 AATCTTATTTCCTTAGCATTGCAGTGGAACAGGTTAAAGCTGAAGGCAGCGAATCTCATCT-CCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5697555 TGCCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAAG-G
66 AG-CGTCGCAGT-----AGATTAAAGCTGAAGGC-AGCG
* * ** * * * * * * * *
5697593 AATCTTATTTCC----C-TGGCACCGCAATAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5697653 GGCGTTTCAGTAGAACAGATTAAAGCTGAAGGCAGCG
66 AGCG--TC-GCAG--TAGATTAAAGCTGAAGGCAGCG
* * * * * * * * *
5697690 AATCTTATTTCCCTGTCGTTGCAGTAGAATAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5697755 -GACGTCGCAGTAGACTAAAGCTAAAGCCAACG
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * ** * *
5697787 ACTCTTATTTCCCCGGCGTTGCAGTGGAACAGATTAAAGCTGAAAGCAGCGAAT-TCTATTTCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCC
* * * * *
5697851 TGGCATTGCAGTGGAACAAATTAAAGCTGAAGGCAGCA
65 TAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * * *
5697889 AATCTTATTTCCTTGGCATCGCA-T----TAGATGAAAGCTGAAGGCAGCAAATCTCATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5697949 GGCGTTGCAGTTGAACTGATTAAAGTTGAAGGCAGCA
66 AGCGTCGCAG-T--A--GATTAAAGCTGAAGGCAGCG
* ** * * * *
5697986 AATCTTATTTCGC-TGGCG-T-CA---GAGTAGATTAAACCTTAAGGCAGTGAATCTTATTTCCT
1 AATCTCATTTC-CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * * * ***
5698045 TAGCATTGCAGTGGAACATATTAAAGCAGAAGGCAATA
65 TAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * *
5698083 AATCTTATTTCCTTGGCATTGTAGTAGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5698148 -GTCATCGCAGTAGATTCAAGCTGAAGGTAGCG
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * ** * *
5698180 AATCTTATTTCGTTGGCGTTGCAGTGGAACAGATTATAGCTGACGGCAGTGAATCCCATTTTCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * ** * ** * *
5698245 GGCATTGTAGTGGATCAAATTAAAATTGAAGGTAGCA
66 AGC---GTCGCAG-T-AGATTAAAGCTGAAGGCAGCG
* * * * * *
5698282 AATCTTATTTTCTTGGCGTCGCA-T----TAGATTAAAGCTGAAGGTAGCAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5698342 -GTCGTTGCAGTTGATTAAAGTTGAA-ACAGCA
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * * * * *
5698373 AATTTTATTTCCTTGGAGTTGTAGTAGAACAGATTAAAGCAGAATGCACCAAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5698438 -GACGTCGCAATAGACTAAAGCTAAAGCCAGCG
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * * ** *
5698470 AATCTTATTTCCTTAGCATTGCAGTAGAGCAGATTAAAGCTGACGATAGCGAAT-TAATTT-CCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * ** * * * *
5698533 TGACATTACAGTGGAACAAATTAAAGCTGAAAGAAGCA
66 AG-CGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* ** * *
5698571 AATCTTATTTCCTTGGCG-T-C-GT--ATTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5698631 GGCGTAGTAGTGGA--AAAGCAGAAGGCAGC-
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * ** * * * *
5698660 ACATCTTATTT-CTCTAGCG-T-C-GT--AGTAGATTAAAGCTGAAAGCAACAAATCTCATTTCC
1 A-ATCTCATTTCCT-TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC
* * * * ***
5698719 CTGGCGTTGCAGTGGAACAGATTAAAGTTGAAGCCAATA
64 CTAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * *
5698758 AATCTTATTTCCCTGGCATCGCAGT-----AGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5698818 AGTGTTGCAGTGGAACAGATTAAAGCTAAAGGTAGCG
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * *
5698855 AATCTTATTTCTCTGCTGGC---GCAGT---A-A-ATTAAAGCTGAAGGAAGTGAATCTTATTTG
1 AATCTCATTTC-CT--TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC
* * *** * * *
5698912 CTTGGCGTTATAGTGGAACAGATTAAAGTTAAAGGCAGCA
63 CCTAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * *
5698952 AATCTTATTTCCCTGGCGTCGCAGT-----AGATTAAAGATGAAGGCAGCGAGTCTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5699012 AGCGTTGTAGTGGAATAGATTAAAGCAGAAGGCAGTG
66 AGCGTCGCA---G--TAGATTAAAGCTGAAGGCAGCG
* * * * * * * **
5699049 AATCTTATTTCCCTGGCGTCGCAGT-----AGGTTAAAGCTGAAGCCAGAGAATCTCATTT-TTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * * *
5699108 TGTAGTCGCAGTGGAACAGATTAAAGCTGACGGTAACA
66 AG-CGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * * *
5699146 AATCTTATTTCCCTAGCGTCGCAGT-----AGATTAAAGCAGGAGGCAACAAAT-TTCATTTCCC
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTT-ATTTCCC
* * * * **
5699205 TAGCATTGTAGTGGAACAGAATAAAGCTGAAGGCAGTA
65 TAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * * * *
5699243 AATATTATTTCCCTAGCGTCGCAGT-----AGATTAAAGCTGAAGGCAACGAATCTCATCTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC--
* * ** * *
5699303 GGTATTGCAG-CGGAACAGATTAAAACTGAAGGCAGCA
64 -CTA--GC-GTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * ** * * * * *
5699340 AACCTTATTTCCCTGGCGTCACAGT-----AGAATAAAGATAAAGCCAGTGAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * *
5699400 GGCGTTGCAGTGGAACAGATTAAAGCTGATGACAGCG
66 AGCGTCGCAGT-----AGATTAAAGCTGAAGGCAGCG
* * * * * *
5699437 AATCTCCTTTCCTTGGCGTTGTAGTGGAACAAATTAAAGCTGAAGGCAACAAATCTTATTTCCTT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * * *
5699502 AACGTCACATTAGATTAAAGCTAAAGGTAGCA
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * *
5699534 AATCTCATTTCCTTAGTGTTGCAGTGGAACAGATTAAAG-TAGGAGGCAACAAATCTTATTTCTC
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCT-GAAGGCAGCGAATCTTATTTCCC
* * *
5699598 TAGCGTCGCAGTAGATTAAAGTTAAAGGCAGCA
65 TAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * * ** *
5699631 AATATCATTTCCCTGGCATTGCAGTGGAACAAATTAAAGTTAAAGGCAGTAAATTTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * * *
5699696 GGCATCGCAGTAGATTAAAGCTGCACGTAGCA
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * *
5699728 AATCTCATTTCCTTGGTGTTGCAGTGGAATAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * *
5699793 GGCATCGCAGTAGATTAAAGCTGAAGGCAGTG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * ** * * *
5699825 AATCTTATTTCATTTCCGTTGCAGTGGAACAGATTAAAGTTGAAGGTAGCGAATTTTATTTCCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* *
5699890 AGCGTTGCAGTAGATTAAAGCTAAAGGCAGCG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * * *
5699922 AATCTCATTTCCATT-GCATTGCAGTGGAAGAAATTAAAGCTGACGGCATCAAATCTTTTTTCCC
1 AATCTCATTTCC-TTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
** ** * *
5699986 TAGCGTCGCTCTAGATTAAATTTAAAGGCATCG
65 TAGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * * *
5700019 AATCTCATTTCCCTGGCGTTGCACTGGAACATATTAAAGCTGAAGGAAG-TAATCTTATTTTCCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
*
5700083 -GACGTCACAGTAGATTAAAGCTGAAGGCAGCG
66 AG-CGTCGCAGTAGATTAAAGCTGAAGGCAGCG
* * * * *
5700115 AATCTCATTTTCTTGGCGTTCCAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTACCT
1 AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
* * * * *
5700180 GGCGTCGCAGTAGATTAAAGTTGAAAGCGGTG
66 AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
*
5700212 AATCTTATTTC
1 AATCTCATTTC
5700223 TCTGGCTTCA
Statistics
Matches: 6076, Mismatches: 1374, Indels: 828
0.73 0.17 0.10
Matches are distributed among these distances:
86 2 0.00
87 3 0.00
88 21 0.00
89 5 0.00
90 156 0.03
91 61 0.01
92 312 0.05
93 15 0.00
94 46 0.01
95 140 0.02
96 614 0.10
97 3875 0.64
98 147 0.02
99 28 0.00
100 47 0.01
101 54 0.01
102 482 0.08
103 13 0.00
104 2 0.00
105 3 0.00
106 2 0.00
107 10 0.00
108 3 0.00
109 3 0.00
110 2 0.00
111 3 0.00
112 1 0.00
113 1 0.00
114 1 0.00
115 2 0.00
116 8 0.00
117 13 0.00
119 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (97 bp):
AATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT
AGCGTCGCAGTAGATTAAAGCTGAAGGCAGCG
Found at i:5692859 original size:46 final size:46
Alignment explanation
Indices: 5692291--5693493 Score: 431
Period size: 46 Copynumber: 25.2 Consensus size: 46
5692281 TTCAGTGGAA
* * *
5692291 TAGATTAAAGCTAAAGGCAACGAATCTTATTTCCCTGACGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * ** *
5692337 TAGATTAAAGCTGAAGGCACCAAATCTCATTTCCATGATGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5692383 TGGAACAGGTTAAAGCTAAAGCCAGCGAATCTTATTTCCTTGG-GATCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG-TCGCAG
* * * * * * * *
5692434 TAGATTAAACCTGAAGGTAGTGAATCTCATTTCCTTGGCTTGTAGTGGAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC--GT--CGCAG
* * * * *
5692484 TAAATTAAAGCTGAATGCAGCAAATCTTATTTCCCTAGCGTCGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5692530 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTTCTTGGCATTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5692576 TGGAACAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTAGTGTCGCAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5692627 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5692673 TGGAACAAATTAAAGCTGAAGGCAGTGAATCTTATTTTCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * **
5692724 TAGATTAAAGCTAAAGGCAGCGAATCTCATTTCCTTGGCGTTACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5692770 TGGAACAGATTAAAGCTGGAGCCAACGAATCTTATTTCTCTAGCGTCACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *
5692821 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCATCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** * * * ** *** **
5692867 TGGGATGGTTTGAGGTTATCATGGCA--G-ATCTTATCTCTATTAAGTTTCAG
1 T---A-GATTAAAGCTGA--A-GGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** * * * * * * * ** *
5692917 TGGAGCAGA-TTAAAGCCA-CAAACCTTA-TCCCTCTGAAGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCAG
**** * * * * * *
5692961 T-GGGGCAGGTTGAA-G-AGACAAATCTTATTTTCCTAGCATCGCAG
1 TAGATTAAAGCTGAAGGCAG-CGAATCTTATTTCCCTGGCGTCGCAG
* ** * ** ** *
5693005 TGGA--ATGGTTTGAAGAAG-ATGACGAATCTTATAACCCTGAAGTTGCAG
1 TAGATTAAAG-CTGAAG--GCA-G-CGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * ** ** * * *
5693053 TGGAGT--AGATTAAAGCCGATAATCTTATTTCTTTTGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *
5693097 TGGAACAGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5693148 TAGATTAAAGCTAAAGGCAGCGAATCTTA-TTCCCTTGGTGTTGTAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC-TGGCGTCGCA---G
* * *
5693197 AATAGATTAAAGCTGAAGGCAGCAAATCTTATTTTCCTGGCGACGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** * * * * *
5693245 TAGATTAAAGCTGAAGGCAACGAATCTCCTTTTCTTGGTGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5693291 TGAAACAGATTAATGTTGAGGGCAGCAAATCTTATTTACTTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5693342 TAGATTAAAGTTGAAGGCAGCGAATCTCATTTCCTTGGCGTTGTAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* * *
5693391 AATAGATTAAAGCTAAAGGCAGCGAATCTGATTTCTCTGGCGTCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *
5693439 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTAGCGTCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
5693485 TAGATTAAA
1 TAGATTAAA
5693494 TCAGAAGGAA
Statistics
Matches: 856, Mismatches: 228, Indels: 146
0.70 0.19 0.12
Matches are distributed among these distances:
42 4 0.00
43 6 0.01
44 57 0.07
45 12 0.01
46 389 0.45
47 5 0.01
48 29 0.03
49 7 0.01
50 55 0.06
51 283 0.33
52 5 0.01
53 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.29
Consensus pattern (46 bp):
TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
Found at i:5693838 original size:46 final size:46
Alignment explanation
Indices: 5693744--5693869 Score: 137
Period size: 46 Copynumber: 2.7 Consensus size: 46
5693734 TGTAGTGGAA
* **
5693744 TAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGGCATCGGAG
1 TAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTAGCATCACAG
* * * *
5693790 TAGATGAAAACTGAAGGCATCAAATCTTATTTTCC-TAGCGTCACAG
1 TAGATTAAAGCTGAAGGCAACAAATCTTA-TTTCCTTAGCATCACAG
* * * *
5693836 TAGATTAAAGCTAAAGGCAGCGAATCTCATTTCC
1 TAGATTAAAGCTGAAGGCAACAAATCTTATTTCC
5693870 CTCGCGTTGC
Statistics
Matches: 66, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
45 5 0.08
46 56 0.85
47 5 0.08
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (46 bp):
TAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTAGCATCACAG
Found at i:5693965 original size:46 final size:46
Alignment explanation
Indices: 5693744--5700767 Score: 2927
Period size: 51 Copynumber: 145.0 Consensus size: 46
5693734 TGTAGTGGAA
* * * * *
5693744 TAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGGCATCGGAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5693790 TAGATGAAAACTGAAGGCATCAAATCTTATTTTCCTAGCGTCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5693836 TAGATTAAAGCTAAAGGCAGCGAATCTCATTTCCCTCGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** *
5693882 TGGAACAGATTCAAGTTGAAGGTAGTAAATCTTATTTCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5693933 TAGGTTAAAGCTGAAGGCAGTGAATCTCATTTCCATGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5693979 TGGAACAGATTAAAGCTGAAGGTAGCGAATCTTATTTCGCTGGGGTCACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5694030 TAGATTAAAGCTG-A---A-TGAATCTCATTTCCTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5694071 TGGAACAGATTAAAGTTGAAGGTAACGAATCTTATTT-CCTGGGGTCGAAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** *
5694121 TAGATTAAAGCAGAAGGAAGCGAATCTTATTTCTTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5694167 TGGAACAGATTAAATCTCAAGGCAACGAATATTATTTCCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5694218 TAGATTAAAGCTAAAGGCAGCAAATCTTATTTCCCTGCCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * **
5694264 TAAATTAAAGTTGAAGGCAGCGAATCACATTTCTTTGGCATTGGCGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAAT--C--TTATTT--CCCTGGCGTCGCAG
*
5694316 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTGGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5694362 TAGATTAAATCAGAAGGACA-CGAGTCTTA-TTCCCTCAGCATTGCAG
1 TAGATTAAAGCTGAAGG-CAGCGAATCTTATTTCCCT-GGCGTCGCAG
* * * * *
5694408 TGGAACAGATTAAAGCTGAAGCCAGCGGATTTTATTTCCCTGGCATCGCTG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** **
5694459 TAGATTAAACCTGAAGGTC-GCGAATCTTATTTCCTTTTCGTTACAG
1 TAGATTAAAGCTGAAGG-CAGCGAATCTTATTTCCCTGGCGTCGCAG
* *
5694505 TGGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCTGGCGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * * *
5694555 TAGATTAAAACTGAAGGCAGTGAATCTTATTTCGATTGTGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** * *
5694601 TGGAACAGATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTCACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5694652 CAGATTAAAGCTGAAGGCAGCAAATCTCT-TTTCCCTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * ** * *
5694698 TGGAACAGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGCATCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5694749 TAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5694795 TGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTAGAGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** * *
5694846 TAGATTAAA-CTTGAAGGCAGCGAATCGCATTTCCCTGGTGTTGCAG
1 TAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5694892 TAGATTAAAGCTGAAGGAAGTGAATCTTA-TTCCTTTGGCATCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCAG
* * * ** * *
5694938 TTGAACAAATTAAAGCTGAAGGCAGCGAACCTCATTTCCCTAACGTCGTAA
1 -T----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5694989 TAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GGCGTCGCAG
* * *
5695035 TGGAACAGATTAAACCTGAAGCCAGTGAATCTTATTTCCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5695086 TAGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5695132 TGGAACAGATTAACA-CTAAAGG--GTGAATATTATATCCCTGGCGTCGTAG
1 T-----AGATTAA-AGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5695181 TA-AGCTAAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAG
1 TAGA-TTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** ** * *
5695227 TGGAACATATTAAAATTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5695278 TGGAAAAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCGTCGCAG
* * * * * * *
5695329 TAAATTAAAGCTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5695375 TGGAACAGGTTAAAGCTGAAGGCAGCGAATCTCATCTCCTTGCCGTTGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** *
5695426 TGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAA
1 T-----AGATTAAAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5695477 TAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG--TC-GCAG
* * *
5695526 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGCCGTTGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5695574 TAGAACAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCTGACGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5695625 TAGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5695671 TGGAACAGATTAAAGCTGAAAGCAACGAAT-TCCATTTCCTTGGCATTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * * * *
5695722 TAGAACAAATTAAAGCTGAATGCAGCAAATCTTATTTCCTTGGCATCGCAT
1 TAG-----ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5695773 TAGATGAAAGCTGAAGGTAGCAAATC-CATTTCCTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5695818 TTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGCTGGCGTCAG-AG
1 -T--A--GATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTC-GCAG
* * * * * *
5695869 TAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* *** * * *
5695915 TGGAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGGCATTGTAGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC---GTCGCAG
* * *
5695969 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** *
5696017 TAGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * * *
5696063 TGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTTGGCATTGCAGTGG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* ** * * * * *
5696117 ATCAAATTAAAATTGAAGGTAGCAAATCTTATTTCCTTGGCATCGCAT
1 -T-AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * *
5696165 TAGATTAAAGCTGAAGGTAGCAAATCTCATTTCTTTGGTGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
*
5696211 TGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5696262 TTGATTAAAGTTGAAGGCAGCAAATTTTATTTCCTTGGAGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5696308 TAGAACAGATTAAAGCAGAAGGCACCAAATCTTATTTCCCTGACGTCGCAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5696359 TAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * **
5696405 TAGAACAGATTAAAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * * * * * *
5696456 TGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCTTGGCGTCGTAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5696507 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5696553 TGGA--AAAGCAGAAGGCAGCAAATCTTATTTCTCTAGCGTCGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5696597 TAGATTAAAGCTGAAGGCAACAAATCTCATTTCCCTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5696643 TGGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCTGGTGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * *
5696693 TAGATTAAAACTGAAGGCAGTGAATCTTATTTCGATTGCGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * **
5696739 TGGAACAAATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTAACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5696790 CAGATTAAAGCTAAAGGCAACAAATCTCT-TTTCCCTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * ** * *
5696836 TGGAACAGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGCATCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5696887 TAGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5696933 TGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACCTGGAGTCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5696984 TAGATTAAA-CTTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAG
1 TAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5697030 TAGATTAAAGCTGAAGGAAGCGAATCTTA-TTCCTTTGGCATCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-CTGGCGTCGCAG
* * ** * *
5697076 TGGAACAAATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTAACGTCGTAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5697127 TAGATTAAAGCTGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCT-GGCGTCGCAG
* *
5697173 TGGAACAGATTAAA-CTTGAAGCCAGTGAATCTTATTTCCCTGGCGTCGCAG
1 T-----AGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5697224 TAGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5697270 TGGAACAGATTAACGCTAAAGGCAGTGAATCTTATATCCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5697321 TA-AGCTAAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAG
1 TAGA-TTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * *
5697367 TGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5697418 TGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCGTCGCAG
* * * * * * *
5697469 TAAATTAAAGCTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5697515 TGGAACAGGTTAAAGCTGAAGGCAGCGAATCTCATCTCCTTGCCGTTGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** *
5697566 TGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCACCGCAA
1 T-----AGATTAAAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5697617 TAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG--TC-GCAG
* * *
5697666 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTTGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5697714 TAGAATAGAGTAAAGCAGAAGGCAACAAATCTTATTTCCCTGACGTCGCAG
1 TAG-AT----TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5697765 TAGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5697811 TGGAACAGATTAAAGCTGAAAGCAGCGAAT-TCTATTTCCTTGGCATTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTCGCAG
* * * * *
5697862 TGGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATCGCAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5697913 TAGATGAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5697959 TTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGCTGGCGTCAG-AG
1 -T--A--GATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTC-GCAG
* * * * * * *
5698010 TAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *** * * *
5698056 TGGAACATATTAAAGCAGAAGGCAATAAATCTTATTTCCTTGGCATTGTAGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC---GTCGCAG
* * * *
5698110 AACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGTCATCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** *
5698158 TAGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * * * **
5698204 TGGAACAGATTATAGCTGACGGCAGTGAATCCCATTTTCTTGGCATTGTAGTGG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC---GTCGCAG
* ** * * * * *
5698258 ATCAAATTAAAATTGAAGGTAGCAAATCTTATTTTCTTGGCGTCGCAT
1 -T-AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5698306 TAGATTAAAGCTGAAGGTAGCAAATCTTATTTCCCTGTCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * * *
5698352 TTGATTAAAGTTGAA-ACAGCAAATTTTATTTCCTTGGAGTTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5698397 TAGAACAGATTAAAGCAGAATGCACCAAATCTTATTTCCCTGACGTCGCAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5698448 TAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** * * * * **
5698494 TAGAGCAGATTAAAGCTGACGATAGCGAAT-TAATTTCCTTGACATTACAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5698544 TGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCTTGGCGTCGTAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5698595 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTAGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5698641 TGGA--AAAGCAGAAGGCAGC-ACATCTTATTTCTCTAGCGTCGTAG
1 TAGATTAAAGCTGAAGGCAGCGA-ATCTTATTTCCCTGGCGTCGCAG
* * * * *
5698685 TAGATTAAAGCTGAAAGCAACAAATCTCATTTCCCTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *** *
5698731 TGGAACAGATTAAAGTTGAAGCCAATAAATCTTATTTCCCTGGCATCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5698782 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTAGTGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5698828 TGGAACAGATTAAAGCTAAAGGTAGCGAATCTTATTTCTCT-GCTGGCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC-GTCGCAG
* * * * * ***
5698879 TAAATTAAAGCTGAAGGAAGTGAATCTTATTTGCTTGGCGTTATAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5698925 TGGAACAGATTAAAGTTAAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5698976 TAGATTAAAGATGAAGGCAGCGAGTCTTATTTCCTTAGCGTTGTAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* *
5699025 AATAGATTAAAGCAGAAGGCAGTGAATCTTATTTCCCTGGCGTCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *** **
5699073 TAGGTTAAAGCTGAAGCCAGAGAATCTCATTTTTTTGTAGTCGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5699119 TGGAACAGATTAAAGCTGACGGTAACAAATCTTATTTCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5699170 TAGATTAAAGCAGGAGGCAACAAAT-TTCATTTCCCTAGCATTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTT-ATTTCCCTGGCGTCGCAG
* ** * *
5699216 TGGAACAGAATAAAGCTGAAGGCAGTAAATATTATTTCCCTAGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * ** *
5699267 TAGATTAAAGCTGAAGGCAACGAATCTCATCTCCTTGGTATTGCAGCGGAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGG-CGT-C-GC--AG
* * * * *
5699318 CAGATTAAAACTGAAGGCAGCAAACCTTATTTCCCTGGCGTCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5699364 TAGAATAAAGATAAAGCCAGTGAATCTTATTTCCCTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * *
5699410 TGGAACAGATTAAAGCTGATGACAGCGAATCTCCTTTCCTTGGCGTTGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * ** * *
5699461 TGGAACAAATTAAAGCTGAAGGCAACAAATCTTATTTCCTTAACGTCACAT
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5699512 TAGATTAAAGCTAAAGGTAGCAAATCTCATTTCCTTAGTGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5699558 TGGAACAGATTAAAG-TAGGAGGCAACAAATCTTATTTCTCTAGCGTCGCAG
1 T-----AGATTAAAGCT-GAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5699609 TAGATTAAAGTTAAAGGCAGCAAATATCATTTCCCTGGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * ** * *
5699655 TGGAACAAATTAAAGTTAAAGGCAGTAAATTTTATTTCCCTGGCATCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * * *
5699706 TAGATTAAAGCTGCACGTAGCAAATCTCATTTCCTTGGTGTTGCAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* *
5699755 AATAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTGGCATCGCAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** ** *
5699803 TAGATTAAAGCTGAAGGCAGTGAATCTTATTTCATTTCCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5699849 TGGAACAGATTAAAGTTGAAGGTAGCGAATTTTATTTCCCTAGCGTTGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * *
5699900 TAGATTAAAGCTAAAGGCAGCGAATCTCATTTCCATTGCATTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * **
5699946 TGGAAGAAATTAAAGCTGACGGCATCAAATCTTTTTTCCCTAGCGTCGCTC
1 T---AG--ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
** * * * *
5699997 TAGATTAAATTTAAAGGCATCGAATCTCATTTCCCTGGCGTTGCACTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCA---G
* * * * * * *
5700046 AACATATTAAAGCTGAAGGAAG-TAATCTTATTTTCCTGACGTCACAG
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5700093 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTTCTTGGCGTTC-CAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG-TCGCAG
* * *
5700139 TGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTACCTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * *
5700190 TAGATTAAAGTTGAAAGCGGTGAATCTTATTTCTCTGGCTTCACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * *
5700236 TAGATTAAAGCTGAAGGCAGTGAATCTCATTTCGTTGGCATTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* ** *
5700282 TGGAACAGATTAAAGCTGAAGGAAGCGAATCTTATTTCATTGACGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * **** *
5700333 TAGATTAAAGCTAAAGGAAACGAATCTTATTTTCTTAATTTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * * * **
5700379 TAGAACAAATTAAAGCTGAAGCCAACAAATATTATTTCTCTGTCGTCTTAG
1 TAG-----ATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** * * * *
5700430 TAGATTAAAACTAAAGGCAGCGAATCACATTTCCTTGGCATTGTAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * *
5700476 TGGAACAGATTAACA-CTGAAGGCAGCGAATCTTATTTCCCTAGCATTGCAG
1 T-----AGATTAA-AGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5700527 TAGACTAAAGCTGAAGGCGGCGAATGTTATTTCCTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * *
5700573 TGGAACAGATTAAAGCTGAAGGCAGTGAATCTTATTTCCCTTGCATCGTAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * * * *
5700624 TAAATTAAAGTTGAAGGCAGTGAATCTTACTTT--CTGGGCAAT-ACAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTA-TTTCCCT-GGC-GTCGCAG
* * *
5700670 TGGAACAGTTTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCGTCGCAG
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
* * ** *
5700721 TAGATTAAAGCTGAAGACAGCAAATCTTATTTCTTTGGCGTTGCAG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
5700767 T
1 T
5700768 GGGATGGTTT
Statistics
Matches: 5287, Mismatches: 1278, Indels: 826
0.72 0.17 0.11
Matches are distributed among these distances:
41 20 0.00
42 1 0.00
43 3 0.00
44 80 0.02
45 142 0.03
46 2282 0.43
47 30 0.01
48 34 0.01
49 34 0.01
50 174 0.03
51 2403 0.45
52 68 0.01
54 14 0.00
55 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (46 bp):
TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTCGCAG
Found at i:5694749 original size:148 final size:148
Alignment explanation
Indices: 5693737--5700761 Score: 3150
Period size: 148 Copynumber: 48.3 Consensus size: 148
5693727 TTAGCGTTGT
* * * * * * * *
5693737 AGTGGAATAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGGCATC-GGAGTAGATGAAAAC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * ** *
5693801 TGAAGGCATCAAATCTTATTTTCCTAGCGTCACAGT----AGATTAAAGCTAAAGGCAGCGAATC
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCGAATC
* * *
5693862 TCATTTCCCTCGCGTTGC
131 TTATTTCCCTGGCGTCGC
* * * ** * * * *
5693880 AGTGGAACAGATTCAAGTTGAAGGTAGTAAATCTTATTTCCCTAGCGTC-GCAGTAGGTTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * *
5693944 TGAAGGCAGTGAATCTCATTTCCATGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGTAGCGAAT
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAAT
* * *
5694009 CTTATTTCGCTGGGGTCAC
130 CTTATTTCCCTGGCGTCGC
* * * *
5694028 AGT-----AGATTAAAGCTG-A---A-TGAATCTCATTTCCTTGGCGTTGCAGTGGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * * ** * * * *
5694083 AAGTTGAAGGTAACGAATCTTATTT-CCTGGGGTCGAAGT----AGATTAAAGCAGAAGGAAGCG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
** *
5694143 AATCTTATTTCTTTGGCGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* * * * * *
5694165 AGTGGAACAGATTAAATCTCAAGGCAACGAATATTATTTCCCTGGCGTC-GCAGTAGATTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * *
5694229 TAAAGGCAGCAAATCTTATTTCCCTGCCGTTGTAGT--A-A-ATTAAAGTTGAAGGCAGCGAATC
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCGAATC
** ** * *
5694290 ACATTTCTTTGGCATTGGC
131 TTATTTCCCTGGC-GTCGC
* ** * * * *
5694309 -GTCGCAGTAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT-GGCAGTAGATTAAAT
1 AGT-GGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAG
* * * *
5694372 CAGAAGGACA-CGAGTCTTA-TTCCCTCAGCATTGCAGTGGAACAGATTAAAGCTGAAGCCAGCG
65 CTGAAGG-CAGCGAATCTTATTTCCCT-GGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCG
* * *
5694435 GATTTTATTTCCCTGGCATCGC
127 AATCTTATTTCCCTGGCGTCGC
* * ** * *
5694457 --T-G--TAGATTAAACCTGAAGGTC-GCGAATCTTATTTCCTTTTCGTTACAGTGGAACAGATT
1 AGTGGAACAGATTAAAGCTGAAGG-CAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATT
* * ** * *
5694516 AAAGCTGAA-GCAGTGAATCTTATTTCCCTGGC-GT-C-GT-AGTAGATTAAAACTGAAGGCAGT
61 AAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGC
** * * * *
5694576 GAATCTTATTTCGATTGTGTTGT
126 GAATCTTATTTCCCTGGCGTCGC
* ** * *
5694599 AGTGGAACAGATTAAAGCTGAAGGTAGTAAATCTTATTTCCCTAGCGTCA-CAGCAGATTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * **
5694663 TGAAGGCAGCAAATCTCT-TTTCCCTGGCATTGCAGTGGAACAGATTAAAGCTGAATGTAGTAAA
66 TGAAGGCAGCGAATCT-TATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAA
* *
5694727 TCTTATTTCCCTGGCATCGT
129 TCTTATTTCCCTGGCGTCGC
* * * * *
5694747 AGT-----AGATTAAAGCTGAAGGCGGTGAATCTTATTTCCTTAGCGTTGCAGTGGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * * * **
5694807 AAGCTAAAGGCAGCGAATCTTATTTACCTAG-AGT-C-GT-AGTAGATTAAA-CTTGAAGGCAGC
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGC-TGAAGGCAGC
** * *
5694867 GAATCGCATTTCCCTGGTGTTGC
126 GAATCTTATTTCCCTGGCGTCGC
* * * *
5694890 AGT-----AGATTAAAGCTGAAGGAAGTGAATCTTA-TTCCTTTGGCATCA-CAGTTGAACAAAT
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-TTGGCGTCAGCA---G--CAGAT
* * ** * * *
5694948 TAAAGCTGAAGGCAGCGAACCTCATTTCCCTAAC-GT-C-GT-AATAGATTAAAGCTGAAGGCAT
60 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAG
* *
5695009 CGAATCTTATTT-CCTAAGCGTTGC
125 CGAATCTTATTTCCCT-GGCGTCGC
* * * * * *
5695033 AGTGGAACAGATTAAACCTGAAGCCAGTGAATCTTATTTCCCTGGCGTC-GCAGTAGGTTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * *
5695097 TGAATGCAGCGAATCTCATTTTCTTGGCATTGCAGTGGAACAGATTAACA-CTAAAGG--GTGAA
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAA-AGCTGAAGGCAGCGAA
* * *
5695159 TATTATATCCCTGGCGTCGT
129 TCTTATTTCCCTGGCGTCGC
* * * * * *
5695179 AGT---A-AG-CTAAAGTTGAAGGCAGAGAATCTTATTTCCTTGGCGTTGCAGTGGAACATATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
** ** * * * * *
5695239 AAATTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAGTGGAAAAGATTAAAACTGAAGGTAGC
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGC
* *
5695304 GAA-CTTTATTTCCATGTCGTCGC
126 GAATC-TTATTTCCCTGGCGTCGC
* * * * * * *
5695327 AGT---A-A-ATTAAAGCTGAAGGTAGCAAATCTTATTTCCTTAGCATTGCAGTGGAACAGGTTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGC-GT-CA--GCAGCAGATTA
* * * * * *
5695387 AAGCTGAAGGCAGCGAATCTCATCTCCTTGCCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAAG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGC-AG
*
5695452 -GAATCTTATTTCCCTGGC-AC-C
125 CGAATCTTATTTCCCTGGCGTCGC
* * * * * * * *
5695473 ---GCAATAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG--TCAGCAG--CAGATTA
* * * * *
5695535 AAGCTGAAGGCAGCGAATCTTATTTCCCTGCCGTTGCAGTAGAACAGAGTAAAGCAGAAGGCAAC
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGC
* *
5695600 AAATCTTATTTCCCTGACGTCGC
126 GAATCTTATTTCCCTGGCGTCGC
* * * * * ** * *
5695623 AGT-----AGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGTTGCAGTGGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * * * * *
5695683 AAGCTGAAAGCAACGAAT-TCCATTTCCTTGGCATTGCAGTAGAACAAATTAAAGCTGAATGCAG
62 AAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAG
* * *
5695747 CAAATCTTATTTCCTTGGCATCGC
125 CGAATCTTATTTCCCTGGCGTCGC
* * * * * * * *
5695771 A-T----TAGATGAAAGCTGAAGGTAGCAAATC-CATTTCCTTGGCGTTGCAGTTGAACTGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CAG--CAGCAGATTA
* * * * ** * * *
5695830 AAGTTGAAGGCAGCAAATCTTATTTCGCTGGC-GT-CA--GAGTAGATTAAACCTTAAGGCAGTG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
* * *
5695891 AATCTTATTTCCTTAGCGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* *** *
5695913 AGTGGAACATATTAAAGCTGAAGGCAATAAATCTTATTTCCTTGGCATTGT-AGTAGAACAGATT
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGC---GTCAGCAG--CAGATT
* * * *
5695977 AAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCATCGCAGT----AGATTCAAGCTGAAGGTAGC
61 AAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGC
** *
5696038 GAATCTTATTTCGTTGGCGTTGC
126 GAATCTTATTTCCCTGGCGTCGC
* * ** * * * * *
5696061 AGTGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTTGGCATTGCAGTGGATCAAATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGC-GT-CA--GCAGCAGATTA
** * * * * * * *
5696126 AAATTGAAGGTAGCAAATCTTATTTCCTTGGCATCGCA-T---TAGATTAAAGCTGAAGGTAGCA
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
* ** * *
5696187 AATCTCATTTCTTTGGTGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* * ** *
5696209 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTC-GCAGTTGATTAAAGT
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * * *
5696273 TGAAGGCAGCAAATTTTATTTCCTTGG-AGTTGTAGTAGAACAGATTAAAGCAGAAGGCACCAAA
66 TGAAGGCAGCGAATCTTATTTCCCTGGCA-TTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAA
*
5696337 TCTTATTTCCCTGACGTCGC
129 TCTTATTTCCCTGGCGTCGC
* * * * * * *
5696357 -----AATAGACTAAAGCTAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAGTAGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGC-GT-CAGCAG--CAGATTA
* * * * * * * *
5696417 AAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACAGTGGAACAAATTAAAGCTGAAAGAAG
62 AAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAG
* *
5696481 CAAATCTTATTTCCTTGGCGT--C
125 CGAATCTTATTTCCCTGGCGTCGC
** * * **
5696503 -GT--ATTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGT-AGTAGTGGA--AAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * ** * *
5696562 AGAAGGCAGCAAATCTTATTTCTCTAGC-GT-C-GT-AGTAGATTAAAGCTGAAGGCAACAAATC
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCGAATC
* *
5696623 TCATTTCCCTGGCGTTGC
131 TTATTTCCCTGGCGTCGC
* * * * * *
5696641 AGTGGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCTGGTGTC-GTAGTAGATTAAAAC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* ** * * * * * **
5696704 TGAAGGCAGTGAATCTTATTTCGATTGCGTTGTAGTGGAACAAATTAAAGCTGAAGGTAGTAAAT
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAAT
* **
5696769 CTTATTTCCCTAGCGTAAC
130 CTTATTTCCCTGGCGTCGC
* * * * * * *
5696788 A---G--CAGATTAAAGCTAAAGGCAACAAATCTCT-TTTCCCTGGCATTGCAGTGGAACAGATT
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCTTGGC-GT-CA--GCAGCAGATT
* * ** ** * *
5696847 AAAGCTGAATGTAGTAAATCTTATTTCCCTGGCA-T-C-GT-AGTAGATTAAAGCTGAAGGCGGT
61 AAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGC
* * *
5696908 GAATCTTATTTCCTTAGCGTTGC
126 GAATCTTATTTCCCTGGCGTCGC
* * * *
5696931 AGTGGAACAGATTAAAGCTAAAGGCAGCGAATCTTATTTACC-TGGAGTC-GTAGTAGATTAAA-
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTT-CCTTGGCGTCAGCAGCAGATTAAAG
* ** *
5696993 CTTGAAGGCAGCGAATCTCATTTCCCTGGTGTTGCAGT----AGATTAAAGCTGAAGGAAGCGAA
65 C-TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCGAA
* * *
5697054 TCTTA-TTCCTTTGGCATCAC
129 TCTTATTTCC-CTGGCGTCGC
* * * ** * **
5697074 AGTGGAACAAATTAAAGCTGAAGGCAGCGAATCTCATTTCCCTAACGTC-GTAATAGATTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * *
5697138 TGAAGGCATCGAATCTTATTT-CCTAAGCGTTGCAGTGGAACAGATTAAA-CTTGAAGCCAGTGA
66 TGAAGGCAGCGAATCTTATTTCCCT-GGCATTGCAGT-GAACAGATTAAAGC-TGAAGGCAGCGA
5697201 ATCTTATTTCCCTGGCGTCGC
128 ATCTTATTTCCCTGGCGTCGC
* * * * * * *
5697222 AGT-----AGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGCAGTGGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGC-GT-CA--GCAGCAGATTA
* * * * * * * * *
5697282 ACGCTAAAGGCAGTGAATCTTATATCCCTGGCGTCGCAGT--A-AG-CTAAAGTTGAAGGCAGAG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
* *
5697343 AATCTTATTTCCTTGGCGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* * ** * *
5697365 AGTGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * * * * * *
5697430 AAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCGCAGT--A-A-ATTAAAGCTGAAGGTAGC
62 AAGCTGAAGGCAGCGAATC-TTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGC
* * * * *
5697490 AAATCTTATTTCCTTAGCATTGC
126 GAATCTTATTTCCCTGGCGTCGC
* * * * * * *
5697513 AGTGGAACAGGTTAAAGCTGAAGGCAGCGAATCTCATCTCCTTGCCGTTGTAGTGGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * * * * * * *
5697578 AAGCTGAAGGCAAG-GAATCTTATTTCCCTGGCA---CCG-CAATAGACTAAAGGTAAAGGCGGT
62 AAGCTGAAGGC-AGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGC
* **
5697638 GAATCTTATTTCCTTGGCGTTTC
126 GAATCTTATTTCCCTGGCGTCGC
* * * * * *
5697661 AGTAGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTTGCAGTAGAATAGAGTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CAGCAG--CAGATTA
* * * * * * * * * *
5697726 AAGCAGAAGGCAACAAATCTTATTTCCCTGACGTCGCAGT----AGACTAAAGCTAAAGCCAACG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
* * *
5697787 ACTCTTATTTCCCCGGCGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* * * * *
5697809 AGTGGAACAGATTAAAGCTGAAAGCAGCGAAT-TCTATTTCCTTGGCATTGCAGTGGAACAAATT
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCTTGGC-GT-CA--GCAGCAGATT
* * * * *
5697873 AAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCATCGCA-T---TAGATGAAAGCTGAAGGCAGC
61 AAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGC
* * * *
5697934 AAATCTCATTTCCTTGGCGTTGC
126 GAATCTTATTTCCCTGGCGTCGC
* * * * * *
5697957 AGTTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGC-TGGCGTCAG-AGTAGATTAAAC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC-CTTGGCGTCAGCAGCAGATTAAAG
* * * * * * ***
5698020 CTTAAGGCAGTGAATCTTATTTCCTTAGCATTGCAGTGGAACATATTAAAGCAGAAGGCAATAAA
65 CTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAA
* * * *
5698085 TCTTATTTCCTTGGCATTGT
129 TCTTATTTCCCTGGCGTCGC
* * * * *
5698105 AGTAGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTT-CTCTGTCATC-GCAGTAGATTCAAG
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCT-TGGCGTCAGCAGCAGATTAAAG
* ** * * * *
5698168 CTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAGTGGAACAGATTATAGCTGACGGCAGTGAA
65 CTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAA
** * * * * *
5698233 TCCCATTTTCTTGGCATTGT
129 TCTTATTTCCCTGGCGTCGC
* * ** * * * **
5698253 AGTGGATCAAATTAAAATTGAAGGTAGCAAATCTTATTTTCTTGGCGTC-GCATTAGATTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * * * * *
5698317 TGAAGGTAGCAAATCTTATTTCCCTGTCGTTGCAGT----TGATTAAAGTTGAA-ACAGCAAATT
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCGAATC
* * * *
5698377 TTATTTCCTTGGAGTTGT
131 TTATTTCCCTGGCGTCGC
* * * * * * * ** *
5698395 AGTAGAACAGATTAAAGCAGAATGCACCAAATCTTATTTCCCTGACGTC-GCAATAGACTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * * **
5698459 TAAAGCCAGCGAATCTTATTTCCTTAGCATTGCAGTAGAGCAGATTAAAGCTGACGATAGCGAAT
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAAT
* * * * **
5698524 -TAATTTCCTTGACATTAC
130 CTTATTTCCCTGGCGTCGC
* * * * * **
5698542 AGTGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCTTGGCGTC-GTATTAGATTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * *
5698606 TGAAGGCAGCGAATCTCATTTCCTTGGCGTAGTAGTG----GA--AAAGCAGAAGGCAGC-ACAT
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCGA-AT
* * *
5698664 CTTATTTCTCTAGCGTCGT
130 CTTATTTCCCTGGCGTCGC
* * * * * * *
5698683 AGT-----AGATTAAAGCTGAAAGCAACAAATCTCATTTCCCTGGCGTTGCAGTGGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * *** *
5698743 AAGTTGAAGCCAATAAATCTTATTTCCCTGGCATCGCAGT----AGATTAAAGCTGAAGGCAGCG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
* * * * *
5698804 AATCTCATTTCCTTAGTGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* * *
5698826 AGTGGAACAGATTAAAGCTAAAGGTAGCGAATCTTATTTCTCTGCTGGCG-CAGTA--A-ATTAA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTC-CT--TGGCGTCAGCAGCAGATTAA
* * * * * ** * * *
5698887 AGCTGAAGGAAGTGAATCTTATTTGCTTGGCGTTATAGTGGAACAGATTAAAGTTAAAGGCAGCA
63 AGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCG
5698952 AATCTTATTTCCCTGGCGTCGC
127 AATCTTATTTCCCTGGCGTCGC
* * * * * **
5698974 AGT-----AGATTAAAGATGAAGGCAGCGAGTCTTATTTCCTTAGCGTTGTAGTGGAATAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * * * * * *
5699034 AAGCAGAAGGCAGTGAATCTTATTTCCCTGGCGTCGCAGT----AGGTTAAAGCTGAAGCCAGAG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
* *** **
5699095 AATCTCATTTTTTTGTAGTCGC
127 AATCTTATTTCCCTGGCGTCGC
* * * * * * *
5699117 AGTGGAACAGATTAAAGCTGACGGTAACAAATCTTATTTCCCTAGCGTC-GCAGTAGATTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * * * **
5699181 AGGAGGCAACAAAT-TTCATTTCCCTAGCATTGTAGTGGAACAGAATAAAGCTGAAGGCAGTAAA
66 TGAAGGCAGCGAATCTT-ATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAA
* *
5699245 TATTATTTCCCTAGCGTCGC
129 TCTTATTTCCCTGGCGTCGC
* * * ** *
5699265 AGT-----AGATTAAAGCTGAAGGCAACGAATCTCATCTCCTTGGTATTGCAGCGGAACAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGG-CGT-CAGC--AGCAGATTA
* * * * ** * * * * *
5699325 AAACTGAAGGCAGCAAACCTTATTTCCCTGGCGTCACAGT----AGAATAAAGATAAAGCCAGTG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
*
5699386 AATCTTATTTCCCTGGCGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* * ** * * * *
5699408 AGTGGAACAGATTAAAGCTGATGACAGCGAATCTCCTTTCCTTGGCGTTGTAGTGGAACAAATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * * ** * * ** * * *
5699473 AAGCTGAAGGCAACAAATCTTATTTCCTTAAC-GT-CA--CATTAGATTAAAGCTAAAGGTAGCA
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
* * * * *
5699534 AATCTCATTTCCTTAGTGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* * * * *
5699556 AGTGGAACAGATTAAAG-TAGGAGGCAACAAATCTTATTT-CTCTAGCGTC-GCAGTAGATTAAA
1 AGTGGAACAGATTAAAGCT-GAAGGCAGCGAATCTTATTTCCT-TGGCGTCAGCAGCAGATTAAA
* * * * * * * * **
5699618 GTTAAAGGCAGCAAATATCATTTCCCTGGCATTGCAGTGGAACAAATTAAAGTTAAAGGCAGTAA
64 GCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGA
* *
5699683 ATTTTATTTCCCTGGCATCGC
128 ATCTTATTTCCCTGGCGTCGC
* * * * * * * **
5699704 AGT-----AGATTAAAGCTGCACGTAGCAAATCTCATTTCCTTGGTGTTGCAGTGGAATAGATTA
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATTA
* * *
5699764 AAGTTGAAGGCAGCGAATCTTATTTCCCTGGCATCGCAGT----AGATTAAAGCTGAAGGCAGTG
62 AAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCG
** ** *
5699825 AATCTTATTTCATTTCCGTTGC
127 AATCTTATTTCCCTGGCGTCGC
* * * * * * *
5699847 AGTGGAACAGATTAAAGTTGAAGGTAGCGAATTTTATTTCCCTAGCGT-TGCAGTAGATTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * * * * *
5699911 TAAAGGCAGCGAATCTCATTTCCATTGCATTGCAGTGGAAGAAATTAAAGCTGACGGCATCAAAT
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAAT
* *
5699976 CTTTTTTCCCTAGCGTCGC
130 CTTATTTCCCTGGCGTCGC
** * * * * * * *
5699995 --T----CTAGATTAAATTTAAAGGCATCGAATCTCATTTCCCTGGCGTTGCACTGGAACATATT
1 AGTGGAAC-AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCG-T-CA--GCAGCAGATT
* * * * * **
5700054 AAAGCTGAAGGAAG-TAATCTTATTTTCCTGACGTCACAGT----AGATTAAAGCTGAAGGCAGC
61 AAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGC
* * *
5700114 GAATCTCATTTTCTTGGCGTTC-C
126 GAATCTTATTTCCCTGGCG-TCGC
* * *
5700137 AGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTACC-TGGCGTC-GCAGTAGATTAAAG
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTT-CCTTGGCGTCAGCAGCAGATTAAAG
* * * * * * *
5700200 TTGAAAGCGGTGAATCTTATTTCTCTGGC-TTCACAGT----AGATTAAAGCTGAAGGCAGTGAA
65 CTGAAGGCAGCGAATCTTATTTCCCTGGCATT-GCAGTGAACAGATTAAAGCTGAAGGCAGCGAA
* ** * * *
5700260 TCTCATTTCGTTGGCATTGT
129 TCTTATTTCCCTGGCGTCGC
* * * *
5700280 AGTGGAACAGATTAAAGCTGAAGGAAGCGAATCTTATTTCATTGACGTC-GCAGTAGATTAAAGC
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
* * * * * **** * * * *
5700344 TAAAGGAAACGAATCTTATTTTCTTAATTTTGCAGTAGAACAAATTAAAGCTGAAGCCAACAAAT
66 TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCGAAT
* * * **
5700409 ATTATTTCTCTGTCGTCTT
130 CTTATTTCCCTGGCGTCGC
* * ** * *
5700428 AGT-----AGATTAAAACTAAAGGCAGCGAATCACATTTCCTTGGCATTGT-AGTGGAACAGATT
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGC---GTCA--GCAGCAGATT
* * *
5700487 AACA-CTGAAGGCAGCGAATCTTATTTCCCTAGCATTGCAGT----AGACTAAAGCTGAAGGCGG
61 AA-AGCTGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAG
* * *
5700547 CGAATGTTATTTCCTTGGCGTTGC
125 CGAATCTTATTTCCCTGGCGTCGC
* * * * *
5700571 AGTGGAACAGATTAAAGCTGAAGGCAGTGAATCTTATTTCCCTT-GCATC-GTAGTAAATTAAAG
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTT-CCTTGGCGTCAGCAGCAGATTAAAG
* * * * * *
5700634 TTGAAGGCAGTGAATCTTACTTT--CTGGGCAATACAGTGGAACAGTTTAAAGCTGAAGGCAGCA
65 CTGAAGGCAGCGAATCTTA-TTTCCCT-GGCATTGCAGT-GAACAGATTAAAGCTGAAGGCAGCG
*
5700697 AATCTTATTTCCTTGGCGTCGC
127 AATCTTATTTCCCTGGCGTCGC
* * *
5700719 AGT-----AGATTAAAGCTGAAGACAGCAAATCTTATTTCTTTGGCGT
1 AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGT
5700762 TGCAGTGGGA
Statistics
Matches: 5270, Mismatches: 1233, Indels: 758
0.73 0.17 0.10
Matches are distributed among these distances:
136 69 0.01
137 40 0.01
138 21 0.00
139 6 0.00
140 47 0.01
141 122 0.02
142 358 0.07
143 1477 0.28
144 111 0.02
145 42 0.01
146 116 0.02
147 351 0.07
148 2428 0.46
149 63 0.01
150 11 0.00
151 8 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (148 bp):
AGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTCAGCAGCAGATTAAAGC
TGAAGGCAGCGAATCTTATTTCCCTGGCATTGCAGTGAACAGATTAAAGCTGAAGGCAGCGAATC
TTATTTCCCTGGCGTCGC
Found at i:5698121 original size:245 final size:245
Alignment explanation
Indices: 5697669--5698215 Score: 670
Period size: 245 Copynumber: 2.2 Consensus size: 245
5697659 TCAGTAGAAC
* * *
5697669 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGTTGCAGTAGAA-TAGAGTAAAGCAGA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTAGAACT-GATTAAAGCAGA
* *
5697733 AGGCAACAAATCTTATTTCCCTGACGTCGCAGTAGACTAAAGCTAAAGCCAACGACTCTTATTTC
65 AGGCAACAAATCTTATTTCCCTGACGTCGCAGTAGACTAAACCTAAAGCCAACGAATCTTATTTC
* * * * *
5697798 CCCGGCGTTGCAGTGGAACAGATTAAAGCTGAAAGCAGCGAATTCTATTTCCTTGGCATTGCAGT
130 CCCAGCATTGCAGTGGAACAGATTAAAGCAGAAAGCAACAAATTCTATTTCCTTGGCATTGCAGT
* *
5697863 GGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTC-CTTGGCATCGCATT
195 AGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCTC-TGGCATCGCAGT
* * * * **
5697914 AGATGAAAGCTGAAGGCAGCAAATCTCATTTCCTTGGCGTTGCAGTTGAACTGATTAAAGTTGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTAGAACTGATTAAAGCAGAA
* * * * * * **
5697979 GGCAGCAAATCTTATTTCGCTGGCGTCAG-AGTAGATTAAACCTTAAGGCAGTGAATCTTATTTC
66 GGCAACAAATCTTATTTCCCTGACGTC-GCAGTAGACTAAACCTAAAGCCAACGAATCTTATTTC
** * * * *
5698043 CTTAGCATTGCAGTGGAACATATTAAAGCAGAAGGCAATAAA-TCTTATTTCCTTGGCATTGTAG
130 CCCAGCATTGCAGTGGAACAGATTAAAGCAGAAAGCAACAAATTC-TATTTCCTTGGCATTGCAG
* * *
5698107 TAGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGTCATCGCAGT
194 TAGAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCTCTGGCATCGCAGT
* * * * *
5698159 AGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGTTGCAGTGGAACAGATTA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTAGAACTGATTA
5698216 TAGCTGACGG
Statistics
Matches: 255, Mismatches: 43, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
244 2 0.01
245 250 0.98
246 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (245 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTAGAACTGATTAAAGCAGAA
GGCAACAAATCTTATTTCCCTGACGTCGCAGTAGACTAAACCTAAAGCCAACGAATCTTATTTCC
CCAGCATTGCAGTGGAACAGATTAAAGCAGAAAGCAACAAATTCTATTTCCTTGGCATTGCAGTA
GAACAAATTAAAGCTGAAGGCAGCAAATCTTATTTCTCTGGCATCGCAGT
Found at i:5698558 original size:50 final size:51
Alignment explanation
Indices: 5698466--5698584 Score: 127
Period size: 50 Copynumber: 2.4 Consensus size: 51
5698456 AGCTAAAGCC
* * * *
5698466 AGCGAATCTTATTTCCTTAGCATTGCAGTAGAGCAGATTAAAGCTGACGAT
1 AGCGAATCTAATTTCCTTAGCATTACAGTAGAACAAATTAAAGCTGACGAT
* *
5698517 AGCGAAT-TAATTTCCTT-GACATTACAGTGGAACAAATTAAAGCTGAAAGA-
1 AGCGAATCTAATTTCCTTAG-CATTACAGTAGAACAAATTAAAGCTG-ACGAT
* *
5698567 AGCAAATCTTATTTCCTT
1 AGCGAATCTAATTTCCTT
5698585 GGCGTCGTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
49 1 0.02
50 37 0.65
51 19 0.33
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (51 bp):
AGCGAATCTAATTTCCTTAGCATTACAGTAGAACAAATTAAAGCTGACGAT
Found at i:5698711 original size:90 final size:90
Alignment explanation
Indices: 5698567--5698735 Score: 241
Period size: 90 Copynumber: 1.9 Consensus size: 90
5698557 AGCTGAAAGA
* * * * * *
5698567 AGCAAATCTTATTTCCTTGGCGTCGTATTAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTG
1 AGCAAATCTTATTTCCTTAGCGTCGTAGTAGATTAAAGCTGAAAGCAACAAATCTCATTTCCCTG
*
5698632 GCGTAGTAGTGGAAAAGCAGAAGGC
66 GCGTAGCAGTGGAAAAGCAGAAGGC
*
5698657 AGCACATCTTATTT-CTCTAGCGTCGTAGTAGATTAAAGCTGAAAGCAACAAATCTCATTTCCCT
1 AGCAAATCTTATTTCCT-TAGCGTCGTAGTAGATTAAAGCTGAAAGCAACAAATCTCATTTCCCT
*
5698721 GGCGTTGCAGTGGAA
65 GGCGTAGCAGTGGAA
5698736 CAGATTAAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
89 2 0.03
90 67 0.97
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (90 bp):
AGCAAATCTTATTTCCTTAGCGTCGTAGTAGATTAAAGCTGAAAGCAACAAATCTCATTTCCCTG
GCGTAGCAGTGGAAAAGCAGAAGGC
Found at i:5700292 original size:97 final size:96
Alignment explanation
Indices: 5700094--5700769 Score: 571
Period size: 97 Copynumber: 7.0 Consensus size: 96
5700084 ACGTCACAGT
* *
5700094 AGATTAAAGCTGAAGGCAGCGAATCTCATTT-TCTTGGCGTTC-CAGTGGAACAGATTAAAGCTA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTC-TGGCG-TCGCAGT-----AGATTAAAGCTG
* * * *
5700157 AAGGAAGCGAATCTTATTTACCTGGCGTCGCAGT-----
59 AAGGCAGCGAATCTTATTT-CTTGGCATTGCAGTGGAAC
* * * * * *
5700191 AGATTAAAGTTGAAAGCGGTGAATCTTATTTCTCTGGCTTCACAGTAGATTAAAGCTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* * *
5700256 TGAATCTCATTTCGTTGGCATTGTAGTGGAAC
66 CGAATCTTATTTC-TTGGCATTGCAGTGGAAC
* * * *
5700288 AGATTAAAGCTGAAGGAAGCGAATCTTATTTCAT-TGACGTCGCAGTAGATTAAAGCTAAAGGAA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTC-TCTGGCGTCGCAGTAGATTAAAGCTGAAGGCA
* **** *
5700352 ACGAATCTTATTTTCTTAATTTTGCAGTAGAAC
65 GCGAATCTTA-TTTCTTGGCATTGCAGTGGAAC
* * * * * * ** * *
5700385 AAATTAAAGCTGAAGCCAACAAATATTATTTCTCTGTCGTCTTAGTAGATTAAAACTAAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
** *
5700450 CGAATCACATTTCCTTGGCATTGTAGTGGAAC
66 CGAATCTTATTT-CTTGGCATTGCAGTGGAAC
* * * * * *
5700482 AGATTAACA-CTGAAGGCAGCGAATCTTATTTCCCTAGCATTGCAGTAGACTAAAGCTGAAGGCG
1 AGATTAA-AGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCA
* *
5700546 GCGAATGTTATTTCCTTGGCGTTGCAGTGGAAC
65 GCGAATCTTATTT-CTTGGCATTGCAGTGGAAC
* * * * * * *
5700579 AGATTAAAGCTGAAGGCAGTGAATCTTATTTCCCTTGCATCGTAGTAAATTAAAGTTGAAGGCAG
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
* * * *
5700644 TGAATCTTACTTTCTGGGCAATACAGTGGAAC
66 CGAATCTTA-TTTCTTGGCATTGCAGTGGAAC
* * *
5700676 AGTTTAAAGCTGAAGGCAGCAAATCTTATTTC-CTTGGCGTCGCAGTAGATTAAAGCTGAAGACA
1 AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTC-TGGCGTCGCAGTAGATTAAAGCTGAAGGCA
* *
5700740 GCAAATCTTATTTCTTTGGCGTTGCAGTGG
65 GCGAATCTTATTTC-TTGGCATTGCAGTGG
5700770 GATGGTTTGA
Statistics
Matches: 459, Mismatches: 103, Indels: 34
0.77 0.17 0.06
Matches are distributed among these distances:
91 1 0.00
92 36 0.08
96 12 0.03
97 399 0.87
98 11 0.02
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.30
Consensus pattern (96 bp):
AGATTAAAGCTGAAGGCAGCGAATCTTATTTCTCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAG
CGAATCTTATTTCTTGGCATTGCAGTGGAAC
Found at i:5700382 original size:143 final size:143
Alignment explanation
Indices: 5700051--5700364 Score: 390
Period size: 143 Copynumber: 2.2 Consensus size: 143
5700041 ACTGGAACAT
* * *
5700051 ATTAAAGCTG-AAG-GAAGTAATCTTATTT-TCCTGACGTCACAGTAGATTAAAGCTGAAGGCAG
1 ATTAAAGCTGAAAGCGACG-AATCTTATTTCT-CTAACTTCACAGTAGATTAAAGCTGAAGGCAG
*
5700113 CGAATCTCATTTTCTTGGCGTTCCAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTAC
64 CGAATCTCATTTTCTTGGCATTCCAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTAC
*
5700178 CTGGCGTCGCAGTAG
129 CTGACGTCGCAGTAG
* ** ** *
5700193 ATTAAAGTTGAAAGCGGTGAATCTTATTTCTCTGGCTTCACAGTAGATTAAAGCTGAAGGCAGTG
1 ATTAAAGCTGAAAGCGACGAATCTTATTTCTCTAACTTCACAGTAGATTAAAGCTGAAGGCAGCG
** *
5700258 AATCTCA-TTTCGTTGGCATTGTAGTGGAACAGATTAAAGCTGAAGGAAGCGAATCTTATTT-CA
66 AATCTCATTTTC-TTGGCATTCCAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTAC-
*
5700321 TTGACGTCGCAGTAG
129 CTGACGTCGCAGTAG
5700336 ATTAAAGCT-AAAG-GAAACGAATCTTATTT
1 ATTAAAGCTGAAAGCG--ACGAATCTTATTT
5700365 TCTTAATTTT
Statistics
Matches: 150, Mismatches: 15, Indels: 13
0.84 0.08 0.07
Matches are distributed among these distances:
141 1 0.01
142 18 0.12
143 128 0.85
144 3 0.02
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.30
Consensus pattern (143 bp):
ATTAAAGCTGAAAGCGACGAATCTTATTTCTCTAACTTCACAGTAGATTAAAGCTGAAGGCAGCG
AATCTCATTTTCTTGGCATTCCAGTGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTACCT
GACGTCGCAGTAG
Found at i:5700768 original size:194 final size:194
Alignment explanation
Indices: 5693744--5700769 Score: 3603
Period size: 194 Copynumber: 36.3 Consensus size: 194
5693734 TGTAGTGGAA
* * * ** * *
5693744 TAGATTAAAGCTGAAGGCAACAAATCTTATTTCCTTGGC-AT-C---GGAGTAGATGAAAACTGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * ** * * *
5693804 AGGCATCAAATCTTATTTTCCTAGCGTCACAGTAGATTAAAGCTAAAGGCAGCGAATCTCATTTC
66 AGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTTC
* * * * * ** * *
5693869 CCTCGCGTTGCAGTGGAACAGATTCAAGTTGAAGGTAGTAAATCTTATTTCCCTAGCGTCGCAG
131 CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * *
5693933 TAGGTTAAAGCTGAAGGCAGTGAATCTCATTTCCATGGCGTTGCAGTGGAACAGATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * ** * * *
5693998 AGGTAGCGAATCTTATTTCGCTGGGGTCACAGTAGATTAAAGCTG-A---A-TGAATCTCATTTC
66 AGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTTC
* * * * * *
5694058 CTTGGCGTTGCAGTGGAACAGATTAAAGTTGAAGGTAACGAATCTTATTT-CCTGGGGTCGAAG
131 CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * * *
5694121 TAGATTAAAGCAGAAGGAAGCGAATCTTATTTCTTTGGCGTTGCAGTGGAACAGATTAAATCTCA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * * * *
5694186 AGGCAACGAATATTATTTCCCTGGCGTCGCAGTAGATTAAAGCTAAAGGCAGCAAATCTTATTTC
66 AGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTTC
* * * * * **
5694251 CCTGCCGTTGTAGT---A-A-ATTAAAGTTGAAGGCAGCGAATCACATTTCTTTGGCATTGGCGT
131 CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAAT--C--TTATTT--CCCTGGCGT
*
5694311 CGCAG
190 TGCAG
* * * *
5694316 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTGGCAGT-----AGATTAAATCAGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * * * * *
5694376 AGGACA-CGAGTCTTA-TTCCCTCAGCATTGCAGTGGAACAGATTAAAGCTGAAGCCAGCGGATT
66 AGG-CAGCGAATCTTATTTCCCT-TGC-GT-C-GTAGTA-A-ATTAAAGCTGAAGGCAGCGAATC
* * * * * * **
5694439 TTATTTCCCTGGCATCGC--T-G--TAGATTAAACCTGAAGGTC-GCGAATCTTATTTCCTTTTC
124 TTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGG-CAGCGAATCTTATTTCCCTGGC
*
5694498 GTTACAG
188 GTTGCAG
* * **
5694505 TGGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCTGGCG-T-C-GT--AGTAGATTAAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAA
* * ** * * * **
5694564 ACTGAAGGCAGTGAATCTTATTTCGATTGTGTTGTAGTGGAACAGATTAAAGCTGAAGGTAGTAA
61 GCTGAAGGCAGCGAATCTTATTTCCCTTGCGTCGTAGT---A-A-ATTAAAGCTGAAGGCAGCGA
* * * * *
5694629 ATCTTATTTCCCTAGCG-T-CA---CAGCAGATTAAAGCTGAAGGCAGCAAATCTCT-TTTCCCT
121 ATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCT
*
5694688 GGCATTGCAG
185 GGCGTTGCAG
* * ** * * **
5694698 TGGAACAGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGC-AT-C-GT--AGTAGATTAAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAA
* * * * *
5694758 GCTGAAGGCGGTGAATCTTATTT-CCTTAGCGTTGCAGTGGAACAGATTAAAGCTAAAGGCAGCG
61 GCTGAAGGCAGCGAATCTTATTTCCCTT-GCG-T-C-GTAGTA-A-ATTAAAGCTGAAGGCAGCG
* * ** **
5694822 AATCTTATTTACC-TAGAG-T-C-GT--AGTAGATTAAA-CTTGAAGGCAGCGAATCGCATTTCC
120 AATCTTATTT-CCTTGGCGTTGCAGTGGAACAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCC
*
5694880 CTGGTGTTGCAG
183 CTGGCGTTGCAG
* * * ** * *
5694892 TAGATTAAAGCTGAAGGAAGTGAATCTTA-TTCCTTTGGCATCACAGTTGAACAAATTAAAGCTG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-TTGGCGTTGCAGTGGAACAGATTAAAGCTG
* * ** * * *
5694956 AAGGCAGCGAACCTCATTTCCCTAACGTCGTAATAGATTAAAGCTGAAGGCATCGAATCTTATTT
65 AAGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTT
** * * * *
5695021 CCTAAGCGTTGCAGTGGAACAGATTAAACCTGAAGCCAGTGAATCTTATTTCCCTGGCGTCGCAG
130 CCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * * * *
5695086 TAGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGCAGTGGAACAGATTAACA-CTA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAA-AGCTG
* * * * ** * *
5695150 AAGG--GTGAATATTATATCCCTGGCGTCGTAGTAAGCTAAAGTTGAAGGCAGAGAATCTTATTT
65 AAGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTT
* ** ** *
5695213 CCTTGGCGTTGCAGTGGAACATATTAAAATTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAG
130 CCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * * *
5695278 TGGAAAAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCGCAGT---A-A-ATTAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCTTGGCGTTGCAGTGGAACAGATTAA
* * * * *
5695337 AGCTGAAGGTAGCAAATCTTATTT-CCTTAGCATTGCAGTGGAACAGGTTAAAGCTGAAGGCAGC
60 AGCTGAAGGCAGCGAATCTTATTTCCCTT-GCGTCGTAGT--AA-A--TTAAAGCTGAAGGCAGC
* * * *
5695401 GAATCTCATCTCCTTGCCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCC
119 GAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC-AGCGAATCTTATTTCC
*** *
5695465 CTGGCACCGCAA
183 CTGGCGTTGCAG
* * * * * * *
5695477 TAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAGAACAGATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * *
5695542 AGGCAGCGAATCTTATTTCCC-TGCCGTTGCAGTAGAACAGAGTAAAGCAGAAGGCAACAAATCT
66 AGGCAGCGAATCTTATTTCCCTTG-CG-T-C-GTAGTA-A-ATTAAAGCTGAAGGCAGCGAATCT
* * * * * * * * *
5695606 TATTTCCCTGACGTCGCAGT-----AGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGT
125 TATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT
5695666 TGCAG
190 TGCAG
* * * * * *
5695671 TGGAACAGATTAAAGCTGAAAGCAACGAAT-TCCATTTCCTTGGCATTGCAGTAGAACAAATTAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCTTGGCGTTGCAGTGGAACAGATTAA
* * * * * * * * *
5695735 AGCTGAATGCAGCAAATCTTATTT-CCTTGGCATCGCATTAGATGAAAGCTGAAGGTAGCAAATC
60 AGCTGAAGGCAGCGAATCTTATTTCCCTT-GCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATC
* * * * * *
5695799 -CATTTCCTTGGCGTTGCAGTTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGCTGGCG
124 TTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG
*
5695863 TCAG-AG
189 T-TGCAG
* * * * *
5695869 TAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCGTTGCAGTGGAACATATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
*** * *
5695934 AGGCAATAAATCTTATTT-CCTTGGCATTGTAGTAGAACAGATTAAAGCTGAAGGCAGCGAATCT
66 AGGCAGCGAATCTTATTTCCCTT-GC---GTCGTAGTA-A-ATTAAAGCTGAAGGCAGCGAATCT
* * * * * * **
5695998 TATTTCCCTGTCATCGCAGT-----AGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCGT
125 TATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT
5696058 TGCAG
190 TGCAG
* * ** * * * *
5696063 TGGAACAGATTATAGCTGACGGCAGCGAATCCCATTTTCTTGGCATTGCAGTGGATCAAATTAAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAA
** * * * * * * * *
5696128 ATTGAAGGTAGCAAATCTTATTT-CCTTGGCATCGCATTAGATTAAAGCTGAAGGTAGCAAATCT
61 GCTGAAGGCAGCGAATCTTATTTCCCTT-GCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCT
* * * *
5696192 CATTTCTTTGGTGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGTCGT
125 TATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT
*
5696257 CGCAG
190 TGCAG
* * * * * * * *
5696262 TTGATTAAAGTTGAAGGCAGCAAATTTTATTTCCTTGGAGTTGTAGTAGAACAGATTAAAGCAGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * * * * *
5696327 AGGCACCAAATCTTATTTCCC-TGACGTCGCAATAGACTAAAGCTAAAGCCAGCGAATCTTATTT
66 AGGCAGCGAATCTTATTTCCCTTG-CGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTT
* * * * * * * * *
5696391 CCTTAGCATTGCAGTAGAACAGATTAAAGCTGACGACAGCGAAT-TACATTTCCTTGGCATTACA
130 CCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCTGGCGTTGCA
5696455 G
194 G
* * * * **
5696456 TGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCTTGGCG-T-C-GT--ATTAGATTAAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAA
* * ** * *
5696516 GCTGAAGGCAGCGAATCTCATTT-CCTTGGCGTAGTAGTGGA--AAAGCAGAAGGCAGCAAATCT
61 GCTGAAGGCAGCGAATCTTATTTCCCTT-GCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCT
* ** * * *
5696578 TATTT-CTCTAGCG-T-C-GT--AGTAGATTAAAGCTGAAGGCAACAAATCTCATTTCCCTGGCG
125 TATTTCCT-TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG
5696637 TTGCAG
189 TTGCAG
* * * **
5696643 TGGAACAGATTAAAGCTGAA-GCAGTGAATCTTATTTCCCTGGTG-T-C-GT--AGTAGATTAAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAA
* * ** * * **
5696702 ACTGAAGGCAGTGAATCTTATTTCGATTGCGTTGTAGTGGAACAAATTAAAGCTGAAGGTAGTAA
61 GCTGAAGGCAGCGAATCTTATTTCCCTTGCGTCGTAGT-----AAATTAAAGCTGAAGGCAGCGA
* * ** * * *
5696767 ATCTTATTTCCCTAGCGTAACA---G--CAGATTAAAGCTAAAGGCAACAAATCTCT-TTTCCCT
121 ATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCCT
*
5696826 GGCATTGCAG
185 GGCGTTGCAG
* * ** * * **
5696836 TGGAACAGATTAAAGCTGAATGTAGTAAATCTTATTTCCCTGGC-AT-C-GT--AGTAGATTAAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAA
* * * * *
5696896 GCTGAAGGCGGTGAATCTTATTT-CCTTAGCGTTGCAGTGGAACAGATTAAAGCTAAAGGCAGCG
61 GCTGAAGGCAGCGAATCTTATTTCCCTT-GCG-T-C-GTAGTA-A-ATTAAAGCTGAAGGCAGCG
* ** *
5696960 AATCTTATTTACC-TGGAG-T-C-GT--AGTAGATTAAA-CTTGAAGGCAGCGAATCTCATTTCC
120 AATCTTATTT-CCTTGGCGTTGCAGTGGAACAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCC
*
5697018 CTGGTGTTGCAG
183 CTGGCGTTGCAG
* * ** *
5697030 TAGATTAAAGCTGAAGGAAGCGAATCTTA-TTCCTTTGGCATCACAGTGGAACAAATTAAAGCTG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCC-TTGGCGTTGCAGTGGAACAGATTAAAGCTG
* ** * * *
5697094 AAGGCAGCGAATCTCATTTCCCTAACGTCGTAATAGATTAAAGCTGAAGGCATCGAATCTTATTT
65 AAGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTT
** * * *
5697159 CCTAAGCGTTGCAGTGGAACAGATTAAA-CTTGAAGCCAGTGAATCTTATTTCCCTGGCGTCGCA
130 CCTTGGCGTTGCAGTGGAACAGATTAAAGC-TGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCA
5697223 G
194 G
* * * * * * *
5697224 TAGGTTAAAGCTGAATGCAGCGAATCTCATTTTCTTGGCATTGCAGTGGAACAGATTAACGCTAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * ** * *
5697289 AGGCAGTGAATCTTATATCCCTGGCGTCGCAGTAAGCTAAAGTTGAAGGCAGAGAATCTTATTTC
66 AGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTTC
* * ** *
5697354 CTTGGCGTTGCAGTGGAACATATTAAAGTTGAAGGCAGTAAATCTTATTTCCTTGGCGTTGCAG
131 CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * * *
5697418 TGGAACAGATTAAAACTGAAGGTAGCGAA-CTTTATTTCCATGTCGTCGCAGT---A-A-ATTAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATC-TTATTTCCTTGGCGTTGCAGTGGAACAGATTAA
* * * * *
5697477 AGCTGAAGGTAGCAAATCTTATTT-CCTTAGCATTGCAGTGGAACAGGTTAAAGCTGAAGGCAGC
60 AGCTGAAGGCAGCGAATCTTATTTCCCTT-GCGTCGTAGT--AA-A--TTAAAGCTGAAGGCAGC
* * * *
5697541 GAATCTCATCTCCTTGCCGTTGTAGTGGAACAGATTAAAGCTGAAGGCAAG-GAATCTTATTTCC
119 GAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGC-AGCGAATCTTATTTCC
*** *
5697605 CTGGCACCGCAA
183 CTGGCGTTGCAG
* * * * * * *
5697617 TAGACTAAAGGTAAAGGCGGTGAATCTTATTTCCTTGGCGTTTCAGTAGAACAGATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * *
5697682 AGGCAGCGAATCTTATTTCCC-TGTCGTTGCAGTAGAATAGAGTAAAGCAGAAGGCAACAAATCT
66 AGGCAGCGAATCTTATTTCCCTTG-CG-T-C-GTAG--TAAATTAAAGCTGAAGGCAGCGAATCT
* * * * * * * * *
5697746 TATTTCCCTGACGTCGCAGT-----AGACTAAAGCTAAAGCCAACGACTCTTATTTCCCCGGCGT
125 TATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT
5697806 TGCAG
190 TGCAG
* * *
5697811 TGGAACAGATTAAAGCTGAAAGCAGCGAAT-TCTATTTCCTTGGCATTGCAGTGGAACAAATTAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCT-TATTTCCTTGGCGTTGCAGTGGAACAGATTAA
* * * * * * *
5697875 AGCTGAAGGCAGCAAATCTTATTT-CCTTGGCATCGCATTAGATGAAAGCTGAAGGCAGCAAATC
60 AGCTGAAGGCAGCGAATCTTATTTCCCTT-GCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATC
* * * * * *
5697939 TCATTTCCTTGGCGTTGCAGTTGAACTGATTAAAGTTGAAGGCAGCAAATCTTATTTCGCTGGCG
124 TTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG
*
5698004 TCAG-AG
189 T-TGCAG
* * * * * * *
5698010 TAGATTAAACCTTAAGGCAGTGAATCTTATTTCCTTAGCATTGCAGTGGAACATATTAAAGCAGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
*** * *
5698075 AGGCAATAAATCTTATTT-CCTTGGCATTGTAGTAGAACAGATTAAAGCTGAAGGCAGCGAATCT
66 AGGCAGCGAATCTTATTTCCCTT-GC---GTCGTAGTA-A-ATTAAAGCTGAAGGCAGCGAATCT
* * * * * **
5698139 TATTT-CTCTGTCATCGCAGT-----AGATTCAAGCTGAAGGTAGCGAATCTTATTTCGTTGGCG
125 TATTTCCT-TGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG
5698198 TTGCAG
189 TTGCAG
* * * ** * * * * *
5698204 TGGAACAGATTATAGCTGACGGCAGTGAATCCCATTTTCTTGGCATTGTAGTGGATCAAATTAAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAA
** * * * * * * * *
5698269 ATTGAAGGTAGCAAATCTTATTT-TCTTGGCGTCGCATTAGATTAAAGCTGAAGGTAGCAAATCT
61 GCTGAAGGCAGCGAATCTTATTTCCCTT-GCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCT
* * * * * * * * *
5698333 TATTTCCCTGTCGTTGCAGT-----TGATTAAAGTTGAA-ACAGCAAATTTTATTTCCTTGGAGT
125 TATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT
*
5698392 TGTAG
190 TGCAG
* * * * * * * * *
5698397 TAGAACAGATTAAAGCAGAATGCACCAAATCTTATTTCCCTGACG-T-C---GCAATAGACTAAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAA
* * * * **
5698457 GCTAAAGCCAGCGAATCTTATTT-CCTTAGCATTGCAGTAG-AGCAGATTAAAGCTGACGATAGC
61 GCTGAAGGCAGCGAATCTTATTTCCCTT-GC-GT-C-GTAGTA--A-ATTAAAGCTGAAGGCAGC
* * * * * * * * *
5698520 GAAT-TAATTTCCTTGACATTACAGTGGAACAAATTAAAGCTGAAAGAAGCAAATCTTATTTCCT
119 GAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
* * *
5698584 TGGCGTCGTAT
184 TGGCGTTGCAG
* * * *
5698595 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTGGCGTAGTAGT-G----GA--AAAGCAGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * * * *
5698653 AGGCAGC-ACATCTTATTTCTCTAGCGTCGTAGTAGATTAAAGCTGAAAGCAACAAATCTCATTT
66 AGGCAGCGA-ATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTT
* * * *** * *
5698717 CCCTGGCGTTGCAGTGGAACAGATTAAAGTTGAAGCCAATAAATCTTATTTCCCTGGCATCGCAG
130 CCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * *
5698782 TAGATTAAAGCTGAAGGCAGCGAATCTCATTTCCTTAGTGTTGCAGTGGAACAGATTAAAGCTAA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * * *
5698847 AGGTAGCGAATCTTATTTCTC-TGCTGGCGCAGTAAATTAAAGCTGAAGGAAGTGAATCTTATTT
66 AGGCAGCGAATCTTATTTCCCTTGC-GTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTT
* ** * * * *
5698911 GCTTGGCGTTATAGTGGAACAGATTAAAGTTAAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAG
130 CCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * * * *
5698976 TAGATTAAAGATGAAGGCAGCGAGTCTTATTTCCTTAGCGTTGTAGTGGAATAGATTAAAGCAGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * ** * * * *
5699041 AGGCAGTGAATCTTATTTCCCTGGCGTCGCAGTAGGTTAAAGCTGAAGCCAGAGAATCTCATTTT
66 AGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTTC
* ** * * * * * * *
5699106 TTTGTAGTCGCAGTGGAACAGATTAAAGCTGACGGTAACAAATCTTATTTCCCTAGCGTCGCAG
131 CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * * * * * * *
5699170 TAGATTAAAGCAGGAGGCAACAAAT-TTCATTTCCCTAGCATTGTAGTGGAACAGAATAAAGCTG
1 TAGATTAAAGCTGAAGGCAGCGAATCTT-ATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTG
** * * * * * * *
5699234 AAGGCAGTAAATATTATTTCCCTAGCGTCGCAGTAGATTAAAGCTGAAGGCAACGAATCTCATCT
65 AAGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTT
** * * * * **
5699299 CCTTGGTATTGCAGCGGAACAGATTAAAACTGAAGGCAGCAAACCTTATTTCCCTGGCGTCACAG
130 CCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * * * * *
5699364 TAGAATAAAGATAAAGCCAGTGAATCTTATTTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * ** * * *
5699429 TGACAGCGAATCTCCTTT-CCTTGGCGTTGTAGTGGAACAAATTAAAGCTGAAGGCAACAAATCT
66 AGGCAGCGAATCTTATTTCCCTT-GCGTCGTAGT-----AAATTAAAGCTGAAGGCAGCGAATCT
** * ** * * * * * * *
5699493 TATTTCCTTAACG-T-CA---CATTAGATTAAAGCTAAAGGTAGCAAATCTCATTTCCTTAGTGT
125 TATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT
5699553 TGCAG
190 TGCAG
* * * * *
5699558 TGGAACAGATTAAAG-TAGGAGGCAACAAATCTTATTT-CTCTAGCGTCGCAGT-----AGATTA
1 T-----AGATTAAAGCT-GAAGGCAGCGAATCTTATTTCCT-TGGCGTTGCAGTGGAACAGATTA
* * * * * * * ** * * *
5699616 AAGTTAAAGGCAGCAAATATCATTTCCCTGGCATTGCAGTGGAACAAATTAAAGTTAAAGGCAGT
59 AAGCTGAAGGCAGCGAATCTTATTTCCCTTGC-GT-C-GT--AGTAAATTAAAGCTGAAGGCAGC
* * * * * * * * * * *
5699681 AAATTTTATTTCCCTGGCATCGCAGT-----AGATTAAAGCTGCACGTAGCAAATCTCATTTCCT
119 GAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
*
5699741 TGGTGTTGCAGTGG
184 TGGCGTTGCA---G
* * * *
5699755 AATAGATTAAAGTTGAAGGCAGCGAATCTTATTTCCCTGGCATCGCAGT-----AGATTAAAGCT
1 --TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCT
* ** * * * * * *
5699815 GAAGGCAGTGAATCTTATTTCATTTCCGTTGCAGTGGAACAGATTAAAGTTGAAGGTAGCGAATT
64 GAAGGCAGCGAATCTTATTTCCCTTGCG-T-C-GTAGTA-A-ATTAAAGCTGAAGGCAGCGAATC
* * * * * * *
5699880 TTATTTCCCTAGCGTTGCAGT-----AGATTAAAGCTAAAGGCAGCGAATCTCATTTCCATTGCA
124 TTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCG
5699940 TTGCAG
189 TTGCAG
* * * * * * *
5699946 TGGAAGAAATTAAAGCTGACGGCATCAAATCTTTTTTCCCTAGCGTCGC--T----CTAGATTAA
1 T---AG--ATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAAC-AGATTAA
** * * * * * * * * *
5700005 ATTTAAAGGCATCGAATCTCATTTCCCTGGCGTTGCACTGGAACATATTAAAGCTGAAGGAAG-T
60 AGCTGAAGGCAGCGAATCTTATTTCCCTTGCG-T-C-GTAGTA-A-ATTAAAGCTGAAGGCAGCG
* ** * * *
5700069 AATCTTATTTTCC-TGACGTCACAGT-----AGATTAAAGCTGAAGGCAGCGAATCTCATTTTCT
120 AATCTTA-TTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCC
*
5700128 TGGCGTTCCAG
184 TGGCGTTGCAG
* * *
5700139 TGGAACAGATTAAAGCTAAAGGAAGCGAATCTTATTTACC-TGGCGTCGCAGT-----AGATTAA
1 T-----AGATTAAAGCTGAAGGCAGCGAATCTTATTT-CCTTGGCGTTGCAGTGGAACAGATTAA
* * * * * * * ** * *
5700198 AGTTGAAAGCGGTGAATCTTATTTCTCTGGCTTCACAGTAGATTAAAGCTGAAGGCAGTGAATCT
60 AGCTGAAGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCT
* * * * * ** *
5700263 CATTTCGTTGGCATTGTAGTGGAACAGATTAAAGCTGAAGGAAGCGAATCTTATTTCATTGACGT
125 TATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGT
*
5700328 CGCAG
190 TGCAG
* * * * **** * *
5700333 TAGATTAAAGCTAAAGGAAACGAATCTTATTTTCTTAATTTTGCAGTAGAACAAATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * * * * * * * **
5700398 AGCCAACAAATATTATTTCTC-TGTCGTCTTAGTAGATTAAAACTAAAGGCAGCGAATCACATTT
66 AGGCAGCGAATCTTATTTCCCTTG-CGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTT
* * * *
5700462 CCTTGGCATTGTAGTGGAACAGATTAACA-CTGAAGGCAGCGAATCTTATTTCCCTAGCATTGCA
130 CCTTGGCGTTGCAGTGGAACAGATTAA-AGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCA
5700526 G
194 G
* * *
5700527 TAGACTAAAGCTGAAGGCGGCGAATGTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
* * * *
5700592 AGGCAGTGAATCTTATTTCCCTTGCATCGTAGTAAATTAAAGTTGAAGGCAGTGAATCTTACTTT
66 AGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTA-TTT
* ** * * * * *
5700657 -CTGGGCAATACAGTGGAACAGTTTAAAGCTGAAGGCAGCAAATCTTATTTCCTTGGCGTCGCAG
130 CCTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
* * *
5700721 TAGATTAAAGCTGAAGACAGCAAATCTTATTTCTTTGGCGTTGCAGTGG
1 TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGG
5700770 GATGGTTTGA
Statistics
Matches: 5305, Mismatches: 1190, Indels: 679
0.74 0.17 0.09
Matches are distributed among these distances:
186 78 0.01
187 156 0.03
188 193 0.04
189 279 0.05
190 41 0.01
191 53 0.01
192 188 0.04
193 594 0.11
194 2545 0.48
195 150 0.03
196 29 0.01
197 64 0.01
198 97 0.02
199 813 0.15
200 14 0.00
201 3 0.00
202 7 0.00
204 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (194 bp):
TAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCTTGGCGTTGCAGTGGAACAGATTAAAGCTGA
AGGCAGCGAATCTTATTTCCCTTGCGTCGTAGTAAATTAAAGCTGAAGGCAGCGAATCTTATTTC
CTTGGCGTTGCAGTGGAACAGATTAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAG
Found at i:5700867 original size:44 final size:44
Alignment explanation
Indices: 5700796--5701014 Score: 237
Period size: 44 Copynumber: 5.0 Consensus size: 44
5700786 CATGGTAGAT
* *
5700796 CTTATCTCCCTGAACTTGTAGTGGAGCAGATTAAAGCCACAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
* * *
5700840 CTTATCCCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCACAACC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
* * ** *
5700884 CTTATC-CCCATGAAGTTGCAGT-GAGGCAGGTTGAAGTGACAAAT
1 CTTATCTCCC-TGAAGTTGCAGTGGA-GCAGATTAAAGCCACAAAC
* * **
5700928 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAA-CCACCAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCCACAAAC
* * *
5700972 CTTATTTCCCTGAAGTTGCAGTGGAGCAGACTAAAACCACAAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAA
5701015 TCTCTTCCCC
Statistics
Matches: 146, Mismatches: 23, Indels: 12
0.81 0.13 0.07
Matches are distributed among these distances:
43 8 0.05
44 132 0.90
45 6 0.04
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAAAC
Found at i:5702897 original size:97 final size:97
Alignment explanation
Indices: 5701891--5702894 Score: 1200
Period size: 97 Copynumber: 10.4 Consensus size: 97
5701881 GCGAGGGTTG
*
5701891 TAAAGCTGAAGTCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * *
5701956 TCTGATTTCCTTTGCGTTGCAGAGGAACAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * * *
5701988 TAAAGCTGAAGGCAGCAAATCCTATTTCCCTGGTGTCACAGTAGATTAAACCTGAAGGTAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
*
5702053 TCAT-ATTGCCTTGGCGTTGCAGTGGAACAGAT
66 TC-TCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * *
5702085 TAAAGTTGAAGGCAGTAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGACAACGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * *
5702150 TCTCATTTCCTTGGCGTTACGGTGGAATAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * **
5702182 TATAGCTGAAGGTACCAAATCTTATTTCCCTGGCGTCATAGTAGATTAAAGCTGAAGGCAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
5702247 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * *
5702279 TAAAGCTGAAGGTAGTAAATCTTATTTCCTTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGTGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * * *
5702344 TCTTATTTCCTTGGCGGTGTAGTGGAATAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * * * * *
5702376 TGAAGCTGAAGGTAACAAATCTTATTTCCCTGGCCTCGTAGTAGATTAAAGCTAAAGGTAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * ** *
5702441 TCACATTTCTTTGGTATTGCAGTGGAACAGAG
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * *
5702473 TAAACCTTAAGGCAGCGAATCTTATTTCCCTGGCGTTGCAGTAGATTAAAGCTGAAGGCAGCGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * * * *
5702538 TCTCATTTCTTTGGCATTGTAGTGGGATAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * ** * * * * **
5702570 TAAAGTTGAAGGCAGCGAATCTTATTTCCCCGATGTCGTAGTAGATTAAAACTGAATGTAGTAAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* * * *
5702635 TCTCATTTCATTGGCGTTACAATGGAACAGTT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
* * * * * * * *
5702667 TAAAGCTAAAAGCAGCGAATCTTATTTCCCTAGTGTCGAAATAGATTAAAGCTGAAGGCAGCAAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* *
5702732 TCTCATTTCCTTGGCGTTGCAATGAAACAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
** * * * * * * *
5702764 TAAAATTGAAGGTAACGAATCTTATTTCCTTGGCATCGCAGTAGATTAAAGCTCAAGGCAGAGAA
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
* *
5702829 TCTTATTTCCTTGGCGTTGCAATGGAACAGAT
66 TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
*
5702861 TAAAGCTGAAGGCAGCGAATCTTATTTCCCTGGC
1 TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGC
5702895 ATCATAGTGG
Statistics
Matches: 766, Mismatches: 139, Indels: 4
0.84 0.15 0.00
Matches are distributed among these distances:
96 1 0.00
97 764 1.00
98 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (97 bp):
TAAAGCTGAAGGCAGCAAATCTTATTTCCCTGGCGTCGCAGTAGATTAAAGCTGAAGGCAGCGAA
TCTCATTTCCTTGGCGTTGCAGTGGAACAGAT
Found at i:5702994 original size:44 final size:44
Alignment explanation
Indices: 5702929--5703108 Score: 193
Period size: 44 Copynumber: 4.1 Consensus size: 44
5702919 ATCATGGTAG
5702929 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
* * * **
5702973 ACCTTATC-CCCTTGAAGTTGCAGT-GAGGCAGGTTGAAGTGACAA
1 ATCTTATCTCCC-TGAAGTTGCAGTGGA-GCAGATTAAAGCCACAA
* * * * *
5703017 ATCTTATCTTCCTGAAGTTGCAATGGAGTAGATTGAAGCCACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
* * * * *
5703061 GTCTTATTTCCCTAAAGTTGCAGTGGAGCAGACTAAAACCACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
5703105 ATCT
1 ATCT
5703109 CGTCCCCTTT
Statistics
Matches: 108, Mismatches: 24, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
43 5 0.05
44 99 0.92
45 4 0.04
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.27
Consensus pattern (44 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACAA
Found at i:5704785 original size:27 final size:28
Alignment explanation
Indices: 5704749--5704805 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
5704739 TTTTTTACGG
*
5704749 TTTTATTTTGTAATACATTTTTAGGTCA
1 TTTTATTTTGTAATACACTTTTAGGTCA
* **
5704777 TTTTA-TTTGTGATAGGCTTTTAGGTCA
1 TTTTATTTTGTAATACACTTTTAGGTCA
5704804 TT
1 TT
5704806 AACTTTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.21, C:0.07, G:0.16, T:0.56
Consensus pattern (28 bp):
TTTTATTTTGTAATACACTTTTAGGTCA
Found at i:5708617 original size:18 final size:17
Alignment explanation
Indices: 5708591--5708626 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5708581 TTTGTTTATA
5708591 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
5708609 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
5708626 T
1 T
5708627 CATTTAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:5713102 original size:94 final size:94
Alignment explanation
Indices: 5712914--5713121 Score: 276
Period size: 94 Copynumber: 2.2 Consensus size: 94
5712904 AGTCTGCTCC
* * * *
5712914 ACTGTAACGTCAGGGAGATAAGACTTGTTATGGTAAATTTAATCCGACCTACTTCAACTTCAGAG
1 ACTGCAACTTCAGGGAGATAAGACTTGTCATGGTAAATTTAATCCAACCTACTTCAACTTCAGAG
*
5712979 GTATAGGATTAGTAGCTTCAGTATACTCT
66 GTATAGGATTAGTAGCTTCAATATACTCT
**
5713008 ACTGCAACTTTTGGGAGATAAGACTTGTCATGGTAAATTTAATCCAACCTACTGT-AACTTCAGA
1 ACTGCAACTTCAGGGAGATAAGACTTGTCATGGTAAATTTAATCCAACCTACT-TCAACTTCAGA
* * * *
5713072 GGTATAGGATTTA-TAGTTTTAATCTGCTCT
65 GGTATAGGA-TTAGTAGCTTCAATATACTCT
*
5713102 ACTGTAACTTCAGGGAGATA
1 ACTGCAACTTCAGGGAGATA
5713122 GGATTTGTAT
Statistics
Matches: 98, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
94 94 0.96
95 4 0.04
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (94 bp):
ACTGCAACTTCAGGGAGATAAGACTTGTCATGGTAAATTTAATCCAACCTACTTCAACTTCAGAG
GTATAGGATTAGTAGCTTCAATATACTCT
Found at i:5713511 original size:89 final size:89
Alignment explanation
Indices: 5713338--5714105 Score: 988
Period size: 89 Copynumber: 8.6 Consensus size: 89
5713328 CTGCAAACTA
* * *
5713338 TGGTGTCTTTGATCTGCTTCGCTGTCAGTACAAGAAGGCAAGATCTGCTATCTTCAGTCTGCTTC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* * * ** *
5713403 ACT-ACA-AACTTAGGGAGGCAAGAC
66 GCTGTCAGTAC--AGAAAGGCAAGGC
* * * * * ** *
5713427 TAGTGTCTTCGATCTTCTTCGTTGTTAGTACAGGAAGGCGAGATCTATTATCTTTAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
**
5713492 GCTGTCAGTACAGAAAGGCAAAAC
66 GCTGTCAGTACAGAAAGGCAAGGC
* * *
5713516 TGGTGTCTTTGATCTGTTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTACCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
5713581 GCTGTCAGTACAAGAAA-GCAAGGC
66 GCTGTCAGTAC-AGAAAGGCAAGGC
* * *
5713605 TAGTGTCTTCGATCTGCTTCACTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCT
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
5713670 GCTGTCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGAAAGGCAAGGC
* * * * *
5713694 TGGTGTCTTTGATATGCTTCGCTGTCAGTACAAGAAGGTAAGATCTACTATCTTCAGTCTGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
5713759 GCTATCAGTACAGGAAGGCAAGGC
66 GCTGTCAGTACAGAAAGGCAAGGC
* * *
5713783 TGGTG-CATTCGATCTGCTTCGCTATCAGTACAGGAAGGCAAGATCTACTATCTTCAGTCTACTC
1 TGGTGTC-TTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTC
* * *
5713847 CGTTGTCAGTACAGGAAGGTAAGGC
65 CGCTGTCAGTACAGAAAGGCAAGGC
* * * *
5713872 TGGTGTCTTTGATCTACTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTTTGCTCT
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
* *
5713937 GCTGTCAGTACATAAAGGCAAGGT
66 GCTGTCAGTACAGAAAGGCAAGGC
* * * *
5713961 TGGTGTCTTCGATCTACTTCACTGTCAGTACAGGAAGGCAAGATTTGCTATCTTCAGTATGCTCC
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
*
5714026 GCTGTCAGTACACG-AAGGCAATGC
66 GCTGTCAGTACA-GAAAGGCAAGGC
* *
5714050 TAGTGTCTTCGATCTGCTTCGCTGTCAGGACAGGAAGGCAAGATCTGCTATCTTCA
1 TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCA
5714106 TTGATCTATT
Statistics
Matches: 592, Mismatches: 80, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
88 5 0.01
89 577 0.97
90 8 0.01
91 2 0.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (89 bp):
TGGTGTCTTCGATCTGCTTCGCTGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCC
GCTGTCAGTACAGAAAGGCAAGGC
Found at i:5715369 original size:5 final size:5
Alignment explanation
Indices: 5715359--5715416 Score: 75
Period size: 5 Copynumber: 11.4 Consensus size: 5
5715349 GGCCTCTCCT
5715359 TTTTC TTTTC TTTCTC TTTTTC TTTTC TTTTC TTTTC TTCTTC -TTT-
1 TTTTC TTTTC TTT-TC -TTTTC TTTTC TTTTC TTTTC TT-TTC TTTTC
5715405 TTTTC TTTTC TT
1 TTTTC TTTTC TT
5715417 GATATATTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
4 5 0.10
5 33 0.69
6 7 0.15
7 3 0.06
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:5715379 original size:18 final size:18
Alignment explanation
Indices: 5715353--5715413 Score: 65
Period size: 17 Copynumber: 3.4 Consensus size: 18
5715343 CGCCTTGGCC
*
5715353 TCTCCTTTTTCTTTTCTT
1 TCTCTTTTTTCTTTTCTT
5715371 TCTC-TTTTTCTTTTCTT
1 TCTCTTTTTTCTTTTCTT
5715388 T-TCTTTTCTTCTTCTT-TT
1 TCTCTTTT-TTCTT-TTCTT
*
5715406 TTTCTTTT
1 TCTCTTTT
5715414 CTTGATATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
16 2 0.05
17 17 0.44
18 12 0.31
19 8 0.21
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (18 bp):
TCTCTTTTTTCTTTTCTT
Found at i:5715390 original size:27 final size:29
Alignment explanation
Indices: 5715359--5715416 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
5715349 GGCCTCTCCT
5715359 TTTTCTTTTC-T-TTCTCTTTTTCTTTTC
1 TTTTCTTTTCTTCTTCTCTTTTTCTTTTC
*
5715386 TTTTCTTTTCTTCTTCTTTTTTTCTTTTC
1 TTTTCTTTTCTTCTTCTCTTTTTCTTTTC
5715415 TT
1 TT
5715417 GATATATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 10 0.36
28 1 0.04
29 17 0.61
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (29 bp):
TTTTCTTTTCTTCTTCTCTTTTTCTTTTC
Found at i:5719305 original size:35 final size:35
Alignment explanation
Indices: 5719266--5719341 Score: 143
Period size: 35 Copynumber: 2.2 Consensus size: 35
5719256 TATATGTATG
5719266 TATATAAATAAAATTCTGAAAATATGAAAAATATA
1 TATATAAATAAAATTCTGAAAATATGAAAAATATA
5719301 TATATAAATAAAATTCTGAAAATATGAAAAATATA
1 TATATAAATAAAATTCTGAAAATATGAAAAATATA
*
5719336 TGTATA
1 TATATA
5719342 TATATATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.33
Consensus pattern (35 bp):
TATATAAATAAAATTCTGAAAATATGAAAAATATA
Found at i:5719748 original size:19 final size:19
Alignment explanation
Indices: 5719724--5719760 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
5719714 TAAATGAGCA
*
5719724 AATAATTACAATAATAATT
1 AATAATAACAATAATAATT
*
5719743 AATAATAACAGTAATAAT
1 AATAATAACAATAATAAT
5719761 ATCAAATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (19 bp):
AATAATAACAATAATAATT
Found at i:5721733 original size:144 final size:144
Alignment explanation
Indices: 5721473--5721776 Score: 450
Period size: 144 Copynumber: 2.1 Consensus size: 144
5721463 TTGTGGAATT
* * * * * *
5721473 GTTGGTCCAATCCCTTCTACTTTGGGTTAGTTATTAAATCTCAAATCTTTAATTCTTTAGGGCAA
1 GTTGGTTCAATCCCTTCTACTTCGAGTCAGTTATTAAACCTCAAATCTTTAATTCTTTAGGGAAA
* ** *
5721538 CAAAATTAATGGATCTATTCCATCTGGAGTTGGATTCTTATCAAACTTAACTTATTTTGATGTCT
66 CAAAATCAATGGATCTATTCCATCTAAAGTTGGATTCTTATCAAACTTAACTTATTTCGATGTCT
*
5721603 ACGACAACAGACTA
131 ACGACAACAAACTA
*
5721617 GTTGGTTCAATCCCTTCTGCTTCGAGTCAGTTATTAAACCTCAAATAC-TTAATTCTTGT-GGGA
1 GTTGGTTCAATCCCTTCTACTTCGAGTCAGTTATTAAACCTCAAAT-CTTTAATTCTT-TAGGGA
5721680 AACAAAATCAATGGATCTATTCCATCTAAAGTTGGATTCTTATCAAACTTAACTTATTTCGATGT
64 AACAAAATCAATGGATCTATTCCATCTAAAGTTGGATTCTTATCAAACTTAACTTATTTCGATGT
*
5721745 CTACGACAACAAACTG
129 CTACGACAACAAACTA
*
5721761 GTTGGTTCAATACCTT
1 GTTGGTTCAATCCCTT
5721777 TTTCCTTGTA
Statistics
Matches: 144, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
144 142 0.99
145 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (144 bp):
GTTGGTTCAATCCCTTCTACTTCGAGTCAGTTATTAAACCTCAAATCTTTAATTCTTTAGGGAAA
CAAAATCAATGGATCTATTCCATCTAAAGTTGGATTCTTATCAAACTTAACTTATTTCGATGTCT
ACGACAACAAACTA
Found at i:5731896 original size:13 final size:14
Alignment explanation
Indices: 5731873--5731911 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
5731863 GACAACCAAC
5731873 AGAACAACAAATAG
1 AGAACAACAAATAG
5731887 AGAA-AACAAATAG
1 AGAACAACAAATAG
* *
5731900 AAAACGACAAAT
1 AGAACAACAAAT
5731912 GAGGCAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.67, C:0.13, G:0.13, T:0.08
Consensus pattern (14 bp):
AGAACAACAAATAG
Found at i:5733845 original size:6 final size:6
Alignment explanation
Indices: 5733802--5733844 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
5733792 TGGCGACTCC
*
5733802 CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT CATTTT C
1 CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT C
5733845 AAAATCTAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.02, C:0.19, G:0.14, T:0.65
Consensus pattern (6 bp):
CGTTTT
Found at i:5734960 original size:19 final size:19
Alignment explanation
Indices: 5734936--5734982 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
5734926 AATGTCTCTT
*
5734936 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
5734955 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
5734974 TGTGCATTA
1 TTTGCATTA
5734983 GATTTTTACA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:5737533 original size:6 final size:6
Alignment explanation
Indices: 5737533--5737564 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
5737523 AAAAATCAAA
*
5737533 AAAATC AAAATC AAAATC AAAATG AAAATC AA
1 AAAATC AAAATC AAAATC AAAATC AAAATC AA
5737565 GAATAAAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.69, C:0.12, G:0.03, T:0.16
Consensus pattern (6 bp):
AAAATC
Found at i:5737540 original size:19 final size:20
Alignment explanation
Indices: 5737516--5737554 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
5737506 GTTCAGATTC
5737516 AATCAAAA-AAAATCAAAAA
1 AATCAAAACAAAATCAAAAA
5737535 AATCAAAATCAAAATCAAAA
1 AATCAAAA-CAAAATCAAAA
5737555 TGAAAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
21 10 0.56
ACGTcount: A:0.74, C:0.13, G:0.00, T:0.13
Consensus pattern (20 bp):
AATCAAAACAAAATCAAAAA
Found at i:5737572 original size:18 final size:18
Alignment explanation
Indices: 5737533--5737594 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
5737523 AAAAATCAAA
*
5737533 AAAATCAAAATCAA-AAT
1 AAAATGAAAATCAAGAAT
5737550 CAAAATGAAAATCAAGAAT
1 -AAAATGAAAATCAAGAAT
*
5737569 AAAA-GAAAA--AAGAAG
1 AAAATGAAAATCAAGAAT
*
5737584 AAAAAGAAAAT
1 AAAATGAAAAT
5737595 GGAGAGGCTA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
15 9 0.23
16 5 0.13
17 5 0.13
18 17 0.44
19 3 0.08
ACGTcount: A:0.73, C:0.06, G:0.10, T:0.11
Consensus pattern (18 bp):
AAAATGAAAATCAAGAAT
Found at i:5738989 original size:87 final size:87
Alignment explanation
Indices: 5738838--5739973 Score: 1594
Period size: 87 Copynumber: 13.1 Consensus size: 87
5738828 AGATCAGTGA
* ** * * *
5738838 AGATCGAAAACAAAACCTTGCCTCCATTAGTTGCAATGTAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
5738903 CTTCCTGCATTAATAGCGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
* * *
5738925 AGATTGAAAATAAAGCCTTGCCTCCATCAGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5738990 CTTCCTACGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
*
5739012 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
5739077 CTTCCTACGTTAACAGTGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
* ** * * *
5739099 AGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGAAGCTGGTTAAAGATAGCTGATCTTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739163 CTTCCTGCATTGACAGTGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
** *
5739185 AGATAAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739250 CTTCCTACGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
*
5739272 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
5739337 CTTCCTACGTTAACAGTGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
* ** *
5739359 AGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739423 CTTCCTGCATTGACAGTGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
* * *
5739445 AGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGTTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
5739510 CTTCCTACGTTAACAGCGAAGT
66 CTTCCTGCGTTAACAGTGAAGC
* * * *
5739532 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGTTGGTTAAATATAACAGGTCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739597 CTTCCTGCATTAACAGCGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
* * *
5739619 AGATCGAAAACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739684 CTTCCTGCATTAGCAGTGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
*
5739706 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739771 CTTCCTACGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
* * ** **
5739793 AGATCGAAAACAAAGCCTTTCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGTTGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
5739857 CTTCCTGCATTGACAATGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
* * * **
5739879 AAATCGAAAACAAAGCCTTGCCTCAATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739944 CCTCCTGCGTCAACAGTGAAGC
66 CTTCCTGCGTTAACAGTGAAGC
5739966 AGATCGAA
1 AGATCGAA
5739974 GATTACATAT
Statistics
Matches: 939, Mismatches: 107, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
86 224 0.24
87 715 0.76
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGTGAAGC
Found at i:5739034 original size:43 final size:43
Alignment explanation
Indices: 5738985--5739381 Score: 128
Period size: 45 Copynumber: 9.2 Consensus size: 43
5738975 GATAGCAGAT
*
5738985 CTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
** * * * ** *
5739028 CTTGCC-TCC-ATCGGTT-GTAGTGGAGCTGGTTAAAGATAGCAAA-T
1 CTTGCCTTCCTA-C-GTTAACAGTGAAGCAGATCGAA-A-A-CAAAGC
5739072 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
* * * * *
5739115 CTTGCC-TCC-ATCAG-T-ACAGTGAAGCTGGT--TAAAGATAGC
1 CTTGCCTTCCTA-C-GTTAACAGTGAAGCAGATCGAAAACAAAGC
* * * * ** *
5739154 TGATCTTACCTTCCTGCATTGACAGTGAAGCAGATAAAAAATAAAGC
1 ----CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
** * * * * * * *
5739201 CTTGCC-TCC-ATCGGTT-GTAGTGGAGCTGGT-TAAAGATAGCAGAT
1 CTTGCCTTCCTA-C-GTTAACAGTGAAGCAGATCGAAA-ACA-AAG-C
*
5739245 CTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
** * * * ** *
5739288 CTTGCC-TCC-ATCGGTT-GTAGTGGAGCTGGTTAAAGATAGCAAA-T
1 CTTGCCTTCCTA-C-GTTAACAGTGAAGCAGATCGAA-A-A-CAAAGC
5739332 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
1 CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
5739375 CTTGCCT
1 CTTGCCT
5739382 CCATCAGTAC
Statistics
Matches: 247, Mismatches: 68, Indels: 78
0.63 0.17 0.20
Matches are distributed among these distances:
39 7 0.03
41 18 0.07
42 57 0.23
43 50 0.20
44 38 0.15
45 64 0.26
46 6 0.02
47 7 0.03
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (43 bp):
CTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGC
Found at i:5739338 original size:260 final size:261
Alignment explanation
Indices: 5738838--5739970 Score: 1768
Period size: 260 Copynumber: 4.4 Consensus size: 261
5738828 AGATCAGTGA
* * * * *
5738838 AGATCGAAAACAAAACCTTGCCTCCATTAGTTGCAATGTAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * ** *
5738903 CTTCCTGCATTAATAGCGAAGCAGATTGAAAATAAAGCCTTGCCTCCATCAGTTGTAGTGGAGCT
66 CTTCCTGCATTAACAGTGAAGCAGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
5738968 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
*
5739033 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGCCTTCCTACGTTAACAGTGAAG
196 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGCCTTCCTACATTAACAGTGAAG
5739098 C
261 C
* * *
5739099 AGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGAAGCTGGTTAAAGATAGCTGATCTTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739163 CTTCCTGCATTGACAGTGAAGCAGATAAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTGCATTAACAGTGAAGCAGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
5739228 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
*
5739293 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGCCTTCCTACGTTAACAGTGAAG
196 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGCCTTCCTACATTAACAGTGAAG
5739358 C
261 C
*
5739359 AGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739423 CTTCCTGCATTGACAGTGAAGCAGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGTT
66 CTTCCTGCATTAACAGTGAAGCAGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
*
5739488 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGTAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
* * * ** * *
5739553 CTCCATCGGTTGTAGTGGAGTTGGTTAAATATAACAGGTCTTGCCTTCCTGCATTAACAGCGAAG
196 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGCCTTCCTACATTAACAGTGAAG
5739618 C
261 C
* * ** * *
5739619 AGATCGAAAACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTAC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * * *
5739684 CTTCCTGCATTAGCAGTGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
66 CTTCCTGCATTAACAGTGAAGCAGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
*
5739749 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTTC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
* ** *** * * *
5739814 CTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGTTGATCTTGCCTTCCTGCATTGACAATGAAG
196 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGCCTTCCTACATTAACAGTGAAG
5739878 C
261 C
* *
5739879 AAATCGAAAACAAAGCCTTGCCTCAATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
5739944 CCTCCTGCGTCAACAGTGAAGCAGATC
66 CTTCCTGCATTAACAGTGAAGCAGATC
5739971 GAAGATTACA
Statistics
Matches: 806, Mismatches: 65, Indels: 3
0.92 0.07 0.00
Matches are distributed among these distances:
260 619 0.77
261 187 0.23
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (261 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCATTAACAGTGAAGCAGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGCCTTCCTACATTAACAGTGAAG
C
Found at i:5739493 original size:347 final size:347
Alignment explanation
Indices: 5738838--5739973 Score: 1698
Period size: 347 Copynumber: 3.3 Consensus size: 347
5738828 AGATCAGTGA
* * * *
5738838 AGATCGAAAACAAAACCTTGCCTCCATTAGTTGCAATGTAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * * *
5738903 CTTCCTGCATTAATAGCGAAGCAGATTGAAAATAAAGCCTTGCCTCCATCAGTTGTAGTGGAGCT
66 CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
*
5738968 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGCCTTGC
* *
5739033 CTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAATCTTGCCTTCCTACGTTAACAGTGAAG
196 CTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAG
* *
5739098 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGAAGCTGGTTAAAGATAGCTGATCTTAC
261 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
5739163 CTTCCTGCATTGACAGTGAAGC
326 CTTCCTGCATTGACAGTGAAGC
** * * *
5739185 AGATAAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
5739250 CTTCCTACGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
*
5739315 GGTTAAAGATAGCAAATCTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGCCTTGC
* * * * * *
5739380 CTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCTGATCTTGCCTTCCTGCATTGACAGTGAAG
196 CTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAG
* * * ** * *
5739444 CAGATCAAAAATAAAGCCTTGCCTCCATCGGTTGTAGTGGAGTTGGTTAAAGATAGCAGATCTTG
261 CAGATCGAAAACAAAGCCTTGCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCTGATCTTG
* * * * *
5739509 CCTTCCTACGTTAACAGCGAAGT
325 CCTTCCTGCATTGACAGTGAAGC
* * * * * *
5739532 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGTTGGTTAAATATAACAGGTCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
5739597 CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
* * * * *
5739662 GGTTAAAGATAACAGATCTTACCTTCCTGCATTAGCAGTGAAGCAGATCGAAAACAAAGCCTTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGCCTTGC
*
5739727 CTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGCGAAG
196 CTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAG
* *
5739792 CAGATCGAAAACAAAGCCTTTCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGTTGATCTTGC
261 CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
*
5739857 CTTCCTGCATTGACAATGAAGC
326 CTTCCTGCATTGACAGTGAAGC
* * *
5739879 AAATCGAAAACAAAGCCTTGCCTCAATCAGTTACAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
* * * *
5739944 CCTCCTGCGTCAACAGTGAAGCAGATCGAA
66 CTTCCTGCATTAACAGCGAAGCAGATCGAA
5739974 GATTACATAT
Statistics
Matches: 697, Mismatches: 90, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
346 76 0.11
347 545 0.78
348 76 0.11
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (347 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCT
GGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAGCAGATCGAAAACAAAGCCTTGC
CTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACGTTAACAGTGAAG
CAGATCGAAAACAAAGCCTTGCCTCCATCAGTACAGTGGAGCTGGTTAAAGATAGCTGATCTTGC
CTTCCTGCATTGACAGTGAAGC
Found at i:5739771 original size:44 final size:43
Alignment explanation
Indices: 5738941--5739772 Score: 118
Period size: 45 Copynumber: 19.2 Consensus size: 43
5738931 AAAATAAAGC
* *
5738941 CTTGCCTCCATCAGTTGTAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-CAGAT
* * * * * ** * *
5738985 CTTGCCTTCC-TAC-GTTAACAGCGAAGCAGATCGAA-A-ACAAAGC
1 CTTGCC-TCCAT-CGGTT-GCAGTGGAGCTGGTTAAAGATACAGA-T
* *
5739028 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-CAGAT
* * * * ** * *
5739072 CTTGCCTTCC-TAC-GTTAACAGTGAAGCAGATCGAA-A-ACAAAGC
1 CTTGCC-TCCAT-CGGTT-GCAGTGGAGCTGGTTAAAGATACAGA-T
* * * *
5739115 CTTGCCTCCATCAG-TACAGTGAAGCTGGTTAAAGATAGCTGAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-CAGAT
* * * * * * * * *
5739158 CTTACCTTCC-T-GCATTGACAGTGAAGCAGATAAAAAATAAAG-C
1 CTTGCC-TCCATCG-GTTG-CAGTGGAGCTGGTTAAAGATACAGAT
*
5739201 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-CAGAT
* * * * * ** * *
5739245 CTTGCCTTCC-TAC-GTTAACAGCGAAGCAGATCGAA-A-ACAAAGC
1 CTTGCC-TCCAT-CGGTT-GCAGTGGAGCTGGTTAAAGATACAGA-T
* *
5739288 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAAAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-CAGAT
* * * * ** * *
5739332 CTTGCCTTCC-TAC-GTTAACAGTGAAGCAGATCGAA-A-ACAAAGC
1 CTTGCC-TCCAT-CGGTT-GCAGTGGAGCTGGTTAAAGATACAGA-T
* * *
5739375 CTTGCCTCCATCAG-TACAGTGGAGCTGGTTAAAGATAGCTGAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-CAGAT
* * * * * * * *
5739418 CTTGCCTTCC-T-GCATTGACAGTGAAGCAGATCAAAAATAAAG-C
1 CTTGCC-TCCATCG-GTTG-CAGTGGAGCTGGTTAAAGATACAGAT
* *
5739461 CTTGCCTCCATCGGTTGTAGTGGAGTTGGTTAAAGATAGCAGAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-CAGAT
* * * * ** * *
5739505 CTTGCCTTCC-TAC-GTTAACAGCGAAG-TAGATCGAA-A-ACAAAGC
1 CTTGCC-TCCAT-CGGTT-GCAGTGGAGCT-GGTTAAAGATACAGA-T
* * * *
5739548 CTTGCCTCCATCGGTTGTAGTGGAGTTGGTTAAATATAACAGGT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAT-ACAGAT
* * * * * * ** *
5739592 CTTGCCTTCC-T-GCATTAACAGCGAAGCAGATCGAA-A-ACAAAGT
1 CTTGCC-TCCATCG-GTT-GCAGTGGAGCTGGTTAAAGATACAGA-T
*
5739635 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGAT-ACAGAT
* * * * * ** * *
5739679 CTTACCTTCC-T-GCATTAGCAGTGAAGCAGATCGAA-A-ACAAAGC
1 CTTGCC-TCCATCG-GTT-GCAGTGGAGCTGGTTAAAGATACAGA-T
5739722 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGAT
1 CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATA-CAGAT
5739766 CTTGCCT
1 CTTGCCT
5739773 TCCTACGTTA
Statistics
Matches: 536, Mismatches: 171, Indels: 162
0.62 0.20 0.19
Matches are distributed among these distances:
41 27 0.05
42 141 0.26
43 115 0.21
44 104 0.19
45 149 0.28
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (43 bp):
CTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATACAGAT
Found at i:5741198 original size:101 final size:101
Alignment explanation
Indices: 5741081--5741366 Score: 475
Period size: 101 Copynumber: 2.8 Consensus size: 101
5741071 AAAGTGATGG
*
5741081 TCACGTGTGTAGTACTATGTATAGGCTACTACGTGTATCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGAATGATAGGTCGCATGTGTAGTAC
*
5741146 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
*
5741182 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGAATGATAGGTCGCATGTGTAGTAC
*
5741247 TATGTGAAGGCTACTATGCATACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
* * *
5741283 TCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTATCAGATAGTGAT-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGA-A-TGATAGGTCGCATGTGTAGT
*
5741347 ACTATGTGCATGCTACTATG
64 ACTATGTGCAGGCTACTATG
5741367 TGAATCTGCA
Statistics
Matches: 173, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
101 136 0.79
102 33 0.19
103 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTATCAGAATGATAGGTCGCATGTGTAGTAC
TATGTGCAGGCTACTATGCATACCGGATAGCTTCGA
Found at i:5741200 original size:51 final size:50
Alignment explanation
Indices: 5741081--5741366 Score: 236
Period size: 51 Copynumber: 5.7 Consensus size: 50
5741071 AAAGTGATGG
* ** * * * * * *
5741081 TCACGTGTGTAGTACTATGTATAGGCTACTACGTGTATCAGA-ATGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA-GTTCGA
* *
5741131 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAG-TTCGA
* * * * * * *
5741182 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-ATGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA-GTTCGA
* * * *
5741232 TCGCATGTGTAGTACTATGTGAAGGCTACTATGCATACCGGATAGCTTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAG-TTCGA
* * * * * *
5741283 TCACGTGTGTAGTATTATGTGCAGGCTACTACGTGTATCAGATAGTGAT-GG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGT--TCGA
*
5741334 TCACATGTGTAGTACTATGTGCATGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
5741367 TGAATCTGCA
Statistics
Matches: 185, Mismatches: 44, Indels: 13
0.76 0.18 0.05
Matches are distributed among these distances:
50 75 0.41
51 109 0.59
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTTCGA
Found at i:5741368 original size:26 final size:26
Alignment explanation
Indices: 5741288--5741368 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
5741278 TTCGATCACG
* *
5741288 TGTGTAGTATTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
* * *
5741314 CGTGTA-T-CAGATAGTG-ATGGTCAC-A
1 TGTGTAGTAC-TAT-GTGCATGCT-ACTA
5741339 TGTGTAGTACTATGTGCATGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
5741365 TGTG
1 TGTG
5741369 AATCTGCATC
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
25 17 0.43
26 22 0.55
27 1 0.03
ACGTcount: A:0.23, C:0.14, G:0.27, T:0.36
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCATGCTACTA
Found at i:5741492 original size:42 final size:42
Alignment explanation
Indices: 5741376--5741582 Score: 233
Period size: 43 Copynumber: 4.9 Consensus size: 42
5741366 GTGAATCTGC
*
5741376 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC-CCAT
* * *
5741419 ATCCTT-AACTGTGAAAGG-GGTTGCTATGTGCTGATTCCCCAT
1 ATCATTGAA-TAT-AAAGGTGGTTGCTAAGTGCTGATTCCCCAT
**
5741461 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCTACAGT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCCCA-T
* * * * *
5741504 ATCCTTGACTGTGAAAGG-GGTTGCTATGTGCTGATTCCCCGT
1 ATCATTGAATAT-AAAGGTGGTTGCTAAGTGCTGATTCCCCAT
*
5741546 ATCATTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCC
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCC
5741583 ACCGTGTAAC
Statistics
Matches: 137, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
40 4 0.03
41 24 0.18
42 42 0.31
43 57 0.42
44 10 0.07
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (42 bp):
ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCCCAT
Found at i:5741519 original size:85 final size:85
Alignment explanation
Indices: 5741376--5741584 Score: 366
Period size: 85 Copynumber: 2.5 Consensus size: 85
5741366 GTGAATCTGC
*
5741376 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTAACTGTGAAAGGGGTT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACAGTATCCTTAACTGTGAAAGGGGTT
5741441 GCTATGTGCTGATTCCCCAT
66 GCTATGTGCTGATTCCCCAT
* *
5741461 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCTACAGTATCCTTGACTGTGAAAGGGGTT
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACAGTATCCTTAACTGTGAAAGGGGTT
*
5741526 GCTATGTGCTGATTCCCCGT
66 GCTATGTGCTGATTCCCCAT
*
5741546 ATCATTGATTAT-AAGGTGGTTGCTAAGTGCTGATTCCAC
1 ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCAC
5741585 CGTGTAACGG
Statistics
Matches: 118, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
84 26 0.22
85 92 0.78
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (85 bp):
ATCATTGAATATAAAGGTGGTTGCTAAGTGCTGATTCCACAGTATCCTTAACTGTGAAAGGGGTT
GCTATGTGCTGATTCCCCAT
Found at i:5743392 original size:50 final size:49
Alignment explanation
Indices: 5743237--5743405 Score: 137
Period size: 50 Copynumber: 3.4 Consensus size: 49
5743227 CAGATCGAAG
*
5743237 ACGGTGAATCTTACTTCCCTGGCGATGCAGTGG-ATCAGATTGAAGCTACA
1 ACGGCGAATCTT-CTTCCCTGGCGATGCAGTGGAAT-AGATTGAAGCTACA
** * * * * ** * *
5743287 ACACCAAATCTTGTTCCCTGAC-ATTGCAATTAAAAAGATTGAAG-TCGCA
1 ACGGCGAATCTTCTTCCCTGGCGA-TGCAGTGGAATAGATTGAAGCT-ACA
* * *
5743336 ATGGCGAATCTTACTTCCCTGGCGGTGCAGTGGAATAGATTAAAGCTACA
1 ACGGCGAATCTT-CTTCCCTGGCGATGCAGTGGAATAGATTGAAGCTACA
*
5743386 ACGGCGAATCTTGTTCCCTG
1 ACGGCGAATCTTCTTCCCTG
5743406 ACATTGCAGT
Statistics
Matches: 87, Mismatches: 26, Indels: 13
0.69 0.21 0.10
Matches are distributed among these distances:
48 2 0.02
49 39 0.45
50 45 0.52
51 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (49 bp):
ACGGCGAATCTTCTTCCCTGGCGATGCAGTGGAATAGATTGAAGCTACA
Found at i:5745036 original size:16 final size:16
Alignment explanation
Indices: 5745017--5745049 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
5745007 TATTCTCATT
*
5745017 TTTAGTTATTTTTTTA
1 TTTACTTATTTTTTTA
5745033 TTTACTTATTTTTTTA
1 TTTACTTATTTTTTTA
5745049 T
1 T
5745050 ATTTGTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTACTTATTTTTTTA
Found at i:5746072 original size:6 final size:6
Alignment explanation
Indices: 5746061--5746097 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
5746051 TGGCGACTCC
* *
5746061 CGTTTT CGTTTT CGTTTT CGTTTT CATTTT CATTTT C
1 CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT CGTTTT C
5746098 AAAATCTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.05, C:0.19, G:0.11, T:0.65
Consensus pattern (6 bp):
CGTTTT
Found at i:5747499 original size:106 final size:108
Alignment explanation
Indices: 5747357--5747563 Score: 303
Period size: 109 Copynumber: 1.9 Consensus size: 108
5747347 TGGATTAAGA
*
5747357 TTTAAGAGAATATTTGGCTATTTGGTCAAACG-AAAAAATCGAAACCCAGCACATTAGGGCACG-
1 TTTAAGAGAATATTTGGCTATTTGGTCAAACGAAAAAAATCGAAACCCAACACATTAGGGCACGC
5747420 TTTCCTCAAATTTCCAAACGCAAAATAATGCCTTTCTCTAAAAT
66 TTT-CTCAAATTTCCAAACGCAAAATAATGCCTTTCTCTAAAAT
* *
5747464 TTTAA-AGGATATTTGGCTATTTGGTCGAACGAAAAAAAAATCGAAACCCAACACATTAGGGCAC
1 TTTAAGAGAATATTTGGCTATTTGGTCAAACG--AAAAAAATCGAAACCCAACACATTAGGGCAC
* * * *
5747528 GCTTTCTCGAATTTCTAAATGCAAAATATTGCCTTT
64 GCTTTCTCAAATTTCCAAACGCAAAATAATGCCTTT
5747564 ATTATTTTTT
Statistics
Matches: 89, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
106 24 0.27
107 5 0.06
109 57 0.64
110 3 0.03
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (108 bp):
TTTAAGAGAATATTTGGCTATTTGGTCAAACGAAAAAAATCGAAACCCAACACATTAGGGCACGC
TTTCTCAAATTTCCAAACGCAAAATAATGCCTTTCTCTAAAAT
Found at i:5748353 original size:26 final size:26
Alignment explanation
Indices: 5748291--5748342 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
5748281 TATATGTAAG
5748291 TAAATACTTTAAAATTATTATATAAA
1 TAAATACTTTAAAATTATTATATAAA
5748317 TAAATACTTTAAAATTATTATATAAA
1 TAAATACTTTAAAATTATTATATAAA
5748343 ATATATATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (26 bp):
TAAATACTTTAAAATTATTATATAAA
Found at i:5748606 original size:15 final size:15
Alignment explanation
Indices: 5748586--5748632 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
5748576 ATAAATATAT
* *
5748586 ATAAAAATTATGAAA
1 ATAAAAATAATAAAA
5748601 ATAAAAATAATAAAA
1 ATAAAAATAATAAAA
* *
5748616 ATATATAT-ATAAAA
1 ATAAAAATAATAAAA
5748630 ATA
1 ATA
5748633 TGTGTTTATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 9 0.32
15 19 0.68
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (15 bp):
ATAAAAATAATAAAA
Found at i:5749356 original size:22 final size:22
Alignment explanation
Indices: 5749314--5749356 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
5749304 GAGTCCGGTC
* *
5749314 GGTCGCCGCCGCGTCAGCCGCT
1 GGTCGCCGACGCGGCAGCCGCT
5749336 GGTCGCCGACGACGGCA-CCGC
1 GGTCGCCGACG-CGGCAGCCGC
5749357 CGTCCACGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.09, C:0.44, G:0.37, T:0.09
Consensus pattern (22 bp):
GGTCGCCGACGCGGCAGCCGCT
Found at i:5750809 original size:92 final size:92
Alignment explanation
Indices: 5750708--5750886 Score: 358
Period size: 92 Copynumber: 1.9 Consensus size: 92
5750698 AGTCTAAAGA
5750708 TTTTTTAATTGTATGAATATATCCAATTAAAACAGTGTATCTATTATTTCATTACATGTGTATCT
1 TTTTTTAATTGTATGAATATATCCAATTAAAACAGTGTATCTATTATTTCATTACATGTGTATCT
5750773 TAAAAGGTTTAAAAAATTGGATTAGAT
66 TAAAAGGTTTAAAAAATTGGATTAGAT
5750800 TTTTTTAATTGTATGAATATATCCAATTAAAACAGTGTATCTATTATTTCATTACATGTGTATCT
1 TTTTTTAATTGTATGAATATATCCAATTAAAACAGTGTATCTATTATTTCATTACATGTGTATCT
5750865 TAAAAGGTTTAAAAAATTGGAT
66 TAAAAGGTTTAAAAAATTGGAT
5750887 ATATTCATAC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 87 1.00
ACGTcount: A:0.37, C:0.08, G:0.12, T:0.44
Consensus pattern (92 bp):
TTTTTTAATTGTATGAATATATCCAATTAAAACAGTGTATCTATTATTTCATTACATGTGTATCT
TAAAAGGTTTAAAAAATTGGATTAGAT
Found at i:5751141 original size:20 final size:21
Alignment explanation
Indices: 5751118--5751184 Score: 77
Period size: 20 Copynumber: 3.2 Consensus size: 21
5751108 ATTTTTATCA
5751118 ATTTTAA-ATTTTTTAAATTT
1 ATTTTAATATTTTTTAAATTT
5751138 A-TTTAATATTTTTTAAATTT
1 ATTTTAATATTTTTTAAATTT
**
5751158 -TAATAATATTTTTTAAAATATT
1 ATTTTAATATTTTTT-AAAT-TT
5751180 ATTTT
1 ATTTT
5751185 TAATTTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
19 5 0.13
20 25 0.66
21 4 0.11
22 2 0.05
23 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTAATATTTTTTAAATTT
Found at i:5751152 original size:10 final size:9
Alignment explanation
Indices: 5751119--5751174 Score: 67
Period size: 9 Copynumber: 5.8 Consensus size: 9
5751109 TTTTTATCAA
5751119 TTTTAAATT
1 TTTTAAATT
5751128 TTTTAAATT
1 TTTTAAATT
5751137 TATTTAATATT
1 T-TTTAA-ATT
5751148 TTTTAAATT
1 TTTTAAATT
*
5751157 TTAATAATATT
1 TT-TTAA-ATT
5751168 TTTTAAA
1 TTTTAAA
5751175 ATATTATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 16 0.39
10 16 0.39
11 9 0.22
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTAAATT
Found at i:5751192 original size:32 final size:30
Alignment explanation
Indices: 5751119--5751200 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 30
5751109 TTTTTATCAA
**
5751119 TTTTAAATTTTTTAAATTTATTT--AATATT
1 TTTTAAATTTTAAAAATTT-TTTAAAATATT
5751148 TTTTAAATTTTAATAATATTTTTTAAAATATT
1 TTTTAAATTTTAA-AA-ATTTTTTAAAATATT
*
5751180 ATTTTTAA-TTTAAAAATTTTT
1 -TTTTAAATTTTAAAAATTTTT
5751201 AAGCTTCGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
29 11 0.24
30 11 0.24
31 6 0.13
32 11 0.24
33 6 0.13
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTAAATTTTAAAAATTTTTTAAAATATT
Found at i:5759346 original size:15 final size:15
Alignment explanation
Indices: 5759326--5759355 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
5759316 GAATTCAATA
5759326 ATGCTTAGGGGTAAG
1 ATGCTTAGGGGTAAG
5759341 ATGCTTAGGGGTAAG
1 ATGCTTAGGGGTAAG
5759356 GTCTTTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.40, T:0.27
Consensus pattern (15 bp):
ATGCTTAGGGGTAAG
Found at i:5762560 original size:2 final size:2
Alignment explanation
Indices: 5762555--5762587 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
5762545 CATTAGTTGT
5762555 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5762588 CTTTTTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5763182 original size:107 final size:106
Alignment explanation
Indices: 5762994--5763311 Score: 458
Period size: 107 Copynumber: 3.0 Consensus size: 106
5762984 ACTATTCGAA
5762994 AAGATTTTCTAAATAAGGCAATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTG
1 AAGATTTTCTAAATAAGGCAATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTG
*
5763059 AGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTTT
66 GGTTTCGATTTCTCGTT-GACCAAATAGCCAAATATCCTTTT
* * * ** *
5763101 AAGATTTTCTAAATAAGGCAATGTTTTGCGTTTAGAAATTCGAGAAAATATGCCCTAACGCGCTG
1 AAGATTTTCTAAATAAGGCAATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTG
* * *
5763166 GGTTTCAATTTTTCGTTTGACCAAATAGCTAAAATATCCTTTT
66 GGTTTCGATTTCTCG-TTGACCAAATAGC-CAAATATCCTTTT
* * * *
5763209 AA-AATTTCAAAATAAAGTAATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTG
1 AAGATTTTCTAAATAAGGCAATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTG
*
5763273 GGTCTCGATTTCTCGTTGAACCAAATAGCCAAATATCCT
66 GGTTTCGATTTCTCGTTG-ACCAAATAGCCAAATATCCT
5763312 CCTCTTAAAT
Statistics
Matches: 184, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
106 12 0.07
107 156 0.85
108 16 0.09
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (106 bp):
AAGATTTTCTAAATAAGGCAATATTTCGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTG
GGTTTCGATTTCTCGTTGACCAAATAGCCAAATATCCTTTT
Found at i:5765682 original size:40 final size:40
Alignment explanation
Indices: 5765627--5765706 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
5765617 GACCTTTTCC
5765627 ATAAAAAGCCATTTCATTTACCCTTGGTTTAGAAAATGTT
1 ATAAAAAGCCATTTCATTTACCCTTGGTTTAGAAAATGTT
5765667 ATAAAAAGCCATTTCATTTACCCTTGGTTTAGAAAATGTT
1 ATAAAAAGCCATTTCATTTACCCTTGGTTTAGAAAATGTT
5765707 CTGCTGAAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (40 bp):
ATAAAAAGCCATTTCATTTACCCTTGGTTTAGAAAATGTT
Found at i:5767836 original size:98 final size:98
Alignment explanation
Indices: 5767657--5767853 Score: 342
Period size: 98 Copynumber: 2.0 Consensus size: 98
5767647 ATACAATAAA
*
5767657 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACTATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
5767722 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
*
5767755 ACTTTAAAAGAA-AGTCCGCTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAAT
1 ACTTTAAAAGAACA-TCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAAT
*
5767819 TCCTTTAAAATCTCAAACTCGGAATATTTCCTTT
65 TCCTTTAAAATCCCAAACTCGGAATATTTCCTTT
5767853 A
1 A
5767854 TGATTTTTAA
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
97 1 0.01
98 93 0.99
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Done.