Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 51526817
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.33
Warning! 216316 characters in sequence are not A, C, G, or T
File 24 of 172
Found at i:5768820 original size:3 final size:3
Alignment explanation
Indices: 5768807--5768855 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
5768797 TTGTATGTAC
* * *
5768807 ATA AAA ATA ATA ATT A-A ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5768854 AT
1 AT
5768856 GATGATGATG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
2 1 0.03
3 38 0.97
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:5769419 original size:15 final size:15
Alignment explanation
Indices: 5769401--5769443 Score: 77
Period size: 15 Copynumber: 2.8 Consensus size: 15
5769391 AAATTTTCCT
5769401 TCTCTCTCTTTTCAG
1 TCTCTCTCTTTTCAG
5769416 TCTCTCTCTTTTCAG
1 TCTCTCTCTTTTCAG
5769431 TCTTCTCTCTTTT
1 TC-TCTCTCTTTT
5769444 TACATTACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.05, C:0.33, G:0.05, T:0.58
Consensus pattern (15 bp):
TCTCTCTCTTTTCAG
Found at i:5770186 original size:132 final size:132
Alignment explanation
Indices: 5770006--5771053 Score: 1677
Period size: 132 Copynumber: 8.0 Consensus size: 132
5769996 TTCAATCTAT
* *
5770006 TCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGGAGT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
* * *
5770071 AGAATTACTGGCTTCAATGTACTCCATTATAACCACAGTGAGGTAAAATCCGCCATCTTCGATCT
66 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
5770136 GC
131 GC
5770138 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
*
5770203 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCGCCATCTTCGATCT
66 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
5770268 GC
131 GC
5770270 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
* * *
5770335 AGAATTACTAGCTTCAATGTACTCCACTATAACCACGGGGAGGTAAAATCCGCCATCTTCGATCT
66 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
5770400 GC
131 GC
* * ** *
5770402 TCCATTACTGCTGAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTACCCAGAGAAGT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
* * *
5770467 AGAATTACTAGCTTCAATGTACTCCACTATAACCACAGAGAGGTAAAATCTGCCATCTTTGATCT
66 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
5770532 GC
131 GC
*
5770534 TCCACTACTGCTTAGGGAGGTAAGATCTGAAATCTTCAATCTATTCCACTGTTG-CCTAGGGAAG
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCC-AGGGAAG
* *
5770598 TAGAATTACTGGCTTCAATGTACTCCTCTATAACCACAGGGAGGTAAAATCTGCCATCTCCGATC
65 TAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATC
5770663 TGC
130 TGC
** *
5770666 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTACCCAGAGAAGT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
* * *
5770731 AGAATTATTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGTCATCTTTGATCT
66 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
5770796 GC
131 GC
* *
5770798 TCCACTACTGCTTAGGGAGATAAGATCTAAAATCTTCAATCTATTCCACTGTT-ACCTAGGGAAG
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCC-AGGGAAG
* *
5770862 TAGAATTACTGGCTTCAATGTACTCCTCTATAACCACAGGGAGGTAAAATCTACCATCTTCGATC
65 TAGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATC
5770927 TGC
130 TGC
* * *
5770930 TCCACTACTACTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCGGGGAAGT
1 TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
* * *
5770995 AGAATTACTAGCTTTAA--TA-T--AC--T--CCACAGGGAAGTAAAATCTGCCATCTTCGATCT
66 AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
5771051 GC
131 GC
5771053 T
1 T
5771054 TCGCTGTCAA
Statistics
Matches: 862, Mismatches: 50, Indels: 17
0.93 0.05 0.02
Matches are distributed among these distances:
123 34 0.04
125 1 0.00
127 1 0.00
129 1 0.00
130 2 0.00
131 4 0.00
132 815 0.95
133 4 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
TCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGT
AGAATTACTGGCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCTGCCATCTTCGATCT
GC
Found at i:5770199 original size:44 final size:45
Alignment explanation
Indices: 5769974--5770451 Score: 136
Period size: 44 Copynumber: 10.8 Consensus size: 45
5769964 ACTGCGACTG
* * * *
5769974 CAGGGAGATAAGA-CTTACAATCTTCAATCTATTCCACTAATG-CT
1 CAGGGAGATAAGATCTGA-AATCTTCAATCTACTCCACTATTGTCA
* * *
5770018 TAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTC-
1 CAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCA
* * * ***
5770062 CAGGG-GAGT-AGAATTACTG---GCTTCAATGTACTCCATTATAACCA
1 CAGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTACTCCACTATTGTCA
* * * * ** * * * *
5770106 CAGTGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTG-CT
1 CAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCA
* * *
5770150 TAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTC-
1 CAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCA
* * ***
5770194 CAGGGA-AGT-AGAATTACTG---GCTTCAATGTACTCCACTATAACCA
1 CAGGGAGA-TAAG-A-T-CTGAAATCTTCAATCTACTCCACTATTGTCA
* * * ** * * * *
5770238 CAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTG-CT
1 CAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCA
* * *
5770282 TAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTC-
1 CAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCA
* * * ***
5770326 CAGGGA-AGT-AGAAT-T-ACTAGCTTCAATGTACTCCACTATAACCA
1 CAGGGAGA-TAAG-ATCTGA-AATCTTCAATCTACTCCACTATTGTCA
* * * * ** * * * * *
5770370 CGGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCATTACTG-CT
1 CAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCA
* *
5770414 GAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACT
1 CAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACT
5770452 GTTACCCAGA
Statistics
Matches: 299, Mismatches: 103, Indels: 64
0.64 0.22 0.14
Matches are distributed among these distances:
42 5 0.02
43 64 0.21
44 168 0.56
45 56 0.19
46 6 0.02
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (45 bp):
CAGGGAGATAAGATCTGAAATCTTCAATCTACTCCACTATTGTCA
Found at i:5770582 original size:44 final size:44
Alignment explanation
Indices: 5770125--5770979 Score: 136
Period size: 44 Copynumber: 19.4 Consensus size: 44
5770115 AAAATCCGCC
* * *
5770125 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGAA
* ** * *
5770169 ATCTTCAATCTATTCCACTGTTG-TCCAGGGAAGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCT-TAGGGAGGTAAG-A-T-CTGAA
* * * ** * * **
5770213 -GCTTCAATGTACTCCACTA-TAACCACAGGGAGGTAAAATCCGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGGTAAGATCTGAA
* * *
5770257 ATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGAA
* ** * * *
5770301 ATCTTCAATCTATTCCACTGTTG-TCCAGGGAAGT-AGAAT-T-ACT
1 ATCTTCAATCTACTCCACTACTGCT-TAGGGAGGTAAG-ATCTGA-A
* * * * * * **
5770344 AGCTTCAATGTACTCCACTA-TAAC-CACGGGGAGGTAAAATCCGCC
1 ATCTTCAATCTACTCCACTACT-GCTTA--GGGAGGTAAGATCTGAA
* * * * *
5770389 ATCTTCGATCTGCTCCATTACTGCTGAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGAA
* ** * ** * * *
5770433 ATCTTCAATCTATTCCACTGTTACCCAGAGAAGT-AGAAT-T-ACT
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAG-ATCTGA-A
* * * ** * * **
5770476 AGCTTCAATGTACTCCACTA-TAACCACAGAGAGGTAAAATCTGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGGTAAGATCTGAA
** *
5770521 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGAA
* ** * *
5770565 ATCTTCAATCTATTCCACTGTTGCCTAGGGAAGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAG-A-T-CTGAA
* * * * ** * **
5770609 -GCTTCAATGTACTCCTCTA-TAACCACAGGGAGGTAAAATCTGCC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGGTAAGATCTGAA
* * * *
5770653 ATCTCCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGAA
* ** * ** * *
5770697 ATCTTCAATCTATTCCACTGTTACCCAGAGAAGT-AGAAT-T--A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAG-ATCTGAA
* * * ** * **
5770738 TTGGCTTCAATGTACTCCACTA-TAACCACAGGGAGGTAAAATCTGTC
1 AT--CTTCAATCTACTCCACTACT--GCTTAGGGAGGTAAGATCTGAA
** * * *
5770785 ATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTAAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGAA
* ** * * *
5770829 ATCTTCAATCTATTCCACTGTTACCTAGGGAAGT-AGAATTACTG--
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAG-A-T-CTGAA
* * * * ** * *
5770873 -GCTTCAATGTACTCCTCTA-TAACCACAGGGAGGTAAAATCT-ACC
1 ATCTTCAATCTACTCCACTACT--GCTTAGGGAGGTAAGATCTGA-A
* * * *
5770917 ATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGAA
*
5770961 ATCTTCAATCTATTCCACT
1 ATCTTCAATCTACTCCACT
5770980 GTTGCCCGGG
Statistics
Matches: 551, Mismatches: 196, Indels: 128
0.63 0.22 0.15
Matches are distributed among these distances:
41 2 0.00
42 17 0.03
43 110 0.20
44 307 0.56
45 99 0.18
46 15 0.03
47 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGAA
Found at i:5776146 original size:98 final size:98
Alignment explanation
Indices: 5775972--5776168 Score: 342
Period size: 98 Copynumber: 2.0 Consensus size: 98
5775962 ATACAATAAA
*
5775972 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACTATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
5776037 CCTTTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
**
5776070 ACTTTAAAAGAA-AGTCTGCTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAAT
1 ACTTTAAAAGAACA-TCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAAT
5776134 TCCTTTAAAATCCCAAACTCGGAATATTTCCTTT
65 TCCTTTAAAATCCCAAACTCGGAATATTTCCTTT
5776168 A
1 A
5776169 TGATTTTTAA
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
97 1 0.01
98 93 0.99
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:5776972 original size:25 final size:25
Alignment explanation
Indices: 5776880--5776975 Score: 79
Period size: 25 Copynumber: 3.6 Consensus size: 25
5776870 ATATTAATTG
5776880 AAAAAAAAT-ATAATATGTACATATAT
1 AAAAAAAATGATAATA--TACATATAT
* * *
5776906 ATAAAAAATAATTATATACATATAT
1 AAAAAAAATGATAATATACATATAT
*
5776931 AGATTATAAAAACGATAAT-TACATATAT
1 A-A--A-AAAAATGATAATATACATATAT
5776959 ACAAAAAAATGATAATA
1 A-AAAAAAATGATAATA
5776976 ATTAAATTAA
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
25 21 0.38
26 9 0.16
27 5 0.09
28 12 0.21
29 9 0.16
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.30
Consensus pattern (25 bp):
AAAAAAAATGATAATATACATATAT
Found at i:5777134 original size:3 final size:3
Alignment explanation
Indices: 5777121--5777184 Score: 94
Period size: 3 Copynumber: 21.7 Consensus size: 3
5777111 TTGTATGTAC
* * *
5777121 ATA AAA ATA ATA ATT A-A ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5777168 ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA AT
5777185 GATGAGGAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
2 1 0.02
3 53 0.98
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:5777741 original size:15 final size:15
Alignment explanation
Indices: 5777723--5777765 Score: 77
Period size: 15 Copynumber: 2.8 Consensus size: 15
5777713 AAATTTTCCT
5777723 TCTCTCTCTTTTCAG
1 TCTCTCTCTTTTCAG
5777738 TCTCTCTCTTTTCAG
1 TCTCTCTCTTTTCAG
5777753 TCTTCTCTCTTTT
1 TC-TCTCTCTTTT
5777766 TACATTACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 17 0.63
16 10 0.37
ACGTcount: A:0.05, C:0.33, G:0.05, T:0.58
Consensus pattern (15 bp):
TCTCTCTCTTTTCAG
Found at i:5779070 original size:20 final size:19
Alignment explanation
Indices: 5779032--5779101 Score: 65
Period size: 18 Copynumber: 3.7 Consensus size: 19
5779022 TAATTTTTAA
5779032 TTTTTAAT-TTTT-TAAAT
1 TTTTTAATATTTTATAAAT
*
5779049 TTATTTAATATTTTATATAT
1 TT-TTTAATATTTTATAAAT
*
5779069 TTTAATAATATTTTA-AAAT
1 TTT-TTAATATTTTATAAAT
* *
5779088 TTTATAAAATTTTA
1 TTTTTAATATTTTA
5779102 AAAAATATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
17 2 0.04
18 16 0.36
19 11 0.24
20 16 0.36
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTAATATTTTATAAAT
Found at i:5779129 original size:16 final size:17
Alignment explanation
Indices: 5779103--5779134 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
5779093 AAAATTTTAA
5779103 AAAATATATTATTTTTT
1 AAAATATATTATTTTTT
5779120 AAAA-ATATTATTTTT
1 AAAATATATTATTTTT
5779135 AATTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AAAATATATTATTTTTT
Found at i:5779142 original size:21 final size:22
Alignment explanation
Indices: 5779095--5779146 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
5779085 AATTTTATAA
5779095 AATTTTAAAAA-ATATATTATT
1 AATTTTAAAAATATATATTATT
*
5779116 --TTTTAAAAATAT-TATTTTT
1 AATTTTAAAAATATATATTATT
5779135 AATTTTAAAAAT
1 AATTTTAAAAAT
5779147 TTTTAAGCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 15 0.56
20 2 0.07
21 10 0.37
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
AATTTTAAAAATATATATTATT
Found at i:5779563 original size:165 final size:165
Alignment explanation
Indices: 5779338--5779656 Score: 449
Period size: 165 Copynumber: 1.9 Consensus size: 165
5779328 ATTGTAAAGG
* *
5779338 TCAATATTAGTCAAAGGGCATATTTGGCCAATTTTGTTAGTTCATGGGCTCAATTGGGTGCAAAA
1 TCAACATTAGTCAAAGGGCATATTTGGCCAATTTTGTTAGTTCAAGGGCTCAATTGGGTGCAAAA
* * * ** * *
5779403 AGTTTGCAGGGGCTTAATTGATTTTTTTGAAAAAGTTTGAGGACCACAAATACCATTAAACCCTT
66 AGTTCGCAGGGGCTTAATTGATTTTTTCGAAAAAGTTCGACAACCAAAAATACCATTAAACCCTA
* *
5779468 CTTTAACTATTGATATTTCTTTTTCTAAGTATCGA
131 CTTTAACTATTAATATGTCTTTTTCTAAGTATCGA
* * * * * * *
5779503 TCAACATTAGTTAAAGGGCTTATTTTGTCAGTTTTGTTAGTTTAAGGGCTCAGTTGGGTGCAAAA
1 TCAACATTAGTCAAAGGGCATATTTGGCCAATTTTGTTAGTTCAAGGGCTCAATTGGGTGCAAAA
* * *
5779568 AGTTCGCAGGGGCTTAATTGATTTTTTCGAAAAAGTTCGACAATCAAAAATACCTTTAAGCCCTA
66 AGTTCGCAGGGGCTTAATTGATTTTTTCGAAAAAGTTCGACAACCAAAAATACCATTAAACCCTA
5779633 CTTTAACTATTAATATGTCTTTTT
131 CTTTAACTATTAATATGTCTTTTT
5779657 TAATTAATTT
Statistics
Matches: 133, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
165 133 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.38
Consensus pattern (165 bp):
TCAACATTAGTCAAAGGGCATATTTGGCCAATTTTGTTAGTTCAAGGGCTCAATTGGGTGCAAAA
AGTTCGCAGGGGCTTAATTGATTTTTTCGAAAAAGTTCGACAACCAAAAATACCATTAAACCCTA
CTTTAACTATTAATATGTCTTTTTCTAAGTATCGA
Found at i:5781687 original size:12 final size:12
Alignment explanation
Indices: 5781670--5781694 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5781660 AATTTTTTGG
5781670 ATATAAATATAT
1 ATATAAATATAT
5781682 ATATAAATATAT
1 ATATAAATATAT
5781694 A
1 A
5781695 AAAGAAAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATAAATATAT
Found at i:5786214 original size:144 final size:144
Alignment explanation
Indices: 5785597--5786179 Score: 1058
Period size: 144 Copynumber: 4.0 Consensus size: 144
5785587 AGTCAATGTG
*
5785597 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
5785662 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
5785727 TCTCTCCAACAATA
131 TCTCTCCAACAATA
*
5785741 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
*
5785806 GGGAACCAAATCAATGGATCTATCCCATTCGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
*
5785871 TCTCTCCAAGAATA
131 TCTCTCCAACAATA
*
5785885 GAATTGTTGGTCGAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
*
5785950 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTGATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
* *
5786015 TCTCTCCAGCAATG
131 TCTCTCCAACAATA
* *
5786029 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATATCTGCTCCTTTCG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
5786094 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
*
5786159 TCTCTACAACAATA
131 TCTCTCCAACAATA
*
5786173 GACTTGT
1 GAATTGT
5786180 CGATTCAATA
Statistics
Matches: 422, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 422 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (144 bp):
GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
TCTCTCCAACAATA
Found at i:5786446 original size:144 final size:144
Alignment explanation
Indices: 5786251--5786561 Score: 561
Period size: 144 Copynumber: 2.2 Consensus size: 144
5786241 AACCAACTTC
5786251 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
1 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
* *
5786316 AAATTGACTGGTTCAATCCCTTCTTGTGTTGGTAGTTTATCAAAGATGCTGTACTTAAGCCTTGG
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
5786381 TTCTAATCTATTAA
131 TTCTAATCTATTAA
* *
5786395 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTGACTTCATTGTACCTCTCCCAAAAC
1 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
5786460 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
5786525 TTCTAATCTATTAA
131 TTCTAATCTATTAA
*
5786539 AAGGTTCTA-TCCCAAAAGAAATT
1 AAGGTTCTATTCCC-CAAGAAATT
5786562 GGCAAGCTTT
Statistics
Matches: 160, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 4 0.03
144 156 0.98
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (144 bp):
AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
TTCTAATCTATTAA
Found at i:5790601 original size:7 final size:7
Alignment explanation
Indices: 5790589--5790623 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
5790579 GATTGGTAAA
5790589 TAGTATT
1 TAGTATT
5790596 TAGTATT
1 TAGTATT
5790603 TAGTATT
1 TAGTATT
5790610 TAGTATT
1 TAGTATT
5790617 TAGTATT
1 TAGTATT
5790624 ATGTATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (7 bp):
TAGTATT
Found at i:5791913 original size:21 final size:21
Alignment explanation
Indices: 5791883--5791974 Score: 73
Period size: 22 Copynumber: 4.3 Consensus size: 21
5791873 ACCCTAATCA
* *
5791883 TAACCCTTAACTTAAAAACTC
1 TAACCCTTAAATTAAAAACAC
*
5791904 TAACCTTTAAATTAAAAACAC
1 TAACCCTTAAATTAAAAACAC
*
5791925 TAAACCC-TAAACCTAAAAAC-C
1 T-AACCCTTAAA-TTAAAAACAC
**
5791946 ATAAACCCTTAAGCTAAAAAC-C
1 -T-AACCCTTAAATTAAAAACAC
5791968 TAACCCT
1 TAACCCT
5791975 AGACCCTAAC
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
20 6 0.10
21 25 0.41
22 27 0.44
23 3 0.05
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.23
Consensus pattern (21 bp):
TAACCCTTAAATTAAAAACAC
Found at i:5791941 original size:22 final size:21
Alignment explanation
Indices: 5791916--5792053 Score: 84
Period size: 22 Copynumber: 6.2 Consensus size: 21
5791906 ACCTTTAAAT
5791916 TAAAAACACTAAACCCTAAACC
1 TAAAAAC-CTAAACCCTAAACC
* *
5791938 TAAAAACCATAAACCCTTAAGC
1 TAAAAACC-TAAACCCTAAACC
*
5791960 TAAAAACCT-AACCCTAGACCC
1 TAAAAACCTAAACCCTA-AACC
*
5791981 TAACCATTAACCTAAAACACT-AACC
1 TAA--A--AACCT-AAACCCTAAACC
* * *
5792006 TTAAACCCTAAACTCATAAACC
1 TAAAAACCTAAAC-CCTAAACC
*
5792028 TAAATACCCT-AACCCTAAACCC
1 TAAA-AACCTAAACCCTAAA-CC
5792050 TAAA
1 TAAA
5792054 CCCTTAACCT
Statistics
Matches: 91, Mismatches: 13, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
20 10 0.11
21 17 0.19
22 42 0.46
23 7 0.08
25 10 0.11
27 5 0.05
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (21 bp):
TAAAAACCTAAACCCTAAACC
Found at i:5791983 original size:43 final size:42
Alignment explanation
Indices: 5791884--5792724 Score: 572
Period size: 43 Copynumber: 19.5 Consensus size: 42
5791874 CCCTAATCAT
* * * **
5791884 AACCCTTAACTTAAAAACTCT-AACCTTTAAATTAAAAACACTA
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAAAAC-CTA
* *
5791927 AACCCTAAACCTAAAAACCATAAACCCTTAAGCTAAAAACCT-
1 AACCCT-AACCTAAAAACCCTAAACCCTTAACCTAAAAACCTA
* * * * **
5791969 AACCCTAGACCCT---AACCATTAA-CCTAAAAC-ACTAACCTTA
1 AACCCTA-A-CCTAAAAACCCTAAACCCTTAACCTAAAAACC-TA
* * *
5792009 AACCCTAAACTCATAAA-CCTAAATACCC-TAACCCT-AAACCCTA
1 AACCCTAACCT-AAAAACCCT-AA-ACCCTTAA-CCTAAAAACCTA
* * *
5792052 AACCCTTAACCTAAAAA-CCTTAACCATTAACCTAAGAACCCTA
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAA-AAACCTA
*
5792095 AACCCTTAACCTAAAAACCCT-AACCCTCAACCTAAAAACCTTA
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAAAACC-TA
* * * * *
5792138 AACCCTTAACCTAAAAACCCTACACACTAAACTTAAAACCCTA
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAAAACCTA
* *
5792181 AACCCTTAACCTAAAAATCCT-AACCCTTAACATAAAAACCTTA
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAAAACC-TA
* * * * * *
5792224 AACCCTTAACCAAAAAACCCTATACACTAAACTTAAAACCCTA
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAAAACCTA
* * *
5792267 AACCTTAAATCTAAAAACCCT-AACCCTTAACCTAAAACCCTA
1 AACCCT-AACCTAAAAACCCTAAACCCTTAACCTAAAAACCTA
*** *
5792309 AACCCTTAACCTAAATTTCATAAACCCTTAACCTAAAAACCCT-
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAAAA-CCTA
** ** *
5792352 AACCCTGAACCTAAATTCTATAAACCCTTAATCTAAAAACCCT-
1 AACCCT-AACCTAAAAACCCTAAACCCTTAACCTAAAAA-CCTA
* * *
5792395 AACCCTAAACCTTAACCTAAAAACCTTAACCCTCAACCTAAAAACCCT-
1 AACCCT-AACC-T-A---AAAACCCTAAACCCTTAACCTAAAAA-CCTA
**
5792443 AACCCTTAACCTAAAAACCCTAAATGCTTAACCTAAAAACCCT-
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAAAA-CCTA
*
5792486 AACCCTCAACCTAAAAACCCTAAACCCTTAACATAAAAACTCTA
1 AACCCT-AACCTAAAAACCCTAAACCCTTAACCTAAAAAC-CTA
* * * * *
5792530 CACACTAAACTTAAAACCTTAAACCCTTAACCTAAAAACTCT-
1 AACCCTAACCTAAAAACCCTAAACCCTTAACCTAAAAAC-CTA
* * *
5792572 AACCCTTAACCTAAAAACCTTCAACCCTTAAACTAAAAACCCT-
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAAAA-CCTA
* **
5792615 AACCCTCAACCTAAAAACCTTAAACCCTTAACCTAAATTCCATA
1 AACCCT-AACCTAAAAACCCTAAACCCTTAACCTAAAAACC-TA
* *
5792659 AACCCTTAACCTAAAAACCCT-AACCCTCAACCTAAATACCCTA
1 AACCC-TAACCTAAAAACCCTAAACCCTTAACCTAAA-AACCTA
*
5792702 AACCCTTAACATAAAAACCCTAA
1 AACCC-TAACCTAAAAACCCTAA
5792725 CATAAAGGCT
Statistics
Matches: 653, Mismatches: 99, Indels: 91
0.77 0.12 0.11
Matches are distributed among these distances:
38 7 0.01
39 8 0.01
40 15 0.02
41 9 0.01
42 74 0.11
43 417 0.64
44 87 0.13
45 2 0.00
46 1 0.00
47 1 0.00
48 31 0.05
49 1 0.00
ACGTcount: A:0.45, C:0.33, G:0.01, T:0.21
Consensus pattern (42 bp):
AACCCTAACCTAAAAACCCTAAACCCTTAACCTAAAAACCTA
Found at i:5792042 original size:6 final size:7
Alignment explanation
Indices: 5791919--5792195 Score: 73
Period size: 7 Copynumber: 39.4 Consensus size: 7
5791909 TTTAAATTAA
*
5791919 AAACACT
1 AAACCCT
5791926 AAACCCT
1 AAACCCT
5791933 AAA-CCT
1 AAACCCT
*
5791939 AAAAACCAT
1 --AAACCCT
5791948 AAACCCT
1 AAACCCT
* *
5791955 TAA-GCT
1 AAACCCT
*
5791961 AAAAACCT
1 -AAACCCT
5791969 -AACCCT
1 AAACCCT
*
5791975 AGACCCT
1 AAACCCT
*
5791982 -AACCAT
1 AAACCCT
*
5791988 TAA-CCT
1 AAACCCT
*
5791994 AAAACACT
1 -AAACCCT
*
5792002 -AACCTT
1 AAACCCT
5792008 AAACCCT
1 AAACCCT
*
5792015 AAACTCAT
1 AAAC-CCT
5792023 AAA-CCT
1 AAACCCT
5792029 AAATACCCT
1 -AA-ACCCT
5792038 -AACCCT
1 AAACCCT
5792044 AAACCCT
1 AAACCCT
5792051 AAACCCT
1 AAACCCT
*
5792058 TAA-CCT
1 AAACCCT
*
5792064 AAAAACCT
1 -AAACCCT
* *
5792072 TAACCAT
1 AAACCCT
*
5792079 TAA-CCT
1 AAACCCT
5792085 AAGAACCCT
1 -A-AACCCT
5792094 AAACCCT
1 AAACCCT
*
5792101 TAA-CCT
1 AAACCCT
5792107 AAAAACCCT
1 --AAACCCT
5792116 -AACCCT
1 AAACCCT
*
5792122 CAA-CCT
1 AAACCCT
*
5792128 AAAAACCTT
1 --AAACCCT
5792137 AAACCCT
1 AAACCCT
*
5792144 TAA-CCT
1 AAACCCT
5792150 AAAAACCCT
1 --AAACCCT
* *
5792159 ACACACT
1 AAACCCT
*
5792166 AAA-CTT
1 AAACCCT
5792172 AAAACCCT
1 -AAACCCT
5792180 AAACCCT
1 AAACCCT
*
5792187 TAA-CCT
1 AAACCCT
5792193 AAA
1 AAA
5792196 AATCCTAACC
Statistics
Matches: 197, Mismatches: 41, Indels: 65
0.65 0.14 0.21
Matches are distributed among these distances:
6 53 0.27
7 101 0.51
8 27 0.14
9 16 0.08
ACGTcount: A:0.46, C:0.34, G:0.01, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:5792076 original size:21 final size:21
Alignment explanation
Indices: 5792052--5792725 Score: 559
Period size: 21 Copynumber: 31.1 Consensus size: 21
5792042 CTAAACCCTA
5792052 AACCCTTAACCTAAAAACCTT
1 AACCCTTAACCTAAAAACCTT
* * *
5792073 AACCATTAACCTAAGAACCCTA
1 AACCCTTAACCTAA-AAACCTT
*
5792095 AACCCTTAACCTAAAAACCCT
1 AACCCTTAACCTAAAAACCTT
*
5792116 AACCCTCAACCTAAAAACCTT
1 AACCCTTAACCTAAAAACCTT
*
5792137 AAACCCTTAACCTAAAAACCCT
1 -AACCCTTAACCTAAAAACCTT
* * * * *
5792159 ACACACTAAACTTAAAACCCTA
1 A-ACCCTTAACCTAAAAACCTT
5792181 AACCCTTAACCTAAAAATCC-T
1 AACCCTTAACCTAAAAA-CCTT
*
5792202 AACCCTTAACATAAAAACCTT
1 AACCCTTAACCTAAAAACCTT
* *
5792223 AAACCCTTAACCAAAAAACCCT
1 -AACCCTTAACCTAAAAACCTT
* * * *
5792245 ATACAC-TAAACTTAAAACCCT
1 A-ACCCTTAACCTAAAAACCTT
* * *
5792266 AAACCTTAAATCTAAAAACCCT
1 AACCCTT-AACCTAAAAACCTT
* *
5792288 AACCCTTAACCTAAAACCCTA
1 AACCCTTAACCTAAAAACCTT
** * *
5792309 AACCCTTAACCTAAATTTCATA
1 AACCCTTAACCTAAA-AACCTT
*
5792331 AACCCTTAACCTAAAAACCCT
1 AACCCTTAACCTAAAAACCTT
* **
5792352 AACCCTGAACCT-AAATTCTAT
1 AACCCTTAACCTAAAAACCT-T
*
5792373 AAACCCTTAATCTAAAAACCCTAACCCT
1 -AACCCTTAACCTAAAAA-CCT-----T
*
5792401 AAACCTTAACCTAAAAACCTT
1 AACCCTTAACCTAAAAACCTT
* *
5792422 AACCCTCAACCTAAAAACCCT
1 AACCCTTAACCTAAAAACCTT
*
5792443 AACCCTTAACCTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTT
** *
5792465 AATGCTTAACCTAAAAACCCT
1 AACCCTTAACCTAAAAACCTT
* *
5792486 AACCCTCAACCTAAAAACCCTA
1 AACCCTTAACCTAAAAA-CCTT
*
5792508 AACCCTTAACATAAAAA-CTCT
1 AACCCTTAACCTAAAAACCT-T
* * *
5792529 ACACAC-TAAACTTAAAACCTT
1 A-ACCCTTAACCTAAAAACCTT
5792550 AAACCCTTAACCTAAAAA-CTCT
1 -AACCCTTAACCTAAAAACCT-T
5792572 AACCCTTAACCTAAAAACCTT
1 AACCCTTAACCTAAAAACCTT
* *
5792593 CAACCCTTAAACTAAAAACCCT
1 -AACCCTTAACCTAAAAACCTT
*
5792615 AACCCTCAACCTAAAAACCTT
1 AACCCTTAACCTAAAAACCTT
** *
5792636 AAACCCTTAACCTAAATTCCATA
1 -AACCCTTAACCTAAAAACC-TT
*
5792659 AACCCTTAACCTAAAAACCCT
1 AACCCTTAACCTAAAAACCTT
* * *
5792680 AACCCTCAACCTAAATACCCTA
1 AACCCTTAACCTAAA-AACCTT
* *
5792702 AACCCTTAACATAAAAACCCT
1 AACCCTTAACCTAAAAACCTT
5792723 AAC
1 AAC
5792726 ATAAAGGCTT
Statistics
Matches: 517, Mismatches: 105, Indels: 62
0.76 0.15 0.09
Matches are distributed among these distances:
20 10 0.02
21 241 0.47
22 241 0.47
23 4 0.01
24 2 0.00
26 3 0.01
27 15 0.03
28 1 0.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (21 bp):
AACCCTTAACCTAAAAACCTT
Found at i:5792414 original size:27 final size:27
Alignment explanation
Indices: 5792372--5792454 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
5792362 CTAAATTCTA
*
5792372 TAAACCCTTAATCTAAAAACCCTAACCC
1 TAAA-CCTTAACCTAAAAACCCTAACCC
*
5792400 TAAACCTTAACCTAAAAACCTTAACCC
1 TAAACCTTAACCTAAAAACCCTAACCC
5792427 T----C--AACCTAAAAACCCTAACCC
1 TAAACCTTAACCTAAAAACCCTAACCC
*
5792448 TTAACCT
1 TAAACCT
5792455 AAAAACCCTA
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
21 19 0.40
23 1 0.02
25 1 0.02
27 22 0.47
28 4 0.09
ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22
Consensus pattern (27 bp):
TAAACCTTAACCTAAAAACCCTAACCC
Found at i:5792420 original size:14 final size:14
Alignment explanation
Indices: 5792377--5792425 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
5792367 TTCTATAAAC
*
5792377 CCTTAATCTAAAAA
1 CCTTAACCTAAAAA
*
5792391 CCCTAACCCT--AAA
1 CCTTAA-CCTAAAAA
5792404 CCTTAACCTAAAAA
1 CCTTAACCTAAAAA
5792418 CCTTAACC
1 CCTTAACC
5792426 CTCAACCTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
12 3 0.10
13 8 0.28
14 16 0.55
15 2 0.07
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (14 bp):
CCTTAACCTAAAAA
Found at i:5792725 original size:43 final size:43
Alignment explanation
Indices: 5792044--5792725 Score: 709
Period size: 43 Copynumber: 15.7 Consensus size: 43
5792034 CCCTAACCCT
* *
5792044 AAACCCTAAACCCTTAACCTAAAAACCTTAACCATTAACCTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACCTAA
* *
5792087 GAACCCTAAACCCTTAACCTAAAAACCCTAACCCTCAACCTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACCTAA
* * * *
5792130 AAACCTTAAACCCTTAACCTAAAAACCCTACACAC-TAAACTTA
1 AAACCCTAAACCCTTAACCTAAAAACCCTA-ACCCTTAACCTAA
* *
5792173 AAACCCTAAACCCTTAACCTAAAAATCCTAACCCTTAACATAA
1 AAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACCTAA
* * * * *
5792216 AAACCTTAAACCCTTAACCAAAAAACCCTATACAC-TAAACTTA
1 AAACCCTAAACCCTTAACCTAAAAACCCTA-ACCCTTAACCTAA
*
5792259 AAACCCTAAA-CCTTAAATCTAAAAACCCTAACCCTTAACCT-A
1 AAACCCTAAACCCTT-AACCTAAAAACCCTAACCCTTAACCTAA
*** *
5792301 AAACCCTAAACCCTTAACCTAAATTTCATAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACCTAA
* ** ** *
5792345 AAACCCT-AACCCTGAACCTAAATTCTATAAACCCTTAATCTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACCTAA
* * *
5792388 AAACCCTAACCCTAAACCTTAACCTAAAAACCTTAACCCTCAACCTAA
1 AAACCCT-A----AACCCTTAACCTAAAAACCCTAACCCTTAACCTAA
**
5792436 AAACCCT-AACCCTTAACCTAAAAACCCTAAATGCTTAACCTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACCTAA
* *
5792479 AAACCCT-AACCCTCAACCTAAAAACCCTAAACCCTTAACATAA
1 AAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACCTAA
* * * * * *
5792522 AAACTCTACACAC-TAAACTTAAAACCTTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACCTAA
* * *
5792565 AAACTCT-AACCCTTAACCTAAAAACCTTCAACCCTTAAACTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACCTAA
* *
5792608 AAACCCT-AACCCTCAACCTAAAAACCTTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCT-AACCCTTAACCTAA
** * *
5792651 ATTCCATAAACCCTTAACCTAAAAACCCTAACCCTCAACCTAA
1 AAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACCTAA
* *
5792694 ATACCCTAAACCCTTAACATAAAAACCCTAAC
1 AAACCCTAAACCCTTAACCTAAAAACCCTAAC
5792726 ATAAAGGCTT
Statistics
Matches: 540, Mismatches: 81, Indels: 36
0.82 0.12 0.05
Matches are distributed among these distances:
42 52 0.10
43 418 0.77
44 36 0.07
48 19 0.04
49 15 0.03
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (43 bp):
AAACCCTAAACCCTTAACCTAAAAACCCTAACCCTTAACCTAA
Found at i:5792727 original size:14 final size:15
Alignment explanation
Indices: 5792701--5792730 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
5792691 TAAATACCCT
5792701 AAACCCTTAACATAA
1 AAACCCTTAACATAA
5792716 AAACCC-TAACATAA
1 AAACCCTTAACATAA
5792730 A
1 A
5792731 GGCTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.57, C:0.27, G:0.00, T:0.17
Consensus pattern (15 bp):
AAACCCTTAACATAA
Found at i:5798373 original size:18 final size:18
Alignment explanation
Indices: 5798352--5798406 Score: 74
Period size: 18 Copynumber: 3.0 Consensus size: 18
5798342 ATGTCCTAAA
5798352 ATTAAAATATATTATTAT
1 ATTAAAATATATTATTAT
* * *
5798370 ATTAAAATATTTTTTGTAA
1 ATTAAAATATATTAT-TAT
5798389 ATTAAAATATATTATTAT
1 ATTAAAATATATTATTAT
5798407 TGCATTAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
18 15 0.50
19 15 0.50
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTAAAATATATTATTAT
Found at i:5798394 original size:37 final size:39
Alignment explanation
Indices: 5798350--5798429 Score: 128
Period size: 37 Copynumber: 2.1 Consensus size: 39
5798340 ATATGTCCTA
*
5798350 AAATTAAAATATATTATTA-T-ATTAAAATATTTTTTGT
1 AAATTAAAATATATTATTATTCATTAAAATAATTTTTGT
5798387 AAATTAAAATATATTATTATTGCATTAAAATAATTTTTGT
1 AAATTAAAATATATTATTATT-CATTAAAATAATTTTTGT
5798427 AAA
1 AAA
5798430 CTTGTATAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
37 19 0.49
38 1 0.03
40 19 0.49
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (39 bp):
AAATTAAAATATATTATTATTCATTAAAATAATTTTTGT
Found at i:5798745 original size:21 final size:22
Alignment explanation
Indices: 5798719--5798771 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 22
5798709 ACCCAATAAG
*
5798719 AAATATATAATTATAT-TT-TAA
1 AAATATA-AAATATATGTTCTAA
5798740 AAATATAAAATATATGTTCT-A
1 AAATATAAAATATATGTTCTAA
5798761 AAAT-TAAAATA
1 AAATATAAAATA
5798772 CTTTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 14 0.48
21 14 0.48
22 1 0.03
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (22 bp):
AAATATAAAATATATGTTCTAA
Found at i:5802475 original size:144 final size:144
Alignment explanation
Indices: 5802311--5802605 Score: 502
Period size: 144 Copynumber: 2.0 Consensus size: 144
5802301 AGGCAATGTG
* *
5802311 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAATCAATCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTAGGTCAATTAACCAATCTCCAATCTCTGATCCTTTGG
5802376 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTT-GA
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGGA
*
5802440 GTCTCTCCAACAATA
131 -TCTCTACAACAATA
*
5802455 GAATTGTTGGTCCAATCCCTTCTGCTTTAGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTAGGTCAATTAACCAATCTCCAATCTCTGATCCTTTGG
* *
5802520 GGGAACCAAATCAATGGATCTATCCCATTAGAACTTGGATATTTGAGAAATTTGACTTGTTTGGA
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGGA
*
5802585 TCTCTACAACAGTA
131 TCTCTACAACAATA
*
5802599 GACTTGT
1 GAATTGT
5802606 CGATTCAATA
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
144 140 0.99
145 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (144 bp):
GAATTGTTGGTCCAATCCCTTCTGCTTTAGGTCAATTAACCAATCTCCAATCTCTGATCCTTTGG
GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGGA
TCTCTACAACAATA
Found at i:5802635 original size:144 final size:143
Alignment explanation
Indices: 5802311--5802642 Score: 418
Period size: 144 Copynumber: 2.3 Consensus size: 143
5802301 AGGCAATGTG
* * * * * * *
5802311 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAATCAATCTCCAATCTCTGATCCTTTGG
1 GAATTGTCGATCCAATCCATTCTGCTGT-AGCCAATTAACCAATCTCCAATCTCTGATCCTTTGG
5802376 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
65 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
*
5802441 TCTCTCCAACAATA
130 TCTCTACAACAATA
* * * * * *
5802455 GAATTGTTGGTCCAATCCCTTCTGCTTTAGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTCGATCCAATCCATTCTGCTGTA-GCCAATTAACCAATCTCCAATCTCTGATCCTTTGG
* *
5802520 GGGAACCAAATCAATGGATCTATCCCATTAGAACTTGGATATTTGAGAAATTTGACTTGTTTG-G
65 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
*
5802584 ATCTCTACAACAGTA
130 -TCTCTACAACAATA
* *
5802599 GACTTGTCGATTCAATACCAATTACT-CTGTA-CCAATTAACCAAT
1 GAATTGTCGATCCAAT-CC-ATT-CTGCTGTAGCCAATTAACCAAT
5802643 TTGGAAATTT
Statistics
Matches: 168, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
143 1 0.01
144 157 0.93
145 2 0.01
146 6 0.04
147 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (143 bp):
GAATTGTCGATCCAATCCATTCTGCTGTAGCCAATTAACCAATCTCCAATCTCTGATCCTTTGGG
GGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAGT
CTCTACAACAATA
Found at i:5802900 original size:144 final size:144
Alignment explanation
Indices: 5802678--5803059 Score: 667
Period size: 144 Copynumber: 2.7 Consensus size: 144
5802668 ACCAACTTCA
* *
5802678 AGGTTCAATCCCTTCTTGTGTTGGTAGTTTATCAAAGATGCAGTACTTAAGCCTTGATTCTAATC
1 AGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGTACTTAAGCCTTGCTTCTAATC
5802743 TATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCC
66 TATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCC
5802808 CAAAACAAATTGAC
131 CAAAACAAATTGAC
*
5802822 AGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGTACTCAAGCCTTGCTTCTAATC
1 AGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGTACTTAAGCCTTGCTTCTAATC
* *
5802887 TATTAAAAGGTCCTATTCCCCAAGAAATTTGTGATCTAGCAAATTTAACTTCGTTGTACCTCTCC
66 TATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCC
5802952 CAAAACAAATTGAC
131 CAAAACAAATTGAC
* *
5802966 TGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGTTGCAGTACTTAAGCCTTGCTTCTAATC
1 AGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGTACTTAAGCCTTGCTTCTAATC
* *
5803031 TATTAAAAGGTTCTA-TCCCAAAAGAAATT
66 TATTAAAAGGTCCTATTCCC-CAAGAAATT
5803060 GGCAAGCTTT
Statistics
Matches: 227, Mismatches: 10, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 4 0.02
144 223 0.98
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (144 bp):
AGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGTACTTAAGCCTTGCTTCTAATC
TATTAAAAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCC
CAAAACAAATTGAC
Found at i:5808708 original size:18 final size:17
Alignment explanation
Indices: 5808685--5808737 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 17
5808675 TTGTAAATGG
5808685 TTTTTATTAATTTTTAAT
1 TTTTTA-TAATTTTTAAT
5808703 TTTTTA-AATTTTTTTAAT
1 TTTTTATAA--TTTTTAAT
* *
5808721 ATTTTATAAATTTTAAT
1 TTTTTATAATTTTTAAT
5808738 AATATTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
16 2 0.07
17 7 0.23
18 19 0.63
19 2 0.07
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTATAATTTTTAAT
Found at i:5808730 original size:20 final size:20
Alignment explanation
Indices: 5808695--5808753 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 20
5808685 TTTTTATTAA
5808695 TTTTTAAT-TTTT-TAAATT
1 TTTTTAATATTTTATAAATT
5808713 TTTTTAATATTTTATAAATT
1 TTTTTAATATTTTATAAATT
**
5808733 TTAATAATATTTTA-AAATT
1 TTTTTAATATTTTATAAATT
5808752 TT
1 TT
5808754 ATAAAATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.22
19 11 0.30
20 18 0.49
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTTAATATTTTATAAATT
Found at i:5808739 original size:10 final size:9
Alignment explanation
Indices: 5808686--5808764 Score: 65
Period size: 10 Copynumber: 8.6 Consensus size: 9
5808676 TGTAAATGGT
*
5808686 TTTTATTAA
1 TTTTATAAA
5808695 TTTT-T-AA
1 TTTTATAAA
*
5808702 TTTTTTAAA
1 TTTTATAAA
*
5808711 TTTTTTTAATA
1 -TTTTATAA-A
5808722 TTTTATAAA
1 TTTTATAAA
5808731 TTTTAATAATA
1 TTTT-ATAA-A
5808742 TTTTA-AAA
1 TTTTATAAA
5808750 TTTTATAAAA
1 TTTTAT-AAA
5808760 TTTTA
1 TTTTA
5808765 AAACATATTT
Statistics
Matches: 61, Mismatches: 1, Indels: 15
0.79 0.01 0.19
Matches are distributed among these distances:
7 6 0.10
8 8 0.13
9 13 0.21
10 28 0.46
11 6 0.10
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TTTTATAAA
Found at i:5808748 original size:18 final size:17
Alignment explanation
Indices: 5808693--5808766 Score: 69
Period size: 19 Copynumber: 4.1 Consensus size: 17
5808683 GGTTTTTATT
*
5808693 AATTTT-TAATTTTTTA
1 AATTTTATAATATTTTA
*
5808709 AATTTTTTTAATATTTTATA
1 AA-TTTTATAATA-TTT-TA
5808729 AATTTTAATAATATTTTAA
1 AATTTT-ATAATATTTT-A
*
5808748 AATTTTATAAAATTTTA
1 AATTTTATAATATTTTA
5808765 AA
1 AA
5808767 ACATATTTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
16 2 0.04
17 7 0.14
18 14 0.29
19 17 0.35
20 9 0.18
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AATTTTATAATATTTTA
Found at i:5808767 original size:18 final size:18
Alignment explanation
Indices: 5808693--5808767 Score: 89
Period size: 18 Copynumber: 4.1 Consensus size: 18
5808683 GGTTTTTATT
*
5808693 AATTTT-TAATTTTTTAA
1 AATTTTATAATATTTTAA
* *
5808710 ATTTTTTTAATATTTTATA
1 AATTTTATAATATTTTA-A
5808729 AATTTTAATAATATTTTAA
1 AATTTT-ATAATATTTTAA
*
5808748 AATTTTATAAAATTTTAA
1 AATTTTATAATATTTTAA
5808766 AA
1 AA
5808768 CATATTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
17 5 0.10
18 22 0.44
19 13 0.26
20 10 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AATTTTATAATATTTTAA
Found at i:5812101 original size:3 final size:3
Alignment explanation
Indices: 5812093--5812184 Score: 105
Period size: 3 Copynumber: 29.7 Consensus size: 3
5812083 ATCTAATCCT
*
5812093 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* **
5812141 TTG TTA TTGCA TTTA TTA TTA TTA CTT- TCC TTA TTA TTA TTA TT
1 TTA TTA TT--A -TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT
5812185 TACCCACTTA
Statistics
Matches: 78, Mismatches: 6, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
2 1 0.01
3 71 0.91
4 3 0.04
5 1 0.01
6 2 0.03
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:5812267 original size:23 final size:24
Alignment explanation
Indices: 5812238--5812290 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
5812228 CTAACATATA
**
5812238 TATATATCTACATTTTTA-ATTTT
1 TATATATCTACATACTTATATTTT
* *
5812261 TATATATGTACGTACTTATATTTT
1 TATATATCTACATACTTATATTTT
5812285 TATATA
1 TATATA
5812291 CTTTAATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 14 0.56
24 11 0.44
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.57
Consensus pattern (24 bp):
TATATATCTACATACTTATATTTT
Found at i:5814615 original size:19 final size:18
Alignment explanation
Indices: 5814574--5814616 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
5814564 GTCTCTTTTT
5814574 TGCATTCATTTCATGCATC
1 TGCATTCATTTCATGCA-C
5814593 TGCATTGCATTTCATTGCA-
1 TGCATT-CATTTCA-TGCAC
5814612 TGCAT
1 TGCAT
5814617 CAAATTTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 11 0.50
20 7 0.32
21 4 0.18
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (18 bp):
TGCATTCATTTCATGCAC
Found at i:5816675 original size:10 final size:10
Alignment explanation
Indices: 5816660--5816705 Score: 67
Period size: 10 Copynumber: 4.6 Consensus size: 10
5816650 TCAACAAAAT
5816660 AAAAAATTAA
1 AAAAAATTAA
*
5816670 AAAAAA-TCA
1 AAAAAATTAA
5816679 AAAAAATTAA
1 AAAAAATTAA
5816689 AAAAAATTTAA
1 AAAAAA-TTAA
5816700 AAAAAA
1 AAAAAA
5816706 GAAAAAAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
9 8 0.25
10 14 0.44
11 10 0.31
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (10 bp):
AAAAAATTAA
Found at i:5816682 original size:11 final size:11
Alignment explanation
Indices: 5816660--5816705 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
5816650 TCAACAAAAT
5816660 AAAAAATT-AA
1 AAAAAATTAAA
*
5816670 AAAAAA-T-CA
1 AAAAAATTAAA
5816679 AAAAAATTAAA
1 AAAAAATTAAA
*
5816690 AAAAATTTAAA
1 AAAAAATTAAA
5816701 AAAAA
1 AAAAA
5816706 GAAAAAAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 8 0.26
10 7 0.23
11 16 0.52
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (11 bp):
AAAAAATTAAA
Found at i:5816701 original size:19 final size:19
Alignment explanation
Indices: 5816659--5816703 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
5816649 CTCAACAAAA
5816659 TAAAAAATTAAAAAAAATC
1 TAAAAAATTAAAAAAAATC
* *
5816678 AAAAAAATTAAAAAAAATT
1 TAAAAAATTAAAAAAAATC
5816697 TAAAAAA
1 TAAAAAA
5816704 AAGAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (19 bp):
TAAAAAATTAAAAAAAATC
Found at i:5818904 original size:46 final size:46
Alignment explanation
Indices: 5818798--5831513 Score: 16343
Period size: 46 Copynumber: 278.9 Consensus size: 46
5818788 ACAGACCAAT
* * *
5818798 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGTAGTGG-GGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5818843 GAAGATAGCATATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5818889 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5818935 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5818981 GAAGATAACAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5819027 GAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCAGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5819073 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5819119 GAAGATATCAGATATTATCTTCCTATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5819165 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAACGGAGGGTATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5819211 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGA-GGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5819256 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5819302 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5819348 GAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGTGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5819394 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5819440 GAAGATATCAGATCTTGTCTTTCTGTATTTGGCAGTGAAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5819486 GAAGATAGCAGATCATGTTTTCCTGTATTTGGTAGTGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5819532 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5819578 AAAGATAGCAGATCTTGTCTTCCTGTATGTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5819624 GAAGATATCAGATCTTGTCTTCCTGTATTTCGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5819670 GAAGATAGCAAATCTTCTCTTCCTGTATTTGGCAGGGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5819716 GAAGATAGCGGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5819762 GAAGATAGCAAATCTTGCCTGCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5819808 GAAGATAGGAGATCTTGTGTTCCTGTATTTGG-AGGGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5819853 GAAGATAGCAGATCTTGTCTTCCTTTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5819899 GAAGATATCAGATCTTGTCTTCTTGTATTTGGCAGCAGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5819945 GAAGATAGCAGATCATGTTTTCCTGTATCTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * * *
5819991 GAAGATAGCAGATCTTATCTTCCTATATTTGGTAGTGG-GCGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5820036 GAAGATAGCAGATCTTGTCTACCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5820082 GAAGATAGTAGATCTTATCTTCATGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5820128 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5820174 AAACATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5820220 GAAGATAGCAGATCATGTTTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5820266 GAAGATAGCAGATCTTGTCTTCCTATATTTGGTAGTGG-GGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5820311 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5820357 GAAGATATCTGATATTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5820403 GAAGATAGCAGATCTTATCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5820449 GAAGATGGCAGATCTTGTCTTCCTGTATTTGCCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* ** * *
5820495 GAAGATAGTAGATCTTGTCTTCCTAAATTTGGCAGCAGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** *
5820541 GAAGATATTAGATCTTGTCTTCCTGTATTTGGCAGAGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5820587 GAAGATATCAGATATAGTCTTCCTGTATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5820633 GAAGATAGCAAATCTTGTCTTCCTGTATTTAGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5820679 GAAGATAGCAGATCTTGTCTTCCTCTCTTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5820725 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGCATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** * * *
5820771 GAAGATATTAGATCTTGTCTTCTTGTATTTGGCAGCAGATGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5820817 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5820863 GAAGATAGCAGATCTGGTCTTCCTGTATTTGGCAACGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5820909 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5820955 GAAGATAGCAAATCTTCTCTTCCTATATTTGGCAGGGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5821001 GAAGATAGCGGATCTTGTCTTCCTGTATTTGGCAGGGGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5821047 GAAGATAGGAAATCTTGCCTGCCTGTGTTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5821093 GAAGATAGGAGATCTTGTGTTCCTGTATTTTG-AGCAGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5821138 GAAGATAGGAGATCTTGTCTTCCTGTATTTGGCACCAGAGGGGGTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5821184 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5821230 GAAGATAGCAGATCATATTTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5821276 GAAGATAGCAGATCTTATCTCCCTGTATTTGGTAGTGG-GGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *** * *
5821321 GAAGATAGCAGATCTTGTCTTTCTGTATTTGGAAATAGACGGTATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** * * * *
5821367 GAAGATAATAGATCTTATCTTCATGTATTTGGCAGTGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5821413 GAGGATTGCAGATCTTGTCTTCCTATATTTGGCAGTGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5821459 GAAGGTAACAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5821505 GAAGATAGCAGATCTTGTCTTCCTGTATTTTGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5821551 GAAGATATCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5821597 GAAGATAGCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5821643 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5821689 GAAGATAGGAAATCTTGCCTGCCTGTGTTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5821735 GAAGATAGGAGATCTTGTGTTCCTGTATTTTG-AGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5821780 GAAGATAGGAGATCTTGTCTTCCTGTATTTGGCACCAGAGGGGGTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5821826 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5821872 GAAGATAGCAGATCATATTTTTCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5821918 GAAGATAGCAGATCTTATCTCCCTGTATTTGGTAGTGG-GGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *** * *
5821963 GAAGATAGCAGATCTTGTCTTTCTGTATTTGGAAATAGACGGTATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** * * * *
5822009 GAAGATAATAGATCTTATCTTCATGTATTTGGCAGTGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5822055 GAGGATTGCAGATCTTGTCTTCCTATATTTGGCAGTGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5822101 GAAGGTAACAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5822147 GAAGATAGCAGATCTTGTCTTCCTGTATTTTGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5822193 GAAGATATCAGATCTTATCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5822239 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5822285 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5822331 GAAGATATCAGATCTTGTCTTCCTGAAATTGGCAGCGAAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5822377 GAAGATAGCAAATCTTCTCTTCCTGTATTTGGCAGGGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5822423 GAAGATAGCGGATCTTGTCTTCCTGTATTTGGCAGGGGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5822469 GAAGATAGGAAATCTTGCCTGCCTGTGTTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5822515 TAAGATAGGAGATCTTGTGTTCCTGTATTTAG-AGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5822560 GAAGATAGGAGATCTTGTCTTCCTGTATTTGGCACCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5822606 GAAGATATCAGATCTTGTCTTCCTGTCTTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5822652 GAAGATAGCAGATCATATTTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5822698 GAAGATAGCAGATCTTATCTCCCTGTATTTGGTAGTGGA-GGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * ** * *
5822743 GAAGATAGCAGATCTTGTCTTTCTGCATTTGGCAGTAGACGGTATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** * * *
5822789 GAAGATAATAGATCTTATCTTCATGTATTTGGCAGTGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5822835 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5822881 GAAGATAACAGATCTTATCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
**
5822927 GAAGATAGCAGATCTTGTCTTCCTGTATTTTACAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5822973 GAAGATATCAGATCTTATCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5823019 GAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5823065 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGAGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * ** * *
5823111 GAAGATATCAGATCTTGTCTTCCTGAAATTGGCAGCAAAAGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** *
5823157 GAAGATATTAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5823203 GAAGATATCAGATCTTGTATTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * ***
5823249 GAGGGTAGCAGGTCTTGTCTTCCTGTATTTGGCAGTGGAACAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5823295 GAAGGTAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** *
5823341 GAAGATATTAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5823387 GAAGATAGCAGATCTTGTCTTCCTGTATTTGACAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5823433 GAAGATAGC-GATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5823478 GAAGATAGTAAATCTTGTCTTCCTGTATTTGTCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5823524 AAAGATAGTAGATCATGTTTTCCTGTATTTGGCAGCAGA-GGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5823569 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAACAGAGGGG-TGC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGAT-C
** * * * *
5823615 GAAGATAGTTGATCTTATCTTCATGTCTTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5823661 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGTTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * **
5823707 GAAAATAACAGATCTTGCCTTCCTGTATCTGGCAGCGGAGAAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5823753 AAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5823799 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5823845 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5823891 GAAGATATCAGATCTTGTCTTCCTGTATTTGGGAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5823937 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAAAGACCTGTATTTGGCAGC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC---G----G-A--GGGGATC
* ** * ** * *
5823993 GGAGGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCTGCGGAGGAGATC
1 -GAAGATAGC--AG--ATC---TTGT--CTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5824049 GAAGATAGCAAATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * **
5824095 GAAGATAACAGATCTTGTCTTCCTGTATTTGGAAGCAAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
**
5824141 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5824187 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** *
5824233 GAAGATAGCAGATCTTGTCTTTTTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5824279 GAAGATTGTAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** *
5824325 GAAGATTTCAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5824371 GAAGATAACAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5824417 GAAGATAGGAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGTTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5824463 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5824509 GAAGATATCTGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5824555 GAAGATGGCAGATCTTGTCTTCCTGTATTTGCCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5824601 GAAGATAGAAGATCTTGTCTTCTTGAATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5824647 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5824693 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5824739 AAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5824785 GAAGATAGCAGATCTTGTCTTCCTGTCTTTGGCAGCGGATGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5824831 GAAGATATCAGATCTTGTCTTCCTGTATTTGCCAGCGGTGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5824877 GAGGATACCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5824923 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5824969 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGAGTTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5825015 GAGGATAGCAGATC-TGATCTTCCTGTATATGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTG-TCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5825061 GATGATAACAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5825107 GAAGATAGCAGTTCTTGTCTTCCTGTATCTT-GCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTAT-TTGGCAGCGGAGGGGATC
* * **
5825153 GAAGATAGCAAATCTTGTCTTCCTATATTTGGCAGCGGAATGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5825199 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * * *
5825245 GAAGATATCAGATCATGTCTTCCTGTATTTGGTAGCGAAGGAGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5825291 AAAGATAGCAGATCATGTTTTCCTATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5825337 --AGATAGAACAGATCTTGTCTTTCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAG--CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* **
5825383 GAAGATAACAGATCTTGTCTTCCTGTATTTGGCAGCAAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5825429 GAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGTGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5825475 GAAGATAGCAGACCTTGTCTTCCTGTATTTGGCAGCAGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5825521 AAAGACAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5825567 GAAGACATCAGATCTTGTCTTCCTGTATTTGGCAGAGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * ***
5825613 GAAGAGAGCAAATCTTGTCTTCCTATATTTGGCAATAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5825659 GAATATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG-GGGATC
* * * * *
5825706 GAAGATATCAGATCTTGTCTTTCTGTATTTGGCAGCGAAGGAGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5825752 GAAGACAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5825798 GAAGATAGCAGAT-TCGGTCTTCCTGTATTTGGCAACGAAGGGGATC
1 GAAGATAGCAGATCT-TGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* ** *
5825844 GACGATAATAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5825890 GAAGATAGCAGATCTTGTCTTTCTGTATTTGGCAGCAGAGGAGTTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5825936 GAAGATAGCAGATCTGGTCTTCCTGTATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5825982 GACGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA-GGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5826027 GAAGATAGCAGTTCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5826073 GAAGATAGCA-ATATTCTCTTCCTATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5826118 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5826164 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGAGGA--AGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5826208 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** * *
5826254 GAAGATAGCAGATCTTGTCTTCCTAAAATTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5826300 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5826346 GAAGATATCAGATCTTGTCTTCCTG-AATTGGCAGCGAAAGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
**
5826391 GAAGA-ATTAGATCTTGTCTTCCTGTATTT-GCAGCAGGA-GGGAT-
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC-GGAGGGGATC
* *
5826434 GAAGA-A-TAGATCTTGT-TTCCTGTATTTGGCAGTGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* **
5826477 GAAG-TAGCAGATCTTGTCTTCCTGTA-TTGGCA-TGGA-CAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5826519 -AAGGTACCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5826564 GAAGATATCAGGTCTTATCTTCTTGTATTTGGCAGCGGAGGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5826610 GAAGATAGGAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5826656 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5826702 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5826748 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5826794 AAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** * * * * *
5826840 GAAGATATTAGATCTTGTCTTCCTGAAATTGGCAGCGAAAGGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** *
5826886 GAAGATATTAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5826932 GAAGATATCAGATCTTGTATTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * * ***
5826978 GAGGGTAGCAGGTCTTGTCTTTCTGTATTT-GCAGTGGAACAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5827023 GAAGGTAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** * * *
5827069 GAAGATATTAGATCTTGTCTTCTTATATTTGGCAGCGGAGGGGATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5827115 GAAGATAGCAGATCTTGTCTTCCTGTATTTGACAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5827161 GAAGATAGCGGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5827207 GAAGATAGTAAATCTTGTCTTCCTGTATTTGTCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5827253 AAAGATAGTAGATCATGTTTTCCTGTATTTGGCAGCAGA-GGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5827298 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAACAGAGGGG-TGC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGAT-C
* ** * * * *
5827344 GATGATAGTTGATCTTATCTTCATGTCTTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5827390 GAGGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGTTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * **
5827436 GAAAATAACAGATCTTGCCTTCCTGTATCTGGCAGCGGAGAAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5827482 GAAGATAGTAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5827528 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCTGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5827574 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGTGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5827620 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5827666 GAAGATATCAGATCTTGTCTT--TGTATTTGG-AGCGGA-GGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5827708 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCA-CGAAGACCTGTATTTGGCAGC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG--GA---G-----GGGATC
* ** * * *
5827763 GGAGGGGACGAAGATACAGATT-TGCTT-CTGTATTTGGCTGCGGAGGAGATC
1 -GAAGATA-GCAGAT-C---TTGT-CTTCCTGTATTTGGCAGCGGAGGGGATC
*
5827814 GAAGATAGCAGATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * **
5827860 GAAGATAACAGATCTTGTCTTCCTGTATTTGGAAGCAAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
**
5827906 GAAGATAGCAGATCTTGTCTTCCTGTATTTGG-AGCAAAGGGGAT-
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5827950 GAAGATAGCAGAT-TTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* ** *
5827995 G-AGATAGTAGATCTTGTCTTTTTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5828040 GAAGATTGTAGATATTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** * *
5828086 GAAGATTTCAGATCTTGTCTTCTTGTATTTTGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * ** *
5828132 GAAGATAACAGATCTCGTCTTCTTGTATTTCACAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5828178 GAAGATAGGAGATCTTGTCTTCCTGTATTTAGCAGCAGAGGGG-TC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5828223 GAAGATAGCAGATC-TGTCTTCCTGT-TTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5828267 GAAGATATC-GATC-TGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5828311 GAAGATGGCAGATCTTGTCTTCCTGTATTTGGCAGCGTAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5828357 GAAGATAGAAGATCTTGTCTTCTTGAATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5828403 GAAGATATCAGATCTTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATC-TTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5828450 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGGGATC
* * *
5828497 AAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5828543 GAAGATAGCAGATCTTGTCTTCCAGTCTTTGGCAGCGGATGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5828589 GAAGATATCAGATCTTGTCTTCCTGTATTTGCCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5828635 GAGGATACCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5828681 GAAGATATG-AGATCTTGTCTTCCTGTATTTGGCAGCGGAAGAGGATC
1 GAAGATA-GCAGATCTTGTCTTCCTGTATTTGGCAGCGG-AGGGGATC
* ***
5828728 GAAGATAGCAGAT-TTGTCTTCCTGTATTTGGCAGCAGAGGATTTC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5828773 -AGGATAGCAG-TC-TGATCTTCC-GTATATGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTG-TCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5828816 G-AGATA-CAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5828860 GAAGATAGCAGTTCTTGTCTTCCTGTATCTT-GCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTAT-TTGGCAGCGGAGGGGATC
* * * **
5828906 GAAGATAGCAAATCTTGTCTTCCTATATTTGGCAGTGGAATGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5828952 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5828998 GAAGATATCAGATCATGTCTTCCTGTATTTGGCAGCGAAGGAGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5829044 AAAGATAGCAGATCATGTTTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * ** * *
5829090 GGAGAGAATAGATCTTGTCTTCCTATATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5829136 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5829182 GAAGATAGCAGATCTTGTCTTCCTATATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5829228 GAAGATAGCAGACCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5829274 AAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5829320 GAAGACATCAGATCTTGTCTTCCTGTATTTGGCAGAGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * ***
5829366 GAAGAGAGCAAATCTTGTCTTCTTATATTTGGCAATAGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5829412 GAATG-TAGCAGATCTTGTCTTCCTGTAATTGGCAGCGGAGGAGATC
1 GAA-GATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * *
5829458 AAAGACAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGA-GGGATT
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5829503 GAAGATATCAGATC-TGTCTTCCTGTATTTGG-AGC-GAGAGAATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5829546 -AAGATAG-AGATC-TGTTTTCCTGTATTTGGCA--GAAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** *
5829587 GAAGA-AATAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5829632 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGC---GGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5829675 --AGATAGCAGA--TTGTCTCCCTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5829717 GAAGA-AGCAGATCTTGTCTTCCTGTA-TTGGCAGCGGA-GGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5829760 GAAGAT---AGATGCTTGTCTTCCTGTA-TTGGCAGCAG-GGGGATC
1 GAAGATAGCAGAT-CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5829802 GAAGATAGCAAATCTTGTCTTCCTATATTTGG-A--AGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5829845 GAA-AT-GC-GATCTTGTCTTCCTGTATTTGGCAG-AGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5829887 GAAGATAGGAAGATCTTG-C-TCCTGTGTTTGGCAGCGGAGGGGATC
1 GAAGATA-GCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5829932 GAAGATAG-AGATCTTGTGTTTCCTGTATTTTGGCAGC-AAGGGAATC
1 GAAGATAGCAGATCTTGT-CTTCCTGTA-TTTGGCAGCGGAGGGGATC
* *
5829978 GAAGATAAG-AGATCTTGTCTTCCTGTATTTGGCA-CAGAGGGGGATT
1 GAAGAT-AGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA-GGGGATC
*
5830024 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAG-GGA-GGGAT-
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5830067 GAAGATA-CAGATCTTTTTTTCCTGTATTTGGCAGCGGAGAGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5830112 GAAGATATCAGAT-TCTGTCTTCTCTGTATTT-G--GCGGA-GGGATC
1 GAAGATAGCAGATCT-TGTCTTC-CTGTATTTGGCAGCGGAGGGGATC
5830155 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA-GGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5830200 G-AGATAGCAGA-CTTGTCTT-CTGTATTTGGCAGCGGAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5830243 -AAGAGTAG-A-TTCTTGTCTTCCTGTATTTGGCAGC-GA-GGGATC
1 GAAGA-TAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5830285 GAAGATATCAGATCTTGTCTTCCTGTA-TTGGCAGAGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
**
5830330 GAAGA-A-CAGATCTTGTCTTCCTGTATTTGGCA-AAG-GGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5830372 G-A-ATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAGA-GGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5830415 GAAGATAG-A-ATC-TG-CTGTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCT-TCCTGTATTTGGCAGCGGAGGGGATC
* * *
5830458 G-AGATA--A-AT-TTGT-TTCCT-AATTTTG-AGCAGA-GGGAT-
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5830494 GAAGATA--AGA-CTTGT-TTCCTGTATTTGGCA-CAGAGGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGA-GGGGATC
*
5830536 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGA-GGGA-C
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* * * * *
5830580 GAAGATAGCAGATCAT-T-TTCCTGTATTTGGCAGCGAAGAGAATG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5830624 GAAGATA-CAGATCTTGTCTT--TGTATTTTCGGCAGCGGAGGAGGA-C
1 GAAGATAGCAGATCTTGTCTTCCTGTA-TTT-GGCAGCGGAGG-GGATC
* *
5830669 GAAGATAGGAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGA-A
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5830714 GAAGATAGCAGATC-TGTCTTCCTG-ATTTGGCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5830758 GAAGATATCTGATCTTGTCTTCCTGTATTTGGCAGC-GAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5830803 GAAGATAGCAGATCTT-TC-TCCTGTA-TTGGCAGC-GAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
*
5830845 GAAGATAG-AGATCTTGTCTTCTCTG-ATTTGGCAGCGGAGGGAATC
1 GAAGATAGCAGATCTTGTCTTC-CTGTATTTGGCAGCGGAGGGGATC
*
5830890 GAAGATA-TAGATCTTGTCTTCCTGTATTT-GCAGCGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
** *
5830934 GAAGATATAAGATCTT-TCTTCCTGTATTTGGCAG-GCGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCG-GAGGGGATC
* *
5830979 -AAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGAAGGAGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5831024 GAAGATA-CAGATCTTGTC-TCCATG--TTTGGCAGCGGGAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCC-TGTATTTGGCAGC-GGAGGGGATC
*
5831068 GAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGC-GAGGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5831113 GAGGATA-CAGATCTTGTCTTCCTGTAATTTGGCAGCGGAGGGGAAC
1 GAAGATAGCAGATCTTGTCTTCCTGT-ATTTGGCAGCGGAGGGGATC
* *
5831159 GAAGATATG-AGA-CTTTGTCTT-CTGTATTTGGCAGCGGAAGAGATC
1 GAAGATA-GCAGATC-TTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5831204 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCA-CGGA---G-TC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5831245 GAGGAATAGAAGATCTTGATCTTCCTGTATTTGGCAGCGGAGGGGATC
1 GAAG-ATAGCAGATCTTG-TCTTCCTGTATTTGGCAGCGGAGGGGATC
* * *
5831293 GATGA-AACAGATTCTTGTCTTCCTGTATTTGGCAGCGAAGGGGATC
1 GAAGATAGCAGA-TCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5831339 GAAAGATAGCA-ATGTCTTGTCTTCCTGTATTT-G-AGCGGAGGGGATC
1 G-AAGATAGCAGA--TCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5831385 GAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGCGGAAGGGATC
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
5831431 GAAGATAG-AGATCTTGTCTTCCTGTATTTGGCAGC-GAGGGGAT-
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
* *
5831474 GAAGATATCAGATC-TGTCTTCCTGTA-TTGGCAGCGAAGGG
1 GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGG
5831514 ATTANNNNNN
Statistics
Matches: 11050, Mismatches: 1365, Indels: 514
0.85 0.11 0.04
Matches are distributed among these distances:
36 1 0.00
37 11 0.00
38 15 0.00
39 35 0.00
40 26 0.00
41 89 0.01
42 337 0.03
43 375 0.03
44 543 0.05
45 1183 0.11
46 8079 0.73
47 219 0.02
48 38 0.00
49 6 0.00
50 4 0.00
51 6 0.00
53 2 0.00
54 1 0.00
55 9 0.00
56 12 0.00
57 10 0.00
58 2 0.00
59 5 0.00
60 12 0.00
61 10 0.00
63 1 0.00
64 2 0.00
66 17 0.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (46 bp):
GAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATC
Found at i:5824018 original size:66 final size:66
Alignment explanation
Indices: 5823912--5824035 Score: 230
Period size: 66 Copynumber: 1.9 Consensus size: 66
5823902 ATCTTGTCTT
*
5823912 CCTGTATTTGGGAGCGGAGGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAAAG
1 CCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAAAG
5823977 A
66 A
*
5823978 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGC
1 CCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGC
5824036 TGCGGAGGAG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 56 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.30
Consensus pattern (66 bp):
CCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAAAG
A
Found at i:5824064 original size:112 final size:112
Alignment explanation
Indices: 5823866--5824084 Score: 393
Period size: 112 Copynumber: 2.0 Consensus size: 112
5823856 ATCTTGTCTT
*
5823866 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGGAGCGGAG
1 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG
* *
5823931 GGGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCAAAGA
66 GAGATCGAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGCAAAGA
*
5823978 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCTGCGGAG
1 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG
*
5824043 GAGATCGAAGATAGCAAATCTTGTCTTCTTGTATTTGGCAGC
66 GAGATCGAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGC
5824085 GGAGGGGATC
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
112 102 1.00
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (112 bp):
CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG
GAGATCGAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGCAAAGA
Found at i:5824108 original size:158 final size:158
Alignment explanation
Indices: 5823820--5824134 Score: 540
Period size: 158 Copynumber: 2.0 Consensus size: 158
5823810 ATCTTGTCTT
5823820 CCTGTATTTGGCAGCGGAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG
1 CCTGTATTTGGCAGCGGAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG
* * * * *
5823885 GGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGGAGCGGAGGGGATCGAAGATAGCAGAT
66 GAGATCGAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAACAGAT
*
5823950 CTTGTCTTCCTGTATTTGGCAGCAAAGA
131 CTTGTCTTCCTGTATTTGGAAGCAAAGA
* * *
5823978 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTCCTGTATTTGGCTGCGGAG
1 CCTGTATTTGGCAGCGGAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG
*
5824043 GAGATCGAAGATAGCAAATCTTGTCTTCTTGTATTTGGCAGCGGAGGGGATCGAAGATAACAGAT
66 GAGATCGAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAACAGAT
5824108 CTTGTCTTCCTGTATTTGGAAGCAAAG
131 CTTGTCTTCCTGTATTTGGAAGCAAAG
5824135 GGGATCGAAG
Statistics
Matches: 147, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
158 147 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (158 bp):
CCTGTATTTGGCAGCGGAGGAGATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAG
GAGATCGAAGATAGCAAATCTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAACAGAT
CTTGTCTTCCTGTATTTGGAAGCAAAGA
Found at i:5827827 original size:106 final size:107
Alignment explanation
Indices: 5827641--5827847 Score: 341
Period size: 106 Copynumber: 1.9 Consensus size: 107
5827631 ATCTTGTCTT
5827641 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTTGTATTTGGAGCGGAGGGA
1 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTTGTATTTGGAGCGGAGGGA
5827706 TCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCACGAAGA
66 TCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCACGAAGA
*
5827748 CCTGTATTTGGCAGCGGAGGGGA-CGAAGATA-CAGAT-TTG-CTTCTGTATTTGGCTGCGGAGG
1 CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTT-TGTATTTGG-AGCGGAGG
*
5827809 AGATCGAAGATAGCAGATCTTGTCTTCTTGTATTTGGCA
64 -GATCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCA
5827848 GCGGAGGGGA
Statistics
Matches: 95, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
103 3 0.03
104 12 0.13
105 12 0.13
106 45 0.47
107 23 0.24
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (107 bp):
CCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGATCTTGTCTTTGTATTTGGAGCGGAGGGA
TCGAAGATAGCAGATCTTGTCTTCCTGTATTTGGCACGAAGA
Found at i:5849454 original size:46 final size:46
Alignment explanation
Indices: 5833609--5849477 Score: 18350
Period size: 46 Copynumber: 347.3 Consensus size: 46
5833599 ACTTCGCCTT
* *
5833609 CAAAT-CAGGAAGACAAGATCTACTATCTT---TCCTACATCCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCC--CCT-CCGCTGC
* *
5833654 CAAATACAGGAAGACAAGATCTCCTATCTTCGAT-CCCTTCGCTGCC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTG-C
* *
5833700 CAAAT-CAGGAAGACAAGATCTGCATAT-TTCGATCCCTTTC-CTGC
1 CAAATACAGGAAGACAAGATCTGC-TATCTTCGATCCCCTCCGCTGC
*
5833744 CAAATACAGGAAGACAAGATCTGCCTATCTTTCGATTCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTG-CTATC-TTCGATCCCCTCCGCTGC
* *
5833792 TCAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTTC-CTG-
1 -CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5833837 CAAATACAGGAAGAACAAGATCTGCTATCTCTCGATTCCCT-CGCTGC
1 CAAATACAGGAAG-ACAAGATCTGCTATCT-TCGATCCCCTCCGCTGC
* * *
5833884 CAAATACAGGAAGACAAGATCTG-TATCTTCGAT-CCTTCTGCTCC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5833928 CAAATACA-GAAG-CGAAAGATCTGCTATCTTC-ATCTCCTCCGCTGC
1 CAAATACAGGAAGAC--AAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5833973 CAAATA-AGG-AG--AAGATCTGCTAT-TTCGATCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5834014 CAAATACAGGAAGACAAGATCT-CTATCTTCGATCCCCTCC-CTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5834058 CAAATACAGGAAGACAAGATCT--TATCTTCGATCCCCTCCG-TGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5834101 CAAATACAGG-AGACAAGATCTGCTATCTTCGATTCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGA-TCCCCTCCGCTGC
5834147 CAAATACAGGAAAGACCAAGATCTGACTATCTTCTTGATCCCCTCCGCTGC
1 CAAATACAGG-AAGA-CAAGATCTG-CTATCTTC--GATCCCCTCCGCTGC
*
5834198 CAAATACAGGAAGACAAGATCTG--ATCTTCGATCCCTCTCTAGCTG-
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCC-CTC-CGCTGC
* *
5834243 CAAATACAGGAAGACAAGATCTGCTAT-TCTCGATCTCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCT-TCGATCCCCTCCGCTGC
* *
5834289 CAAATACAGGAAAAC-AGATCTGCTATCTTCGATCCCTTCCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCT-CCGCTGC
*
5834335 CAAATACAGGAAGACAAGATCTG-TATCTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5834380 C-AATACAGGAAGAAAAGATC-GCTATCTTCGAT-CTCTCCGTCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG-CTGC
*
5834424 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATC-CCCTCCGCTGC
*
5834471 CAAATACAGGAAGACAAGATCTGACTATCTTCGAT--CCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTG-CTATCTTCGATCCCCTCCGCTGC
*
5834516 C-AATAAAGGAAGACAAGATCTG-TATCTTCGATCCCTCTCCGCT--
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCC-CTCCGCTGC
*
5834559 -AAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCT-C-ATGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5834602 CAAATCACA-GAATCGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAAT-ACAGGAA--GACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5834649 CAAATACAAGGAAGACAAGATCT-CTA--TTCGAT-CCCTCCGCTGC
1 CAAATAC-AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5834692 CAAATACAGGAA-ACAAGATCTGCTATCTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5834737 CAAATACAGGAAGACAAGATCTG-TATCTTCGATTCCCCTCCGCT-C
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGA-TCCCCTCCGCTGC
*
5834782 AAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCC-CTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5834827 CAAAT-CAGGAAG-CAAGATCTGCGATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5834871 CAAATACAAGAAGACAAGATCTGCTATCTTCGATTCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5834917 CAAATACA-GAAGACAAGATCTGATCATCTACGATCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCT-ATCTTCGATCCCCTCCGCTGC
* *
5834963 CAAATACAGGAAGACAAGATCTGATATCTTTCGATCTCCTCCG-TGC
1 CAAATACAGGAAGACAAGATCTGCTATC-TTCGATCCCCTCCGCTGC
*
5835009 GCAAATACAGGGAAGACAAGATCTGACTATCTTCTGATCCCTTCCTGTCTGC
1 -CAAATACA-GGAAGACAAGATCTG-CTATCTTC-GATCCCCTCC-G-CTGC
5835061 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCC-CCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATC-CCCTCCGCTGC
*
5835107 CAAATACAGG-A-AC-AGATCTGCTCATCTTTTTGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCT-ATC--TTCGATCCCCTCCGCTGC
5835153 CAAATACA-GAAGACAAGATCTGCTATCTTCGAT-CCC-CC-CTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5835195 CAAATACA-GAAG--AAGAT-TG-TATCTTAGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5835235 C-TATACAGGAAGACAAGATCTGATATCTTCGATCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5835280 CAAATACAGAGAAAGACAAGATCTGCT-TCTTCGATCTCCT-CGCTGC
1 CAAATACAG-G-AAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * *
5835326 CAAATA-AAGAAGACAAGATTCTACT-TCTTCGATCCTCTGCGGCGGC
1 CAAATACAGGAAGACAAGA-TCTGCTATCTTCGATCCCCT-CCGCTGC
* ** *
5835372 CTGAATACAGGAAGACAAGATCTGCTAACTCTCATATTTATCTCCTTCTCGCTGC
1 C-AAATACAGGAAGACAAGATCTGCT-A---TC-T-TCGATC-CCCTC-CGCTGC
*
5835427 CAAATACAGG-AGACAAGATTTTGCTATCTTCTGAT-CCCTCC-CTG-
1 CAAATACAGGAAGACAAGA-TCTGCTATCTTC-GATCCCCTCCGCTGC
5835471 CAAATACAGGAAGACAAGA-CT-CATCATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGC-T-ATCTTCGATCCCCTCCGCTGC
*
5835516 CAAATAACAGGAAG-CAAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAAT-ACAGGAAGAC-AAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5835563 CAAATACAGGAAGACAAGATCTGTTAT-TTCGATCCCCTCC-CTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5835607 CAAATAAAGGAAGACAAGATCTGCTATTCTTCGAT-CCC-CCTCTGC
1 CAAATACAGGAAGACAAGATCTGCTA-TCTTCGATCCCCTCCGCTGC
*
5835652 CAAATACAGGAAGACAAGACTCTGATAATCTTCGATCCCCT-CGCTGC
1 CAAATACAGGAAGACAAGA-TCTGCT-ATCTTCGATCCCCTCCGCTGC
* *
5835699 CAAATATA-GAAGACAAGATCTGCATATCTTCGAT-CTCTCCGCATGC
1 CAAATACAGGAAGACAAGATCTGC-TATCTTCGATCCCCTCCGC-TGC
*
5835745 CAAATACAGGAAAACAAGATCTGCTATCTTCGATTCCCCT-C-CTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGA-TCCCCTCCGCTGC
* * * * * *
5835790 CAATAAACCGAAAAGACAAGAATCTTTTCTTGATATTCTCTCGATCCCATTCGCTGC
1 CAA-ATACAG-GAAGACAAG-A-----TC-TGCTA-TCT-TCGATCCCCTCCGCTGC
* *
5835847 CAAATACAGGAAGACAAGATCTTGCTATCTTCGATCTCCT-CGCAGC
1 CAAATACAGGAAGACAAGATC-TGCTATCTTCGATCCCCTCCGCTGC
* *
5835893 CAAATACAGGAAAGACAAGATCTGATATCTTCGA-CTCCCTTCGTCTG-
1 CAAATACAGG-AAGACAAGATCTGCTATCTTCGATC-CCCTCCG-CTGC
5835940 CAAATACAGGAAGACAAGATCTGCTATCTTCGTATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCG-ATCCCCTCCGCTGC
* *
5835987 CAAATACAGGAAGAC-AGATCTGATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5836032 CAAATACA-GAAGAACAAGATCGGGTGC-ATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAG-ACAAGATC---TGCTATCTTCGATCCCCTCCGCTGC
* *
5836080 CAAATACAGGAAGACAAGATCTGATATCTTCGATTCCCTCTCG-TGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTC-CGCTGC
*
5836126 CCAATACAGGGAAGACAAGAACTCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACA-GGAAGACAAG-A-TCTGCTATCTTCGATCCCCTCCGCTGC
*
5836175 CAAATACAGGAAGACAAGATCTGAT-TC-TCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5836218 CAAATACA-GAAGACAAGATCTGCTATCTTC-AACCCCTCCACT--
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5836260 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5836305 CAAATACAAGGAAAGAC-AGATCT-CTATCTT-G-T--CCTCC-CTTGC
1 CAAATAC-AGG-AAGACAAGATCTGCTATCTTCGATCCCCTCCGC-TGC
*
5836347 GCAAAAACAGGAAGACAAGAATCTTGCTATTCTTCGAT-CCCTCTCG-TGC
1 -CAAATACAGGAAGACAAG-ATC-TGCTA-TCTTCGATCCCCTC-CGCTGC
5836396 CAAATACAGGAAGACAAAGATCTGACTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGAC-AAGATCTG-CTATCTTCGATCCCCTCCGCTGC
** *
5836444 CAAATACAGGAAGACAAAGA-CTTATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGAC-AAGATCTGCTATCTTCGATCCCCTCCGCTGC
5836490 CAAATACAGGAAGACAAGATCTG-TATCTTCGATCTCCCTCCGCTG-
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATC-CCCTCCGCTGC
5836535 CAAATACA-GAAGACAAGATCTGACTATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTG-CTATCTTCGATCCCCTCCGCTGC
* **
5836580 C-AATACATAGAAGACAAGATCTGCTATCTTCGAT-TTCT-C-CT-C
1 CAAATACA-GGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5836622 CAACTACAAAGAGAAGACAAGATCTGCTAT-TTCGATCCCTCTCCGCTGC
1 CAAATAC--AG-GAAGACAAGATCTGCTATCTTCGATCCC-CTCCGCTGC
5836671 CAAATACAGGAAGACAAGATCTGC-ATCTT--ATCCTCCCTCC-CTGCC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-C-CCCTCCGCTG-C
*
5836716 CAAATACAGGAAGACAAGATCTACTATCTTCGATCCCCTCTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTC-CGCTGC
*
5836763 CAAAT-CAGGAAGACAAGATCT-CTTATCTTGCGATCCCTTCTCGCTGC
1 CAAATACAGGAAGACAAGATCTGC-TATCTT-CGATCCCCTC-CGCTGC
5836810 C--ATACAGGAAGGACAAGATCTG-TATCTATCGATCCCCT-CGCTGC
1 CAAATACAGGAA-GACAAGATCTGCTATCT-TCGATCCCCTCCGCTGC
* *
5836854 CAAATA-AGGAAGACAAGATCTGCT-TC-T-GATTCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5836896 ACAAATACAGGAAGACAAGATCTGCTAT-TTCGATCCCCT-TGCTGC
1 -CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5836941 CAAATACAGGAAGACAAGA-CTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5836985 CAAATTA-AGG-AGAC-AGATCTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAA-TACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5837028 CAAATACAGGAAGA-AAGATTCTGCTATCTTCGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGA-TCTGCTATCTTCGATCCCCTCCGCTGC
*
5837073 CAAATACAGGAAGACAAGATCTGCTATCTTCGAGTCTCAACTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGA-TC-C-CCTCCGCTGC
* * *
5837122 CAAATACAGGAAGACAAGATCT-CTAGCTTCGATCCTCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
** * *
5837167 CAAATACAGG-AGACAGAGCAGATTCTATCTTCGATCCTCT-CGCTGC
1 CAAATACAGGAAGACA-AG-ATCTGCTATCTTCGATCCCCTCCGCTGC
*
5837213 CAAATACA-GAAGACAAGATCTGCTATTCTTCGATTCCCT-CGCTGC
1 CAAATACAGGAAGACAAGATCTGCTA-TCTTCGATCCCCTCCGCTGC
5837258 C-AATACA-GAAGAC--GATTCTGCTATCTTCGAT-CCC-CCG-TCGC
1 CAAATACAGGAAGACAAGA-TCTGCTATCTTCGATCCCCTCCGCT-GC
*
5837299 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* ** *
5837345 CAAATACAGGAAGACAAGATCCGTGAC-ATCTTTGATTTCTTCCG-T--
1 CAAATACAGGAAGACAAGAT-C-TG-CTATCTTCGATCCCCTCCGCTGC
* * ** * **
5837390 C----ACACG-AGTCGAATGATCT-C-ATCTTC--TCTACT-TG-TAT
1 CAAATACAGGAAGAC-AA-GATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5837427 CAGAA-A-A-TAAGACGAATTCGTATCAT-CTTAGTCTGTCACAATCACCCT---CTG-
1 CA-AATACAGGAAGAC-AA---G-ATC-TGC-TA-TCT-T--CGATC-CCCTCCGCTGC
* * * **
5837478 CTAGTATA-GACAG-CTATCA-CT-CTAATC--C-ATTACCCCTCCTAGGCCTGC
1 CAAATACAGGA-AGAC-AAGATCTGCT-ATCTTCGA-T-CCCCTCC---G-CTGC
** * * * *
5837526 C-AATCCACTCTCGATACGCAACAAAGATCTGTGAAGCTAT-TAATC-ATACCATCTG-TGAT
1 CAAAT--A--CAGGA-A-G--AC-AAGATC--T---GCTATCT--TCGATCCCCTCCGCTG-C
** * * * * * * * * *
5837585 C-TTTCCACGAA-TC-AGATCT--TA-CCTCGCT-ACTTACCATCAG-
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCT-CC-GCTGC
* * * *
5837625 C-AATAGACGG-AGACAGCTGCTCTGATGCGTCTTGCATTCTCGAT-CCCTCCGCTGC
1 CAAATACA-GGAAGACA--AGATC---TGC-T-AT-C--T-TCGATCCCCTCCGCTGC
** * * * *
5837680 CAAATACAGGAAGAC--GATCATAATCATCCCTCTCACATGTCTCTCCTCCTGCC
1 CAAATACAGGAAGACAAGATC-TGCT-AT--CT-TC-GAT-CCCCTCC-GCTG-C
* * * ** ** * * **
5837733 CATATTCA-AAATTCTCGCATCAGTCGGC-A-CTTCAGATCACGTTAGTCTGC
1 CAAATACAGGAAGACAAG-ATC--T--GCTATCTTC-GATCCCCTCCG-CTGC
5837783 C--A-AC---AAGAC-AGAT-TGTCTATCTT-GATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTG-CTATCTTCGATCCCCTCCGCTGC
5837821 CAAATACAGGAAGAC-AGAATCTGCATATCTCTCGAT--CCTCCGCTGC
1 CAAATACAGGAAGACAAG-ATCTGC-TATCT-TCGATCCCCTCCGCTGC
5837867 CAAA-ATCAGGAAGACAAGATCTGCTATCTTCGAGTCCCCT---CTGC
1 CAAATA-CAGGAAGACAAGATCTGCTATCTTCGA-TCCCCTCCGCTGC
*
5837911 CAAATACAGGAAGAGTCAAGATTTGCTATCTTCGA-CTCCCTCCGCTGC
1 CAAATACAGGAAGA--CAAGATCTGCTATCTTCGATC-CCCTCCGCTGC
* *
5837959 ACATATACAGGAAGACAAGATCTGCT-TCTTC-ATCCCCGTCCACTGC
1 -CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCC-TCCGCTGC
*
5838005 C-AATATCAGGAAGACAAGATCTGCTATCTTCGATCTCCTACCGCTGGC
1 CAAATA-CAGGAAGACAAGATCTGCTATCTTCGATCCCCT-CCGCT-GC
* * * *
5838053 CAAATATAAGGAAAGACAAGATCTGCTATCGTTCGATCTCCTTCTGCAGC
1 CAAATA-CAGG-AAGACAAGATCTGCTATC-TTCGATC-CCCTCCGCTGC
* *
5838103 CAAA-ACACAGAAGACAAGATCTGCTATACTTCGAT-CCCT--TCTGC
1 CAAATACA-GGAAGACAAGATCTGCTAT-CTTCGATCCCCTCCGCTGC
* * *
5838147 CAAATACA-GAAGACAAGATCTACTA-CTGCGATCTCCTCCGCTGCCC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTG--C
* * * ** * * * * * *
5838193 CGGCAATCAATCA-TACG-CTGGCTCAAGACCAT-ATCGATCGCACTTCGACT-C
1 C--AAAT--A-CAGGAAGACAAGATC-TG-CTATCTTCGATC-CCCTCCG-CTGC
* * ** ** * * * * * ** * * *
5838244 TCGGGCAATGCCCCG-ATTCTA-CTCCGTCACAGCTTCGAT-ATCTTCGATCC
1 -C---AAAT-ACAGGAAGACAAGATCTG-C-TATCTTCGATCCCCTCCGCTGC
*** * * * * * * * * * *** *
5838294 CCTCTGCCA--AATACAGGAAGACAGAT-TCTGCAATCTACGATCCCT-C
1 CAAAT-ACAGGAAGACAAG-A-TCTGCTATCTTCGATC-CCCTCCGCTGC
*** * * * * *
5838340 CGCTTGCCA-AAACAAGGAAGACAAGATCTGCTATCTTCGATCTCCTCC-CTGC
1 CAAAT-ACAGGAA-GAC------AAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5838392 CAAATACAGAAAGACAAG-TCTTGCTAT-TTCGATCCCTCTCCGCTGGC
1 CAAATACAGGAAGACAAGATC-TGCTATCTTCGATCCC-CTCCGCT-GC
5838439 CAAATACAGGAAGACAAGATCTGCTATCTTCGATTCCCCTCCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGA-TCCCCTCC-GCTGC
* *
5838487 CAAATA-AGGAAGACAAGATCT-ATATCTTCGATCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5838531 CAAATACTAGGAAGACAAGATCTGCTATCTTC-ATCTCCCTTTCGCTGC
1 CAAATAC-AGGAAGACAAGATCTGCTATCTTCGATC-CCC-TCCGCTGC
*
5838579 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCT-CGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5838624 CAAATA-AGGAAGACCAAGATCTGCTCTTCTT-GATCCCCTCC-CTGC
1 CAAATACAGGAAGA-CAAGATCTGCT-ATCTTCGATCCCCTCCGCTGC
*
5838669 CAAATACAGGAAGACAAGATCTGCTATTCTTCGATTCTCCCT-TGCT-C
1 CAAATACAGGAAGACAAGATCTGCTA-TCTTCGA-TC-CCCTCCGCTGC
5838716 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5838762 C-AATATAGGAAGACAAAGATCTGCTATCTTCCGATCCCCT-TGCTGC
1 CAAATACAGGAAGAC-AAGATCTGCTATCTT-CGATCCCCTCCGCTGC
*
5838808 C-AATA-AGGAAGACAAGATCTTGCTATCTTCGCT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATC-TGCTATCTTCGATCCCCTCCGCTGC
*
5838852 CAGAAT--AGGAAGA-AAGATCTGCTATCTTCGAT-CTC-CCGCTGC
1 CA-AATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5838894 CAAATACAAGGAAGACAAGATCTG-AATCTTCGAT-CCCTCCGCTGCAC
1 CAAATAC-AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTG--C
* * *
5838941 CAAATATAGGAAGACAAGATCAGATATCTTCGAT---CT-CGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5838983 C-AATACAGGAAGACCAAGATCCT-CTATCTTCGAATCCCCTCCGCTGC
1 CAAATACAGGAAGA-CAAGAT-CTGCTATCTTCG-ATCCCCTCCGCTGC
5839030 CAAATA-A-GAAGACAA-ATCTGCTATCTTCGATCCCCTCCGACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCG-CTGC
* *
5839074 CAAATACAGGAAGACAAGATCTG-TATCTTCGATCTCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5839119 CAAATACAAGGAA-ACAAGATCT-CTATATCTTTCGATCCCCTTCG-T-C
1 CAAATAC-AGGAAGACAAGATCTGC--TATC-TTCGATCCCCTCCGCTGC
* * *
5839165 CAAATACAGGAAAGACAAGATCTATCTAACCTCGAT--CCTCCGCCTG-
1 CAAATACAGG-AAGACAAGATCT-GCTATCTTCGATCCCCTCCG-CTGC
* *
5839211 CAAATACAAGAA-ACAAGATCTGCTATACTT-GATTCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTAT-CTTCGA-TCCCCTCCGCTGC
*
5839257 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5839302 C-AATACAGGAA-ACAAGATCTGCTATCTTCGATCCTCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5839346 CAAATA-AGGAAGACAAATGATTCTGCTATCTTCGAT-CCCTCTCGCTGC
1 CAAATACAGGAAGAC-AA-GA-TCTGCTATCTTCGATCCCCTC-CGCTGC
* *
5839394 AAAATACAGGAAGACAAGATCTGCTATCTTCGATATCCCTCCGCTGTC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCCTCCGCTG-C
*
5839442 CAAATACAGG-AGA-AAGATCTGCTTATTCTT--TTCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGC-TA-TCTTCGATCCCCTCCGCTGC
*** * *
5839486 CAAATACAGGAAGACAAGATCAAATATCTTCGATGCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5839532 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCC-TCCGCTGC
*
5839579 CAAAATACAGGAAGAACAAGATTCTACTATCTTCGATCCCCT-CGCTGC
1 C-AAATACAGGAAG-ACAAGA-TCTGCTATCTTCGATCCCCTCCGCTGC
** *
5839627 CAAATTACAGGAAGACAAGATCTGCTATCTTTTTATTCCCCTTCGCTGC
1 CAAA-TACAGGAAGACAAGATCTGCTATC-TTCGA-TCCCCTCCGCTGC
* *
5839676 CAAATACAAGGAAGACAAGATCTGATATC-TCTGATCCTCT-CGCTGC
1 CAAATAC-AGGAAGACAAGATCTGCTATCTTC-GATCCCCTCCGCTGC
5839722 CAAATACATGTGAAGTTACAAGATCTGCTATCTTCTTCGAT-CCCT-CGCTGC
1 CAAATACA-G-GAAG--ACAAGATCTGCTA---TCTTCGATCCCCTCCGCTGC
*
5839773 CAAATACA-GAAGACAAGATCTGCTATCTTCGATCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5839818 CAAA-ACAGGAAGACAAGATCTGCTATCTT--ATCTCCCTCC-CTGTT
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATC-CCCTCCGCTG-C
* * *
5839862 CAAAAACAGGAAGACAAGATCT--TATTTTCGATTCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5839906 CAAATAACAGAGAAGACAAGATCTGCTATCATCGATCCCCTCCGCTAC
1 CAAAT-ACAG-GAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5839954 C-AATACAGGAAGACAAGATCTTGATATCTTCGATTCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATC-TGCTATCTTCGATCCCCTCCGCTGC
*
5840000 CCAATACAGGAAGACAAGATCT-CTAT-TCTCGATCCCCTCCGCT-C
1 CAAATACAGGAAGACAAGATCTGCTATCT-TCGATCCCCTCCGCTGC
* *
5840044 CAAA-ATCAGGAAGACAAGATCTTTGCTATCTTCGATCTCCTATCGCCTGC
1 CAAATA-CAGGAAGACAAGATC--TGCTATCTTCGATCCCCT-CCG-CTGC
* * * *
5840094 TAAATACAGGAAGATAAGATCTGTTATCTTCGATCCCCTTCCCGCTAC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCC-T-CCGCTGC
* * * *
5840142 C--ATACAGGAAGACGAAAACTCTACT-TC-TCGATCTCCTTCGCTTGC
1 CAAATACAGGAAGAC-AAGA-TCTGCTATCTTCGATCCCCTCCGC-TGC
* * * * * *
5840187 CAAATAAATGAAGGA-AAGATTTACTATCTTCGTTTCTCCTCCGCTGC
1 CAAATACAGGAA-GACAAGATCTGCTATCTTCG-ATCCCCTCCGCTGC
5840234 C-AATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5840279 CAAATACAGGAAGACAAGATCTGCTATCTTC-ATCTCCT-CACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5840323 CAAA-ACA-GAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCT-C
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5840365 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5840410 CAAATACAGGAAGACAAGATCTGCTATTTTCGATCCCCT-CGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5840455 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5840501 CAAATAAAGGAAGACAAGATCTGCTATCTTCGATCCTCTCTGCGGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5840547 CAAATAGAGGAAGACAAGATCTGCTATCTTTGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5840593 CAAATACAGGAAGACAAGATCTGATATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5840638 CAAATACAGGAAGA-AAGATCTGCTATCTT--AT-CCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5840680 CAAATACAGGAAGACAAGATCTGATATCTTCGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5840725 CAAATACAGGAAGACAAG--CTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5840769 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5840815 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5840860 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCC-TCCGCTGC
* *
5840907 CAAATACAGGAAAACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5840953 CAAATACAAGAAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5840999 CAAATACAGGAAGACAAGATCTGCTATCTTTGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5841045 CAAATACAGGAAGACAAGATCTGCTAT-TTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5841090 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5841136 CAAATACA-GAAGACAAGATCTGATATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5841180 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5841225 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5841271 CAAATAAAGGAAGACAAGATCTGCTATCTTCGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5841316 C-AAT-TAGGAAGACAAGATCTGCTATTTTCGATCCCTTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5841360 CAAATACAGGAAGACAAGATCTACTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5841406 CAAATACAGGAAGACAAGAT-TCGATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCT-GCTATCTTCGATCCCCTCCGCTGC
* * *
5841452 CAAATACAGGAAGACAAGATCTACTATTTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5841498 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5841544 CAATATA-A-GAAGACAAGATCTGATATCTTCGATCCCCTCCGCTGC
1 CAA-ATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5841589 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCTTCTGCTG-
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5841634 CAAATACAGGAAAACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5841680 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5841726 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5841772 CAAATACAGGAAGACAAGATCTGATATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5841817 CAAATATAGGAAGACAAGATCTGCTATCTTTGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5841862 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5841907 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5841953 CAAATACAGGAATG-CAA-ATCTACTATCTTCGATCCCCACCGCTTC
1 CAAATACAGGAA-GACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5841998 TAAATACATGAAGACAAGAT-TGATATCTTCGATCCCCT-CACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5842042 C-AATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5842087 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5842133 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT--CCT-CGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5842176 C-AA-ACA--AA-A-AAGATCTGATATCTT-GATCCCCTCCGCT--
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5842213 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCT-CGCTTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGC-TGC
*
5842258 CAAATACAGGAAGACAAGATCTGCTATCTT-GATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5842303 CAAATACA-GAAGACAAGATC-ACTATCTTCGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5842346 CAAAT--AGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5842389 CAAATACAGGAAGAGAAGATCTGCTATCTTCGAT-CCCTCC-TTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5842433 CAAATA-AGGAAGACAAGATCTGCTATCTTCGA-CCCCTTCCGCATG-
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCC-TCCGC-TGC
5842478 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5842523 CATATACAAGAACACAAGATCTGCTATCTTCGATCCCCTCC-CAGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5842568 CAAATA-AGAAAGA-AAGATCTGC-ATCTTCGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5842610 CAAATACAGGAAGACAAGATCTGATATCTTCGATCTCCT-CGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5842655 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCT--GCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5842698 CAAATACAGGAAGACAAGAT-TG-TATCTTCGAT-CCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5842741 C-AATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5842786 CAAATACAGGAAGATAAGATCTGATATCTTCGATCCCTTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5842832 CAAATACAGGAAAACAAGATCTGCTATCTTCGATCCTCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5842878 CAAATACAGGAAG--AAGATCTGAT-TCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5842921 C-AATACAGGAAGACAAGATCTGCTATCTTCGTTCTCCT-CGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5842965 CAAATACAGGAAGACAAGATCT-ATATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843010 CAAATACAGGAAGACAAGATCTACTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843056 CAAATACAGGAAGACAAGATCTG--ATATTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843100 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843146 CAAATACAGGAAGACAAGATCTGCTATCTTCGAT-CCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843191 CAAATACAGGAAGACAAGATCTGATATCTTCG-T-CCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843235 CAAAT-CAGGAAGACAAGATCTGCTATCTTCGAT--CCTCCTCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843278 CAAATACAGGAAGACAAGATCTGC-ATCTTCGAT-CTCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5843322 CAAA-A-AGGAAGACAAGATCTGCTATCTTCGATCTCCTCTGC-G-
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5843364 CAAACAAAAGGAA-ACAAGATCTGATATCTTCGAT-CCCT-C-C-GC
1 CAAA-TACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5843406 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843452 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5843498 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5843544 CAAATAGATGAAGACAAGATCTGCTATCTTAGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843590 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843636 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5843682 CAAATACAGGAAGATAAGATCTGCTATCTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * **
5843728 CAAATAAAAGAAG-CAAGATCTGATATCTTCGATCCCCTCCGCTAT
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5843773 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5843819 CAAATAAAGAAAGACAAGATCTGCTATATTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * * * *
5843865 CATATACAAGAACACAAGATCTGATATCTTTGATCCCCTCTGC-AC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5843910 CAAATACAGAAAGACAAGATCTACAATCTTCGATCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5843956 CAAATACA-AAATGACAAGATCTGATATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAA-GACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5844002 CAAATACAGGAAGACAAGAT-TCGATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCT-GCTATCTTCGATCCCCTCCGCTGC
* *
5844048 CAAATACAGGAAGGCAAGATCTGCTATCTTCGATCCCCTCCGCCGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5844094 CAAATACAGGAAGACAAGATCTACTATTTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5844140 CGAATACAGGAAGACAAGATCTGCTATCTTTGATCCCCTCCTCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5844186 AAAATACAGGAAGACAAGATCTGATATCTTCGATCCTCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5844232 CAAATATAGGAAGACAAGATTTGCTATCTTCGATCCCCTCCTCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5844278 AAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * ***
5844324 CAAATACAGGAAGACAAGATCTGATATCTTTGATCCCTTCTTTTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5844370 CAAATACAGGAA-ATCAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGA-CAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5844416 CAAATATAGGAAGATAAGATCTGATATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* ** *
5844462 CAAATACAAGAAGACAAGATCTGCTATCTTTTATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5844508 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCTTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5844554 CAAATACAGGAAAACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5844600 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTAC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5844646 CAAATACAGGAAGACAAGATTTGATATCTTCAATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5844692 CAGATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5844738 CAAATACAGGAAGACAAGATCTACTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5844784 CAAATAAAGGAAGACAAGATCTGCTATCTTCGATCTCCTCTGCAGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * * * **
5844830 C-AA-ACA-AAAAAAAAGATCTGATATCTTTGATCCCCTCCTCTAT
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5844873 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5844919 CAAATACAGGAAGACAAGATCTGCTATCTTTGATCTCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5844965 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5845011 CAAATAGATGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5845057 CAAATACAGGAAGATAAGATCTGCTATCTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * **
5845103 CAAATAAAGGAAG-CAAGATCTGATATCTTCGATCCCCTCCGCTAT
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5845148 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTAC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5845194 CAAATAAAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * *
5845240 CATATACAAGAACACAAGATCTGATATCTTCGATCCCCTCCGCAGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * **
5845286 CAAATACAGAAAGACAAGATCTGCTATCTTCGATCCCTTTTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5845332 CAAATACAGGAAGACAAGATTTGCTATCTTCGATCCCTTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5845378 CAAATAGAGGAAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5845424 CGAATTCAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * * * * * *
5845470 CAAATATAGGAATATAAGATCTGATATCTTTGATCCCTTCTGTTTC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5845516 CAAATACAGGAAAACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5845562 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCTTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5845608 CAAAGACAGGAAGACAAGATCTGCTATCTTCGTTCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5845654 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* **
5845700 CAAATACAGGAAGATAAGATCTGCTATCTTTTATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5845746 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5845792 CAAATACAGGAAAACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5845838 CAAATAGAGGAAGACAAGATCTACTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5845884 CAAATACAGGAAGACAAGATTTGATATCTTCAATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5845930 CAGATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5845976 CAAATACAGGAAGACAAGCTCTGCAATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5846022 CAAATAAAGGAAGACAAGATCTGCTATCTTCGATCTCCTCTGCAGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
** * * * * * **
5846068 C-AA-ACAAAAAAAAAAGATCTGATATCTTTGATCCCCTCCACTAT
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5846112 CAAATACAGGAAGACAAGATCTGCTATCTTAGATCCCCTCCGCTGT
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5846158 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5846204 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5846250 CAAATAGATGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5846296 CAAATACAGGAAGATAAGATCTGCTATCTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * **
5846342 CAAATAAAGGAAG-CAAGATCTGATATCTTCGATCCCCTCCGCTAT
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5846387 CAAATACAGGAGGACAAGATCTGCTTTCTTCGATCCTCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5846433 CAAATAAAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
** * * * * *
5846479 CATCTACAAGAACACAAGATCTGATATCTTTGATCCCCTCCGCAGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5846525 CAAATACAGAAAGACAAGATCTACAATCTTCGATCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5846571 CAAATACA-AAATGACAAGATCTGATATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAA-GACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* **
5846617 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCTTTTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5846663 CAAATACAGGAAGATAAGATTTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5846709 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5846755 CAAATAGAGGAAGACAAGATCTGCTATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5846801 CGAATTCAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5846847 CAAATACAGGAAGACAAGATCTACTATCTTCGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
**
5846893 CAAATACAGGAAGACAAGATCTGCTATCTTTTATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5846939 AAAATACAGGAAGACAAGATCTGATATCTTTGAT-CCATACCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCT-CCGCTGC
* *
5846985 CAAATACAGGAAAACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5847031 CAAATATAGGAAGACAAGAACTGATATCTTCGATCCCTTCCGCAT-C
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGC-TGC
* * *
5847077 CAAAGACAGGAAGACAAGATCTTCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5847123 TAAATACAGGAAGACAAGATCTGCTATTTTTGATCCCCTCCGCTGG
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5847169 CAAATACAAGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5847215 CTAATACAGGAAGACAAGATTTGATATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * *
5847261 CAGATACAGGAGGACAAGATCTGCTATCTTCGTTCTCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
5847307 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* ** *
5847353 CAAATACAGGAAGACAAGATCTACTATCTTTTATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5847399 CAAATACAGGAAGACAAGATCTGATATCTTTGAT-CTCTACCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCT-CCGCTGC
* * *
5847445 CAAATACAGGAAAATAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5847491 CAAATACAGGAAGACAAGATCTGATATCTTAGATCCCTTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * **
5847537 CAAAGATAGGAAGACACGATCTGCTATCTTCGATCTCCTCTACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5847583 TAAATACAGGAAGACAATATCTGCTATTTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5847629 CAAATACAAGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5847675 CAAATATAGGAAGACAAGATTTGATATCTTCGATCCCCTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5847721 CAGATACAGGAAGACAAGATCTGCTATATTTGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5847767 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCAGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * * * *
5847813 TAAATAAAGGAAGGCAAGATCTGCTATCTTTGATCCCTTCCGTTAC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * *
5847859 CGAATTCTGGAAGACAAGATCTGCTATTTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5847905 CAAATAAAGGAAGACAAGATCTGCTATCTTCGTTCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
**
5847951 CAAAT--AGGAAGACAAGATCTGCTATCTTTTATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5847995 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCCGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5848041 CAAATACAGGAAGACAAGATCTGCTATTTTTGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5848087 CAAATATAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5848133 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * * *
5848179 CAAATACAAGAAGACAAGAACTGATATCTTTGATCCCTTTCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5848225 CAAATACAGGAAAATAAGATCTGCTATCTTCGATCTCCTCCGCAGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5848271 CAAATAAAGGAAGGCAAGATCTGCTATCTTTGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5848317 CAAATTCTA-GAAGACAAGATCTGCTATTTTTGATCTCCTCCGCTGC
1 CAAATAC-AGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * *
5848363 CAAATAAAGGAAGAAAAGATCTGCTATCTTCGTTCTCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* **
5848409 CAAAT--AGGAAGATAAGATCTGCTATCTTTTATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5848453 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCCGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5848499 CAAATACAGGAAGACAAGATCTGCTATTTTTGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5848545 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5848591 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5848637 CAAATACAGGAAAACAAGATCTGCTATCTTCGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5848683 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5848729 CAAAGACAGGAAAACAAGATCTGCTACCTTC-ATTCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGA-TCCCCTCCGCTGC
* *
5848775 CAAATACAGGAAGACAAGATCTGATATCTTCGATCCCTTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
** *
5848821 CAAATACAGGAAGACAAGATCTGCTATCTTTTATCCTCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * *
5848867 CAAACACAGGAAGACAAGACCTGATATCTTCGATCCCTTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5848913 CAAATACAGGAAAATAAGATCTGCTATCTACGATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5848959 CAAATACAGGAAGACAAGATCTGCTATCTTCCATCCCCTCCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5849005 CAAATACAGGAAGACAAGATTTGATATCTTCAATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5849051 CAGATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTTCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5849097 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * ** *
5849143 CAAATAAAGGAAGACAAGATCTGCTATCTTCGATCTCCTCTACAGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * * * **
5849189 CAAACACAGAAAGATAAGATCTGATATCTTTGATCCCCTCCGCTAT
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5849235 TAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCTTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * *
5849281 CAAATATAGGAAGACAAGATCTACTATCTTCGATCTCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5849327 CAAATACAGGAAGACAAGATCTGCTATCATCGATCTCCTTCACTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* *
5849373 CAAATAGAGGAAGACAAGATCTTCTATCTTCGATCCCCTCCGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
* * * *
5849419 CAAATATAGGAAGATAAGATCTGCTATCTTGGATCCCCTCTGCTGC
1 CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
*
5849465 CAAATAAAGGAAG
1 CAAATACAGGAAG
5849478 CTTGTCTTCC
Statistics
Matches: 13723, Mismatches: 1377, Indels: 1447
0.83 0.08 0.09
Matches are distributed among these distances:
35 2 0.00
36 6 0.00
37 16 0.00
38 30 0.00
39 30 0.00
40 44 0.00
41 132 0.01
42 322 0.02
43 725 0.05
44 1180 0.09
45 2091 0.15
46 7230 0.53
47 741 0.05
48 485 0.04
49 259 0.02
50 113 0.01
51 86 0.01
52 64 0.00
53 47 0.00
54 31 0.00
55 35 0.00
56 29 0.00
57 8 0.00
58 2 0.00
59 3 0.00
60 1 0.00
62 2 0.00
63 6 0.00
64 1 0.00
65 2 0.00
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (46 bp):
CAAATACAGGAAGACAAGATCTGCTATCTTCGATCCCCTCCGCTGC
Found at i:5849569 original size:46 final size:46
Alignment explanation
Indices: 5849478--5861255 Score: 13630
Period size: 46 Copynumber: 258.2 Consensus size: 46
5849468 ATAAAGGAAG
*
5849478 CTTGTCTTCCTGTATTTGG-AGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5849523 CTTGTCTTCCTATATTTGGCAACGAAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * **
5849569 CATGTTTTCCTGTATTTGGCAGTGGAGGGGATCGAAGATAATAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5849615 CTTGTCTTCCTGTATTTGGTAGTG--GGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5849659 TTTGTCTTCCTGTATTTGGCAGC-AGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* *
5849705 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5849751 CTT-TCCTTCCTGTATTTGGCAGCGGAA-GGGATCGACGATAGCAGAT
1 CTTGT-CTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * *
5849797 CTTGCCTTTCC-GTATTTGGTAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTC-TTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
** * * * *
5849843 CTTGTCTTCCTAAATTTGGCAGTGAAAGGGATTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* **
5849889 CTTGTCTTCCTGTATTTGGCAGCGGAA-GGAATCGAAGATAATAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * * * *
5849935 CTTGTCTTCCTGTATCTGGCAGCGGAGGGGATCGAAAATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5849981 CTTGTCTTCCTGTA----GCAGCGGAGGGGATTGAAGGTAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5850023 CTTGTCTTCCTGTATTTGGCAGCAGAA-GAGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * *
5850069 CTTGTCTTCCTATATTTGGCAGCAGAA-GGGATCAAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * *
5850115 CTTGCCTTCCCGTATTTGGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
** * * *
5850161 CTTGTCTTCCTAAATTTGGCAGCGAAAGGGATTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5850207 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGGATCAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
*
5850253 CTTGTCTTCCTGTATTTGGCAGCGAAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5850299 CATGTTTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5850345 ATTATCTTCCTATATTTGGCAGC-AGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* ** * * * *
5850391 CTTATCTTTATGTATTTTGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5850437 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAAATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5850483 CTTGTCTTCTTGTATTTGGTAGTG-GGGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5850528 CTTGTCTTCCTGTATTTGGCAG-TAGAGGGGATCAAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5850574 CTTATCTTCATGTATTTGGCAGC-AGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* *
5850620 CTTGTCTTCCTGTATTTGGGAACGGAAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
*
5850667 CTTGTCTTCCTGAATTTGGCAGC-AGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* *
5850713 CTTGTCTTCCTGTATTTGGGAACGGAA-GGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* *
5850759 CTTGTCTTCCTGAATTTGGCAGC-AGAGGGGATCGAATATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * *
5850805 CTTGTCTTCCTGTCTTTGGCAGCGGAA-GGGATCGAAGATATCAGAC
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * * *
5850851 CTTGTCTTCCTATATTTGGCAGCGGAGGGGATCGAATATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5850897 CTTGTCTTCCTGTATTTGACAGCGGAA-GGGATCGAAGATAGCAAAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * * * *
5850943 CTTGTCTTCATGTATTTGGTAGCGGAGGAGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
5850989 CTTGTCTTCCTGTATTTGGCAGCAGAA-GGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
*
5851035 CTTGTCTTCCTGTATTTGGCAAC-AGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5851081 C-TGATCTTCTTGTATTTGGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTG-TCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5851127 CTTGTCTTCCTGTATTTGGCAGCGAATGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5851173 CTTGTCTTCCTGTATTTGGTAGCGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5851219 CTTTTCTTCCTATATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5851265 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGG-TTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5851310 CTTTTCTTCCTGAATTTGGCAGCGAAAGGGATTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5851356 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5851402 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5851448 CATGTTTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5851494 ATTATCTTCCTATATTTGGCAGC-AGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * * *
5851540 CTTATCTTCATGTATTTTGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5851586 CTTATCTTCCTGTATTTGGCAGCGAAGGGGATCGAAAATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5851632 CTTGTCTTCTTGTATTTGGTAGTG-GGGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5851677 CTTGTCTTCCTGTATTTGGCAG-TAGAGGGGATCAAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5851723 CTTATCTTCATGTATTTGGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5851769 CTTGTCTTCCTGTATTTGGCAGCGAATGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5851815 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5851861 CTTTTCTTCCTGTATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5851907 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGGGTTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5851953 CTTTTCTTCCTG-ATTTTGGCTGCGAAAGGGATTGAAGATATCAGAT
1 CTTGTCTTCCTGTA-TTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5851999 CTTGTCTTCCTATATTTGGCAGCGGAGGGGATCGAATATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5852045 CTTGTCTTCCTGTATCTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5852091 CTTGTCTTCCTGTATATGGCAGTG--GCGGGATCGAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAG-GGGATCGAAGATAGCAGAT
* * * * * *
5852136 CTTTTCTTCTTGTATTTGGTAGC-AGAGGGGATCGAAGGTAACAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5852182 CTTGTCTTCCTGTATTTGGTAGTGGAA-GAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAG-CGAAGGGGATCGAAGATAGCAGAT
* *
5852228 CTTGTCTTCCTGTATTTGGCAGCGGACGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5852274 CTTGTCTTGCTGTATTTGG-AGCGGA-GGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5852318 CTTGTCTTCCTGTATTTGG-AGCGGAGGGGATCAAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5852363 CTTGTCTTCCTGTATTTGGCAGCG-GGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5852408 CTTGTCTTCCTGTATTTGGCAACGAAGGAGATCAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5852454 CATGTTTTCCTGTATTTGGCAGCGGAA-GAGATCGAAGACAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
** * *
5852500 CTTGTCTTCCTGTATTTGGTTGTG--GGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5852544 CTTGTCTTCCTGTATTCGGCAG-TAGAGGGGATC-AAGATAGTATAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5852589 CTTATCTTCATGTATTTGGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5852635 CTTGTCTTCCTGTATGTGGCAGTGAATGGGATCGAAGATAGCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5852681 CTTGTCTTCCTATATTTGGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5852727 CTTTTTTTCCTGTATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5852773 CTTGCCTTCCCGTATTTGGCAAC-AGAGGGGATCAAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
** * ** *
5852819 C-TGTCTCTCCTAAATTTGGCAGCGAAAGGGATTAAAGATATCAGAT
1 CTTGTCT-TCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5852865 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5852911 CTTG-CATTCCTGTATCTGGCAGCGGA-GGGATCGAAGATATCAAAT
1 CTTGTC-TTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5852956 CTTGTCTTCCTGTA----GCAGCGGAGGGGATCGAAGGTAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5852998 CTTGTCTTCCTGTATTTGGCAGCGGAA-GAGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* *
5853044 CTTGTCTTCC-ATATTT-GCAGCAGAA--GGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * *
5853087 CTTGTCTT--TTTATTT-GCAGCGGA-GGGATCGAAGATAGCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5853129 CTTGTCTTCCTGTATTTGGCAGCGGAA--GGATCAAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * *
5853174 CTTTTCTCCCTGTA-TTGGCAGCGAAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5853219 CTTATCTTTCTGTATTTGG-AACGGAGGGGATCGAAGATAAG-AGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGAT-AGCAGAT
* * * *
5853264 CTTGTCTTCCTGAATTTGGCAGCAAAAGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
5853310 CTTGTCTTCCTGTATTTGGCAGCAGAA-GGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * *
5853356 CTTGTCTTCCTATATTTGGCAGCGGAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5853402 CTTATCTTCCTGTATTT-GCAGCTG-A-GGGATCGAAGATATCA-AT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * *
5853445 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAGGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5853491 CTTGTCTTCCTGTATTTGG-AGCGAAGGGGATCAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5853536 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5853582 CTTGTCTTCCTGAATTTGGCAGCGAAAGGGATTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5853628 CTTGTCTT-CTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5853673 CTTGTCTTCCTGTATCTGGCAGCGGAGGGGATCGAAGATATCA-AT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5853718 CTTGTCTTCCTGTATTTGGTAGCGGAGGGGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5853764 CTTATCTTACTGTATTTGGCAGTGAAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5853810 CATGTTTTCCTGTATTT-GTAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5853855 CTTGTCTTCCTGTATTTGG-AGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5853900 CTTGTCTTCCTGTATTTAG-AGC--AGAGGGATCAAAGATAGAAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAG-GGGATCGAAGATAGCAGAT
*
5853944 CTTGTCTTCCTGTATTTGGCAGCGAAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * **
5853990 CATGTTTTCCTATATTTGGCAGCGGAGGGGATCGAAGATAATAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5854036 CTTGTCTTCCTGTATTTGGTAGTG--GGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5854080 CTTGTCTTCCTGTATTTGGCAGC--AGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5854124 CTTATCTTCATGTATTTGGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5854170 CTTGTCTTCCTGTATTTGGCAGCGAA-GGGA-CAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5854214 CTTGTCTTCCTGTATTTGGCAGC-AGAGGTGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5854260 CTTTTCTTTCTGTATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* ** * * *
5854306 TTTGTCTTCCTGTATTTGGTTGTG-GGGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5854351 CTTGTCTTCCTGTATTCGGCAGTAGAA--GGATCAAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAG-CGAAGGGGATCGAAGATAGCAGAT
* * * * * *
5854396 CTTATCTTCATGTATTTGGCAGTGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5854442 CTTGTTTTCCTGTATGTGGCAGCGAATGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5854488 CTTATCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5854534 CTTTTCTTCCTATATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5854580 CTTGCCTTTCCTGTCTTTGGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTC-TTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * **
5854627 CTTGTCTTCCTGAATTTGGCAGCGAAAGGGATTGAAGATATTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5854673 CTTATCTTCCTGTATTTGGCAGCGGAGGGAATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5854719 CTTGTCTTCCTGTATCTGGCAGC-AGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * * * * *
5854765 CATGTTTTCCTTTATTTGGCAGCGGAGGGGATTGAGGATATCGGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5854811 CTTATCTTCTTGTATTTAG-AGCGGAGGGGATCAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5854856 CTTGTCTTCCTGTATTTTGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* *
5854902 CTTGTCTTCTTGTA-CT-GCAGC-AGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5854946 CATGT-TTCCTATATTTGGCAGCGGAGGGGATCGAGGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
** * * *
5854991 CTTGTCTTCCAATATTTGGCAGCGGAGGGGATCAAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5855037 CTTGTCTTCCTGTATTTAGAAGC-AGAGCGGATCGAGGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* *
5855083 CTTGTCTTCCTGTAGTTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5855129 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5855175 CTTGTCTTCAC-GAATTTGGCAGCGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTC-CTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5855221 TTTGTCTTCCTGTATTTGGTTA-C-AGAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGG-CAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5855267 CTTGTCTTCCTTTATTTGGCAGCGGAGGAGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5855313 CTTGTCTTCCTGAACTCGGCAGCGGAA-GGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
** * * *
5855359 CTTGTCTTCCCCTATTTGGTAGCGGAGGGGATCGAATATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5855405 CTTGTCTTCCTGTATTTGG-AGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * * *
5855450 CTTGACTTCCTGTATCTGGAAGCGGAGGGGATCGAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5855496 CTTGTCTTCCTGTA----GCAGCGGAGGGGATCAAAGGTAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5855538 CTTGTCTTCCTGTATTTGGCAGTGGAA-GAGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAG-CGAAGGGGATCGAAGATAGCAGAT
* *
5855584 CTTGTCTTCCAGTATTTGGCAGCAGAA-GGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
** * * * *
5855630 CTTGTCTTCCTAAATTTTGCAGCGAAAGGGATGGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5855676 CTTGTCTTCCTGTATTTGGCAGCAGAA-GGGATCGAAGATGGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* *
5855722 CTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5855768 CTTATCTTCCTGTAGTTGGCAGC-AGAGGAGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5855814 CTTGTCTTCCTGTATTTGGGAGCGGAGGGGATCGAGGATATCTGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5855860 CTTATCTTCCTGTATTTGG-AGCGGAGGGGATCAAAGATAGCAGGT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5855905 CTTGTCTTCTTGTATTTGGCAG-TAGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5855951 CATGTTTTCCTGTATTTGGCAGCGGAGGGGATCGAGGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5855997 CTTGTCTT-CTAATATTTGGCAGCGGAGGGGATCGAAGATAACAGAT
1 CTTGTCTTCCT-GTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * * *
5856043 CTTGTCTTCGTGTATTTGGAAGCGGAGCGGATCGAGGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5856089 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5856135 CTTGTCTTCTTGTATTTGGTAGTG-GGGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5856180 CTTGTCTTCCTGTATTTGGCA--GTAGAGGGATCAAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAG-GGGATCGAAGATAGCAGAT
* * * * *
5856225 CTTATCTTCATGTATTTGGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
5856271 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5856317 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5856363 CTTTTCTTCCTGTATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5856409 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGGGTTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5856455 CTTTTCTTCCTG-ATTTTGGCTGCGAAAGGGATTGAAGATATCAGAT
1 CTTGTCTTCCTGTA-TTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5856501 CTTGTCTTCCTATATTTGGCAGCGGAGGGGATCGAATATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5856547 CTTGTCTTCCTGTATCTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5856593 CTTGTCTTCCTGTATATGGCAGTG--GCGGGATCGAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAG-GGGATCGAAGATAGCAGAT
* * * * * *
5856638 CTTTTCTTCTTGTATTTGGTAGC-AGAGGGGATCGAAGGTAACAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5856684 CTTGTCTTCCTGTATTTGGTAGTGGAA-GAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAG-CGAAGGGGATCGAAGATAGCAGAT
* *
5856730 CTTGTCTTCCTGTATTTGGCAGCGGACGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5856776 CTTGTCTTGCTGTATTTGG-AGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5856821 CTTGTCTTCCTGTATTTGG-AGCGGAGGGGAT-GAAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCG-AAGATAGCAGAT
* * *
5856866 CTTATCTTCCTGTATTTCGCAGCG-GGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5856911 CTTGTCTTCCTGTATTTGGCAACGAAGGAGATCAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5856957 CATGTTTTCCTGTATTTGGCAGCGGAA-GAGATCGAAGACAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
** * *
5857003 CTTGTCTTCCTGTATTTGGTTGTG--GGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5857047 CTTGTCTTCCTGTATTCGGCAG-TAGAGGGGATCAAAGATAGTATAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5857093 CTTATCTTCATGTATTTGGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5857139 CTTGTCTTCCTGTATGTGGCAGTGAATGGGATCGAAGATAGCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5857185 CTTGTCTTCCTATATTTGGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5857231 CTTTTTTTCCTGTATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5857277 CTTGCCTTCCCGTATTTGGCAAC-AGAGGGGATCAAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
** * ** *
5857323 CTTGTCTTCCTAAATTTGGCAGCGAAAGGGATTAAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5857369 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGAATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5857415 CTTGTCTTCCTGTATCTGGCAGCGGAGGGGATCGAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5857461 CTTGTCTTCCTGTA----GCAGCGGAGGGGATCGAAGGTAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5857503 CTTGTCTTCCTGTATTTGGCAGCGGAA-GAGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* *
5857549 CTTGTCTTCCTATATTTGGCAGCAGAA-GGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * * *
5857595 CTTGTCTTCTTTTATTTGGCAGCGGAGGGGATCGAAGATAGCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5857641 CTTGTCTTCCTGTATTTGGCAGCGGAA-GGGATCAAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* *
5857687 CTTTTCTCCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5857733 CTTATCTTTCTGTATTTGG-AACGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * ** * * *
5857778 CTTGTCTTCCTGAATTTTGCAGTAAAAGGGATAGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
5857824 CTTGTCTTCCTGTATTTGGCAGCAGAA-GGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* *
5857870 CTTGTCTTCCTATATTTGGCAGCGGAGGAGG-TCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGG-GGATCGAAGATAGCAGAT
* *
5857916 CTTATCTTCCTGTATTTGGCAGCTG-AGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * * *
5857962 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAGGATATCGGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5858008 CTTGTCTTCCTGTATTTGG-AGCGAAGGGGATCAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5858053 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5858099 CTTGTCTTCCTGAATTTGGCAGCAAAAGGGATTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5858145 CTTGTCTT-CTGTATTTGGCAGCGGAGGGGATCCAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5858190 CTTGTCTTCCTGTATCTGGCAGCGGAGGGGATCGAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5858236 CTTGTCTTCCTGTATTTGGTAGCGGAGGGGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * * *
5858282 CTTATCTTACTGTATTTGGCAGTGAAAGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5858328 CTTGTCTTCCTGTATTTGGCAGC-AGAGAGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * *
5858374 CTTGTCTTCTTGTATTTGG-AGCGGAGGGGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5858419 CTTGTCTTCCTGTATTTAG-AGC-AGAGGGGATCAAAGATAGAAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
*
5858464 CTTGTCTTCCTGTATTTGGCAGCGAAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5858510 CATGTTTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5858556 CTTGTCTTCCTGTATTTGGTAGTG-GGGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5858601 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5858647 CTTATCTTCATGTATTTGGCAGCGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5858693 CTTGTCTTCCTGTATTTGGCAGCGAA-GGGA-CAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5858737 CTTGTCTTCCTGTATTTGGCAGCGGAGGTGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5858783 CTTTTCTTTCTGTATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* ** * * *
5858829 TTTGTCTTCCTGTATTTGGTTGTG-GGGGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5858874 CTTGTCTTCCTGTATTCGGCAGTAGAA-GGGATCAAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAG-CGAAGGGGATCGAAGATAGCAGAT
* * * * * *
5858920 CTTATCTTCATGTATTTGGCAGTGGAGGAGATCGAGGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5858966 CTTGTTTTCCTGTATGTGGCAGCGAATGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5859012 CTTATCTTCCTGTATTTGGCAGCAAAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5859058 CTTTTCTTCCTGTATTTGGCAGCGGAGGGGATCGACGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5859104 CTTGCCTTCCTGTATTTGGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * *
5859150 CTTGTCTTCCTGAATTTGGCAGCGAAAGGGATTGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5859196 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
5859242 CTTGTCTTCCTGTATTTGGCAGC-AGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * * * * *
5859288 CATGTTTTCCTTTATTTGGCAGCGGAGGGGATTGAGGATATCGGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5859334 CTTATCTTCTTGTATTTAG-AGCGGAGGGGATCAAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5859379 CTTGTCTTCCTGTATTTTGCAGC-AGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* *
5859425 CTTGTCTTCTTGTACTTGGCAGC-AGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * * *
5859471 CATGTTTTCCTATATTTGGCAGCGGAGGGGATCGAGGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
** * * *
5859517 CTTGTCTTCCAATATTTGGCAGCGGAGGGGATCAAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5859563 CTTGTCTTCCTGTATTTAGAAGC-AGAGCGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
5859609 CTTGTCTTCCTGTATTTGGCAGC--AGAGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAG-GGGATCGAAGATAGCAGAT
* * *
5859654 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCAAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5859700 CTTGTCTTCAC-GAATTTGGCAGCGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTC-CTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5859746 TTTGTCTTCCTGTATTTGGTTA-C-AGAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGG-CAGCGA-AGGGGATCGAAGATAGCAGAT
* * *
5859792 CTTGTCTTCCTTTATTTGGCAGCGGAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5859838 CTTGTCTTCCTGAATTCGGCAGCGGAA-GGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * * *
5859884 CTTGTCTTCC-CTATTTGGTAGCGGAGGGGATCGAATATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5859929 CTTGTCTTCCTGTATTTGG-AGCGGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * * *
5859974 CTTGACTTCCTGTATCTGGAAGCGGA-GGGATCGAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5860019 CTTGTCTTCCTGTA----GCAGCGGAGGGGATCAAAG-TAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5860060 CTTGTCTTCCTGTATTTGGCAGTGGAA-GAGATCAAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAG-CGAAGGGGATCGAAGATAGCAGAT
* *
5860106 CTTGTCTTCCAGTATTTGGCAGCAGAA-GGGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
** * * * *
5860152 CTTGTCTTCCTAAATTTTGCAGCGAAAGGGATGGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5860198 CTTGTCTTCCTGTATTTGGCAGCAGAA-GGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* *
5860244 CTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5860290 CTTATCTTCCTGTAGTTGGCAGCGGAGGAGATCGAAGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5860336 CTTGTCTTCCTGTATTTGGGAGCGGAGGGGATCGAGGATATCTGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5860382 CTTGTCTTCCTGTATTTGG-AGCGGAGGGGATCAAAGATAGCAGGT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5860427 CTTGTCTTCTTGTATTTGGCAG-TAGAGGGGATCGAAGATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5860473 CATGTTTTCCTGTATTTGGCAGCGGAGGGGATCGAGGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5860519 CTTGTCTT-CTAATATTTGGCAGCGGAGGGGATCGAAGATAACAGAT
1 CTTGTCTTCCT-GTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * * *
5860565 CTTGTCTTCGTGTATTTGGAAGCGGAGCGGATCGAGGATATCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* *
5860611 CTTGTCTTCCTGTATTTGGCAGCGGAGGGGATCGAAGATAGCGGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * **
5860657 CTTGTCTTCCTGTATTTGGCAACGGAGGGGATCGAAGATATTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5860703 CTTGTCTTCAC-GAATTTGGCAGCGGAGGGGATCGAAGATATCAGAT
1 CTTGTCTTC-CTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * *
5860749 CTTGTCTTCCTGTATTTGGTAGCGGAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5860795 CTTGTCTTCCTTTATTTGGCAGCGGAGGAGATCGAATATAGTAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * *
5860841 CTTGTCTTCCTGAACTCGGCAGCGGAA-GGGATTGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
** * * *
5860887 CTTGTCTTCCCCTATTTGGTAGCGGAGGGGATCGAATATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
5860933 CTTGTCTTCCTGTATTTGG-AGC-AGAGGGGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * * * *
5860978 CTTGTCTTCCTGTATCTGGCAGCGGAGGGGATCAAAGATATCAAAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
*
5861024 CTTGTCTTCCTGTA----GCAGC-AGAGGGGATCGAAGGTAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGA-AGGGGATCGAAGATAGCAGAT
* * *
5861066 CTTGTCTTCCTGTATTTGGCAGTGGAA-GAGATCGAAGATAACAGAT
1 CTTGTCTTCCTGTATTTGGCAG-CGAAGGGGATCGAAGATAGCAGAT
* *
5861112 CTTGTCTTCCTGTATTTGGCAGCAGAA-GGGATCGAAGATATCAGAA
1 CTTGTCTTCCTGTATTTGGCAGC-GAAGGGGATCGAAGATAGCAGAT
* * * *
5861158 CTTGTCTTCTTGTATTTGGCAGCGGAGTGGATCGAAGATAGCAGGT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
* * * * *
5861204 GTTGTCTTCCAG-ATTTGTCAGCAAAGGAGATCGAAGATAGCAGAT
1 CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
5861249 CTTGTCT
1 CTTGTCT
5861256 GTATCACACT
Statistics
Matches: 10052, Mismatches: 1396, Indels: 570
0.84 0.12 0.05
Matches are distributed among these distances:
41 37 0.00
42 222 0.02
43 56 0.01
44 423 0.04
45 1761 0.18
46 7379 0.73
47 168 0.02
48 6 0.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (46 bp):
CTTGTCTTCCTGTATTTGGCAGCGAAGGGGATCGAAGATAGCAGAT
Found at i:5868506 original size:18 final size:18
Alignment explanation
Indices: 5868465--5868507 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
5868455 TATTAAATTG
*
5868465 TCATTTTATATGTATTAC
1 TCATTTAATATGTATTAC
*
5868483 TTATTTAATATGTATATAC
1 TCATTTAATATGTAT-TAC
5868502 -CATTTA
1 TCATTTA
5868508 TTTGATTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 18 0.86
19 3 0.14
ACGTcount: A:0.33, C:0.09, G:0.05, T:0.53
Consensus pattern (18 bp):
TCATTTAATATGTATTAC
Found at i:5875002 original size:18 final size:18
Alignment explanation
Indices: 5874981--5875071 Score: 69
Period size: 18 Copynumber: 4.8 Consensus size: 18
5874971 AATAAAAAAT
5874981 AAAATAAAATCAAAATAA
1 AAAATAAAATCAAAATAA
*
5874999 AAAATCAAATCAAAAAAATAAA
1 AAAATAAAATC---AAAAT-AA
*
5875021 AAAATAAAA--AAAAGAA
1 AAAATAAAATCAAAATAA
*
5875037 AACAATTAAAATCAAAATCA
1 AA-AA-TAAAATCAAAATAA
* *
5875057 AAATTAAAGTCAAAA
1 AAAATAAAATCAAAA
5875072 AATAAAAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
16 4 0.07
17 6 0.10
18 25 0.43
19 1 0.02
20 7 0.12
21 5 0.09
22 10 0.17
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.15
Consensus pattern (18 bp):
AAAATAAAATCAAAATAA
Found at i:5875015 original size:13 final size:13
Alignment explanation
Indices: 5874971--5875007 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
5874961 GTTTAGATTC
5874971 AATAAAAAAT-AA
1 AATAAAAAATCAA
5874983 AAT--AAAATCAA
1 AATAAAAAATCAA
5874994 AATAAAAAATCAA
1 AATAAAAAATCAA
5875007 A
1 A
5875008 TCAAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
10 5 0.23
11 5 0.23
12 3 0.14
13 9 0.41
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (13 bp):
AATAAAAAATCAA
Found at i:5875047 original size:17 final size:17
Alignment explanation
Indices: 5875005--5875038 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5874995 ATAAAAAATC
* *
5875005 AAATCAAAAAAATAAAA
1 AAATAAAAAAAAGAAAA
5875022 AAATAAAAAAAAGAAAA
1 AAATAAAAAAAAGAAAA
5875039 CAATTAAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.03, G:0.03, T:0.09
Consensus pattern (17 bp):
AAATAAAAAAAAGAAAA
Found at i:5876024 original size:7 final size:7
Alignment explanation
Indices: 5876006--5876055 Score: 59
Period size: 7 Copynumber: 7.0 Consensus size: 7
5875996 GAGTCGTAAA
5876006 AAAAATG
1 AAAAATG
5876013 AAAAAATG
1 -AAAAATG
5876021 -AAAATG
1 AAAAATG
5876027 AAAAATG
1 AAAAATG
5876034 AAAAATGG
1 AAAAAT-G
5876042 AAAAA-G
1 AAAAATG
5876048 TAAAAATG
1 -AAAAATG
5876056 GAGAGGCTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
6 7 0.18
7 17 0.45
8 14 0.37
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:5876026 original size:14 final size:13
Alignment explanation
Indices: 5876007--5876037 Score: 53
Period size: 13 Copynumber: 2.3 Consensus size: 13
5875997 AGTCGTAAAA
5876007 AAAATGAAAAAATG
1 AAAATG-AAAAATG
5876021 AAAATGAAAAATG
1 AAAATGAAAAATG
5876034 AAAA
1 AAAA
5876038 ATGGAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (13 bp):
AAAATGAAAAATG
Found at i:5876044 original size:15 final size:15
Alignment explanation
Indices: 5876006--5876057 Score: 65
Period size: 15 Copynumber: 3.6 Consensus size: 15
5875996 GAGTCGTAAA
*
5876006 AAAAATGAAAAAATG
1 AAAAATGGAAAAATG
5876021 -AAAAT-GAAAAATG
1 AAAAATGGAAAAATG
5876034 AAAAATGGAAAAA-G
1 AAAAATGGAAAAATG
5876048 TAAAAATGGA
1 -AAAAATGGA
5876058 GAGGCTAAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 7 0.21
14 11 0.33
15 15 0.45
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.13
Consensus pattern (15 bp):
AAAAATGGAAAAATG
Found at i:5877513 original size:43 final size:43
Alignment explanation
Indices: 5877447--5877638 Score: 226
Period size: 43 Copynumber: 4.5 Consensus size: 43
5877437 TGCTCAAAGC
* * *
5877447 ATGGTGCACGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCA
1 ATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCG
* * *
5877490 ATGGTGCCCGAGGTTCCCACACGACCAAGGTCCTAGGTTCCCG
1 ATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCG
** ** **
5877533 ATGGTGCCCGAGGCTCCCGTAC-ATCTGATCGCCTAGG-TGCCG
1 ATGGTGCCCGAGGCTCCCACACGA-CCAAGGGCCTAGGTTGCCG
* * *
5877575 GTGGTGCCCGAGGCTCTCTCACGACCAAGGGCCTAGGTTGCCG
1 ATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCG
5877618 ATGGTGCCCGAGGCTCCCACA
1 ATGGTGCCCGAGGCTCCCACA
5877639 TATGTCTAAT
Statistics
Matches: 120, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
42 32 0.27
43 88 0.73
ACGTcount: A:0.17, C:0.34, G:0.31, T:0.18
Consensus pattern (43 bp):
ATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCG
Found at i:5877610 original size:85 final size:86
Alignment explanation
Indices: 5877477--5877635 Score: 248
Period size: 85 Copynumber: 1.9 Consensus size: 86
5877467 ACGACCAAGG
* *
5877477 GCCTAGGTTGCCAATGGTGCCCGAGGTTCCCACACGACCAAGGTCCTAGGTTCCCGATGGTGCCC
1 GCCTAGGTTGCCAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTCCCGATGGTGCCC
5877542 GAGGCTCCCGTACATCTGATC
66 GAGGCTCCCGTACATCTGATC
** * * *
5877563 GCCTAGG-TGCCGGTGGTGCCCGAGGCTCTCTCACGACCAAGGGCCTAGGTTGCCGATGGTGCCC
1 GCCTAGGTTGCCAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTCCCGATGGTGCCC
5877627 GAGGCTCCC
66 GAGGCTCCC
5877636 ACATATGTCT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
85 59 0.89
86 7 0.11
ACGTcount: A:0.15, C:0.34, G:0.31, T:0.19
Consensus pattern (86 bp):
GCCTAGGTTGCCAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTCCCGATGGTGCCC
GAGGCTCCCGTACATCTGATC
Found at i:5877704 original size:20 final size:22
Alignment explanation
Indices: 5877666--5877723 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
5877656 CAATTTTGAC
*
5877666 CTAAAAATATATAATTATAT-TT
1 CTAAAAATATA-AAATATATGTT
5877688 -TAAAAATATAAAATATATGTT
1 CTAAAAATATAAAATATATGTT
5877709 CT-AAAAT-TAAAATAT
1 CTAAAAATATAAAATAT
5877724 TTTATTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 15 0.45
21 17 0.52
22 1 0.03
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (22 bp):
CTAAAAATATAAAATATATGTT
Found at i:5878943 original size:176 final size:176
Alignment explanation
Indices: 5878645--5879001 Score: 669
Period size: 176 Copynumber: 2.0 Consensus size: 176
5878635 TACTCATCTA
*
5878645 TTTTCTAATCAATATGCAGGCACGAAATGGAAATTTCCATGAGAAAGAAGTATCGCGTATGAAAA
1 TTTTCTAATCAATATGCAGGCACGAAATGGAAATTTCCATGAAAAAGAAGTATCGCGTATGAAAA
* *
5878710 AGTAAGTTCCATGACATCGGCTGAAGCAATAACAACAATTGCAAAAAGACGTTGACTCCTATAGA
66 AGTAAGTTCCATGACATCGGCTGAAGCAATAACAACAACTGCAAAAAGACATTGACTCCTATAGA
5878775 AATCCATCAGTTTGGAAACTATAACGTATATGCTACGACTGGGTTT
131 AATCCATCAGTTTGGAAACTATAACGTATATGCTACGACTGGGTTT
*
5878821 TTTTCTAATCAATATGCAGTCACGAAATGGAAATTTCCATGAAAAAGAAGTATCGCGTATGAAAA
1 TTTTCTAATCAATATGCAGGCACGAAATGGAAATTTCCATGAAAAAGAAGTATCGCGTATGAAAA
5878886 AGTAAGTTCCATGACATCGGCTGAAGCAATAACAACAACTGCAAAAAGACATTGACTCCTATAGA
66 AGTAAGTTCCATGACATCGGCTGAAGCAATAACAACAACTGCAAAAAGACATTGACTCCTATAGA
*
5878951 AATCCATCAGTTTGGAAACTATAACGTATTTGCTACGACTGGGTTT
131 AATCCATCAGTTTGGAAACTATAACGTATATGCTACGACTGGGTTT
5878997 TTTTC
1 TTTTC
5879002 GTGTGTAAGG
Statistics
Matches: 176, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
176 176 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.27
Consensus pattern (176 bp):
TTTTCTAATCAATATGCAGGCACGAAATGGAAATTTCCATGAAAAAGAAGTATCGCGTATGAAAA
AGTAAGTTCCATGACATCGGCTGAAGCAATAACAACAACTGCAAAAAGACATTGACTCCTATAGA
AATCCATCAGTTTGGAAACTATAACGTATATGCTACGACTGGGTTT
Found at i:5880963 original size:104 final size:105
Alignment explanation
Indices: 5880784--5881077 Score: 493
Period size: 105 Copynumber: 2.8 Consensus size: 105
5880774 TAACCGTTAT
** *
5880784 CGGTGGATCCCGCACTTAGCACCACCACTG-AATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
5880848 GAATCAGCACATAGCAACCCCCTTT-TCATTTCAAAAATA
66 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAAATA
*
5880887 CGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCTTCGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
**
5880952 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGGTA
66 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAAATA
*
5880992 CGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACATAGCAACCCCTCGGGG
1 CGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
5881057 GAATCAGCACTTAGCAACCCC
66 GAATCAGCACATAGCAACCCC
5881078 TCGGGGGAAT
Statistics
Matches: 179, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
103 27 0.15
104 58 0.32
105 94 0.53
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (105 bp):
CGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAAATA
Found at i:5881064 original size:27 final size:27
Alignment explanation
Indices: 5881027--5881104 Score: 138
Period size: 27 Copynumber: 2.9 Consensus size: 27
5881017 CAATGAAATC
5881027 GGGGAATCAGCACATAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
*
5881054 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
*
5881081 GGGGAATCAGTACATAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
5881105 CTTTCACATT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.29, C:0.32, G:0.26, T:0.13
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTCG
Found at i:5881083 original size:132 final size:132
Alignment explanation
Indices: 5880922--5881209 Score: 522
Period size: 132 Copynumber: 2.2 Consensus size: 132
5880912 CAATGAAATC
*
5880922 GGGGAATCAGCACTTAGCAACCCTTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAA
1 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAA
**
5880987 AGGTACGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACATAGCAACCCCT
66 AGGTACGGTGGATATCGCACTTAGCACCACCAATGAAATCAAGGAATCAGCACATAGCAACCCCT
5881052 CG
131 CG
*
5881054 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGTACATAGCAACCCCCTTTCACATTTCAA
1 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAA
5881119 AGGTACGGTGGATATCGCACTTAGCACCACCAATGAAATCAAGGAATCAGCACATAGCAACCCCT
66 AGGTACGGTGGATATCGCACTTAGCACCACCAATGAAATCAAGGAATCAGCACATAGCAACCCCT
5881184 CG
131 CG
* *
5881186 GGGGAATCAACACATAGCAACCCC
1 GGGGAATCAGCACTTAGCAACCCC
5881210 CTTTCACATT
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
132 150 1.00
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (132 bp):
GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAA
AGGTACGGTGGATATCGCACTTAGCACCACCAATGAAATCAAGGAATCAGCACATAGCAACCCCT
CG
Found at i:5881165 original size:105 final size:104
Alignment explanation
Indices: 5881056--5881287 Score: 367
Period size: 105 Copynumber: 2.2 Consensus size: 104
5881046 ACCCCTCGGG
* **
5881056 GGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGTACATAGCAACCCCCTTTCACATTTCAAAG
1 GGAATCAGCACATAGCAACCCCTCGGGGGAATCAACACATAGCAACCCCCTTTCACATTTCAAAG
*
5881121 GTACGGTGGAT-ATCGCACTTAGCACCACCAATGAAATCAA
66 GTACGGTGGATCA-CGCACCTAGCACCACCAATG-AATCAA
5881161 GGAATCAGCACATAGCAACCCCTCGGGGGAATCAACACATAGCAACCCCCTTTCACATTTCAAAG
1 GGAATCAGCACATAGCAACCCCTCGGGGGAATCAACACATAGCAACCCCCTTTCACATTTCAAAG
* **
5881226 GTATGGTGGATCACGCACCTAGCACCACCAATGAATCGG
66 GTACGGTGGATCACGCACCTAGCACCACCAATGAATCAA
*
5881265 GGAATCAGCACACAGCAACCCCT
1 GGAATCAGCACATAGCAACCCCT
5881288 TTTATATACA
Statistics
Matches: 118, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
104 26 0.22
105 91 0.77
106 1 0.01
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (104 bp):
GGAATCAGCACATAGCAACCCCTCGGGGGAATCAACACATAGCAACCCCCTTTCACATTTCAAAG
GTACGGTGGATCACGCACCTAGCACCACCAATGAATCAA
Found at i:5881236 original size:237 final size:235
Alignment explanation
Indices: 5880818--5881287 Score: 798
Period size: 237 Copynumber: 2.0 Consensus size: 235
5880808 CCACTGAATC
*
5880818 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAA
1 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAA
** * *
5880883 AATACGGTGGATATCGCACTTAGCACCACCAATGAAATCGGGGAATCAGCACTTAGCAACCCTTC
66 AATACGGTGGATATCGCACTTAGCACCACCAATGAAATCAAGGAATCAGCACATAGCAACCCCTC
* *
5880948 GGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGGTACGGTGGAT-ATCGCACTTAGC
131 GGGGGAATCAACACATAGCAACCCCCTTTCACATTTCAAAGGTACGGTGGATCA-CGCACCTAGC
*
5881012 ACCACCAATGAAATCGGGGAATCAGCACATAGCAACCCCTCG
195 ACCACCAATG-AATCGGGGAATCAGCACACAGCAACCCCTCG
*
5881054 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGTACATAGCAACCCCCTTTCACATTTCAA
1 GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTT-ACATTTCAA
**
5881119 AGGTACGGTGGATATCGCACTTAGCACCACCAATGAAATCAAGGAATCAGCACATAGCAACCCCT
65 AAATACGGTGGATATCGCACTTAGCACCACCAATGAAATCAAGGAATCAGCACATAGCAACCCCT
*
5881184 CGGGGGAATCAACACATAGCAACCCCCTTTCACATTTCAAAGGTATGGTGGATCACGCACCTAGC
130 CGGGGGAATCAACACATAGCAACCCCCTTTCACATTTCAAAGGTACGGTGGATCACGCACCTAGC
5881249 ACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
195 ACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
5881288 TTTATATACA
Statistics
Matches: 220, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
236 82 0.37
237 137 0.62
238 1 0.00
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.18
Consensus pattern (235 bp):
GGGGAATCAGCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTACATTTCAAA
AATACGGTGGATATCGCACTTAGCACCACCAATGAAATCAAGGAATCAGCACATAGCAACCCCTC
GGGGGAATCAACACATAGCAACCCCCTTTCACATTTCAAAGGTACGGTGGATCACGCACCTAGCA
CCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTCG
Found at i:5881650 original size:30 final size:29
Alignment explanation
Indices: 5881616--5881680 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
5881606 TAACCCACCA
5881616 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
5881646 CCCAAACTTTTGCATAATTACATTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
5881676 CCCAA
1 CCCAA
5881681 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:5881654 original size:31 final size:30
Alignment explanation
Indices: 5881623--5881680 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
5881613 CCACCCAACT
5881623 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
5881653 TTTTGCATAATTACATTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
5881681 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:5883052 original size:18 final size:19
Alignment explanation
Indices: 5883012--5883051 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
5883002 GCAAATGTTC
5883012 TTTCATTCTTTACGATTTT
1 TTTCATTCTTTACGATTTT
5883031 TTTCATTCTTT-CAGATTTT
1 TTTCATTCTTTAC-GATTTT
5883050 TT
1 TT
5883052 CTGCCAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.15, C:0.15, G:0.05, T:0.65
Consensus pattern (19 bp):
TTTCATTCTTTACGATTTT
Found at i:5884030 original size:7 final size:7
Alignment explanation
Indices: 5884005--5884046 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
5883995 GTGATGTGAA
5884005 AAAAATG
1 AAAAATG
5884012 AAAAGATG
1 AAAA-ATG
5884020 -AAAATG
1 AAAAATG
5884026 AAAAATG
1 AAAAATG
5884033 AAAAA-G
1 AAAAATG
5884039 TAAAAATG
1 -AAAAATG
5884047 GAGAGGTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 4 0.13
7 23 0.74
8 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:5884044 original size:21 final size:21
Alignment explanation
Indices: 5884005--5884046 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
5883995 GTGATGTGAA
*
5884005 AAAAATGAAAAGATGAAAATG
1 AAAAATGAAAAGATAAAAATG
5884026 AAAAATGAAAA-AGTAAAAATG
1 AAAAATGAAAAGA-TAAAAATG
5884047 GAGAGGTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (21 bp):
AAAAATGAAAAGATAAAAATG
Found at i:5885139 original size:22 final size:23
Alignment explanation
Indices: 5885108--5885152 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
5885098 CGTTAAAATA
*
5885108 TCATTTAAATGACATTC-TACAT
1 TCATTCAAATGACATTCATACAT
5885130 TCATTCAAATGACATTCATACAT
1 TCATTCAAATGACATTCATACAT
5885153 GTCTAGTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (23 bp):
TCATTCAAATGACATTCATACAT
Found at i:5885440 original size:89 final size:89
Alignment explanation
Indices: 5885341--5886114 Score: 1239
Period size: 89 Copynumber: 8.7 Consensus size: 89
5885331 TATATTGGTA
* *
5885341 GTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCCCATACTGGTGGCGGAGTAGATCGAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
*
5885406 CAGATATTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
* *
5885430 GTGAAGTAGATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGCAAAGTAGATCGAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
5885495 CAGATCTTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
* *
5885519 GTGAAGTAGATCAAATATA-TCAGATCTTGTCTTCTCATACTGGTGGCGAAGTAGATCGAAGAAA
1 GTGAAGTAGATCAAAGATACT-AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
*
5885583 GCAGATATTGTCTTCATGTACTGGC
65 GCAGATCTTGTCTTCATGTACTGGC
* * *
5885608 GTGAAGTAAATCAAAGATACCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCAAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
5885673 CAGATCTTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
* *
5885697 GTGAAGTAGATCAAATATA-TCAGATCTTGTCTTCCCATACTAGTGGCGAAGTAGATCGAAGAAA
1 GTGAAGTAGATCAAAGATACT-AGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
*
5885761 GCAAATCTTGTCTTCATGTACTGGC
65 GCAGATCTTGTCTTCATGTACTGGC
* * * *
5885786 GTGAAGTAGATCAAATATACTAGATCTTGTCTTCCCACACTGGTGGCAAAGTAGATCGAAAAAAA
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCG-AAGAAA
* *
5885851 GTAGATCTTATCTTCATGTACTGGC
65 GCAGATCTTGTCTTCATGTACTGGC
* * * *
5885876 GTGAAGTAGATCAAAGATGCCAGATCTTGTCTTCCCATACTGGTGGCGAAATAGATCAAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
5885941 CAGATCTTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
5885965 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
5886030 CAGATCTTGTCTTCATGTACTGGC
66 CAGATCTTGTCTTCATGTACTGGC
* * ** *
5886054 GTGAAGTAGATCAAAGAAAGTAGATCTTGTCTTCCCATA-TATTGGCGAAATAGATCGAAGA
1 GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGA
5886115 TACAAGTCTT
Statistics
Matches: 632, Mismatches: 48, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
88 19 0.03
89 534 0.84
90 79 0.12
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (89 bp):
GTGAAGTAGATCAAAGATACTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAG
CAGATCTTGTCTTCATGTACTGGC
Found at i:5886717 original size:17 final size:17
Alignment explanation
Indices: 5886695--5886751 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
5886685 CGGAGCTAGC
5886695 CTCCTCCACGCATGCCG
1 CTCCTCCACGCATGCCG
* *
5886712 CTCCTCTACGCATGCCA
1 CTCCTCCACGCATGCCG
* * **
5886729 CACCTCCGCAAATGCCG
1 CTCCTCCACGCATGCCG
5886746 CTCCTC
1 CTCCTC
5886752 AAGCACGTAC
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.16, C:0.51, G:0.14, T:0.19
Consensus pattern (17 bp):
CTCCTCCACGCATGCCG
Found at i:5887926 original size:18 final size:19
Alignment explanation
Indices: 5887903--5887997 Score: 71
Period size: 18 Copynumber: 5.3 Consensus size: 19
5887893 ATCCTTATTT
5887903 TACTTTCTTATT-TTTATA
1 TACTTTCTTATTATTTATA
* *
5887921 TACTTT-ATATTATATATA
1 TACTTTCTTATTATTTATA
5887939 TACTTATACATT-TTATTT-TA
1 TACTT-T-C-TTATTATTTATA
5887959 T--TTTCTTATT-TTTATA
1 TACTTTCTTATTATTTATA
* *
5887975 TACTTT-ATATTATATATA
1 TACTTTCTTATTATTTATA
5887993 TACTT
1 TACTT
5887998 ATATATTTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
15 5 0.08
16 6 0.10
17 9 0.15
18 31 0.51
19 1 0.02
20 3 0.05
21 5 0.08
22 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.62
Consensus pattern (19 bp):
TACTTTCTTATTATTTATA
Found at i:5887933 original size:14 final size:14
Alignment explanation
Indices: 5887916--5887990 Score: 50
Period size: 14 Copynumber: 5.5 Consensus size: 14
5887906 TTTCTTATTT
5887916 TTATATACTTTATA
1 TTATATACTTTATA
5887930 TTATATA---TATA
1 TTATATACTTTATA
* * *
5887941 CTTATACATTTTATT
1 -TTATATACTTTATA
* * *
5887956 TTATTTTC-TTATTT
1 TTATATACTTTA-TA
5887970 TTATATACTTTATA
1 TTATATACTTTATA
5887984 TTATATA
1 TTATATA
5887991 TATACTTATA
Statistics
Matches: 46, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
11 4 0.09
12 6 0.13
13 3 0.07
14 27 0.59
15 6 0.13
ACGTcount: A:0.32, C:0.07, G:0.00, T:0.61
Consensus pattern (14 bp):
TTATATACTTTATA
Found at i:5888006 original size:54 final size:54
Alignment explanation
Indices: 5887897--5888011 Score: 212
Period size: 54 Copynumber: 2.1 Consensus size: 54
5887887 CCTTATATCC
5887897 TTATTTTACTTTCTTATTTTTATATACTTTATATTATATATATACTTATACATT
1 TTATTTTACTTTCTTATTTTTATATACTTTATATTATATATATACTTATACATT
* *
5887951 TTATTTTATTTTCTTATTTTTATATACTTTATATTATATATATACTTATATATT
1 TTATTTTACTTTCTTATTTTTATATACTTTATATTATATATATACTTATACATT
5888005 TTATTTT
1 TTATTTT
5888012 GTAAATATAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (54 bp):
TTATTTTACTTTCTTATTTTTATATACTTTATATTATATATATACTTATACATT
Found at i:5888007 original size:26 final size:26
Alignment explanation
Indices: 5887916--5888008 Score: 64
Period size: 26 Copynumber: 3.5 Consensus size: 26
5887906 TTTCTTATTT
*
5887916 TTATATACTTTATATTATATATATAC
1 TTATATATTTTATATTATATATATAC
* * * * *
5887942 TTATACATTTTATTTTAT-TTTCTTAT
1 TTATATATTTTATATTATATAT-ATAC
* *
5887968 TTTTATATACTT-TATATTATATATATAC
1 TTATATAT-TTTATAT--TATATATATAC
5887996 TTATATATTTTAT
1 TTATATATTTTAT
5888009 TTTGTAAATA
Statistics
Matches: 46, Mismatches: 15, Indels: 10
0.65 0.21 0.14
Matches are distributed among these distances:
25 2 0.04
26 25 0.54
27 4 0.09
28 13 0.28
29 2 0.04
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (26 bp):
TTATATATTTTATATTATATATATAC
Found at i:5888030 original size:54 final size:54
Alignment explanation
Indices: 5887918--5888031 Score: 131
Period size: 54 Copynumber: 2.1 Consensus size: 54
5887908 TCTTATTTTT
** * ****
5887918 ATATACTTTATATTATATATATACTTATACATTTTATTTTATTTTCTTATTTTT
1 ATATACTTTATATTATATATATACTTATACATTTTATTTTATAATCATATACAC
* *
5887972 ATATACTTTATATTATATATATACTTATATATTTTATTTTGTAAAT-ATATACAC
1 ATATACTTTATATTATATATATACTTATACATTTTATTTTAT-AATCATATACAC
5888026 ATATAC
1 ATATAC
5888032 ATTTTTTTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 49 0.98
55 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (54 bp):
ATATACTTTATATTATATATATACTTATACATTTTATTTTATAATCATATACAC
Found at i:5889041 original size:19 final size:19
Alignment explanation
Indices: 5889006--5889054 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
5888996 ATATTTTATT
*
5889006 TTTTATA-TTTGTAATAAA
1 TTTTATATTTTTTAATAAA
* *
5889024 TTTTATATTTTTTTATAAC
1 TTTTATATTTTTTAATAAA
*
5889043 TTTTACATTTTT
1 TTTTATATTTTT
5889055 AAAAATATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
18 7 0.27
19 19 0.73
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (19 bp):
TTTTATATTTTTTAATAAA
Found at i:5892194 original size:144 final size:143
Alignment explanation
Indices: 5892000--5892466 Score: 745
Period size: 144 Copynumber: 3.2 Consensus size: 143
5891990 AACCAACTTC
* *
5892000 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
1 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTTATTGTACCTCTCCCAAAAC
*
5892065 AAATTGACTGGTTCAATCCCTTCTTGTGTTGGTAGTTTATCAAAGATGCAGGACTTAGCCCTTGG
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGGACTTAG-CCTTGG
5892130 TTCTAATCTATTAA
130 TTCTAATCTATTAA
* *
5892144 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTTATTGTACCTCTCCGAAAGC
1 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTTATTGTACCTCTCCCAAAAC
* * * ** **
5892209 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTGTCAAAGATGCAGTATTTATTACTTCC
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGGACTTA-GCCTTGG
5892274 TTCTAATCTATTAA
130 TTCTAATCTATTAA
* *
5892288 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTTTTTGGACCTCTCCCAAAAC
1 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTTATTGTACCTCTCCCAAAAC
* * *
5892353 AAATTGACCGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGGCTTAAGCCTTGG
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGGACTT-AGCCTTGG
5892418 TTCTAATCTATTAA
130 TTCTAATCTATTAA
*
5892432 AAGGTCCTATTCCCCAAGAAATTTGTAATTTAGCA
1 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCA
5892467 GACTCAATGA
Statistics
Matches: 294, Mismatches: 27, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
144 293 1.00
145 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.36
Consensus pattern (143 bp):
AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTTATTGTACCTCTCCCAAAAC
AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCAGGACTTAGCCTTGGT
TCTAATCTATTAA
Found at i:5892583 original size:18 final size:18
Alignment explanation
Indices: 5892562--5892618 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
5892552 CTGAATATGC
*
5892562 ATCATTAAGATTATCCAG
1 ATCATTAAGATTATCAAG
**** * *
5892580 ATCATTTTTTTTATCTAT
1 ATCATTAAGATTATCAAG
5892598 ATCATTAAGATTATCAAG
1 ATCATTAAGATTATCAAG
5892616 ATC
1 ATC
5892619 TATTTTCTTT
Statistics
Matches: 27, Mismatches: 12, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.35, C:0.14, G:0.07, T:0.44
Consensus pattern (18 bp):
ATCATTAAGATTATCAAG
Found at i:5894024 original size:16 final size:17
Alignment explanation
Indices: 5893994--5894026 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
5893984 GTTTAAAAGA
5893994 ATTTTCAAATATATATG
1 ATTTTCAAATATATATG
*
5894011 ATTTT-AAATTTATATG
1 ATTTTCAAATATATATG
5894027 TTCTAACATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
ATTTTCAAATATATATG
Found at i:5896642 original size:30 final size:33
Alignment explanation
Indices: 5896600--5896659 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 33
5896590 TTATGTTTAT
5896600 AAAATAATTTTTTT-AACTTAAATT-TGTAAAA
1 AAAATAATTTTTTTAAACTTAAATTATGTAAAA
*
5896631 AAAAT-ATTTTTTTAAAGTTAAATTATGTA
1 AAAATAATTTTTTTAAACTTAAATTATGTA
5896660 TGAATTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 8 0.31
31 14 0.54
32 4 0.15
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (33 bp):
AAAATAATTTTTTTAAACTTAAATTATGTAAAA
Found at i:5898157 original size:144 final size:144
Alignment explanation
Indices: 5897540--5898122 Score: 1058
Period size: 144 Copynumber: 4.0 Consensus size: 144
5897530 AGTCAATGTG
*
5897540 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
5897605 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
5897670 TCTCTCCAACAATA
131 TCTCTCCAACAATA
*
5897684 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTGG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
*
5897749 GGGAACCAAATCAATGGATCTATCCCATTCGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
*
5897814 TCTCTCCAAGAATA
131 TCTCTCCAACAATA
*
5897828 GAATTGTTGGTCGAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
*
5897893 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTGATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
* *
5897958 TCTCTCCAGCAATG
131 TCTCTCCAACAATA
* *
5897972 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATATCTGCTCCTTTCG
1 GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
5898037 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
66 GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
*
5898102 TCTCTACAACAATA
131 TCTCTCCAACAATA
*
5898116 GACTTGT
1 GAATTGT
5898123 CGATTCAATA
Statistics
Matches: 422, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
144 422 1.00
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34
Consensus pattern (144 bp):
GAATTGTTGGTCCAATCCCTTCTGCTTTGGGTCAATTAACCAGTCTCCAATCTCTGATCCTTTCG
GGGAACCAAATCAATGGATCTATCCCATTAGAAATTGGATATTTGAGAAATTTGACTTATTTGAG
TCTCTCCAACAATA
Found at i:5898389 original size:144 final size:144
Alignment explanation
Indices: 5898194--5898504 Score: 561
Period size: 144 Copynumber: 2.2 Consensus size: 144
5898184 AACCAACTTC
5898194 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
1 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
* *
5898259 AAATTGACTGGTTCAATCCCTTCTTGTGTTGGTAGTTTATCAAAGATGCTGTACTTAAGCCTTGG
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
5898324 TTCTAATCTATTAA
131 TTCTAATCTATTAA
* *
5898338 AAGGTCCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTGACTTCATTGTACCTCTCCCAAAAC
1 AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
5898403 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
66 AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
5898468 TTCTAATCTATTAA
131 TTCTAATCTATTAA
*
5898482 AAGGTTCTA-TCCCAAAAGAAATT
1 AAGGTTCTATTCCC-CAAGAAATT
5898505 GGCAAGCTTT
Statistics
Matches: 160, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
143 4 0.03
144 156 0.98
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (144 bp):
AAGGTTCTATTCCCCAAGAAATTTGTAATCTAGCAAATTTAACTTCATTGTACCTCTCCCAAAAC
AAATTGACTGGTTCAATCCCTTCTTGTATTGGTAGTTTATCAAAGATGCTGGACTTAAGCCTTGG
TTCTAATCTATTAA
Found at i:5906004 original size:26 final size:27
Alignment explanation
Indices: 5905973--5906073 Score: 82
Period size: 27 Copynumber: 3.7 Consensus size: 27
5905963 TATTAAAAAC
5905973 ATATAAGAAATTTGA-TAAAATTTTA-AA
1 ATATAA-AAATTT-ATTAAAATTTTAGAA
*
5906000 A-ATAAAAAATTATTAAAATTTTAGAA
1 ATATAAAAATTTATTAAAATTTTAGAA
* * * * *
5906026 ATATAAAAAATTATTTAAACTATAAAA
1 ATATAAAAATTTATTAAAATTTTAGAA
*
5906053 AGCTATAGAAATTTATTAAAA
1 A--TATAAAAATTTATTAAAA
5906074 ACACCGAAAG
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
24 1 0.02
25 15 0.25
26 7 0.11
27 23 0.38
29 15 0.25
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (27 bp):
ATATAAAAATTTATTAAAATTTTAGAA
Found at i:5906021 original size:25 final size:27
Alignment explanation
Indices: 5905939--5906040 Score: 93
Period size: 27 Copynumber: 3.6 Consensus size: 27
5905929 ACTTATAAAT
* *
5905939 AAATATAGAAAAATATATTGAAATTATTAAA
1 AAATATA-AAAAAT-TATTAAAATT-TT-AG
*
5905970 AACATATAAGAAATT-TGATAAAATTTTA-
1 AA-ATATAAAAAATTAT--TAAAATTTTAG
5905998 AAA-ATAAAAAATTATTAAAATTTTAG
1 AAATATAAAAAATTATTAAAATTTTAG
5906024 AAATATAAAAAATTATT
1 AAATATAAAAAATTATT
5906041 TAAACTATAA
Statistics
Matches: 62, Mismatches: 3, Indels: 16
0.77 0.04 0.20
Matches are distributed among these distances:
25 10 0.16
26 12 0.19
27 15 0.24
28 2 0.03
29 2 0.03
30 3 0.05
31 13 0.21
32 5 0.08
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (27 bp):
AAATATAAAAAATTATTAAAATTTTAG
Found at i:5915901 original size:23 final size:24
Alignment explanation
Indices: 5915870--5915915 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
5915860 CAAAAATATT
*
5915870 ATAACTTTTTTTATTTACCAAAAA
1 ATAACTTTTTGTATTTACCAAAAA
5915894 ATAA-TTTTTGTATTTACCAAAA
1 ATAACTTTTTGTATTTACCAAAA
5915916 TATATAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.46
Consensus pattern (24 bp):
ATAACTTTTTGTATTTACCAAAAA
Found at i:5915993 original size:12 final size:12
Alignment explanation
Indices: 5915976--5916003 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
5915966 TCAGGCCAAA
5915976 ACCATTGGCGGC
1 ACCATTGGCGGC
5915988 ACCATTGGCGGC
1 ACCATTGGCGGC
5916000 ACCA
1 ACCA
5916004 ATGGTGCCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.14
Consensus pattern (12 bp):
ACCATTGGCGGC
Found at i:5916113 original size:11 final size:11
Alignment explanation
Indices: 5916097--5916138 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
5916087 GAGGTGCTGC
5916097 GAAAAAGAAGA
1 GAAAAAGAAGA
5916108 GAAAAAG-AGA
1 GAAAAAGAAGA
*
5916118 GAAAGAGAAGA
1 GAAAAAGAAGA
5916129 GAAAAAGAAG
1 GAAAAAGAAG
5916139 GTATTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (11 bp):
GAAAAAGAAGA
Found at i:5916126 original size:21 final size:21
Alignment explanation
Indices: 5916097--5916136 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
5916087 GAGGTGCTGC
5916097 GAAAAAGAAGAGAAAAAGAGA
1 GAAAAAGAAGAGAAAAAGAGA
*
5916118 GAAAGAGAAGAGAAAAAGA
1 GAAAAAGAAGAGAAAAAGA
5916137 AGGTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (21 bp):
GAAAAAGAAGAGAAAAAGAGA
Found at i:5916199 original size:22 final size:22
Alignment explanation
Indices: 5916162--5916204 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
5916152 AATAATTGAT
*
5916162 TATATTGTTGTTATATTGTTTTG
1 TATATTGTTGTAATATT-TTTTG
5916185 TATATT-TTGTAATATTTTTT
1 TATATTGTTGTAATATTTTTT
5916205 ATTTTAGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 9 0.47
23 6 0.32
ACGTcount: A:0.21, C:0.00, G:0.12, T:0.67
Consensus pattern (22 bp):
TATATTGTTGTAATATTTTTTG
Found at i:5916272 original size:3 final size:3
Alignment explanation
Indices: 5916266--5916300 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
5916256 AGTATTATTA
5916266 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
5916301 AGTATTAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:5917165 original size:18 final size:18
Alignment explanation
Indices: 5917142--5917179 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
5917132 GGTTGGTGGT
5917142 GAAGAAGAAGGTGCTGGC
1 GAAGAAGAAGGTGCTGGC
*
5917160 GAAGAAGAAGGTGGTGGC
1 GAAGAAGAAGGTGCTGGC
5917178 GA
1 GA
5917180 TCATTGGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.08, G:0.47, T:0.11
Consensus pattern (18 bp):
GAAGAAGAAGGTGCTGGC
Found at i:5921433 original size:4 final size:4
Alignment explanation
Indices: 5921417--5921559 Score: 100
Period size: 4 Copynumber: 35.0 Consensus size: 4
5921407 CTCCTTTCCT
*
5921417 TTTC TTTC ATTC TTTC TTT- TTTC TTCTCC TTTCC TCTTC -TTC -TTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TT-T-C TTT-C T-TTC TTTC TTTC
* * *
5921462 TTTC TTTC TTTT TTTC TCTTC -TCC TTTCC TTTTC TTTC CTTC -TT- TTTC
1 TTTC TTTC TTTC TTTC T-TTC TTTC TTT-C -TTTC TTTC TTTC TTTC TTTC
* * *
5921510 TTTC TTTCC TCTCC TTCC TTTC TTCC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTT-C T-TTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
5921560 CCTCTCCTTC
Statistics
Matches: 115, Mismatches: 11, Indels: 26
0.76 0.07 0.17
Matches are distributed among these distances:
3 15 0.13
4 76 0.66
5 15 0.13
6 9 0.08
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:5921442 original size:35 final size:36
Alignment explanation
Indices: 5921402--5921560 Score: 175
Period size: 40 Copynumber: 4.4 Consensus size: 36
5921392 TCCTTTCCTC
*
5921402 TTCTTCTCCTTTCCTTTTCTTTCATTCTTTCTTT-T
1 TTCTTCTCCTTTCCTTTTCTTTCTTTCTTTCTTTCT
* *
5921437 TTCTTCTCCTTTCCTCTTCTTCTTCTTTCTTTCTTTTTT
1 TTCTTCTCCTTTCCTTTTC-T-TTCTTTCTTTC-TTTCT
*
5921476 TCTCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCT
1 T-TCTTCTCCTTTCCTTTTCTTT-CTT-TCTTTCTTTCT
* *
5921515 TTCCTCTCC-TTCC-TTTCTTCCTTTCTTTCTTTCT
1 TTCTTCTCCTTTCCTTTTCTTTCTTTCTTTCTTTCT
5921549 TTCTT-T-CTTTCC
1 TTCTTCTCCTTTCC
5921561 CTCTCCTTCT
Statistics
Matches: 107, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
32 1 0.01
33 5 0.05
34 14 0.13
35 21 0.20
36 7 0.07
37 14 0.13
38 12 0.11
39 11 0.10
40 22 0.21
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.67
Consensus pattern (36 bp):
TTCTTCTCCTTTCCTTTTCTTTCTTTCTTTCTTTCT
Found at i:5921448 original size:30 final size:30
Alignment explanation
Indices: 5921402--5921471 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 30
5921392 TCCTTTCCTC
*
5921402 TTCTTCTCCTTTCCTTTTCTTTCATTCTTTCTTTT
1 TTCTTCTCCTTTCCTCTTC-TTC-TTCTTTC---T
5921437 TTCTTCTCCTTTCCTCTTCTTCTTCTTTCT
1 TTCTTCTCCTTTCCTCTTCTTCTTCTTTCT
5921467 TTCTT
1 TTCTT
5921472 TTTTTCTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
30 6 0.18
33 7 0.21
34 3 0.09
35 18 0.53
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.67
Consensus pattern (30 bp):
TTCTTCTCCTTTCCTCTTCTTCTTCTTTCT
Found at i:5921559 original size:70 final size:74
Alignment explanation
Indices: 5921403--5921560 Score: 204
Period size: 75 Copynumber: 2.2 Consensus size: 74
5921393 CCTTTCCTCT
*
5921403 TCTTCTCCTTTCCTTTTCTTTCATTCTTTCTTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTTCTT
1 TCTTCTCCTTTCCTTTTCTTTCATTCTTTCTTTTTTCCTCTCCTTTCCTCTTCTTC-TCTTTCTT
*
5921468 TCTTTTTTTC
65 TCTTTTCTTC
*
5921478 TCTTCTCCTTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCC-TTCCT-TTCTTC-CTTTC
1 TCTTCTCCTTTCCTTTTCTTTCATTC--TTTCTTT-TTTCCTCTCCTTTCCTCTTCTTCTCTTTC
5921540 TTTC-TTTCTT-
63 TTTCTTTTCTTC
5921550 TCTT-T-CTTTCC
1 TCTTCTCCTTTCC
5921561 CTCTCCTTCT
Statistics
Matches: 77, Mismatches: 3, Indels: 11
0.85 0.03 0.12
Matches are distributed among these distances:
70 6 0.08
71 1 0.01
72 4 0.05
73 5 0.06
74 9 0.12
75 25 0.32
76 6 0.08
77 12 0.16
78 9 0.12
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (74 bp):
TCTTCTCCTTTCCTTTTCTTTCATTCTTTCTTTTTTCCTCTCCTTTCCTCTTCTTCTCTTTCTTT
CTTTTCTTC
Found at i:5921718 original size:20 final size:21
Alignment explanation
Indices: 5921678--5921719 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
5921668 TTTTTTTGAT
*
5921678 ATATTTTGGTAAATAAAAAAA
1 ATATTTTAGTAAATAAAAAAA
5921699 ATATTTTAGTAAATAAAAAAA
1 ATATTTTAGTAAATAAAAAAA
5921720 GTTATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (21 bp):
ATATTTTAGTAAATAAAAAAA
Found at i:5925790 original size:24 final size:24
Alignment explanation
Indices: 5925758--5925803 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
5925748 ACGTTCATGT
*
5925758 ATAGAAAAT-ATAATAATTATAATG
1 ATAGAAAATGAT-ATAATAATAATG
*
5925782 ATAGTAAATGATATAATAATAA
1 ATAGAAAATGATATAATAATAA
5925804 ATAATGGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (24 bp):
ATAGAAAATGATATAATAATAATG
Found at i:5925816 original size:27 final size:28
Alignment explanation
Indices: 5925765--5925834 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 28
5925755 TGTATAGAAA
*
5925765 ATATAATAAT-TATAATGATAGTAAATG
1 ATATAATAATAAATAATGATAGTAAATG
*
5925792 ATATAATAATAAATAATGGTA-TAAATG
1 ATATAATAATAAATAATGATAGTAAATG
*
5925819 -TAGTAATAAAAAATAA
1 ATA-TAATAATAAATAA
5925835 CTAAAATGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.05
27 28 0.74
28 8 0.21
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (28 bp):
ATATAATAATAAATAATGATAGTAAATG
Found at i:5928657 original size:144 final size:144
Alignment explanation
Indices: 5928432--5928723 Score: 455
Period size: 144 Copynumber: 2.0 Consensus size: 144
5928422 TGTGACCTGA
* * *
5928432 AAGCCTATTGAAGGATAGATGCAATTCAACCAAATTCTTTAGTCTCCCAATATCTTTTGGAATGG
1 AAGCATATTGAAGGATAGATGCAATTCAACCAAATTCTTTAGTCTCCCAATATCATGTGGAATGG
**
5928497 ATCCATTTAGTTGGTTGCT-TTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGA
66 ATCCATGAAGTTGGTTG-TATTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGA
5928561 TGGGATTGGACCAAC
130 TGGGATTGGACCAAC
*
5928576 AAGCATATTGAAGGATAGAT-CTAATGT-AACCAAATTCTTTAGTCTCCCAATTTCATGTGGAAT
1 AAGCATATTGAAGGATAGATGC-AAT-TCAACCAAATTCTTTAGTCTCCCAATATCATGTGGAAT
* *
5928639 GGATGCATGAAGTTGGTTGTATTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACGGAAG
64 GGATCCATGAAGTTGGTTGTATTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAG
*
5928704 ATGGGATTTGACCAAC
129 ATGGGATTGGACCAAC
5928720 AAGC
1 AAGC
5928724 CTGTTGTTTG
Statistics
Matches: 136, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
143 2 0.01
144 133 0.98
145 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (144 bp):
AAGCATATTGAAGGATAGATGCAATTCAACCAAATTCTTTAGTCTCCCAATATCATGTGGAATGG
ATCCATGAAGTTGGTTGTATTGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
GGGATTGGACCAAC
Found at i:5937782 original size:3 final size:3
Alignment explanation
Indices: 5937774--5937829 Score: 58
Period size: 3 Copynumber: 17.3 Consensus size: 3
5937764 TCTGTTACTC
* *
5937774 CTT CTT CTT CTT CCTT CTAT ACTT CTCT ATT CTT CTT CTT CTT TTT CTT
1 CTT CTT CTT CTT -CTT CT-T -CTT CT-T CTT CTT CTT CTT CTT CTT CTT
5937823 CTT CTT C
1 CTT CTT C
5937830 AGCATGCATC
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
3 36 0.80
4 7 0.16
5 2 0.04
ACGTcount: A:0.05, C:0.32, G:0.00, T:0.62
Consensus pattern (3 bp):
CTT
Found at i:5939759 original size:6 final size:6
Alignment explanation
Indices: 5939691--5939749 Score: 118
Period size: 6 Copynumber: 9.8 Consensus size: 6
5939681 CACTTTAACA
5939691 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
5939739 TAAAAT TAAAA
1 TAAAAT TAAAA
5939750 AAAAATAAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
TAAAAT
Found at i:5942830 original size:56 final size:56
Alignment explanation
Indices: 5942749--5942905 Score: 188
Period size: 56 Copynumber: 2.8 Consensus size: 56
5942739 AGTAGTTACG
* * *
5942749 TAAGAATCAAATTACTAAAATATAATATCCCATAATAATATCTTATAATATCCCAT
1 TAAGAATCAAATTGCTAAAAAATAATATCCCATAATAATATCCTATAATATCCCAT
* * * * * * * *
5942805 TAGGAATCAAATTGCTAAGAGATAATATCTCGTAATAATATCCTATAATCTTCTAT
1 TAAGAATCAAATTGCTAAAAAATAATATCCCATAATAATATCCTATAATATCCCAT
* **
5942861 TAAGAATCAAATTGCTAAAAAACAATATAGCATAATAATATCCTA
1 TAAGAATCAAATTGCTAAAAAATAATATCCCATAATAATATCCTA
5942906 ACAAAGATTT
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 84 1.00
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.32
Consensus pattern (56 bp):
TAAGAATCAAATTGCTAAAAAATAATATCCCATAATAATATCCTATAATATCCCAT
Found at i:5945840 original size:3 final size:3
Alignment explanation
Indices: 5945834--5945864 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
5945824 CAACAACAAC
5945834 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
5945865 TTGAAATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:5946354 original size:11 final size:12
Alignment explanation
Indices: 5946340--5946375 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
5946330 AAGAAAAAAA
5946340 GAAGAGAG-AGG
1 GAAGAGAGAAGG
5946351 GAAGAGAGAAGG
1 GAAGAGAGAAGG
5946363 G-AGAGAGAAGG
1 GAAGAGAGAAGG
5946374 GA
1 GA
5946376 GGGGGGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:5947891 original size:72 final size:72
Alignment explanation
Indices: 5947655--5947907 Score: 400
Period size: 73 Copynumber: 3.5 Consensus size: 72
5947645 ACATGTGAAC
* * *
5947655 TGAGGCTCAACTCACTTT-TCGCAATGTGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 TGAGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
* *
5947719 CAGCGTGTCC
63 CAACGTGTCT
*
5947729 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCA
5947794 ACGTGTCT
65 ACGTGTCT
5947802 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
*
5947867 TGTGTCT
66 CGTGTCT
5947874 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
1 TGAGGCTCAACTCATTTCTCGCAATATGAGTTGA
5947908 TTCTTTCAAA
Statistics
Matches: 169, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
72 68 0.40
73 72 0.43
74 29 0.17
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Consensus pattern (72 bp):
TGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAA
CGTGTCT
Found at i:5947967 original size:86 final size:86
Alignment explanation
Indices: 5947840--5948084 Score: 269
Period size: 86 Copynumber: 2.8 Consensus size: 86
5947830 AGTTGAATTT
* ** * **
5947840 TGAAAACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 TGAAAACAGAAATGGAAA-TACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
5947905 TGA-TTCTTTCAAAAACATAATAA
65 TGATTTCTTTCAAAAACA-AA-AA
*
5947928 TGAAAACAGAAATGGAAA-ACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 TGAAAACAGAAATGGAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
5947992 GATTTTTTTTGAAAAACAGAAA
66 GA-TTTCTTTCAAAAACAAAAA
* ** * *
5948014 TCAAAAGGCTTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TGAAAA--CAGAAATGGAAATACCTC-G-GTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
5948079 AGTTGA
62 AGTTGA
5948085 AATTAAAACA
Statistics
Matches: 134, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
86 49 0.37
87 1 0.01
88 37 0.28
89 5 0.04
90 1 0.01
91 41 0.31
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (86 bp):
TGAAAACAGAAATGGAAATACCTCGGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTCTTTCAAAAACAAAAA
Found at i:5948606 original size:75 final size:74
Alignment explanation
Indices: 5948303--5948641 Score: 459
Period size: 75 Copynumber: 4.5 Consensus size: 74
5948293 AGTGTGTAAT
*
5948303 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT-AAAACAGAAATTGAAAATACC
*
5948368 TCAGCATGTGAAC
65 TCAGC--GTG-TC
*
5948381 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTT-AAAACAGAAATTGAAAATAC
*
5948445 CTCAACGTGTC
64 CTCAGCGTGTC
* ** * * * *
5948456 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAACAGAAATTGAAAATACCT
5948519 CAGCGTGTC
66 CAGCGTGTC
** *
5948528 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAA-AACAGAAATTGAAAATACC
5948593 TCAGCGTGTC
65 TCAGCGTGTC
*
5948603 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
5948642 GAAAAACAAA
Statistics
Matches: 237, Mismatches: 19, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
72 62 0.26
73 4 0.02
74 6 0.03
75 66 0.28
76 34 0.14
77 31 0.13
78 34 0.14
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:5948650 original size:75 final size:74
Alignment explanation
Indices: 5948303--5948641 Score: 441
Period size: 72 Copynumber: 4.5 Consensus size: 74
5948293 AGTGTGTAAT
*
5948303 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAAACAGAAATTGAAAATACC
*
5948368 TCAGCATGTGAAC
65 TCAGC--GTG-TC
* *
5948381 C-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTAAAAACAGAAATTGAAAATAC
*
5948445 CTCAACGTGTC
64 CTCAGCGTGTC
* ** * * * *
5948456 TTGAGGCTCAACTCATTTCTCGCAATATAAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCT
5948519 CAGCGTGTC
66 CAGCGTGTC
** * *
5948528 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTAAAAACAGAAATTGAAAATACC
5948593 TCAGCGTGTC
65 TCAGCGTGTC
*
5948603 CTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
5948642 GAAAAACAAA
Statistics
Matches: 237, Mismatches: 19, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
72 67 0.28
74 4 0.02
75 67 0.28
76 34 0.14
77 31 0.13
78 34 0.14
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:5948807 original size:71 final size:70
Alignment explanation
Indices: 5948659--5948834 Score: 212
Period size: 71 Copynumber: 2.5 Consensus size: 70
5948649 AAAAATTAAA
* * * * * * **
5948659 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
5948723 CCCCG
66 CCCCG
*
5948728 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAAAAAAAACTAAAAATACCTCAACGT
* **
5948793 GTCTTG
65 GCCCCG
5948799 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
5948835 CCTTGGAAAG
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.07
71 60 0.65
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAAAAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:5957028 original size:19 final size:18
Alignment explanation
Indices: 5956986--5957316 Score: 115
Period size: 19 Copynumber: 17.6 Consensus size: 18
5956976 ACAAAATAAT
5956986 AATTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
*
5957004 GATTTTTG-AAACACGAA
1 AATTTTTGAAAACACGAA
5957021 AATTTTTTGAAAACACGAAAACACAA
1 AA-TTTTTGAAAACACG-------AA
* **
5957047 AATATTTT--TAACACGGG
1 AAT-TTTTGAAAACACGAA
5957064 AATTTTTGAAAACACGACA
1 AATTTTTGAAAACACGA-A
** **
5957083 GTTTTTTTTTAAACACGAA
1 -AATTTTTGAAAACACGAA
*
5957102 ATTTTTTTGAAAACACAGAA
1 A-ATTTTTGAAAACAC-GAA
* * *
5957122 ATTTTTTGAAAACAAGGA
1 AATTTTTGAAAACACGAA
* * * *
5957140 AATTTTAG-ATACATGAG
1 AATTTTTGAAAACACGAA
5957157 AATTCTTTG---ACACGAA
1 AATT-TTTGAAAACACGAA
* * *
5957173 AAATTTTGAAAACATGAG
1 AATTTTTGAAAACACGAA
** *
5957191 AA-TTCCGAAAACATG--
1 AATTTTTGAAAACACGAA
* *
5957206 AATTTTTTAAAACATGAA
1 AATTTTTGAAAACACGAA
*
5957224 AATTTTTAAAAAACACGAGA
1 AATTTTT-GAAAACACGA-A
*
5957244 ATTTTTTGAAAACACGAAA
1 AATTTTTGAAAACACG-AA
**
5957263 ACATGAAAATTTTGAAAACACAGGC
1 A-AT-----TTTTGAAAACAC-GAA
5957288 AATTTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
*
5957306 AATTTCTGAAA
1 AATTTTTGAAA
5957317 GACGGGAGTT
Statistics
Matches: 236, Mismatches: 44, Indels: 66
0.68 0.13 0.19
Matches are distributed among these distances:
15 6 0.03
16 22 0.09
17 33 0.14
18 55 0.23
19 63 0.27
20 26 0.11
24 8 0.03
25 14 0.06
26 9 0.04
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.30
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:5957096 original size:20 final size:19
Alignment explanation
Indices: 5957073--5957128 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
5957063 GAATTTTTGA
*
5957073 AAACACGACAGTTTTTTTTT
1 AAACACGA-AATTTTTTTTT
**
5957093 AAACACGAAATTTTTTTGA
1 AAACACGAAATTTTTTTTT
5957112 AAACACAGAAATTTTTT
1 AAACAC-GAAATTTTTT
5957129 GAAAACAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 14 0.44
20 18 0.56
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (19 bp):
AAACACGAAATTTTTTTTT
Found at i:5957219 original size:16 final size:17
Alignment explanation
Indices: 5957172--5957234 Score: 65
Period size: 17 Copynumber: 3.8 Consensus size: 17
5957162 TTTGACACGA
*
5957172 AAAATTTTGAAAACATG
1 AAAATTTTTAAAACATG
* ***
5957189 AGAATTCCGAAAACATG
1 AAAATTTTTAAAACATG
*
5957206 -AATTTTTTAAAACATG
1 AAAATTTTTAAAACATG
5957222 AAAATTTTTAAAA
1 AAAATTTTTAAAA
5957235 AACACGAGAA
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
16 11 0.31
17 25 0.69
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.32
Consensus pattern (17 bp):
AAAATTTTTAAAACATG
Found at i:5957265 original size:27 final size:25
Alignment explanation
Indices: 5957233--5957283 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
5957223 AAATTTTTAA
*
5957233 AAAACACGAGAATTTTTTGAAAACACG
1 AAAACACGA-AA-ATTTTGAAAACACG
*
5957260 AAAACATGAAAATTTTGAAAACAC
1 AAAACACGAAAATTTTGAAAACAC
5957284 AGGCAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.55
26 2 0.09
27 8 0.36
ACGTcount: A:0.53, C:0.14, G:0.12, T:0.22
Consensus pattern (25 bp):
AAAACACGAAAATTTTGAAAACACG
Found at i:5957296 original size:44 final size:46
Alignment explanation
Indices: 5957214--5957307 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 46
5957204 TGAATTTTTT
*
5957214 AAAACATGAAAATTTTTAAAAAACACGAGAATTTTTTGAAAACACG
1 AAAACATGAAAATTTTGAAAAAACACGAGAATTTTTTGAAAACACG
*
5957260 AAAACATGAAAATTTTGAAAACACA-G-GCAA-TTTTTGAAAACACG
1 AAAACATGAAAATTTTGAAAAAACACGAG-AATTTTTTGAAAACACG
5957304 AAAA
1 AAAA
5957308 TTTCTGAAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
44 19 0.42
45 3 0.07
46 23 0.51
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (46 bp):
AAAACATGAAAATTTTGAAAAAACACGAGAATTTTTTGAAAACACG
Found at i:5957394 original size:24 final size:23
Alignment explanation
Indices: 5957341--5957431 Score: 104
Period size: 24 Copynumber: 4.2 Consensus size: 23
5957331 TTGTTTTTTG
5957341 TTTT-ATTTTAAAACACGAAAAT
1 TTTTCATTTTAAAACACGAAAAT
*
5957363 TTTTCATTTGAAAACACGAAAATT
1 TTTTCATTTTAAAACACGAAAA-T
*
5957387 TTTTCATTTTAAAACGCG--AA-
1 TTTTCATTTTAAAACACGAAAAT
*
5957407 TTTT--TTTTAAAACACGAAAAC
1 TTTTCATTTTAAAACACGAAAAT
5957428 TTTT
1 TTTT
5957432 GAAAACACGA
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
18 11 0.18
20 6 0.10
21 4 0.07
22 6 0.10
23 16 0.27
24 17 0.28
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.42
Consensus pattern (23 bp):
TTTTCATTTTAAAACACGAAAAT
Found at i:5957431 original size:18 final size:18
Alignment explanation
Indices: 5957410--5957444 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
5957400 ACGCGAATTT
*
5957410 TTTTTAAAACACGAAAAC
1 TTTTGAAAACACGAAAAC
5957428 TTTTGAAAACACGAAAA
1 TTTTGAAAACACGAAAA
5957445 GTCGAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.26
Consensus pattern (18 bp):
TTTTGAAAACACGAAAAC
Done.